Citrus Sinensis ID: 002446

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-
Protein Sequence
MLEQQIGDIELNLVFWVFVNFIVRLFSGMRNSTDGPKPQNGVVSRSTKSPFRAISSYFRIVSSGASTVARSAVSVASSIVERDDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSVTVNGALAAEPNIGIEETSLDCPQMPVDTKGFVNNSVSPKTKTRHEIVNNSESLRVEAQLKFVNSKIEGLRMENHFEDEGDEFD
Secondary Structure (PSIPRED)
ccccccccEEEEEHHHHHHHHHHEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccEEEEEEEEEccccccccEEEEEEccccEEEEEEcccccEEEcEEcccccEEEEEEEccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEccEEEEEEcccccEEEEEEccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEccccccccccEEEcccccEEEccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccccEEEEEEEEcccEEEEEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccEEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEcccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEcccHHHHHHHHHHHHHccccccccccccHcccEEEEEEccccccccEEEccccEEEcccccccEEEEEEEcccEEEEEEccccccEEEEEcccccEEEEEEcccccccccccccHHccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEccccEEEEEccccEEEEEEccEEEEEEcHHHHccEEEEEcccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEccccccccccccccccEEEEEEEEcccccEEEEEEEEcccccEEEEEEccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHEEcccccccccccccccHHcccccccccccEHHHHccccccccccccccccccccEEEEEccccEEEEEEEcccccccccccccccccccccccccccEEEEEcccccccccccccccHccccccccccccccccccccHHcccccccccccccccccccccccccccEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccccEEEEEEccccEEEEcccccccHHHcccccccccccccccccccccccHHcccccccccccccccccccHHHccccccccccccccEEcccccccEcccccHHHEccccccccccHHHHcccccccccHHEEEEEccccccccHHHcccccccccc
Coil and Loop (DISEMBL)
MLEQQIGDIELNLVFWVFVNFIVRLFsgmrnstdgpkpqngvvsrstkspFRAISSYFRIVSSGASTVARSAVSVASSIverddesshdQVLWAGFDKLESEAGATRRVLLLGYRsgfqvwdveeadnvhdlvsrydgpvsfmqmlprpitskrsrdkfaevRPLLVFcadgsrscgtkvqdglatacngtsanyhdlgngssvptVVHFYSLRSQSYVHMLkfrspiysvrcsSRVVAICQAAQVHCFDAATLEIEYAILtnpivmghpsaggigigygplavgprwlaysgspvvvsndgrvnpqhlmqsrsfsgfasngsrvaHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFlpdsqnslqsaipggksngtvnghfpdadnvGMVIVRDIVSKNVIAQFrahkspisalcfdpsgILLVTASvqghninifkiipgilgtssacdagtsyVHLYRLQRGLtnaviqdisfsddsnwimisssrgtshlfainplggsvnfqptdanfttkhgamaksgvrwppnlglqmpnqqslcasgppvtLSVVSRIrngnngwrgtVSGAAAAATGRVSSLSGAIASsfhnckgnsetyaagsslkiknhllvfspsgcmIQYALRIStgldvtmgvpglgsaydsvpeddpRLVVEAIQKWNICQKQARRErednidiygdngtldsnkiypeevkdgnfasteangviektkvspedkhhLYISEAelqmhppriplwakpqIYFQSMMIKDFKMGeenflkgeieierfptrMIEArskdlvpvfdylqspkfsqarvptvgrnsnerllhqrsglsengllsrrsssgsldsvtvngalaaepnigieetsldcpqmpvdtkgfvnnsvspktktrheivnnsESLRVEAQLKFVNSKieglrmenhfedegdefd
Flexible Loop (DISEMBL)
mleqqigdielnLVFWVFVNFIVRLFSgmrnstdgpkpqngvvsrstkspFRAISSYFRIVSSGASTVARSAVSVASSiverddesshDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVsrydgpvsfmqmlprpitskrsrdkfAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWnicqkqarrerednidiygdngtldsnkiypEEVKDgnfasteangviektkvspedKHHLYISEAelqmhppriPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYlqspkfsqarvptvgrnsnerllhqrsglsengllsrrsssgsldsVTVNGALAAEPNIGIEETSLDCPQMPVDTKGfvnnsvspktktrheivnnseslrveaQLKFVnskieglrmenhfedegdefd
Low Complexity Region (SEG)
MLEQQIGDIELNLVFWVFVNFIVRLFSGMRNSTDGPKPQNGVVSRSTKSPFRAISSYFRIvssgastvarsavsvassIVERDDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWrgtvsgaaaaatgrvssLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNSNERLLHQrsglsengllsrrsssgsldsVTVNGALAAEPNIGIEETSLDCPQMPVDTKGFVNNSVSPKTKTRHEIVNNSESLRVEAQLKFVNSKIEGLRMENHFEDEGDEFD
Disordered region (IsUnstruct)
*****IGDIELNLVFWVFVNFIVRLFSG************************AISSYFRIVSSG*************************QVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLP**********KFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVS**********************************KHLAAGIVNLGDLGYKKLSQYCSEFL*********************GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKH******GVRWP*************C***PPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQA******NIDIYGDNGTL***************************************************************************FLKGEIEIERFPTRMIEARSKDLVPVFDYLQ********************************************************************************************************************************
Disordered Region (DISOPRED)
******GDIELNLVFWVFVNFIVRL******************************************************************LWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRS**KFAEVRPLLVFCADGSR******************************PTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGH******GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSG*ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE*************************FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI***********SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN***************************************QQSLCASGPPVTL*****************************SLSGAIASSFHNCKGN***********IKNHLLVFSPSGCMIQYALR****************************VVEAIQKWNICQKQ*******************************************************YISEAELQMHPPRIPLWAKPQIYFQSM**********************PTRMIEARSKDLVPVFDYLQ*****************************************************************************************************AQLKFVNSKIEGLRM************
Disordered Region (DISEMBL)
MLEQQIGDIELNLVFWVFVNFIVRLFSGMRNS****************SPFRAISSYFRIVSSGA***********************DQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSVTVNGALAAEPNIGIEETSLDCPQMPVDTKGFVNNSVSPKTKTRHEIVNNSESLRVEAQLKFVNSKIEGLRMENHF********
Disordered Region (DISPRO)
MLEQQIGDIELNLVFWVFVNFIVRLFSGMR********QNGVVSRSTKSPFRAISSYFRIVSSGASTVARSAVSVASSIVERDDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGS***************************GSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNP*************SNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF***************************ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSS*CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV************************************LCASGPPVTLSVVSRIRNGNNGWRG*************SS***AIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTG*******************DDPRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKD*********************KHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNS*******RS*L***********SGSLDSVTVNGALAAEPNIGIEETSLDCPQMPVDTKGFVNNSVSPKTKTRHEIVNNSESLRVEAQLKFVNSKIEGLRMENHFEDE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLEQQIGDIELNLVFWVFVNFIVRLFSGMRNSTDGPKPQNGVVSRSTKSPFRAISSYFRIVSSGASTVARSAVSVASSIVERDDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSVTVNGALAAEPNIGIEETSLDCPQMPVDTKGFVNNSVSPKTKTRHEIVNNSESLRVEAQLKFVNSKIEGLRMENHFEDEGDEFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	921	2.2.26 [Sep-21-2011]
Q9H6U6	928	Breast carcinoma-amplifie	yes	no	0.378	0.376	0.292	7e-42
Q8CCN5	928	Breast carcinoma-amplifie	yes	no	0.370	0.367	0.287	1e-41
Q8SY41	1122	Breast carcinoma-amplifie	yes	no	0.383	0.314	0.279	7e-30
Q7ZWU5	435	WD repeat domain phosphoi	N/A	no	0.166	0.351	0.291	4e-09
Q75F47	537	Autophagy-related protein	yes	no	0.280	0.480	0.247	1e-08
Q6BIL4	562	Autophagy-related protein	yes	no	0.236	0.387	0.221	3e-08
P43601	500	Autophagy-related protein	yes	no	0.290	0.536	0.241	5e-08
A7A258	500	Autophagy-related protein	N/A	no	0.290	0.536	0.241	5e-08
Q5ZHN3	436	WD repeat domain phosphoi	no	no	0.153	0.323	0.284	6e-08
Q54NA2	372	Autophagy-related protein	no	no	0.111	0.276	0.316	6e-08

>sp|Q9H6U6|BCAS3_HUMAN Breast carcinoma-amplified sequence 3 OS=Homo sapiens GN=BCAS3 PE=1 SV=3

 Score =  173 bits (438), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/420 (29%), Positives = 198/420 (47%), Gaps = 71/420 (16%)

Query: 96  FDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRS 155
           F ++ S       ++++GY  G QVW +  +    +L S   GP+   ++LP P    + 
Sbjct: 79  FHEIHSTGNEPPLLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQK 138

Query: 156 RDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRS 215
            D FAE RPLL  C    +S G+          +GTS  Y            V  YSLR+
Sbjct: 139 CDNFAEKRPLLGVC----KSIGS----------SGTSPPY----------CCVDLYSLRT 174

Query: 216 QSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 275
              V  ++F++PIY + C+ R++ +    ++  FD+ T   ++ + +      +P  G  
Sbjct: 175 GEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSC-----YPCPGP- 228

Query: 276 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 332
                P+A+G RWLAY+ + ++  +          QSR      + G  +  Y      +
Sbjct: 229 --NMNPIALGSRWLAYAENKLIRCH----------QSRG----GACGDNIQSYTATVISA 272

Query: 333 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFP------DA 386
           +K L +G+  +G     K+    +  LP        AI    SN   +   P      D 
Sbjct: 273 AKTLKSGLTMVG-----KVVTQLTGTLPSGVTEDDVAI---HSNSRRSPLVPGIITVIDT 324

Query: 387 DNVG---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 443
           + VG   +++  D  S  ++A F AH+ P+  + F+ SG+LLVT    GH+ ++F+I+  
Sbjct: 325 ETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTH 384

Query: 444 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 503
              +SS C    +  HLY L RG T A +QDI FS D  W+++S+ RGTSH+F INP GG
Sbjct: 385 PW-SSSQC----AVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGG 439

Homo sapiens (taxid: 9606)

>sp|Q8CCN5|BCAS3_MOUSE Breast carcinoma-amplified sequence 3 homolog OS=Mus musculus GN=Bcas3 PE=1 SV=2

 Score =  172 bits (436), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 198/428 (46%), Gaps = 87/428 (20%)

Query: 96  FDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRS 155
           F +L S       ++++GY  G QVW +  +    +L S   GPV   ++LP P    + 
Sbjct: 79  FHELHSTGNEPPLLVMIGYSDGMQVWGIPISGEAQELFSVRHGPVRAARILPAPQLGAQK 138

Query: 156 RDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRS 215
            D FAE RPLL  C    +S G+          +GT+  Y            V  YSLR+
Sbjct: 139 CDNFAEKRPLLGVC----KSIGS----------SGTTPPY----------CCVDLYSLRT 174

Query: 216 QSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 275
              V  ++F++PIY + C+ R++ +    ++  FD+ T   ++ + +      +P  G  
Sbjct: 175 GEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSC-----YPCPGP- 228

Query: 276 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 332
                P+A+G RWLAY+ + ++  +          QSR      + G  +  Y      +
Sbjct: 229 --NMNPIALGSRWLAYAENKLIRCH----------QSRG----GACGDNIQSYTATVLSA 272

Query: 333 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGH---------- 382
           +K L +G+  +G    K ++Q            L   +P G +   V  H          
Sbjct: 273 AKTLKSGLTMVG----KVVTQ------------LTGTLPSGVTEDDVALHCNSRRSPLVP 316

Query: 383 ----FPDADNVG---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 435
                 D + VG   +++  D  S  ++A F AH+ P+  + F+ SG+LLVT    GH+ 
Sbjct: 317 GIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDF 376

Query: 436 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 495
           ++F+I+     +SS C    +  HLY L RG T A +QDI FS D  W+++S+ RGTSH+
Sbjct: 377 HVFQILTHPW-SSSQC----AVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHV 431

Query: 496 FAINPLGG 503
           F INP GG
Sbjct: 432 FPINPYGG 439

Mus musculus (taxid: 10090)

>sp|Q8SY41|BCAS3_DROME Breast carcinoma-amplified sequence 3 homolog OS=Drosophila melanogaster GN=CG43154 PE=1 SV=1

 Score =  133 bits (334), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 191/436 (43%), Gaps = 83/436 (19%)

Query: 119 QVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITS---------KRSRDKFAEVRPLLVFC 169
           QVW +       +++S   G V+ +++LP P T+             D FAE RPL+ F 
Sbjct: 122 QVWAIPANGEAVEVLSWRHGVVTALRVLPTPATAAALDENGRADEPVDSFAEKRPLVAFV 181

Query: 170 ----------ADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVP-TVVHFYSLRSQSY 218
                       GS   G     G  T   G+      +G  +S   + V+F SL++   
Sbjct: 182 DGGSAAASGLLAGSSGLGLGGGGGGVTTVGGSVGGVSGIGVSASAQFSAVNFMSLKTGVQ 241

Query: 219 VHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 278
           V  +KF++ +  ++ +   V I    ++  FDA TLE    I T      +PS G   I 
Sbjct: 242 VKTIKFKNAVLDIQANRSAVVITFHERIAVFDARTLEDRLTITTC-----YPSPG---IN 293

Query: 279 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ESSKH 335
             P+A+GPRWLAY+              +H +     SG   +G  V  Y      ++K 
Sbjct: 294 PNPIALGPRWLAYA--------------EHKLLHSKRSGGGCDGEGVPSYTATVLNAAKS 339

Query: 336 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVR 395
           L+ G+   G+     L+   +     S++S   +  GG          PDA   G+V + 
Sbjct: 340 LSKGLREFGEQVAAGLTGTTAGSGASSKSSSFDSASGG----------PDAKQSGVVTII 389

Query: 396 DIV-----------------------SKNVIAQFRAHKSPISALCFDPSGILLVTASVQG 432
           D+                           ++A F AH   + A+ FD SG+LL+TA  +G
Sbjct: 390 DVKHPVKDYSPTSGTPLSSTAGSQGGGDPIVAHFVAHSEALVAMEFDSSGMLLLTADRRG 449

Query: 433 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGT 492
           H+ ++F++ P  +G S A        HLY L RG T+A +Q I+FS DS W  +S+ RGT
Sbjct: 450 HDFHVFRVQPHPVGPSLAA-----VHHLYVLHRGDTSAKVQHIAFSLDSRWAAVSTLRGT 504

Query: 493 SHLFAINPLGGSVNFQ 508
           +H+F I P GG++  +
Sbjct: 505 THVFPITPYGGAMGVR 520

Drosophila melanogaster (taxid: 7227)

>sp|Q7ZWU5|WIPI2_XENLA WD repeat domain phosphoinositide-interacting protein 2 OS=Xenopus laevis GN=wipi2 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 22/175 (12%)

Query: 371 PGGKSNGTVNGH-----FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILL 425
           P G  + ++NG      +P + ++G V V D V+        AH SP++AL FD SG  L
Sbjct: 140 PSGLCSLSINGENCYLAYPGSASIGEVQVFDTVNLRAANMIPAHDSPLAALAFDASGTKL 199

Query: 426 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWI 484
            TAS +G  I +F I  G                L+  +RG+   V I  ++FS DS ++
Sbjct: 200 ATASEKGTVIRVFSIPEG--------------QKLFEFRRGVKRCVSICSLAFSMDSIFL 245

Query: 485 MISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQ 539
             SS+  T H+F +  +      +PT  ++T   G +  +   + P+   +M NQ
Sbjct: 246 SASSNTETVHIFKLETIKEKPPEEPT--SWTGYFGRVIMASTSYLPSQVTEMFNQ 298

Probable early component of the autophagy machinery being involved in formation of preautophagosomal structures and their maturation into mature phagosomes in response to PtdIns3P. May bind PtdIns3P.

Xenopus laevis (taxid: 8355)

>sp|Q75F47|ATG18_ASHGO Autophagy-related protein 18 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ATG18 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 129/307 (42%), Gaps = 49/307 (15%)

Query: 200 NGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEY 258
           N S  P  +   + +  S +  + F + I +V+ + SR+V + Q  Q++ +D  ++ + Y
Sbjct: 68  NPSMSPRRLRILNTKRHSVICEVTFPTTILAVKMNRSRLVVLLQE-QIYIYDINSMRLLY 126

Query: 259 AILT--NPIVMGHPSAGGIGIGYGPLAVGP----RWLAYSGSPVVVSNDGRVNPQ-HLMQ 311
            I T  NP               G +++ P     +LAY   P V+++  + N   + + 
Sbjct: 127 TIETSSNP--------------RGLISMSPSLENNYLAYPSPPKVINSGIKSNANTNNIG 172

Query: 312 SRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIP 371
             + S  A  GS    Y  + ++ L        DL   K S   +   P  ++S  S + 
Sbjct: 173 ISARSSIAEGGS---EYLDKGTEPLTDSSKAGADLNSVKASTETT-ISPGKEHSAGSGLN 228

Query: 372 GGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ 431
              S+GTV          G VI  ++ +        AHK  I+AL     G LL TAS +
Sbjct: 229 ATSSSGTVKN--------GDVIFFNLQTLQPTMVIEAHKGEIAALALSKDGTLLATASEK 280

Query: 432 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 491
           G  I +F +          C        +Y+ +RG     I  ++FSDD+ ++  SSS  
Sbjct: 281 GTIIRVFSV--------ETC------TKVYQFRRGTYPTRIYSLNFSDDNEFLAASSSNK 326

Query: 492 TSHLFAI 498
           T H+F +
Sbjct: 327 TVHIFKL 333

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q6BIL4|ATG18_DEBHA Autophagy-related protein 18 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ATG18 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 116/298 (38%), Gaps = 80/298 (26%)

Query: 203 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 262
           S P  +   + R QS +  L F S I  V+ S   + I    Q++ +D  T+++ + I T
Sbjct: 103 SSPRKLKIINTRRQSTICELIFPSTILQVKLSKSRMIILLEEQIYIYDVTTMKLLHTIET 162

Query: 263 NPIVMGHPSAGGIGIGYGPLAVGPR--WLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS 320
           +P      +  G+         G    +LAY   P  +++D  +           +G  +
Sbjct: 163 SP------NGNGLCTLSADNCDGKNNSYLAYPSPPKTITHDSLL----------VNGINT 206

Query: 321 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVN 380
           NG                                    +   QN++QS      SN    
Sbjct: 207 NGG-----------------------------------MNSIQNNIQSV-----SNS--- 223

Query: 381 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 440
                 + +G VI+ +  +   ++   AHKS ++A+     G LL TAS +G  + +F +
Sbjct: 224 -----PNRIGDVIIFNTTTLQPLSVIEAHKSALAAITLSTDGTLLATASDKGTIVRVFSV 278

Query: 441 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 498
             G+               LY+ +RG     I  +SFS D+ +++ +SS GT H+F +
Sbjct: 279 ATGL--------------KLYQFRRGTYPTKIFTLSFSFDNKYVLATSSSGTVHIFRL 322

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|P43601|ATG18_YEAST Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG18 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 136/319 (42%), Gaps = 51/319 (15%)

Query: 205 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTN 263
           P  +   + +  S +  + F + I SV+ + SR+V + Q  Q++ +D  T+ + + I TN
Sbjct: 72  PRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQE-QIYIYDINTMRLLHTIETN 130

Query: 264 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS 323
           P    +P     G+     +V   +L Y   P V++++ + +      + +    +  G+
Sbjct: 131 P----NPR----GLMAMSPSVANSYLVYPSPPKVINSEIKAH-----ATTNNITLSVGGN 177

Query: 324 RVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHF 383
               + ++      AG  ++ DL      QY S    D  +   S   GG S+   NG  
Sbjct: 178 TETSFKRDQQD---AGHSDISDL-----DQYSSFTKRDDADPTSSN--GGNSSIIKNGD- 226

Query: 384 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 443
                   VIV ++ +        AHK  I+A+     G L+ TAS +G  I +F I  G
Sbjct: 227 --------VIVFNLETLQPTMVIEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDIETG 278

Query: 444 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 503
                           +Y+ +RG     I  ISFS+DS ++ ++ S  T H+F    LG 
Sbjct: 279 --------------DKIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKTVHIFK---LGH 321

Query: 504 SVNFQPTDANFTTKHGAMA 522
           S++    D++ +    A A
Sbjct: 322 SMSNNKLDSDDSNMEEAAA 340

The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). May negatively regulate FAB1 activity by sequestering or masking VAC7 from FAB1. Necessary for proper vacuole morphology. Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Involved in correct ATG9 trafficking to the pre-autophagosomal structure. Might also be involved in premeiotic DNA replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A7A258|ATG18_YEAS7 Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG18 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 136/319 (42%), Gaps = 51/319 (15%)

Query: 205 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTN 263
           P  +   + +  S +  + F + I SV+ + SR+V + Q  Q++ +D  T+ + + I TN
Sbjct: 72  PRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQE-QIYIYDINTMRLLHTIETN 130

Query: 264 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS 323
           P    +P     G+     +V   +L Y   P V++++ + +      + +    +  G+
Sbjct: 131 P----NPR----GLMAMSPSVANSYLVYPSPPKVINSEIKAH-----ATTNNITLSVGGN 177

Query: 324 RVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHF 383
               + ++      AG  ++ DL      QY S    D  +   S   GG S+   NG  
Sbjct: 178 TETSFKRDQQD---AGHSDISDL-----DQYSSFTKRDDADPTSSN--GGNSSIIKNGD- 226

Query: 384 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 443
                   VIV ++ +        AHK  I+A+     G L+ TAS +G  I +F I  G
Sbjct: 227 --------VIVFNLETLQPTMVIEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDIETG 278

Query: 444 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 503
                           +Y+ +RG     I  ISFS+DS ++ ++ S  T H+F    LG 
Sbjct: 279 --------------DKIYQFRRGTYATRIYSISFSEDSQYLAVTGSSKTVHIFK---LGH 321

Query: 504 SVNFQPTDANFTTKHGAMA 522
           S++    D++ +    A A
Sbjct: 322 SMSNNKLDSDDSNMEEAAA 340

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy. Involved in correct ATG9 trafficking to the pre-autophagosomal structure. Might also be involved in premeiotic DNA replication.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

>sp|Q5ZHN3|WIPI2_CHICK WD repeat domain phosphoinositide-interacting protein 2 OS=Gallus gallus GN=WIPI2 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 17/158 (10%)

Query: 383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 442
           +P +  +G V V D ++        AH SP++AL FD SG  L TAS +G  I +F I  
Sbjct: 157 YPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPE 216

Query: 443 GILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPL 501
           G                L+  +RG+   V I  ++FS D  ++  SS+  T H+F +  +
Sbjct: 217 G--------------QKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKLETV 262

Query: 502 GGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQ 539
                 +PT   +T   G +  +   + P+   +M NQ
Sbjct: 263 KEKPQEEPT--TWTGYFGKVLMASTSYLPSQVTEMFNQ 298

Probable early component of the autophagy machinery being involved in formation of preautophagosomal structures and their maturation into mature phagosomes in response to PtdIns3P. May bind PtdIns3P.

Gallus gallus (taxid: 9031)

>sp|Q54NA2|ATG18_DICDI Autophagy-related protein 18 OS=Dictyostelium discoideum GN=atg18 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 14/117 (11%)

Query: 383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 442
           +P + N G ++V D+++   +   +AHKS ISAL     G LL TAS +G  I +F +  
Sbjct: 151 YPASQNNGNILVMDVLTLETVNLIQAHKSQISALALSQDGTLLATASDKGTVIRVFAL-- 208

Query: 443 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 499
                    +   S+      +RG   A+I  ++FS D  ++ +SS  GT H+F I+
Sbjct: 209 ------PYANKSLSF------RRGSIPAIIHSMTFSLDGRYLCVSSDTGTIHIFKID 253

May be involved in cytoplasm to vacuole transport and autophagy.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	921
255563665	891	breast carcinoma amplified sequence, put	0.959	0.992	0.708	0.0
225461122	922	PREDICTED: uncharacterized protein LOC10	0.977	0.976	0.687	0.0
147808145	893	hypothetical protein VITISV_005771 [Viti	0.960	0.991	0.694	0.0
357452689	914	Autophagy-related protein [Medicago trun	0.913	0.920	0.633	0.0
357452691	901	Autophagy-related protein [Medicago trun	0.913	0.933	0.633	0.0
224126297	742	predicted protein [Populus trichocarpa]	0.769	0.955	0.697	0.0
224117404	702	predicted protein [Populus trichocarpa]	0.762	1.0	0.705	0.0
356545163	900	PREDICTED: uncharacterized protein LOC10	0.929	0.951	0.600	0.0
356514980	901	PREDICTED: uncharacterized protein LOC10	0.933	0.954	0.591	0.0
449468504	907	PREDICTED: uncharacterized protein LOC10	0.972	0.987	0.584	0.0

>gi|255563665|ref|XP_002522834.1| breast carcinoma amplified sequence, putative [Ricinus communis] gi|223537918|gb|EEF39532.1| breast carcinoma amplified sequence, putative [Ricinus communis]

 Score = 1237 bits (3201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/900 (70%), Positives = 717/900 (79%), Gaps = 16/900 (1%)

Query: 29  MRNSTDGPKPQNGVVSRSTK----SPFRAISSYFRIVSSGASTVARSAVSVASSIVERDD 84
           MRNS DG   +N +  R+      S FRAISSY RIVSSGASTVARSA SVA SIV+RDD
Sbjct: 1   MRNSNDGQNHKN-LQGRANNGFLPSSFRAISSYLRIVSSGASTVARSAASVAQSIVDRDD 59

Query: 85  ESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQ 144
           ++S+DQV WAGFDKL+ E G  RRVLLLGYRSGFQVWDVEEADNV DLVSR+DGPVSFMQ
Sbjct: 60  DASNDQVHWAGFDKLDDE-GDVRRVLLLGYRSGFQVWDVEEADNVRDLVSRHDGPVSFMQ 118

Query: 145 MLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSV 204
           +LP+PI SKRS DKFAE RP+LV C DG+ S    + DGL + C G+  N H+ G+G+ V
Sbjct: 119 LLPKPIASKRSEDKFAESRPILVVCTDGTISGVNDISDGLPSQCYGSIPNCHESGSGNFV 178

Query: 205 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNP 264
           PT+V FYSLRSQSY+HMLKFRS +YSVRCSSR+VAI QAAQ+HCFDA TLE EY ILTNP
Sbjct: 179 PTIVRFYSLRSQSYIHMLKFRSIVYSVRCSSRIVAISQAAQIHCFDATTLEREYTILTNP 238

Query: 265 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSR 324
           IV G+P +GG+G  YGPLAVGPRWLAYSGSPV +S+ GRV+PQHL  S SFSGF SNGS 
Sbjct: 239 IVTGYPGSGGLG--YGPLAVGPRWLAYSGSPVAISSSGRVSPQHLTSSASFSGFNSNGSL 296

Query: 325 VAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFP 384
           VAHYAKESSK LAAGIV LGD+GYKK S+YCSE LPDS +S QSA PG K+N TVNGH P
Sbjct: 297 VAHYAKESSKQLAAGIVMLGDMGYKKFSRYCSELLPDSHSSFQSANPGWKANSTVNGHLP 356

Query: 385 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI 444
           DADNVGMV+VRDIV K VIAQFRAH+SPISALCFDPSG LLVTASV GHNIN+FKI+PGI
Sbjct: 357 DADNVGMVVVRDIVGKLVIAQFRAHRSPISALCFDPSGTLLVTASVHGHNINVFKIMPGI 416

Query: 445 LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 504
            G+SSA DAG SY HLYRLQRG TNAVIQDISFSDDSNWIMISSSRGT+HLFAINP GG 
Sbjct: 417 QGSSSAGDAGASYTHLYRLQRGFTNAVIQDISFSDDSNWIMISSSRGTNHLFAINPFGGP 476

Query: 505 VNFQPTDANFTTKH---GAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGN 561
           VNFQ   AN++ K+   G M KS VRWP +LGLQM NQQSLCASGPPVTLSVVSRIRNGN
Sbjct: 477 VNFQTLIANYSAKNSESGVMTKSAVRWPSSLGLQMHNQQSLCASGPPVTLSVVSRIRNGN 536

Query: 562 NGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCM 621
           NGW+G+V+GAAAAATGR+SSLSGAIASSFHNCKGN++ Y  G+ LK K HLLVFSPSGCM
Sbjct: 537 NGWKGSVTGAAAAATGRLSSLSGAIASSFHNCKGNNDLYLDGTILKSKYHLLVFSPSGCM 596

Query: 622 IQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNIDIY 681
           IQY LRIS G+D    VPGLG+A++SVPE D RLVVEAIQKWNICQK  RREREDN+DIY
Sbjct: 597 IQYVLRISAGIDSMAVVPGLGTAFESVPESDGRLVVEAIQKWNICQKLNRREREDNVDIY 656

Query: 682 GDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLW 741
           G+NG  DSNKIYPE  K GN    E  G   K K++PE+KHHLYISEAELQMH P   LW
Sbjct: 657 GENGISDSNKIYPEGKKKGNSVHPEGMGATIKEKINPEEKHHLYISEAELQMHQPHTALW 716

Query: 742 AKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQAR 801
           AKP+IYFQ MM +  KM  EN + GEIE+ER PTR IEARSKDLVPVFDY +      AR
Sbjct: 717 AKPEIYFQPMMTEGIKMDGENAMLGEIEVERLPTRTIEARSKDLVPVFDYHR-----YAR 771

Query: 802 VPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSVTVNGALAAEPNIGIEETSLDCPQ 861
           VP +  N N +  HQRS LSENG +S RSSS SLD +T  GA+AAE   G+EET  +  +
Sbjct: 772 VPALDNNINVQPQHQRSVLSENGRISCRSSSCSLDCMTDCGAVAAERRNGVEETGWNDSR 831

Query: 862 MPVDTKGFVNNSVSPKTKTRHEIVNNSESLRVEAQLKFVNSKIEGLRMENHFEDEGDEFD 921
           MP +  G+VN+S   K  T  + VN+ +SLR EAQLK VNS   G RMENHFEDEGDEFD
Sbjct: 832 MPSEVMGYVNSSDGSKIDTPLDNVNSRDSLRTEAQLKLVNSNNGGPRMENHFEDEGDEFD 891

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461122|ref|XP_002279886.1| PREDICTED: uncharacterized protein LOC100265881 [Vitis vinifera]

 Score = 1208 bits (3126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/919 (68%), Positives = 719/919 (78%), Gaps = 19/919 (2%)

Query: 14  VFWVFVNFIVRLFS---GMRNSTDGPKPQNGVVSRSTKSPFRAISSYFRIVSSGASTVAR 70
           VF   +  +V LF    GMRN+ DGPKP +G  +    + FRAIS Y RIVSSGASTVA 
Sbjct: 12  VFHFLLGVLVSLFLCVLGMRNN-DGPKPHSGRTNGFIPTSFRAISGYLRIVSSGASTVAS 70

Query: 71  SAVSVASSIVERDDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVH 130
           +  S ASSIV+RDD++SHDQV WAGFDKLE +    R+VLLLGYRSGFQVWDVEEADNV 
Sbjct: 71  TVRSAASSIVDRDDDASHDQVQWAGFDKLECDGNINRQVLLLGYRSGFQVWDVEEADNVR 130

Query: 131 DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNG 190
           DLVSR+DGPVSF+QMLP P+ SK S+DKFA+ RPLLV C+DGS S G  +QDG  T    
Sbjct: 131 DLVSRHDGPVSFLQMLPNPVASKGSKDKFADSRPLLVVCSDGSLSGGGNIQDGFGTPYKE 190

Query: 191 TSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFD 250
              N HD  NGS++PTVV FYSL+SQS+VH LKFRS +YSVRCSSRVVAI QAAQ+HCFD
Sbjct: 191 GIPNSHDTVNGSAMPTVVRFYSLKSQSFVHFLKFRSVVYSVRCSSRVVAISQAAQIHCFD 250

Query: 251 AATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLM 310
            ATLE EY ILTNPIV G  S+G   IGYGPLAVGPRWLAYSGSPVVVSN GRV+PQHL 
Sbjct: 251 VATLEREYTILTNPIVTGSLSSG--SIGYGPLAVGPRWLAYSGSPVVVSNYGRVSPQHLT 308

Query: 311 QSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAI 370
            S SFSG ASNGS VAHYAKESSK LAAGIV+LGD+GYKKLS+YCSE LPDS N   S  
Sbjct: 309 TSGSFSGSASNGSLVAHYAKESSKQLAAGIVSLGDIGYKKLSRYCSELLPDSNNLPHSGS 368

Query: 371 --PGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTA 428
             PG K NG VN HFPDADNVGMVIVRDI++K+VI QF+AHKSPISALCFDPSG LLVTA
Sbjct: 369 PGPGWKGNGAVNAHFPDADNVGMVIVRDIIAKSVITQFKAHKSPISALCFDPSGTLLVTA 428

Query: 429 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 488
           SVQGHNIN+F+I+PG+ G+SS  D   SY HLYRLQRG TNAVIQDISFSDDSNWIMISS
Sbjct: 429 SVQGHNINVFRIMPGVAGSSSGSDTCASYAHLYRLQRGFTNAVIQDISFSDDSNWIMISS 488

Query: 489 SRGTSHLFAINPLGGSVNFQPTDANFTTKH---GAMAKSGVRWPPNLGLQMPNQQSLCAS 545
           SRGTSHLFAI+P GGSVN QP+D++ T K+   G   K  VRWPPN GLQM +QQ+ CAS
Sbjct: 489 SRGTSHLFAISPSGGSVNLQPSDSSPTAKNSGLGVPTKPAVRWPPNSGLQMLSQQNFCAS 548

Query: 546 GPPVTLSVVSRIRNGNNGWRGTVSG---AAAAATGRVSSLSGAIASSFHNCKGNSETYAA 602
           GPPVTLSVVSRIR+GNNGWRGTV+G   AAAAATGR+SSLSGAIASSFHNCK N + ++ 
Sbjct: 549 GPPVTLSVVSRIRSGNNGWRGTVTGAAAAAAAATGRMSSLSGAIASSFHNCKAN-DLFSN 607

Query: 603 GSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQK 662
            SSLK K HLLVFSPSGC+IQYALRISTG+D T  V GL + Y+S P+ D RLVVEA+QK
Sbjct: 608 SSSLKEKYHLLVFSPSGCVIQYALRISTGIDSTTVVSGLSTGYESTPDGDGRLVVEAVQK 667

Query: 663 WNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKH 722
           WN+CQKQ RREREDN DIYG+NG  DS+KI+PE +K  N    E    + K+K+SPE++H
Sbjct: 668 WNVCQKQHRREREDNTDIYGENGNTDSSKIFPEGIKKENAFHPETRSGVSKSKISPEERH 727

Query: 723 HLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARS 782
           HLYISEAELQMH  + PLWAKP+IYFQ+MM+      EEN L GEIE+ERFPTRMIEARS
Sbjct: 728 HLYISEAELQMHQAQNPLWAKPEIYFQTMMVDGL---EENVLGGEIEVERFPTRMIEARS 784

Query: 783 KDLVPVFDYLQSPKFSQARVPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSVTVNG 842
           KDLVPVFDYLQ+PKF +ARVP +  N N   LH +SG SENG LSRRSSSGSLD V   G
Sbjct: 785 KDLVPVFDYLQTPKFQKARVPVLDSNINGHPLHHKSGPSENGRLSRRSSSGSLDLVADGG 844

Query: 843 ALAAEPNIGIEETSLDCPQMPVDTKGFVNNSVSPKTKTRHEIVNNSESLRVEAQLKFVNS 902
              AE   GIEET  +  +MP   KGFVN++  PKTKT  + VNN ES ++EAQ KFVN+
Sbjct: 845 VAVAEHPTGIEETGWNGLRMPETDKGFVNSNDRPKTKTL-KTVNNRESFKMEAQHKFVNN 903

Query: 903 KIEGLRMENHFEDEGDEFD 921
             +GL +EN  ED  DEFD
Sbjct: 904 NKDGLNVENQLEDADDEFD 922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147808145|emb|CAN75263.1| hypothetical protein VITISV_005771 [Vitis vinifera]

 Score = 1204 bits (3115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/901 (69%), Positives = 711/901 (78%), Gaps = 16/901 (1%)

Query: 29  MRNSTDGPKPQNGVVSRSTKSPFRAISSYFRIVSSGASTVARSAVSVASSIVERDDESSH 88
           MRN+ DGPKP +G  +    + FRAIS Y RIVSSGASTVA +  S ASSIV+RDD++SH
Sbjct: 1   MRNN-DGPKPHSGRTNGFIPTSFRAISGYLRIVSSGASTVASTVRSAASSIVDRDDDASH 59

Query: 89  DQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPR 148
           DQV WAGFDKLE +    R+VLLLGYRSGFQVWDVEEADNV DLVSR+DGPVSF+QMLP 
Sbjct: 60  DQVQWAGFDKLECDGNINRQVLLLGYRSGFQVWDVEEADNVRDLVSRHDGPVSFLQMLPN 119

Query: 149 PITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV 208
           P+ SK S+DKFA+ RPLLV C+DGS S G  +QDG  T       N HD  NGS++PTVV
Sbjct: 120 PVASKGSKDKFADSRPLLVVCSDGSLSGGGNIQDGFGTPYKEGIPNSHDTVNGSAMPTVV 179

Query: 209 HFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMG 268
            FYSL+SQS+VH LKFRS +YSVRCSSRVVAI QAAQ+HCFD ATLE EY ILTNPIV G
Sbjct: 180 RFYSLKSQSFVHFLKFRSVVYSVRCSSRVVAISQAAQIHCFDVATLEREYTILTNPIVTG 239

Query: 269 HPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHY 328
             S+G   IGYGPLAVGPRWLAYSGSPVVVSN GRV+PQHL  S SFSG ASNGS VAHY
Sbjct: 240 SLSSG--SIGYGPLAVGPRWLAYSGSPVVVSNYGRVSPQHLTTSGSFSGSASNGSLVAHY 297

Query: 329 AKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAI--PGGKSNGTVNGHFPDA 386
           AKESSK LAAGIV+LGD+GYKKLS+YCSE LPDS N   S    PG K NG VN HFPDA
Sbjct: 298 AKESSKQLAAGIVSLGDIGYKKLSRYCSELLPDSNNLPHSGSPGPGWKGNGAVNAHFPDA 357

Query: 387 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 446
           DNVGMVIVRDI++K+VI QF+AHKSPISALCFDPSG LLVTASVQGHNIN+F+I+PG+ G
Sbjct: 358 DNVGMVIVRDIIAKSVITQFKAHKSPISALCFDPSGTLLVTASVQGHNINVFRIMPGVAG 417

Query: 447 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 506
           +SS  D   SY HLYRLQRG TNAVIQDISFSDDSNWIMISSSRGTSHLFAI+P GGSVN
Sbjct: 418 SSSGSDTCASYAHLYRLQRGFTNAVIQDISFSDDSNWIMISSSRGTSHLFAISPSGGSVN 477

Query: 507 FQPTDANFTTKH---GAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNG 563
            QP+D++ T K+   G   K  VRWPPN GLQM +QQ+ CASGPPVTLSVVSRIR+GNNG
Sbjct: 478 LQPSDSSPTAKNSGLGVPTKPAVRWPPNSGLQMLSQQNFCASGPPVTLSVVSRIRSGNNG 537

Query: 564 WRGTVSG---AAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGC 620
           WRGTV+G   AAAAATGR+SSLSGAIASSFHNCK N + ++  SSLK K HLLVFSPSGC
Sbjct: 538 WRGTVTGAAAAAAAATGRMSSLSGAIASSFHNCKAN-DLFSNSSSLKEKYHLLVFSPSGC 596

Query: 621 MIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARREREDNIDI 680
           +IQYALRISTG+D T  V GL + Y+S P+ D RLVVEA+QKWN+CQKQ RREREDN DI
Sbjct: 597 VIQYALRISTGIDSTTVVSGLSTGYESTPDGDGRLVVEAVQKWNVCQKQHRREREDNTDI 656

Query: 681 YGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPL 740
           YG+NG  DS+KI+PE +K  N    E    + K+K+SPE++HHLYISEAELQMH  + PL
Sbjct: 657 YGENGNTDSSKIFPEGIKKENAFHPETRSGVSKSKISPEERHHLYISEAELQMHQAQNPL 716

Query: 741 WAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQA 800
           WAKP+IYFQ+MM+      EEN L GEIE+ERFPTRMIEARSKDLVPVFDYLQ+PKF +A
Sbjct: 717 WAKPEIYFQTMMVDGL---EENVLGGEIEVERFPTRMIEARSKDLVPVFDYLQTPKFQKA 773

Query: 801 RVPTVGRNSNERLLHQRSGLSENGLLSRRSSSGSLDSVTVNGALAAEPNIGIEETSLDCP 860
           RVP +  N N   LH +SG SENG LSRRSSSGSLD V   G   AE   GIEET  +  
Sbjct: 774 RVPVLDSNINGHPLHHKSGPSENGRLSRRSSSGSLDLVADGGVAVAEHPTGIEETGWNGL 833

Query: 861 QMPVDTKGFVNNSVSPKTKTRHEIVNNSESLRVEAQLKFVNSKIEGLRMENHFEDEGDEF 920
           +MP   KGFVN++  PKTKT  + VNN ES ++EAQ KFVN+  +GL +EN  ED  DEF
Sbjct: 834 RMPETDKGFVNSNDRPKTKTL-KTVNNRESFKMEAQHKFVNNNKDGLNVENQLEDADDEF 892

Query: 921 D 921
           D
Sbjct: 893 D 893

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452689|ref|XP_003596621.1| Autophagy-related protein [Medicago truncatula] gi|355485669|gb|AES66872.1| Autophagy-related protein [Medicago truncatula]

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/859 (63%), Positives = 642/859 (74%), Gaps = 18/859 (2%)

Query: 51  FRAISSYFRIVSSGASTVARSAVSVASSIVERDDESSHDQVLWAGFDKLESEAGATRRVL 110
           FRAISSY RIVSSGASTVARSA SVASSIV+RDD + HDQV+WAGFDKLE E    ++VL
Sbjct: 36  FRAISSYLRIVSSGASTVARSAASVASSIVDRDDVADHDQVIWAGFDKLEGEGDIVQQVL 95

Query: 111 LLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCA 170
           LLGYRSGFQVW V+E++NV D+VS++DGPVSFMQM+P PI SK+S DKFA  RPLLV CA
Sbjct: 96  LLGYRSGFQVWHVDESNNVRDVVSKHDGPVSFMQMVPNPIASKKSEDKFASSRPLLVVCA 155

Query: 171 DGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYS 230
           DG    G+ ++DGL  + NGT++N HD  NG+ +PT V FYS++S SYVH++KFRS +YS
Sbjct: 156 DGFFGGGSNIKDGLTGSPNGTASNSHDQMNGNYMPTTVQFYSMKSHSYVHVMKFRSVVYS 215

Query: 231 VRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLA 290
           VRCSSR++A+ Q+ Q+HCF+A TLE EY +LTNPI +  P +G  GIGYGPLAVGPRWLA
Sbjct: 216 VRCSSRIIAVSQSTQIHCFNATTLEREYTLLTNPIALSCPGSG--GIGYGPLAVGPRWLA 273

Query: 291 YSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKK 350
           YSGSPV VS    V+PQHL  S SF GF+SN S +AHYAKESSKHLA GIV LGD+GYKK
Sbjct: 274 YSGSPVAVSTSSHVSPQHLTPSASFPGFSSNSSLIAHYAKESSKHLATGIVTLGDMGYKK 333

Query: 351 LSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK 410
           LS+YCS    D+  S+QS   G K NG++NGH  D DNVGMVIV+DIV+KNV+AQFRAHK
Sbjct: 334 LSRYCS----DNIGSVQSVNSGSKVNGSINGHSADLDNVGMVIVKDIVTKNVVAQFRAHK 389

Query: 411 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 470
           SPISALCFDPSG +LVTASVQGHNIN+FKI+P +   SSA DAG S+VHLYRLQRG TNA
Sbjct: 390 SPISALCFDPSGTILVTASVQGHNINVFKIMP-LRENSSASDAGPSHVHLYRLQRGFTNA 448

Query: 471 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKS---GVR 527
           VIQDISFSDDS WIMISSSRGT+HLFAINP GG VN Q  D NF TK   ++ +    VR
Sbjct: 449 VIQDISFSDDSKWIMISSSRGTNHLFAINPQGGYVNIQSNDDNFNTKTNGLSTATNQSVR 508

Query: 528 WPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIA 587
               L +QMP QQSL   GPP+TLSVVSRIRNGNNGWRGTVSGAAAAATGR S L GAIA
Sbjct: 509 RASILAVQMPKQQSLYVGGPPITLSVVSRIRNGNNGWRGTVSGAAAAATGRKSPLYGAIA 568

Query: 588 SSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDS 647
           SSF NCKG+   Y  G++ K  +HLLVFSPSG MIQYALR  TG D  + V GL  A++S
Sbjct: 569 SSFRNCKGSGAVYGDGNNSKANHHLLVFSPSGSMIQYALRTITGQDSAV-VSGLSPAHES 627

Query: 648 VPEDDPRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEA 707
            P+ + RLVVEA+ KWNIC   +RREREDN+DIYG+NG  DSNKIYPE V +        
Sbjct: 628 TPQAEARLVVEAMHKWNICHSHSRREREDNVDIYGENGIADSNKIYPEVVDEDIIIPKMR 687

Query: 708 NGVIEKTKVSP--EDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLK 765
           NGV   TKV+P  +++HHLYISEAELQMH  +IPLW KP+IYF  M+ +   M EE+   
Sbjct: 688 NGV---TKVNPCLKEEHHLYISEAELQMHQTQIPLWVKPEIYFNPMLKESTIMDEEDASG 744

Query: 766 GEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNSNERLLHQRSGLSENGL 825
           GE EIER PT MIEAR KDLVP+F+Y+Q+PK  Q R P + R  NE++LH RS    NG 
Sbjct: 745 GEFEIERIPTCMIEARPKDLVPIFNYMQAPKLQQTRAPAMDRKINEQVLHHRSESYGNGR 804

Query: 826 LSRRSSSGSLDSV-TVNGALAAEPNIGIEETSLDCPQMPVDTKGFVNNSVSPKTKTRHEI 884
           +S RS S + + +    G +  E    IE T      MP +T GFVNN+ + K  T+HEI
Sbjct: 805 ISPRSVSETPEYMNNYGGEVITEHENHIEGTEWGNHVMPSETTGFVNNNDNLKPNTQHEI 864

Query: 885 VNN-SESLRVEAQLKFVNS 902
           VNN  E L + AQL  VNS
Sbjct: 865 VNNRKEHLNMGAQLMLVNS 883

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452691|ref|XP_003596622.1| Autophagy-related protein [Medicago truncatula] gi|355485670|gb|AES66873.1| Autophagy-related protein [Medicago truncatula]

 Score = 1046 bits (2704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/859 (63%), Positives = 642/859 (74%), Gaps = 18/859 (2%)

Query: 51  FRAISSYFRIVSSGASTVARSAVSVASSIVERDDESSHDQVLWAGFDKLESEAGATRRVL 110
           FRAISSY RIVSSGASTVARSA SVASSIV+RDD + HDQV+WAGFDKLE E    ++VL
Sbjct: 36  FRAISSYLRIVSSGASTVARSAASVASSIVDRDDVADHDQVIWAGFDKLEGEGDIVQQVL 95

Query: 111 LLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCA 170
           LLGYRSGFQVW V+E++NV D+VS++DGPVSFMQM+P PI SK+S DKFA  RPLLV CA
Sbjct: 96  LLGYRSGFQVWHVDESNNVRDVVSKHDGPVSFMQMVPNPIASKKSEDKFASSRPLLVVCA 155

Query: 171 DGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYS 230
           DG    G+ ++DGL  + NGT++N HD  NG+ +PT V FYS++S SYVH++KFRS +YS
Sbjct: 156 DGFFGGGSNIKDGLTGSPNGTASNSHDQMNGNYMPTTVQFYSMKSHSYVHVMKFRSVVYS 215

Query: 231 VRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLA 290
           VRCSSR++A+ Q+ Q+HCF+A TLE EY +LTNPI +  P +G  GIGYGPLAVGPRWLA
Sbjct: 216 VRCSSRIIAVSQSTQIHCFNATTLEREYTLLTNPIALSCPGSG--GIGYGPLAVGPRWLA 273

Query: 291 YSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKK 350
           YSGSPV VS    V+PQHL  S SF GF+SN S +AHYAKESSKHLA GIV LGD+GYKK
Sbjct: 274 YSGSPVAVSTSSHVSPQHLTPSASFPGFSSNSSLIAHYAKESSKHLATGIVTLGDMGYKK 333

Query: 351 LSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK 410
           LS+YCS    D+  S+QS   G K NG++NGH  D DNVGMVIV+DIV+KNV+AQFRAHK
Sbjct: 334 LSRYCS----DNIGSVQSVNSGSKVNGSINGHSADLDNVGMVIVKDIVTKNVVAQFRAHK 389

Query: 411 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 470
           SPISALCFDPSG +LVTASVQGHNIN+FKI+P +   SSA DAG S+VHLYRLQRG TNA
Sbjct: 390 SPISALCFDPSGTILVTASVQGHNINVFKIMP-LRENSSASDAGPSHVHLYRLQRGFTNA 448

Query: 471 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKS---GVR 527
           VIQDISFSDDS WIMISSSRGT+HLFAINP GG VN Q  D NF TK   ++ +    VR
Sbjct: 449 VIQDISFSDDSKWIMISSSRGTNHLFAINPQGGYVNIQSNDDNFNTKTNGLSTATNQSVR 508

Query: 528 WPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIA 587
               L +QMP QQSL   GPP+TLSVVSRIRNGNNGWRGTVSGAAAAATGR S L GAIA
Sbjct: 509 RASILAVQMPKQQSLYVGGPPITLSVVSRIRNGNNGWRGTVSGAAAAATGRKSPLYGAIA 568

Query: 588 SSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDS 647
           SSF NCKG+   Y  G++ K  +HLLVFSPSG MIQYALR  TG D  + V GL  A++S
Sbjct: 569 SSFRNCKGSGAVYGDGNNSKANHHLLVFSPSGSMIQYALRTITGQDSAV-VSGLSPAHES 627

Query: 648 VPEDDPRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEA 707
            P+ + RLVVEA+ KWNIC   +RREREDN+DIYG+NG  DSNKIYPE V +        
Sbjct: 628 TPQAEARLVVEAMHKWNICHSHSRREREDNVDIYGENGIADSNKIYPEVVDEDIIIPKMR 687

Query: 708 NGVIEKTKVSP--EDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLK 765
           NGV   TKV+P  +++HHLYISEAELQMH  +IPLW KP+IYF  M+ +   M EE+   
Sbjct: 688 NGV---TKVNPCLKEEHHLYISEAELQMHQTQIPLWVKPEIYFNPMLKESTIMDEEDASG 744

Query: 766 GEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNSNERLLHQRSGLSENGL 825
           GE EIER PT MIEAR KDLVP+F+Y+Q+PK  Q R P + R  NE++LH RS    NG 
Sbjct: 745 GEFEIERIPTCMIEARPKDLVPIFNYMQAPKLQQTRAPAMDRKINEQVLHHRSESYGNGR 804

Query: 826 LSRRSSSGSLDSV-TVNGALAAEPNIGIEETSLDCPQMPVDTKGFVNNSVSPKTKTRHEI 884
           +S RS S + + +    G +  E    IE T      MP +T GFVNN+ + K  T+HEI
Sbjct: 805 ISPRSVSETPEYMNNYGGEVITEHENHIEGTEWGNHVMPSETTGFVNNNDNLKPNTQHEI 864

Query: 885 VNN-SESLRVEAQLKFVNS 902
           VNN  E L + AQL  VNS
Sbjct: 865 VNNRKEHLNMGAQLMLVNS 883

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126297|ref|XP_002319804.1| predicted protein [Populus trichocarpa] gi|222858180|gb|EEE95727.1| predicted protein [Populus trichocarpa]

 Score = 1036 bits (2679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/757 (69%), Positives = 597/757 (78%), Gaps = 48/757 (6%)

Query: 49  SPFRAISSYFRIVSSGASTVARSAVSVASSIVERDDESSHDQVLWAGFDKLESEAGATRR 108
           S FRAISSY RIVSSGASTVARSA SVA SIV+RDD+++HDQV WAGFDKLE +    R 
Sbjct: 32  SSFRAISSYLRIVSSGASTVARSAASVAQSIVDRDDDANHDQVRWAGFDKLEGDDDVIRH 91

Query: 109 VLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVF 168
           VLLLGY+SGF+VWDVEEA+NV DLVSR+DGPVSF+QMLP+P+TS+ S+DKFA  RPLLV 
Sbjct: 92  VLLLGYQSGFEVWDVEEANNVRDLVSRHDGPVSFLQMLPKPVTSEGSQDKFAYNRPLLVV 151

Query: 169 CADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPI 228
           C+DG+       QDG AT+CNG  +N +   NGS+VPTVV FYSLRSQSYVH+LKFRS +
Sbjct: 152 CSDGA-------QDGPATSCNGNVSNNNYPVNGSTVPTVVRFYSLRSQSYVHVLKFRSAV 204

Query: 229 YSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRW 288
           YSVRCSSR+VAI Q+AQ+HCF+A TLE EY ILTNP+VMG P++GGIG  YGPLAVGPRW
Sbjct: 205 YSVRCSSRIVAISQSAQIHCFNATTLEREYTILTNPMVMGSPASGGIG--YGPLAVGPRW 262

Query: 289 LAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGY 348
           LAYSGSPVVVSN G +NPQHL  S SFSGF SNGS VAHYAKESSK LAAGIV LGD+GY
Sbjct: 263 LAYSGSPVVVSNSGCINPQHLTSSMSFSGFTSNGSLVAHYAKESSKQLAAGIVTLGDMGY 322

Query: 349 KKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA 408
           KKLS YCSE LPDS  SLQS  PG KSNGTVNGHFPDADN+GMV+VRDIVSK VIAQFRA
Sbjct: 323 KKLSSYCSELLPDSHGSLQSGNPGWKSNGTVNGHFPDADNIGMVVVRDIVSKLVIAQFRA 382

Query: 409 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 468
           HKSPISALCFD SG LLVTAS+QGHNIN+FKI+PG+ G+SS    G SYVHLYRLQRG T
Sbjct: 383 HKSPISALCFDSSGTLLVTASIQGHNINVFKIMPGLQGSSS---TGASYVHLYRLQRGFT 439

Query: 469 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRW 528
           NAVIQDISFSDDS+WIMISSSRGTSHLFAINPLGG+                        
Sbjct: 440 NAVIQDISFSDDSSWIMISSSRGTSHLFAINPLGGT------------------------ 475

Query: 529 PPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIAS 588
                       SLCA+G  VTLS VSRIRNGNNGWRGTV+GAAAAATGR+ SLSGAIAS
Sbjct: 476 ------------SLCATGRAVTLSAVSRIRNGNNGWRGTVTGAAAAATGRLGSLSGAIAS 523

Query: 589 SFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSV 648
           SFH CKGN++ Y  G+S K K HLLVFS SG MIQY LRI  G+D T    GL   Y+S 
Sbjct: 524 SFHKCKGNNDMYGDGTSFKSKYHLLVFSSSGSMIQYTLRILDGIDSTPVGSGLNVNYESA 583

Query: 649 PEDDPRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEAN 708
            E++ RLVVEA+QKWNICQKQ RR+REDN+DIYGDNG  DSNKI+PE +K GN    E  
Sbjct: 584 AENEGRLVVEAMQKWNICQKQNRRDREDNVDIYGDNGNSDSNKIHPEGIKKGNSIYPEVR 643

Query: 709 GVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEI 768
           G +  TK+SPE+KHHLYISEAELQMH    PLWAKP+IYFQSMM +   + + + ++GEI
Sbjct: 644 GAVTNTKISPEEKHHLYISEAELQMHQACFPLWAKPEIYFQSMMTEGIDVNDADAMQGEI 703

Query: 769 EIERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTV 805
           EIER P RMIEARSKDLVP+FDYLQ+PKF  +R   +
Sbjct: 704 EIERIPARMIEARSKDLVPLFDYLQTPKFPHSRCAEI 740

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117404|ref|XP_002317566.1| predicted protein [Populus trichocarpa] gi|222860631|gb|EEE98178.1| predicted protein [Populus trichocarpa]

 Score = 1029 bits (2660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/748 (70%), Positives = 596/748 (79%), Gaps = 46/748 (6%)

Query: 49  SPFRAISSYFRIVSSGASTVARSAVSVASSIVERDDESSHDQVLWAGFDKLESEAGATRR 108
           S FRAISSY RIVSSGASTVARSA SVA SIV+RD +++HDQV WAGFDKLE +    R+
Sbjct: 1   SSFRAISSYLRIVSSGASTVARSAASVAQSIVDRDADANHDQVCWAGFDKLEGDDDVIRQ 60

Query: 109 VLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVF 168
           VLLLGY+SGFQVWDVEEA+NV DLVSR+DGPVSF+QMLP+PITSKRS DKFA  RPLLV 
Sbjct: 61  VLLLGYQSGFQVWDVEEANNVRDLVSRHDGPVSFLQMLPKPITSKRSEDKFAYNRPLLVV 120

Query: 169 CADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPI 228
           CADG       VQDG         +N HD  NGS+V TVV FYSLRSQSYVH+LKFRS +
Sbjct: 121 CADG-------VQDG-------NVSNNHDPVNGSTVSTVVRFYSLRSQSYVHVLKFRSAV 166

Query: 229 YSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRW 288
           YSVRCSSR+VAI Q++QVHCF+A TL+ EY ILTNP+VMG P +GGIG  YGPLAVGPRW
Sbjct: 167 YSVRCSSRIVAISQSSQVHCFNATTLQREYTILTNPMVMGSPGSGGIG--YGPLAVGPRW 224

Query: 289 LAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGY 348
           LAYSGSPVVVSN GRV+PQHL  S SFSGF SNGS VAHYAKESSK LAAGIV LGD+GY
Sbjct: 225 LAYSGSPVVVSNSGRVSPQHLTPSVSFSGFTSNGSLVAHYAKESSKQLAAGIVTLGDMGY 284

Query: 349 KKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA 408
           K+LS+YCSE LPDS  SLQS  P  KSNGTVNG+FPDADN+GMV+VRDIVSK  IAQFRA
Sbjct: 285 KRLSRYCSELLPDSHGSLQSGSPSWKSNGTVNGYFPDADNIGMVVVRDIVSKLAIAQFRA 344

Query: 409 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 468
           HKSPISALCFD SG LLVTASVQGHNIN+FKI+PG+ G+SS   AG S++HLYRLQRG T
Sbjct: 345 HKSPISALCFDSSGTLLVTASVQGHNINVFKIMPGLQGSSS---AGASHIHLYRLQRGFT 401

Query: 469 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRW 528
           NAVIQDISFSDDS WIMISSSRGTSHLFAINPLGGS+NFQ +++  T             
Sbjct: 402 NAVIQDISFSDDSYWIMISSSRGTSHLFAINPLGGSMNFQSSESGHT------------- 448

Query: 529 PPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIAS 588
                        LCASGPP+TLS VSRIRNGNNGWRGTV+GAAAAATGR   LSGAIAS
Sbjct: 449 -------------LCASGPPLTLSAVSRIRNGNNGWRGTVTGAAAAATGRQGYLSGAIAS 495

Query: 589 SFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSV 648
           SFH CKG+++ Y  G+S K K HLLVFSPSG MIQYALRIS G+D      GL + Y+S 
Sbjct: 496 SFHKCKGSNDMYVDGASFKSKYHLLVFSPSGSMIQYALRISAGVDSMAISSGLNATYESA 555

Query: 649 PEDDPRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEAN 708
            E+D RLVVEA+QKWNICQKQ RR+REDN DIYG+NG  DSNKI+PE +K GN    E +
Sbjct: 556 AENDGRLVVEAMQKWNICQKQNRRDREDNADIYGENGNSDSNKIHPEGIKKGNSIYPE-D 614

Query: 709 GVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEI 768
             +   K+S E+KH+LYISEAEL MH PR PLWAKP+IYFQSMM +  K+ + + L+GEI
Sbjct: 615 SAVTNAKISSEEKHYLYISEAELHMHQPRFPLWAKPEIYFQSMMTEGIKVDDADALQGEI 674

Query: 769 EIERFPTRMIEARSKDLVPVFDYLQSPK 796
           EIER PTRMIEARSKDLVP+FD+LQ+PK
Sbjct: 675 EIERIPTRMIEARSKDLVPLFDHLQAPK 702

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545163|ref|XP_003541014.1| PREDICTED: uncharacterized protein LOC100791837 [Glycine max]

 Score =  975 bits (2521), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/877 (60%), Positives = 619/877 (70%), Gaps = 21/877 (2%)

Query: 51  FRAISSYFRIVSSGASTVARSAVSVASS-IVERDDESSHDQVLWAGFDKLESEAGATRRV 109
           FR +S Y +IVSSGASTVARSA S  +S I+++ D +  D+V+WAGFD LE +    R++
Sbjct: 39  FRTLSGYLKIVSSGASTVARSAASSFASSILDKVDAADCDRVIWAGFDTLEGQGEVMRQI 98

Query: 110 LLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFC 169
           LLLGY SGFQVWDV +++NV DLVSR DGPVSFMQM+P PI SKR  DK+A   PLLV C
Sbjct: 99  LLLGYWSGFQVWDVNDSNNVRDLVSRQDGPVSFMQMVPTPIVSKRPEDKYAGKHPLLVIC 158

Query: 170 ADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIY 229
            DG    G K QDGL   C G + N+HD  NG+ +PT V FYS+RSQSYVH+LKFRS +Y
Sbjct: 159 MDG----GGKTQDGLGATCKGGTLNHHDQVNGNYLPTTVQFYSMRSQSYVHVLKFRSVVY 214

Query: 230 SVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWL 289
           SVRCSSR+VA+ QA Q+HCF A TLE EY +LTNPIV   P  G  GIG+GPLAVGPRWL
Sbjct: 215 SVRCSSRIVAVSQATQIHCFSATTLEREYTLLTNPIVT--PCFGSGGIGFGPLAVGPRWL 272

Query: 290 AYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 349
           AYSGSP   +  GRV PQHL  S SF G +SN S VAHYAKESSKHLAAGIV LGD+GYK
Sbjct: 273 AYSGSPDATATSGRVRPQHLTPSASFPGISSNVSLVAHYAKESSKHLAAGIVTLGDMGYK 332

Query: 350 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH 409
           KLS+YCSE  PDS +S+Q      K NG VNGH  DADN+GMVIVRDIVSKNV++QFRAH
Sbjct: 333 KLSRYCSELRPDSSSSIQLVNSSPKGNGIVNGHSTDADNIGMVIVRDIVSKNVVSQFRAH 392

Query: 410 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 469
           KSPISALCFDPSG +LVTASVQGHNIN+FKIIPG     SA DAG SYVHLYRLQRGLTN
Sbjct: 393 KSPISALCFDPSGTILVTASVQGHNINVFKIIPG-YERVSASDAGPSYVHLYRLQRGLTN 451

Query: 470 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGA---MAKSGV 526
           AVIQDISFS DS WIMISSSRGTSHLFAINP GG VN    D + T K+G    M    V
Sbjct: 452 AVIQDISFSADSRWIMISSSRGTSHLFAINPQGGPVNILSCDNSLTEKNGGLDVMNNQAV 511

Query: 527 RWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAI 586
            WP +  L++   QSLC +GPP+TLSVVSRIRNG+NGWR TV+GAAAAAT R+SSLSGAI
Sbjct: 512 CWPHSSALEICKPQSLCTAGPPITLSVVSRIRNGSNGWRSTVTGAAAAATNRMSSLSGAI 571

Query: 587 ASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYD 646
           ASSF N +GNS  +  G+  K K HLLVFSP+G MIQYAL+     D  + V G+  AY+
Sbjct: 572 ASSFRNFEGNSTLFVNGNYSKEKCHLLVFSPTGSMIQYALQTINSQDSGV-VSGVTPAYE 630

Query: 647 SVPEDDPRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTE 706
           S P  D R+VVE I+KWNI Q+Q+ RE EDNIDIYG+N   DSNK+Y EEVK  N  S +
Sbjct: 631 SAPATDVRVVVEPIKKWNISQRQSWREGEDNIDIYGENVVSDSNKLYSEEVKKDNIISPK 690

Query: 707 ANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKD-FKMGEENFLK 765
              V  K     E +H LYISEAELQMH  + PLW K  IYF S+  +    M EE    
Sbjct: 691 MKNVAVKWNSCSEKEHQLYISEAELQMHQAKTPLWGKTGIYFHSVGKEAILMMDEEAASG 750

Query: 766 GEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNSNERLLHQRSGLSENGL 825
           GE EI++ PTR+I+ARSKDLVP+FDY+Q+ KF Q R P VG    E+LL Q S   ENG 
Sbjct: 751 GEFEIDKIPTRVIQARSKDLVPIFDYIQTSKFQQIRTPAVGNVLYEQLLRQSS--FENGR 808

Query: 826 LSRRSSSGSLDSVTVNGALAAEPNIGIEETSLDCPQMPVDTKGFVNNSVSPKTKTRHEIV 885
           +S R    S D +       +E    IE +      +   TK FVN + + K  T  EI 
Sbjct: 809 ISTRGFLSSPDCIP-----NSEFKSMIEGSEWGDSLLSAKTKAFVNKNNTLKPNTWPEIA 863

Query: 886 NN-SESLRVEAQLKFVNSKIEGLRMENHFEDEGDEFD 921
           NN  E+L + A   FVNS  +GL++ENH +++GDEFD
Sbjct: 864 NNRRENLNMNAHQIFVNSDRKGLKLENHCKEKGDEFD 900

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514980|ref|XP_003526179.1| PREDICTED: uncharacterized protein LOC100778343 [Glycine max]

 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/878 (59%), Positives = 620/878 (70%), Gaps = 18/878 (2%)

Query: 51  FRAISSYFRIVSSGASTVARSAVSVASS-IVERDDESSHDQVLWAGFDKLESEAG-ATRR 108
           F  +S Y +IVSSGASTVARSA +  +S I+++DD++  D+V+WAGFD LE   G   R+
Sbjct: 35  FHTLSGYLKIVSSGASTVARSAAASFASSILDKDDDADRDRVIWAGFDTLEGGHGEVMRQ 94

Query: 109 VLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVF 168
           VLLLGY SGFQVWDV++++NV DLVSR DGPVSFMQM+P PI SK+  DKFA+ RPLLV 
Sbjct: 95  VLLLGYWSGFQVWDVDDSNNVRDLVSRQDGPVSFMQMVPTPIVSKKPEDKFADKRPLLVV 154

Query: 169 CADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPI 228
           C DG  + G K QDGL   CNG + N H   NG+ +PT V FYS+RS++ VH+LKFRS +
Sbjct: 155 CTDGLLAGGDKTQDGLGATCNGGTLNRHAQVNGNYLPTTVQFYSMRSRTNVHVLKFRSVV 214

Query: 229 YSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRW 288
           YSVRCSSR+V + QA Q+HC  A TLE EY +LTNPIV     +GGIG  +GPLAVGPRW
Sbjct: 215 YSVRCSSRIVTVSQATQIHCLSATTLEREYTLLTNPIVTHCLGSGGIG--FGPLAVGPRW 272

Query: 289 LAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGY 348
           LAYSGSP   +  G V+PQHL  S SF GF+SNGS VAHYAKESSKHLAAGIV LGD+GY
Sbjct: 273 LAYSGSPDATATSGHVSPQHLTPSASFPGFSSNGSLVAHYAKESSKHLAAGIVTLGDMGY 332

Query: 349 KKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA 408
           KKL++YCSE   DS  S+       K NG VNGH  DADN+GMVIVRDIVSKNVI+QFRA
Sbjct: 333 KKLARYCSELRSDSSGSIHLVNSSPKGNGIVNGHSTDADNIGMVIVRDIVSKNVISQFRA 392

Query: 409 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 468
           HKSPISALCFDPSG +L+TASVQGHNIN+FKIIPG     SA DA  SYVHLYRLQRGLT
Sbjct: 393 HKSPISALCFDPSGTILLTASVQGHNINVFKIIPG-YERVSASDADPSYVHLYRLQRGLT 451

Query: 469 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAM---AKSG 525
           NAVIQDISFS DS WIMISSSRGTSHLFAINP GG V+    D + T K+G +       
Sbjct: 452 NAVIQDISFSADSRWIMISSSRGTSHLFAINPQGGPVSILSCDNSLTEKNGGLDIINNQA 511

Query: 526 VRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGA 585
           VRWP +  L++   QSLCA+GPP+TLSVVSRIRNG+NGWR TV+GAAAAAT R+SSLSGA
Sbjct: 512 VRWPHSSALEICKPQSLCAAGPPITLSVVSRIRNGSNGWRSTVTGAAAAATNRMSSLSGA 571

Query: 586 IASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAY 645
           IASSF N K +S  Y  G+  K K+HLLVFSP+  MIQYAL+     D  + V G+  AY
Sbjct: 572 IASSFRNFKDSSTLYVNGNYSKEKHHLLVFSPTSSMIQYALQTINSQDSGV-VSGVTPAY 630

Query: 646 DSVPEDDPRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFAST 705
           +S P  D R+VVE I+KWNI    + RE ED IDIYG+NG  DSNK+Y EEVK  N  S 
Sbjct: 631 ESAPLTDARVVVEPIKKWNISLAYSWREGEDTIDIYGENGVSDSNKLYSEEVKKDNIISP 690

Query: 706 EANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIK-DFKMGEENFL 764
           +   V  K     E +H  YISEAELQMH  + PLW K  IYF S+  +    M EE  L
Sbjct: 691 KMKNVTVKWNPCSEKEHQFYISEAELQMHQAKTPLWGKTGIYFHSVGKEATLMMDEEAAL 750

Query: 765 KGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNSNERLLHQRSGLSENG 824
           +GE EIE+ PTR+I+ARSKDLVP+FDY+   +FS  R   V    NE+LLHQ S   E G
Sbjct: 751 EGEFEIEKIPTRVIQARSKDLVPIFDYI---RFS--RRTLVNNKLNEQLLHQSS--FEKG 803

Query: 825 LLSRRSSSGSLDSVTVNGALAAEPNIGIEETSLDCPQMPVDTKGFVNNSVSPKTKTRHEI 884
            +S R   G  D +  +G   AE   GIE        +P +TK FVNN+ + K  T  EI
Sbjct: 804 RISPRGILGFPDCINNSGETIAEFKSGIEGNERGDSLIPAETKAFVNNNNTLKPNTWPEI 863

Query: 885 VNN-SESLRVEAQLKFVNSKIEGLRMENHFEDEGDEFD 921
           VNN  E+L ++    FVNS  +GL++ENH +++GDEF+
Sbjct: 864 VNNRRENLNMDVHQMFVNSDRKGLKLENHCKEKGDEFE 901

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468504|ref|XP_004151961.1| PREDICTED: uncharacterized protein LOC101215158 [Cucumis sativus] gi|449527063|ref|XP_004170532.1| PREDICTED: uncharacterized LOC101215158 [Cucumis sativus]

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/932 (58%), Positives = 667/932 (71%), Gaps = 36/932 (3%)

Query: 1   MLEQQIGDIELNLVFWVFVNFIVRLFSGMRNSTDGPKPQNGVVSRSTK------SPFRAI 54
           M++  +G++ + LVFWV   F+  L  GMRN  DG   Q G V+RS +      + FRA 
Sbjct: 1   MIKVDVGELVI-LVFWVLAIFLT-LILGMRN--DGTLKQQGTVARSGRAHEFLSTSFRAF 56

Query: 55  SSYFRIVSSGASTVARSAVSVASSIVERDDESSHDQVLWAGFDKLESEAGATRRVLLLGY 114
           SSY +IVS+GASTVARSA SVASS+V++DDE++  QV WAGFDKLE +    R+VLLLG 
Sbjct: 57  SSYMKIVSAGASTVARSAASVASSLVDKDDEANASQVNWAGFDKLEWDDNVIRQVLLLGI 116

Query: 115 RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSR 174
           RSGFQVWDVEEA+NV +LV RYDG VS+MQ+LPR I S RS DKFAE RPL+V  A GS 
Sbjct: 117 RSGFQVWDVEEANNVQELVCRYDGSVSYMQVLPRLIPSMRSGDKFAESRPLIVLSAYGSI 176

Query: 175 SCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS 234
           +    +QD LA++ N T     ++ +G+ +PT V FYSL+SQ+YVH LKFRS +YSV+CS
Sbjct: 177 AANFNIQDRLASSGNATIPKSQEVVDGNFMPTFVRFYSLKSQTYVHELKFRSAVYSVKCS 236

Query: 235 SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGS 294
             VVAI  A Q+HC +A TLE E+ ILTNP+V       G G+GYGPLA+GPRWLAYSGS
Sbjct: 237 PLVVAISLATQIHCINATTLEKEHIILTNPVV-SGFPGSGGGMGYGPLALGPRWLAYSGS 295

Query: 295 PVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQY 354
           P+++SN GRV PQHL  S SFS  +SNGS VAHYAKESSKHLAAGIV LGD G KKLS+Y
Sbjct: 296 PILLSNTGRVVPQHLKPSASFSHSSSNGSLVAHYAKESSKHLAAGIVTLGDKGIKKLSRY 355

Query: 355 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS 414
            SE LP+S NSLQS   G K  GT+NGH  DAD++GM IV+DI+SK VI QF+AHKSPIS
Sbjct: 356 YSELLPESNNSLQSGAQGLKGIGTLNGHMADADSIGMAIVKDIISKAVITQFKAHKSPIS 415

Query: 415 ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQD 474
           ALCFDPSG +LVTASVQGH+IN+FKI+P     SS      SY HLYRLQRG TNAVIQD
Sbjct: 416 ALCFDPSGTILVTASVQGHSINVFKIMPSSCSKSSISSTAASYSHLYRLQRGFTNAVIQD 475

Query: 475 ISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGA---MAKSGVRWPPN 531
           ISFS DSNWIMISSSRGTSHLFAINP GG VNF    A+   ++G     A+  VR   +
Sbjct: 476 ISFSYDSNWIMISSSRGTSHLFAINPSGGQVNF--PSADIIARNGGPVVPARQTVR-RVD 532

Query: 532 LGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFH 591
            GL MP++Q+ C +G P+TLS V+RI +G+NGWRGTVS AAAAATG++  +SGAIAS+FH
Sbjct: 533 SGLHMPSKQNQCTTGSPLTLSAVTRIHHGSNGWRGTVSSAAAAATGKMGIVSGAIASAFH 592

Query: 592 NCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPED 651
            CKGN+     GSS +++ H+LVFSPSG MIQYALR+  GLD T+ +P   +A + V E 
Sbjct: 593 ECKGNTVHVDNGSS-EVRYHILVFSPSGSMIQYALRV--GLDSTVVLPRSSTALELVSEL 649

Query: 652 DPRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEANGVI 711
           D RLVVEAIQKWNI QKQ RR ++++IDIYGDNG  + NK Y EE+ +GN    EA G I
Sbjct: 650 DSRLVVEAIQKWNISQKQNRRSQDNSIDIYGDNGGFNCNKNYCEEM-NGN-PVLEAGGNI 707

Query: 712 EKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIE 771
            KTK   E+++HLYISEAELQMH  R PLW KP+IYFQ M     K+ E +   GE++IE
Sbjct: 708 FKTKACREEQYHLYISEAELQMHAARTPLWTKPEIYFQVMARDGVKIDEIDH-PGELDIE 766

Query: 772 RFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNSNERLLHQRSGLSENGLLSRRSS 831
           R PTRMIEARSKDLVPVFDYLQS K SQ R   +  NS++ LL Q+SG  ENG  S RS+
Sbjct: 767 RIPTRMIEARSKDLVPVFDYLQSSKISQPRY--LNSNSDQLLLQQKSGQFENGRQSWRSA 824

Query: 832 SGSLDSVTVNGALAAEPNIGIEETSLDCPQMPVDTKGFVNNSVSPKTKTRHEIVNN-SES 890
           +   DSV  NG          E T     +   +TKG VN    P+++T+   VN+ +ES
Sbjct: 825 ANPHDSVVGNGR---------EVTGRHGYKRVTETKGIVNEPECPRSQTQFSNVNSCTES 875

Query: 891 LRVEAQLKFVNSKIE-GLRMENHFEDEGDEFD 921
           + +E+Q K VN+  + GLR+ENHFED GDEF+
Sbjct: 876 ISMESQPKSVNNHHKSGLRVENHFEDLGDEFE 907

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	921
TAIR|locus:2020853	959	ATG18G "AT1G03380" [Arabidopsi	0.749	0.719	0.403	6.3e-124
TAIR|locus:2157523	763	G18F "AT5G54730" [Arabidopsis	0.290	0.351	0.508	4e-110
TAIR|locus:2199512	927	ATG18H "AT1G54710" [Arabidopsi	0.621	0.617	0.413	1e-109
ZFIN|ZDB-GENE-040426-1257	910	bcas3 "breast carcinoma amplif	0.228	0.230	0.334	4.5e-39
UNIPROTKB|F1P1V9	803	BCAS3 "Uncharacterized protein	0.221	0.254	0.341	1.9e-37
RGD|1560788	803	Bcas3 "breast carcinoma amplif	0.221	0.254	0.337	6.5e-36
UNIPROTKB|F1LSC9	824	Bcas3 "Protein Bcas3" [Rattus	0.221	0.247	0.337	7.8e-36
UNIPROTKB|F1S209	820	BCAS3 "Uncharacterized protein	0.221	0.248	0.329	1e-35
UNIPROTKB|Q9H6U6	928	BCAS3 "Breast carcinoma-amplif	0.221	0.219	0.337	1.3e-35
MGI|MGI:2385848	928	Bcas3 "breast carcinoma amplif	0.221	0.219	0.333	1.4e-35

TAIR|locus:2020853 ATG18G "AT1G03380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
 Identities = 296/734 (40%), Positives = 419/734 (57%)

Query:    85 ESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQ 144
             E   DQV WAGF  LE     TR VLLLGY++GFQV+DVE+A N ++LVS+  GPVSF+Q
Sbjct:    53 EDDKDQVTWAGFGILELGQHVTRHVLLLGYQNGFQVFDVEDASNFNELVSKRGGPVSFLQ 112

Query:   145 MLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKV-----QDGLATACNGTSANYHDLG 199
             M P P  S    + F    PLL+  A G  + GT +     Q+G + A +G+S +    G
Sbjct:   113 MQPLPARSG-DHEGFWNSHPLLLVVA-GDETNGTGLGHSFSQNG-SLARDGSSDS--KAG 167

Query:   200 NGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYA 259
             +  + PT V FYSLRS SYV++L+FRS +  +RCSSRVVA+  A Q++C DA TLE +++
Sbjct:   168 DAINYPTTVRFYSLRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKFS 227

Query:   260 ILTNPIVMG-HPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF 318
             +LT P+          + +GYGP+AVGPRWLAY+    +    GR++PQ    S S S  
Sbjct:   228 VLTYPVPQPVRQGTTRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPS 287

Query:   319 ASNG--SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSN 376
             +S+G  S +A YA ESSK LA G++NLGD+GYK LS+YC + LPD   S  S     K  
Sbjct:   288 SSSGGSSFMARYAMESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWKVG 347

Query:   377 GTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 436
             G V+G   DA+N GMV V+D+VS  +++QF+AH SPISALCFDPSG LLVTASV G+NIN
Sbjct:   348 G-VSGS--DAENAGMVAVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNIN 404

Query:   437 IFKIIPGILGTSS---ACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 493
             +F+I+P     +    + +  +S+VHL++L RG+T+A++QDI FS  S W+ I SS+GT 
Sbjct:   405 VFQIMPSRSHNAPGDLSYEWESSHVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTC 464

Query:   494 HLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPP--VTL 551
             H+F +N  G    FQP +    T+   +  S + W     L   NQQSL    PP  V L
Sbjct:   465 HIFVLNSSGSDAAFQPCEGEEPTR---LPASSLPWWFTQSLSS-NQQSL---SPPTAVAL 517

Query:   552 SVVSRIRNGNNGWXXXXXXXXXXXXXXXXXLSGAIASSFHNCKGNSETYAAGSSLKIKNH 611
             SVVSRI+  + GW                  SGA+A+ FH  K  +      S      H
Sbjct:   518 SVVSRIKYSSFGWLNTVSNATTAATGKVFVPSGAVAAVFH--KSVTHDLQLNSRTNALEH 575

Query:   612 LLVFSPSGCMIQYALRISTGLDVTM-GVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQA 670
             +LV++PSG ++Q+ L  S   +    G+    +++  V EDD R+ VE IQ W++C++  
Sbjct:   576 ILVYTPSGHVVQHELLPSVCTESPENGLRVQKTSHVQVQEDDLRVKVEPIQWWDVCRRSD 635

Query:   671 RREREDNI--DIYGDNGTLD--SNKIYPEEVK----DGNFASTEANGVIEKTKVSPEDKH 722
               E E+ +   I      L+  SN +   E      D N   +E +  ++     P ++ 
Sbjct:   636 WLETEERLPKSITEKQYDLETVSNHLTSHEDACLSLDMNSHFSE-DKYLKSCSEKPPERS 694

Query:   723 HLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEIEIERFPTRMIEARS 782
             H Y+S  E+++    +P+W   +I F  M   D    + +   GE EIE+ P   +E + 
Sbjct:   695 HCYLSNFEVKVTSGMLPVWQNSKISFHVM---DSPR-DSSSTGGEFEIEKVPAHELEIKQ 750

Query:   783 KDLVPVFDYLQSPK 796
             K L+PVFD+  S K
Sbjct:   751 KKLLPVFDHFHSTK 764

GO:0003674 "molecular_function" evidence=ND

GO:0042594 "response to starvation" evidence=IEP

TAIR|locus:2157523 G18F "AT5G54730" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 4.0e-110, Sum P(3) = 4.0e-110
 Identities = 146/287 (50%), Positives = 193/287 (67%)

Query:   218 YVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLE-IEYAILTNP--IVMGHPSAG 273
             YV+ LK +S +++++  + + ++ C +  V    AA ++  + A L     IV      G
Sbjct:   164 YVYSLKSQSYVHTLKFRATIYSVRCCSRIVAVLQAAQIDCFDAATLEMDYRIVTNSIVCG 223

Query:   274 GIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 333
              +G+GYGPLAVGPRW+AYSGS +  S+        +  S   S   S+ S VA +A++SS
Sbjct:   224 SLGVGYGPLAVGPRWIAYSGSRIATSSSA------IFTSEIVSLSTSSPS-VAQFARDSS 276

Query:   334 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVI 393
             K LA+GI NLGD GY+ L++YCSE LP+        IPG K  G  N    DA+++GMVI
Sbjct:   277 KQLASGIANLGDKGYRSLTKYCSEVLPNPY------IPGLKGIGVGNEKVADAESIGMVI 330

Query:   394 VRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA 453
             V+DI +K+VI QF+AHKSPISALCFD SG+LLVTAS+QGHNIN+F+I+P I  TS A   
Sbjct:   331 VKDITNKSVITQFKAHKSPISALCFDQSGLLLVTASIQGHNINVFRIMPTI-STSRAVKT 389

Query:   454 GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 500
              T++ HL+RLQRG TNAVIQDI FS DSN I++ SSRGTSHLF INP
Sbjct:   390 -TTFAHLFRLQRGFTNAVIQDICFSKDSNLIVVGSSRGTSHLFEINP 435

GO:0003674 "molecular_function" evidence=ND

GO:0042594 "response to starvation" evidence=IEP

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2199512 ATG18H "AT1G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 250/604 (41%), Positives = 359/604 (59%)

Query:    83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSF 142
             D     DQVLW+ FD+L +   + + VLLLGY +GFQV D++++++V + VSR D PV+F
Sbjct:    60 DSHELKDQVLWSSFDRLHTSESSFKNVLLLGYTNGFQVLDIDDSNDVTEFVSRRDDPVTF 119

Query:   143 MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGS 202
             +QM P P       + F    P+L+  AD ++  G      + T+ +G+  N ++     
Sbjct:   120 LQMQPLPAKCD-GVEGFRSSHPILLAVADEAKGSGP-----IVTSRDGSVRNGYEDPLAL 173

Query:   203 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 262
             S PTVV FYSLRS +YVH+L+FRS +Y VRCS R+VA+   +Q++CFDA TLE ++++L+
Sbjct:   174 S-PTVVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLGSQIYCFDALTLENKFSVLS 232

Query:   263 NPIV-MGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSR-SFSGFAS 320
              P+  +G+    G+ +GYGP+AVG RWLAY+ +  + S+ GR++PQ++     S S   +
Sbjct:   233 YPVPQLGNQGISGVNVGYGPMAVGARWLAYASNSPLSSSIGRLSPQNVTPPGVSPSTSPN 292

Query:   321 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVN 380
             NG+ VA YA ESSKHLAAG++NLGD GYK +S+YC +   D      S+ PG K  G V 
Sbjct:   293 NGNLVARYAMESSKHLAAGLLNLGDKGYKTISKYCQDLKHDGPGPSLSSSPGRKV-GRVG 351

Query:   381 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 440
              H  ++D VG VIV+D  S+ +IAQFRAH SPISALCFDPSG LLVTAS+ G+NIN+F+I
Sbjct:   352 SHSAESDVVGTVIVKDFESRAIIAQFRAHTSPISALCFDPSGTLLVTASIHGNNINVFRI 411

Query:   441 IPGILGT---SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 497
             +P        + + D  +S+V LY+L RG+T+AVIQDI FS  S WI I SS+ T H++ 
Sbjct:   412 MPTPTKNGPGAQSYDWSSSHVPLYKLHRGMTSAVIQDICFSSYSQWIAIVSSKSTCHIYV 471

Query:   498 INPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPP---VTLSVV 554
             ++P GG    +  ++ F     A   S   W        P+  +   S PP   VTLSVV
Sbjct:   472 LSPFGGENVLEIRNSQFDGPTLAPTLSLPWW------SSPSFMTTHFSYPPPASVTLSVV 525

Query:   555 SRIRNGNNGWXXXXXXXXXXXXXXXXXLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLV 614
             SRI+  N                     SG +A+ FH     S    + SS    ++LLV
Sbjct:   526 SRIKCNN------FFHAASSVVGKPTFPSGCLAAVFHQ----SVPQESQSSSPALDYLLV 575

Query:   615 FSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDPRLVVEAIQKWNICQKQARRER 674
             ++PSG ++QY L  S G D        G+      E++ R+ VE +Q W++C++    ER
Sbjct:   576 YTPSGHVVQYKLIPSLGGDQAESNTRNGATSGLTSEEELRVKVEPVQCWDVCRRADWPER 635

Query:   675 EDNI 678
             E+NI
Sbjct:   636 EENI 639

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0042594 "response to starvation" evidence=IEP

GO:0007033 "vacuole organization" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

ZFIN|ZDB-GENE-040426-1257 bcas3 "breast carcinoma amplified sequence 3" [Danio rerio (taxid:7955)]

 Score = 294 (108.6 bits), Expect = 4.5e-39, Sum P(4) = 4.5e-39
 Identities = 78/233 (33%), Positives = 118/233 (50%)

Query:   276 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 335
             G  + P+A+G RWLAY+ + ++     R +     QSR       N          ++K 
Sbjct:   223 GPNFNPIALGSRWLAYAENKLI-----RCH-----QSRG-GACGDNAQSYTATVISAAKT 271

Query:   336 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSN-GTVNGHFPDADNVG---M 391
             L  G+  +G +   +L+      +PD + +  S         G V     D   VG   +
Sbjct:   272 LKTGLTMVGKV-VTQLAGTLPSGVPDEEGTAHSGTRRSPHQPGVVT--IIDTHTVGEGQV 328

Query:   392 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC 451
             ++  D   + +IA F AH  PIS + F+PSG+LLVTA   GH+ ++F+I+     T    
Sbjct:   329 LVSEDSDGEGLIAHFPAHDKPISCMAFNPSGMLLVTADTLGHDFHVFQIL-----THPWA 383

Query:   452 DAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 504
              + ++  HLY L RG T A +QDI FS D  W++IS+ RGTSH+F INP GG+
Sbjct:   384 SSQSAVHHLYTLHRGETEAKVQDICFSHDCRWVVISTLRGTSHVFPINPYGGA 436

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1P1V9 BCAS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 1.9e-37, Sum P(5) = 1.9e-37
 Identities = 81/237 (34%), Positives = 121/237 (51%)

Query:   276 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 332
             G    P+A+G RWLAY+ + ++     R +     QSR   G A  G  +  Y      +
Sbjct:   227 GPNMNPIALGSRWLAYAENKLI-----RCH-----QSR---GGAC-GDNIQSYTATVISA 272

Query:   333 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQS-AIPGGKSNGTVNGHFP--DADNV 389
             +K +  G+  +G    K ++Q     LP      +  A    + +  V G     D + V
Sbjct:   273 AKTIKTGLTMVG----KVVTQLTGT-LPSGATEEEILAHSNVRRSPLVPGVITIIDTETV 327

Query:   390 --GMVIV-RDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 446
               G V+V  D  S  ++A F AH+ PI  + F+PSG+LLVT    GH+ ++F+I+     
Sbjct:   328 AEGQVLVSEDSDSAGIVAHFPAHEKPICCMAFNPSGMLLVTTDTLGHDFHVFQIL----- 382

Query:   447 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 503
             T     + ++  HLY L RG T A +QDISFS D  W+++S+ RGTSH+F INP GG
Sbjct:   383 THPWSSSQSAVHHLYTLHRGETEAKVQDISFSHDCRWVVVSTLRGTSHVFPINPYGG 439

GO:0005737 "cytoplasm" evidence=IEA

GO:0071944 "cell periphery" evidence=IEA

RGD|1560788 Bcas3 "breast carcinoma amplified sequence 3" [Rattus norvegicus (taxid:10116)]

 Score = 268 (99.4 bits), Expect = 6.5e-36, Sum P(4) = 6.5e-36
 Identities = 80/237 (33%), Positives = 121/237 (51%)

Query:   276 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 332
             G    P+A+G RWLAY+ + ++     R +     QSR   G A  G  +  Y      +
Sbjct:   227 GPNMNPIALGSRWLAYAENKLI-----RCH-----QSR---GGAC-GDNIQSYTATVISA 272

Query:   333 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIP-GGKSNGTVNGHFP--DADNV 389
             +K L +G+  +G    K ++Q     LP        AI    + +  V G     D + V
Sbjct:   273 AKTLKSGLTMVG----KVVTQLTGT-LPSGVTDDDIAIHCNSRRSPLVPGIITVIDTETV 327

Query:   390 G---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 446
             G   +++  D  S  ++A F AH+ P+  + F+ SG+LLVT    GH+ ++F+I+     
Sbjct:   328 GEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPW- 386

Query:   447 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 503
             +SS C    +  HLY L RG T A +QDI FS D  W+++S+ RGTSH+F INP GG
Sbjct:   387 SSSQC----AVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGG 439

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0071944 "cell periphery" evidence=ISO

UNIPROTKB|F1LSC9 Bcas3 "Protein Bcas3" [Rattus norvegicus (taxid:10116)]

 Score = 268 (99.4 bits), Expect = 7.8e-36, Sum P(4) = 7.8e-36
 Identities = 80/237 (33%), Positives = 121/237 (51%)

Query:   276 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 332
             G    P+A+G RWLAY+ + ++     R +     QSR   G A  G  +  Y      +
Sbjct:   227 GPNMNPIALGSRWLAYAENKLI-----RCH-----QSR---GGAC-GDNIQSYTATVISA 272

Query:   333 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIP-GGKSNGTVNGHFP--DADNV 389
             +K L +G+  +G    K ++Q     LP        AI    + +  V G     D + V
Sbjct:   273 AKTLKSGLTMVG----KVVTQLTGT-LPSGVTDDDIAIHCNSRRSPLVPGIITVIDTETV 327

Query:   390 G---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 446
             G   +++  D  S  ++A F AH+ P+  + F+ SG+LLVT    GH+ ++F+I+     
Sbjct:   328 GEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPW- 386

Query:   447 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 503
             +SS C    +  HLY L RG T A +QDI FS D  W+++S+ RGTSH+F INP GG
Sbjct:   387 SSSQC----AVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGG 439

GO:0005737 "cytoplasm" evidence=IEA

GO:0071944 "cell periphery" evidence=IEA

UNIPROTKB|F1S209 BCAS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 265 (98.3 bits), Expect = 1.0e-35, Sum P(4) = 1.0e-35
 Identities = 78/237 (32%), Positives = 119/237 (50%)

Query:   276 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 332
             G    P+A+G RWLAY+ + ++     R +     QSR   G A  G  +  Y      +
Sbjct:   223 GPNMNPIALGSRWLAYAENKLI-----RCH-----QSR---GGAC-GDNIQSYTATVISA 268

Query:   333 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAI-PGGKSNGTVNGHFP--DADNV 389
             +K L  G+  +G    K ++Q     LP        AI    + +  V G     D + V
Sbjct:   269 AKTLKTGLTMVG----KVVTQLTGT-LPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETV 323

Query:   390 G---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 446
             G   +++  D  S  ++A F AH+ P+  + F+ SG+LLVT    GH+ ++F+I+     
Sbjct:   324 GEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL----- 378

Query:   447 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 503
             T     + ++  HLY L RG T A +QDI FS D  W+++S+ RGTSH+F INP GG
Sbjct:   379 THPWSSSQSAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGG 435

GO:0071944 "cell periphery" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9H6U6 BCAS3 "Breast carcinoma-amplified sequence 3" [Homo sapiens (taxid:9606)]

 Score = 269 (99.8 bits), Expect = 1.3e-35, Sum P(4) = 1.3e-35
 Identities = 80/237 (33%), Positives = 121/237 (51%)

Query:   276 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 332
             G    P+A+G RWLAY+ + ++     R +     QSR   G A  G  +  Y      +
Sbjct:   227 GPNMNPIALGSRWLAYAENKLI-----RCH-----QSR---GGAC-GDNIQSYTATVISA 272

Query:   333 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAI-PGGKSNGTVNGHFP--DADNV 389
             +K L +G+  +G    K ++Q     LP        AI    + +  V G     D + V
Sbjct:   273 AKTLKSGLTMVG----KVVTQLTGT-LPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETV 327

Query:   390 G---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 446
             G   +++  D  S  ++A F AH+ P+  + F+ SG+LLVT    GH+ ++F+I+     
Sbjct:   328 GEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPW- 386

Query:   447 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 503
             +SS C    +  HLY L RG T A +QDI FS D  W+++S+ RGTSH+F INP GG
Sbjct:   387 SSSQC----AVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGG 439

GO:0005737 "cytoplasm" evidence=IEA

GO:0071944 "cell periphery" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:2385848 Bcas3 "breast carcinoma amplified sequence 3" [Mus musculus (taxid:10090)]

 Score = 266 (98.7 bits), Expect = 1.4e-35, Sum P(4) = 1.4e-35
 Identities = 79/237 (33%), Positives = 121/237 (51%)

Query:   276 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK---ES 332
             G    P+A+G RWLAY+ + ++     R +     QSR   G A  G  +  Y      +
Sbjct:   227 GPNMNPIALGSRWLAYAENKLI-----RCH-----QSR---GGAC-GDNIQSYTATVLSA 272

Query:   333 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIP-GGKSNGTVNGHFP--DADNV 389
             +K L +G+  +G    K ++Q     LP        A+    + +  V G     D + V
Sbjct:   273 AKTLKSGLTMVG----KVVTQLTGT-LPSGVTEDDVALHCNSRRSPLVPGIITVIDTETV 327

Query:   390 G---MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 446
             G   +++  D  S  ++A F AH+ P+  + F+ SG+LLVT    GH+ ++F+I+     
Sbjct:   328 GEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPW- 386

Query:   447 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 503
             +SS C    +  HLY L RG T A +QDI FS D  W+++S+ RGTSH+F INP GG
Sbjct:   387 SSSQC----AVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGG 439

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	921
pfam12490	245	pfam12490, BCAS3, Breast carcinoma amplified seque	6e-88
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.002

>gnl|CDD|221602 pfam12490, BCAS3, Breast carcinoma amplified sequence 3

 Score =  280 bits (717), Expect = 6e-88
 Identities = 114/246 (46%), Positives = 152/246 (61%), Gaps = 5/246 (2%)

Query: 546 GPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSS 605
            PPVTLSVVSRI+NGN+GW GTV+GAA++ATG+   +SGA+AS FHNC G +   A G  
Sbjct: 1   PPPVTLSVVSRIKNGNSGWLGTVTGAASSATGKPLVVSGAVASVFHNCSGKNSESADGIK 60

Query: 606 LKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPEDDP-RLVVEAIQKWN 664
              K+HLLVFSPSG +IQY LR S G D    +P  G   +S  ++   RL VE +Q+W+
Sbjct: 61  SNSKDHLLVFSPSGHLIQYLLRPSVGGDS-GEIPRNGVPSESQIDETELRLTVEPVQQWD 119

Query: 665 ICQKQARREREDNIDIYGDNGTLDS-NKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHH 723
           +C++    ERE+N+   G+N  LD+  K+ PE  + GN     ++  + K   S E+K H
Sbjct: 120 VCRRSNWPEREENVAPLGENNPLDADAKVEPEVGRKGNSVHPISDSAVGKESTSSEEKDH 179

Query: 724 LYISEAELQMH-PPRIPLWAKPQIYFQSM-MIKDFKMGEENFLKGEIEIERFPTRMIEAR 781
           LY+S AE+Q H  P  PLW  P+  F  M      ++     L GEIEIE+ PTR +E R
Sbjct: 180 LYLSNAEVQTHSGPHRPLWQGPKFSFYVMQSPTGKELENSGSLSGEIEIEKLPTREVEIR 239

Query: 782 SKDLVP 787
            KDLVP
Sbjct: 240 RKDLVP 245

This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer. Length = 245

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 31/135 (22%)

Query: 390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKII---- 441
             + + D+ +   +     H S +S++ F P G +L ++S        ++   K +    
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132

Query: 442 -------------PGILGTSSACDAGTSYVHLYRLQRGLTNAV-------IQDISFSDDS 481
                         G    SS+ D     + L+ L+ G   A        +  ++FS D 
Sbjct: 133 GHTDWVNSVAFSPDGTFVASSSQD---GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG 189

Query: 482 NWIMISSSRGTSHLF 496
             ++ SSS GT  L+
Sbjct: 190 EKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 399 SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH 433
           S  ++   + H  P++++ F P G  L + S  G 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGT 35

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	921
PF12490	251	BCAS3: Breast carcinoma amplified sequence 3 ; Int	100.0
KOG2109	788	consensus WD40 repeat protein [General function pr	100.0
KOG2110	391	consensus Uncharacterized conserved protein, conta	100.0
KOG2111	346	consensus Uncharacterized conserved protein, conta	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.92
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.88
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.88
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.87
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.87
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.87
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.84
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.83
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.82
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.81
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.8
PLN00181	793	protein SPA1-RELATED; Provisional	99.79
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.79
KOG0286	343	consensus G-protein beta subunit [General function	99.78
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.78
KOG0266	456	consensus WD40 repeat-containing protein [General	99.77
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.77
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.77
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.76
PLN00181	793	protein SPA1-RELATED; Provisional	99.76
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.76
KOG0266	456	consensus WD40 repeat-containing protein [General	99.75
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.73
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.72
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.72
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.72
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.72
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.72
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.71
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.71
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.71
KOG0643	327	consensus Translation initiation factor 3, subunit	99.7
KOG0286	343	consensus G-protein beta subunit [General function	99.7
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.69
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.69
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.69
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.69
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.68
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.67
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.67
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.67
PTZ00421	493	coronin; Provisional	99.67
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.67
KOG0296	399	consensus Angio-associated migratory cell protein	99.66
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.65
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.65
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.65
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.65
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.64
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.64
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.64
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.61
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.61
KOG2055	514	consensus WD40 repeat protein [General function pr	99.6
PTZ00420	568	coronin; Provisional	99.6
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.59
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.59
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.58
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.57
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.57
PTZ00420	568	coronin; Provisional	99.56
KOG1539	910	consensus WD repeat protein [General function pred	99.56
KOG1539	910	consensus WD repeat protein [General function pred	99.56
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.56
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.55
KOG0641	350	consensus WD40 repeat protein [General function pr	99.55
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.55
PTZ00421	493	coronin; Provisional	99.55
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.54
KOG2096	420	consensus WD40 repeat protein [General function pr	99.54
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.53
KOG0645	312	consensus WD40 repeat protein [General function pr	99.53
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.53
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.52
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.52
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.52
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.51
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.48
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.48
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.47
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.47
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.46
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.46
KOG0645	312	consensus WD40 repeat protein [General function pr	99.46
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.46
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.44
KOG1274	933	consensus WD40 repeat protein [General function pr	99.44
KOG0643	327	consensus Translation initiation factor 3, subunit	99.43
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.43
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.42
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.41
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.41
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.41
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.4
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.4
KOG0289	506	consensus mRNA splicing factor [General function p	99.4
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.39
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.39
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.37
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.37
KOG0296	399	consensus Angio-associated migratory cell protein	99.36
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.35
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.34
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.33
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.33
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.3
KOG1273	405	consensus WD40 repeat protein [General function pr	99.3
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.29
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.29
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.28
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.26
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.25
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.25
KOG0639	705	consensus Transducin-like enhancer of split protei	99.25
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.25
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.24
KOG0639	705	consensus Transducin-like enhancer of split protei	99.24
KOG2109	788	consensus WD40 repeat protein [General function pr	99.24
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.23
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.23
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.22
KOG0267	825	consensus Microtubule severing protein katanin p80	99.22
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.22
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.21
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.21
KOG4328	498	consensus WD40 protein [Function unknown]	99.21
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.21
KOG0289	506	consensus mRNA splicing factor [General function p	99.2
KOG2096	420	consensus WD40 repeat protein [General function pr	99.19
KOG1274	933	consensus WD40 repeat protein [General function pr	99.19
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.19
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.19
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.18
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.17
KOG2048	691	consensus WD40 repeat protein [General function pr	99.16
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.16
PRK11028	330	6-phosphogluconolactonase; Provisional	99.14
KOG0646	476	consensus WD40 repeat protein [General function pr	99.12
KOG0267	825	consensus Microtubule severing protein katanin p80	99.12
COG2319	466	FOG: WD40 repeat [General function prediction only	99.11
KOG0641	350	consensus WD40 repeat protein [General function pr	99.11
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.1
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.09
KOG2048	691	consensus WD40 repeat protein [General function pr	99.08
PRK11028	330	6-phosphogluconolactonase; Provisional	99.07
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.05
PRK01742	429	tolB translocation protein TolB; Provisional	99.04
KOG2055	514	consensus WD40 repeat protein [General function pr	99.04
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.03
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.02
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.01
KOG4328	498	consensus WD40 protein [Function unknown]	98.99
KOG0646	476	consensus WD40 repeat protein [General function pr	98.98
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.98
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.98
KOG1188	376	consensus WD40 repeat protein [General function pr	98.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	98.97
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.92
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.91
PRK03629	429	tolB translocation protein TolB; Provisional	98.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.86
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.81
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.8
COG2319	466	FOG: WD40 repeat [General function prediction only	98.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.79
KOG0640	430	consensus mRNA cleavage stimulating factor complex	98.78
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.77
KOG1963	792	consensus WD40 repeat protein [General function pr	98.77
KOG1273	405	consensus WD40 repeat protein [General function pr	98.75
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.74
PRK05137	435	tolB translocation protein TolB; Provisional	98.74
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.73
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.72
PRK04922	433	tolB translocation protein TolB; Provisional	98.71
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.7
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.68
KOG0270	463	consensus WD40 repeat-containing protein [Function	98.67
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.67
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.66
PRK02889	427	tolB translocation protein TolB; Provisional	98.65
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.65
KOG1963	792	consensus WD40 repeat protein [General function pr	98.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.59
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.59
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.57
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.57
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.55
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.54
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.54
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.54
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.54
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.51
PRK01742	429	tolB translocation protein TolB; Provisional	98.49
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.45
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.42
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.41
PRK04922	433	tolB translocation protein TolB; Provisional	98.39
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.38
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.36
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.35
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.34
PRK00178	430	tolB translocation protein TolB; Provisional	98.34
PRK03629	429	tolB translocation protein TolB; Provisional	98.33
PRK05137	435	tolB translocation protein TolB; Provisional	98.33
PRK02889	427	tolB translocation protein TolB; Provisional	98.3
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.29
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.26
KOG0649	325	consensus WD40 repeat protein [General function pr	98.26
KOG1188	376	consensus WD40 repeat protein [General function pr	98.25
PRK04792	448	tolB translocation protein TolB; Provisional	98.22
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.22
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.22
KOG1310	758	consensus WD40 repeat protein [General function pr	98.22
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.19
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.17
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.16
PRK01029	428	tolB translocation protein TolB; Provisional	98.11
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.1
KOG2139	445	consensus WD40 repeat protein [General function pr	98.07
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.06
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.02
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.95
PRK00178	430	tolB translocation protein TolB; Provisional	97.86
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	97.85
PRK04792	448	tolB translocation protein TolB; Provisional	97.85
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.84
PRK04043	419	tolB translocation protein TolB; Provisional	97.8
KOG4547	541	consensus WD40 repeat-containing protein [General	97.78
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.77
KOG2139	445	consensus WD40 repeat protein [General function pr	97.77
KOG4415	247	consensus Uncharacterized conserved protein [Funct	97.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.71
KOG2321	703	consensus WD40 repeat protein [General function pr	97.71
KOG2321	703	consensus WD40 repeat protein [General function pr	97.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.67
PRK01029	428	tolB translocation protein TolB; Provisional	97.65
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.6
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.6
COG4946	668	Uncharacterized protein related to the periplasmic	97.57
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.56
KOG4547	541	consensus WD40 repeat-containing protein [General	97.55
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.55
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.55
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.53
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.51
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.49
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.45
KOG1334	559	consensus WD40 repeat protein [General function pr	97.45
KOG4227	609	consensus WD40 repeat protein [General function pr	97.43
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	97.42
KOG0649	325	consensus WD40 repeat protein [General function pr	97.39
KOG1310	758	consensus WD40 repeat protein [General function pr	97.37
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	97.32
COG4946	668	Uncharacterized protein related to the periplasmic	97.31
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	97.26
KOG2315	566	consensus Predicted translation initiation factor	97.23
KOG4227	609	consensus WD40 repeat protein [General function pr	97.19
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.18
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.18
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.16
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.13
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.13
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.12
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	97.1
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.08
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.07
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.03
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.97
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.92
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.88
KOG2315	566	consensus Predicted translation initiation factor	96.87
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.79
PRK04043	419	tolB translocation protein TolB; Provisional	96.56
KOG0280	339	consensus Uncharacterized conserved protein [Amino	96.54
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.33
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.18
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.1
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.06
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	95.97
KOG4532	344	consensus WD40-like repeat containing protein [Gen	95.87
KOG2314	698	consensus Translation initiation factor 3, subunit	95.57
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.52
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.34
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.33
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	95.29
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.22
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	95.2
KOG4532	344	consensus WD40-like repeat containing protein [Gen	95.15
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.1
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	95.04
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.95
KOG1912	1062	consensus WD40 repeat protein [General function pr	94.92
KOG2314	698	consensus Translation initiation factor 3, subunit	94.76
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	94.64
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	94.63
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.44
KOG2695	425	consensus WD40 repeat protein [General function pr	94.37
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.31
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	94.02
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	93.77
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	93.65
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	93.58
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	93.24
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.15
KOG2695	425	consensus WD40 repeat protein [General function pr	93.11
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	93.1
KOG3621	726	consensus WD40 repeat-containing protein [General	92.85
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	92.79
KOG2041	1189	consensus WD40 repeat protein [General function pr	92.63
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	92.34
KOG0280	339	consensus Uncharacterized conserved protein [Amino	91.9
PRK02888	635	nitrous-oxide reductase; Validated	91.79
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	91.67
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	91.49
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	91.42
KOG4714	319	consensus Nucleoporin [Nuclear structure]	91.07
KOG1334	559	consensus WD40 repeat protein [General function pr	90.96
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	90.94
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	90.8
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	90.17
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	90.05
KOG4714	319	consensus Nucleoporin [Nuclear structure]	89.3
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	89.05
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	88.86
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	88.74
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	88.06
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.02
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	87.82
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	87.39
KOG2041	1189	consensus WD40 repeat protein [General function pr	86.98
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	86.69
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	86.66
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	86.42
PRK13616	591	lipoprotein LpqB; Provisional	86.25
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	86.11
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	85.78
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	85.39
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	84.93
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	84.68
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	84.57
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	83.59
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	83.41
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	82.99
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	82.9
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	82.89
COG3391	381	Uncharacterized conserved protein [Function unknow	82.77
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	82.17
KOG1409	404	consensus Uncharacterized conserved protein, conta	82.09
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	82.0
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	81.19
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	81.01
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	80.28

>PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length

Probab=100.00  E-value=1.5e-60  Score=509.54  Aligned_cols=241  Identities=47%  Similarity=0.725  Sum_probs=213.5

Q ss_pred             CCceeeeeeeEEecCC-CCCCccccchhhhccC-CccCCCcceeeeeeccCCCccccccCCcccccccEEEEccCCcEEE
Q 002446          546 GPPVTLSVVSRIRNGN-NGWRGTVSGAAAAATG-RVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQ  623 (921)
Q Consensus       546 ~~pv~ls~v~rI~~~~-~~w~~~v~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~sp~G~liq  623 (921)
                      |||++|++|+|||+++ +||.++|++++++|+| |.+.++||+|+.||+|.+....+..+...+++||||||+|+|+|||
T Consensus         1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq   80 (251)
T PF12490_consen    1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ   80 (251)
T ss_pred             CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence            5799999999999999 8999999999999999 8899999999999999777656667776889999999999999999


Q ss_pred             EeeecccCCCcccCCCCCCCCCCCC-CCCCceEEEeeeeeeecccccccccccc-cccccCCCCCcCC-CcccccccccC
Q 002446          624 YALRISTGLDVTMGVPGLGSAYDSV-PEDDPRLVVEAIQKWNICQKQARRERED-NIDIYGDNGTLDS-NKIYPEEVKDG  700 (921)
Q Consensus       624 y~L~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vep~~~Wdvcrr~~~~e~e~-~~~~~~~~~~~~~-~~~~~~~~~~~  700 (921)
                      |+|+|+.++|++++.++.+++++++ +|++|||+|||+||||||||++|+||++ +..++++++..+. ++|+++..+++
T Consensus        81 y~L~p~~~~~~~~~~~~~~~~~~~~~~~~~l~l~vep~~~Wdl~R~~~w~e~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  160 (251)
T PF12490_consen   81 YELRPSPGSDPTEGGSGNGPPSESQMDDTELRLVVEPVQQWDLCRRPNWPEREEDCVPPLPENNPLDSASKIDPSDCRKG  160 (251)
T ss_pred             EEEeeccccCcccccccccCccccccccCcceEEeeeccceeEeccccCCccchhccCCCCCCCHhhhhhhccccccccc
Confidence            9999999999999999999999999 7799999999999999999999999999 6667777765444 46777777776


Q ss_pred             C-cccCCCccccccCCCCcccccceeeeeeEEeecCC-CcccccCCeeEEEEeecCcc-ccccccccc--ceEEEeeccc
Q 002446          701 N-FASTEANGVIEKTKVSPEDKHHLYISEAELQMHPP-RIPLWAKPQIYFQSMMIKDF-KMGEENFLK--GEIEIERFPT  775 (921)
Q Consensus       701 ~-~~~~~~~~~~~~~~~~~~E~~~~ylSnaEvq~h~~-~~plW~~~qi~F~~m~~~~~-~~~~~~~~~--~e~eie~~~~  775 (921)
                      + +++.+...+ .+.+++++|+++|||||||||||++ ||||||||||+||+|.+++. ++...+..+  ||||||++|+
T Consensus       161 ~~~~~~~~~~~-~~~~~~~~e~~~~wlS~vEi~th~~phrpLW~gpQf~F~~~~~~~~~~~~~s~~~~~~~e~EIE~~~~  239 (251)
T PF12490_consen  161 NSVNPSNDSYV-SKESDSPEERDHWWLSNVEIQTHSGPHRPLWMGPQFSFKTMSSPSSSELNISSSSGEAGEIEIEKIPT  239 (251)
T ss_pred             CCccccccccc-cccCCCcccccCcEEeeeeeEeccCCccccccCCcEEEEEecCCCCccccccccccccCceeeccccc
Confidence            5 666654444 6678888999999999999999999 69999999999999998774 444555667  9999999999


Q ss_pred             cccccccCCccc
Q 002446          776 RMIEARSKDLVP  787 (921)
Q Consensus       776 ~~~~~~~~~l~p  787 (921)
                      |+||+|+|||||
T Consensus       240 ~~ve~r~k~l~p  251 (251)
T PF12490_consen  240 REVEIRRKDLLP  251 (251)
T ss_pred             cceeeeccccCC
Confidence            999999999998

The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer.

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.6e-59  Score=530.81  Aligned_cols=641  Identities=28%  Similarity=0.300  Sum_probs=459.9

Q ss_pred             CCchhHHhcceeeeccCcchhhhhhhhhccccccCCCCCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCC
Q 002446           48 KSPFRAISSYFRIVSSGASTVARSAVSVASSIVERDDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEAD  127 (921)
Q Consensus        48 ~~s~~~~s~~~~~~ss~~~t~~~~~a~~~~s~~~~~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~  127 (921)
                      |+||++||+|+|.+|||++++++++++..++-+    +.++|||+|++||+   ..+..+.||+++|.+||||||+++..
T Consensus         2 p~s~~~vs~c~k~~ssg~~~~~~s~~~~~ss~~----~e~~dqvlw~~fD~---~~~~~~~Vlll~~~~gfqv~d~~Dsp   74 (788)
T KOG2109|consen    2 PPSANSVSGCKKKNSSGHQRPQQSHQQTQSSPL----PEEEDQVLWIKFDP---KPEVLEEVLLLNREEGFQVVDETDSP   74 (788)
T ss_pred             CcccchhccchhhcccccccHHHHHHhhcCCCC----hhhhccccccccCC---chhHHHHHHHHhhccCceEEeeccCC
Confidence            899999999999999999999988766655544    56899999999997   55557899999999999999999999


Q ss_pred             CeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCC-CCCCCc
Q 002446          128 NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGN-GSSVPT  206 (921)
Q Consensus       128 ~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~-~~~~~~  206 (921)
                      .+++.++.+++++.|.+|++.|+.++. .+.|+.++|++|+|.. +...-.+.++              ++|. ....+.
T Consensus        75 ~vh~~vs~~dd~~~f~sm~~~pl~sg~-~~gf~ss~avpavv~~-t~S~p~I~~S--------------~~Gse~d~t~a  138 (788)
T KOG2109|consen   75 TVHKEVSISDDLLDFSSMDKSPLSSGP-DSGFESSDAVPAVVRT-TTSPPTIPPS--------------QTGSEQDSTQA  138 (788)
T ss_pred             ccceeeeecCCcceecccCCCCccCCC-CCccccCCceeeeccc-ccCCCcCCCC--------------CCcceeccccc
Confidence            999999999999999999999998854 5669999999999982 1111111111              0111 112345


Q ss_pred             EEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecC
Q 002446          207 VVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP  286 (921)
Q Consensus       207 tVrIWDL~Tg~~V~tL~f~s~V~sV~~S~riLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgp  286 (921)
                      -..++||++..++|.|+|+                   +|+|||+.|++..+.+.+++.+..     +.+++|+|+++++
T Consensus       139 n~~v~dl~S~~yah~l~fR-------------------qi~CfDa~tle~d~~~~~n~~p~l-----~l~VGYGplaVg~  194 (788)
T KOG2109|consen  139 NEMVVDLMSLDYAHALPFR-------------------QIHCFDAPTLEIDSMNTINTKPRL-----LLSVGYGPLAVGR  194 (788)
T ss_pred             ccceeccccccchhccccc-------------------ccccccCcccCCchhhcccccccc-----ceeecccccccee
Confidence            5778999999999999996                   899999999998888887765533     2468899999999


Q ss_pred             ceEEecCCCceecCCCccCCccccccccccc--ccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcC
Q 002446          287 RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSG--FASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQN  364 (921)
Q Consensus       287 RwLAyas~~~~~s~~GrvsPq~l~~s~~~~~--~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~  364 (921)
                      ||+||+...+.....     +..++-.+.++  +...+..++.||++.+|++|.||..+||.+|+.+++||....+.+.+
T Consensus       195 rWaaya~~~a~~vss-----~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~~g~g  269 (788)
T KOG2109|consen  195 RWAAYAQTLANQVSS-----HLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQIGTG  269 (788)
T ss_pred             eeeeeccCcchhhhh-----ccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccCCCCC
Confidence            999999765433211     11111122222  34456678999999999999999999999999999999988776644


Q ss_pred             CcccccCCCCCCCcccCcccccCC-CCE--EEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCC
Q 002446          365 SLQSAIPGGKSNGTVNGHFPDADN-VGM--VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII  441 (921)
Q Consensus       365 si~sa~~~~k~~g~v~g~~~s~~~-~G~--V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~  441 (921)
                      .-.......+ .|.+..+  ++.. .|+  +.+-|+.+.+.+.+|++|+++|++|||+++|.+|++++..|+.|++|.++
T Consensus       270 pglgg~~~~~-vGrvg~v--saesV~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRim  346 (788)
T KOG2109|consen  270 PGLGGFEEVL-VGRVGPV--SAESVLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIM  346 (788)
T ss_pred             CCCCCcCcee-ccccccc--cceeecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEec
Confidence            3221111111 1111111  2222 355  88899999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcccccCCc
Q 002446          442 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAM  521 (921)
Q Consensus       442 ~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~~~~~~~  521 (921)
                      +....... +..     -+.--+||++.+.|++|+|+-+.+|++.+|.+|+-           +.+             .
T Consensus       347 et~~t~~~-~~q-----s~~~s~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------P~l-------------s  396 (788)
T KOG2109|consen  347 ETVCTVNV-SDQ-----SLVVSPRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------PAL-------------S  396 (788)
T ss_pred             cccccccc-ccc-----ccccchhcchHHHHHHHhhhhhcceEeecccCCCC-----------ccc-------------c
Confidence            75221100 100     00111589999999999999999999999966643           111             1


Q ss_pred             CCccccCCCCCCCCCCCCcccccCCCceeeeeeeEEecCCCCCCccccchhhhccCCccCCCcceeeeeeccCCCccccc
Q 002446          522 AKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYA  601 (921)
Q Consensus       522 ~~~~~r~~~~s~l~~~~~~~l~~~~~pv~ls~v~rI~~~~~~w~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  601 (921)
                      .+.-.+|+..+.+..  ...-..++...+|...+++.-.+.-       +|+.-.++.-.+++.-+..||-...-.    
T Consensus       397 ~t~~lp~~A~~Sl~~--gl~s~g~~aa~gla~~sag~~a~s~-------~asSv~s~s~~pd~ks~gv~~gsv~k~----  463 (788)
T KOG2109|consen  397 LTCQLPAYADTSLDL--GLQSSGGLAAEGLATSSAGYTAHSY-------TASSVFSRSVKPDSKSVGVGSGSVTKA----  463 (788)
T ss_pred             cccccchhhchhhhc--cccccCcccceeeeecccccccccc-------ccceeeccccccchhhccceeeecccc----
Confidence            111123332222211  1111122335556666666654311       222223444445555555555431110    


Q ss_pred             cCCcccccccEEEEccCC-cEEEEeeecccCCCcccC-CCCCCCCCCCCCCCC-ceEEEeeeeeeecccccccccccccc
Q 002446          602 AGSSLKIKNHLLVFSPSG-CMIQYALRISTGLDVTMG-VPGLGSAYDSVPEDD-PRLVVEAIQKWNICQKQARREREDNI  678 (921)
Q Consensus       602 ~~~~~~~~~~L~v~sp~G-~liqy~L~p~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~vep~~~Wdvcrr~~~~e~e~~~  678 (921)
                      .......++.|+|+.|+| +|+||.|.++.+..-.+. ...++.-.+...|+| .++.|+|++.|+.||+.+|+|++++ 
T Consensus       464 ~q~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r-  542 (788)
T KOG2109|consen  464 NQGVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSSLAAVQHLYKLNR-  542 (788)
T ss_pred             CccchhhhhheeeecCCCCceeEEEeeccCccceeeecccccceecccccccccceEEeecccccHHHhhhhhhhhccC-
Confidence            112345799999999999 999999999998887764 556666677778888 9999999999999999999999996 


Q ss_pred             cccCCCCCcCCCcccccccccCCcccCCCccccccCCCCcccccceeeeeeEEeecCCCcccccCCeeEEEEeecCcccc
Q 002446          679 DIYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKM  758 (921)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~ylSnaEvq~h~~~~plW~~~qi~F~~m~~~~~~~  758 (921)
                        .++     +-|.+...++++..-....    .+...+.-+++|.|+-++|++||.. +|||+|.+ .||.|...+.+.
T Consensus       543 --G~T-----saKv~~~afs~dsrw~A~~----t~~~TthVfk~hpYgg~aeqrth~~-lp~vnk~s-rFhrsagl~~d~  609 (788)
T KOG2109|consen  543 --GST-----SAKVVSTAFSEDSRWLAIT----TNHATTHVFKVHPYGGKAEQRTHGD-LPFVNKES-RFHRSAGLTDDA  609 (788)
T ss_pred             --CCc-----cceeeeeEeecchhhhhhh----hcCCceeeeeeccccccccceecCC-chhccchh-hhccccCCCccc
Confidence              222     1255666666543111111    2344456789999999999999999 99999999 999999877655


Q ss_pred             ccccc--ccceEEEeeccccccccccCCcccccccccCccccccc
Q 002446          759 GEENF--LKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQAR  801 (921)
Q Consensus       759 ~~~~~--~~~e~eie~~~~~~~~~~~~~l~pv~~~~~~~~~~~~~  801 (921)
                      +.++.  .++|.||+++.++.+|.|+||||||++ .+|+|-+-.|
T Consensus       610 ~~~~s~ggg~e~ei~~~~~~t~e~r~~dllPvy~-~tS~rsr~~~  653 (788)
T KOG2109|consen  610 DVTASIGGGKEREIADSCSYTKEHRIADLLPVYA-KTSGRSRVGP  653 (788)
T ss_pred             cccccCCCCccceecccccccccccccccCCccc-ccCccccccC
Confidence            54443  455999999999999999999999999 6666654333

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=1.9e-34  Score=311.26  Aligned_cols=243  Identities=27%  Similarity=0.499  Sum_probs=212.5

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      +.++.+.+.+|+|   +.    .+|.+|..+|+++|.+++.+   +..+...+.+..++||.              +..|
T Consensus         3 ~~~~ti~~~~~Nq---d~----~~lsvGs~~Gyk~~~~~~~~---k~~~~~~~~~~IvEmLF--------------SSSL   58 (391)
T KOG2110|consen    3 GKKPTINFIGFNQ---DS----TLLSVGSKDGYKIFSCSPFE---KCFSKDTEGVSIVEMLF--------------SSSL   58 (391)
T ss_pred             CCCcceeeeeecc---ce----eEEEccCCCceeEEecCchH---HhhcccCCCeEEEEeec--------------ccce
Confidence            4577899999999   66    89999999999999999854   35677778999999995              3579


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEEEeCCE
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQ  245 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S~riLAVa~d~~  245 (921)
                      ||+|+..                               .|+.+++++++.+..++.+.|+++|.+|++|++.|+|++++.
T Consensus        59 vaiV~~~-------------------------------qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~  107 (391)
T KOG2110|consen   59 VAIVSIK-------------------------------QPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES  107 (391)
T ss_pred             eEEEecC-------------------------------CCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEccc
Confidence            9999852                               237899999999999999999999999999999999999999


Q ss_pred             EEEEECCCCcEEEEEecC-CCccCCCCCCCCCccccceeecC----ceEEecCCCceecCCCccCCcccccccccccccC
Q 002446          246 VHCFDAATLEIEYAILTN-PIVMGHPSAGGIGIGYGPLAVGP----RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS  320 (921)
Q Consensus       246 I~IwDl~T~~~l~tL~t~-p~~~g~p~~~g~~i~~~piAlgp----RwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s  320 (921)
                      |+|||+.+|+.+++|++. |++.+.            +|+++    .+|||+++                          
T Consensus       108 IyIydI~~MklLhTI~t~~~n~~gl------------~AlS~n~~n~ylAyp~s--------------------------  149 (391)
T KOG2110|consen  108 IYIYDIKDMKLLHTIETTPPNPKGL------------CALSPNNANCYLAYPGS--------------------------  149 (391)
T ss_pred             EEEEecccceeehhhhccCCCccce------------EeeccCCCCceEEecCC--------------------------
Confidence            999999999999999987 444332            34433    35665410                          


Q ss_pred             CCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC
Q 002446          321 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK  400 (921)
Q Consensus       321 ~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~  400 (921)
                                                                                        ...|.|.|||+.+.
T Consensus       150 ------------------------------------------------------------------~t~GdV~l~d~~nl  163 (391)
T KOG2110|consen  150 ------------------------------------------------------------------TTSGDVVLFDTINL  163 (391)
T ss_pred             ------------------------------------------------------------------CCCceEEEEEcccc
Confidence                                                                              12478999999999


Q ss_pred             ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccC
Q 002446          401 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD  480 (921)
Q Consensus       401 ~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPD  480 (921)
                      +++..+.+|.+++.||+|||||++|||||++||+||||.+..+              ..+|+||||...+.|++|+||||
T Consensus       164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G--------------~kl~eFRRG~~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG--------------QKLYEFRRGTYPVSIYSLSFSPD  229 (391)
T ss_pred             eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc--------------cEeeeeeCCceeeEEEEEEECCC
Confidence            9999999999999999999999999999999999999999876              78999999999888999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCC
Q 002446          481 SNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       481 g~~LAsgS~DgTVhVWdi~~~  501 (921)
                      +++|+++|.-+|||||.+...
T Consensus       230 s~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  230 SQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             CCeEEEecCCCeEEEEEeccc
Confidence            999999999999999999875

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=3e-32  Score=290.01  Aligned_cols=250  Identities=25%  Similarity=0.395  Sum_probs=208.6

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeee--eecCCEEEEEEecCCCCCccccCccccCCC
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRP  164 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS--~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rP  164 (921)
                      .+.+.+-++|+|   |.    .|+++|.++||+||++++   ++|..+  .+++++..++||.+              .+
T Consensus         4 ~~~~~lsvs~NQ---D~----ScFava~~~Gfriyn~~P---~ke~~~r~~~~~G~~~veMLfR--------------~N   59 (346)
T KOG2111|consen    4 EEPKTLSVSFNQ---DH----SCFAVATDTGFRIYNCDP---FKESASRQFIDGGFKIVEMLFR--------------SN   59 (346)
T ss_pred             ccCceeEEEEcc---CC----ceEEEEecCceEEEecCc---hhhhhhhccccCchhhhhHhhh--------------hc
Confidence            345677799999   76    799999999999999999   455444  34667999999964              48


Q ss_pred             EEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEEEeCC
Q 002446          165 LLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAA  244 (921)
Q Consensus       165 LLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S~riLAVa~d~  244 (921)
                      +||+|+++.                          ++.|.|++|.|||.....++.+|.|.++|.+|++.+..|+|.+++
T Consensus        60 ~laLVGGg~--------------------------~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~  113 (346)
T KOG2111|consen   60 YLALVGGGS--------------------------RPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLEN  113 (346)
T ss_pred             eEEEecCCC--------------------------CCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecC
Confidence            999999643                          256788999999999999999999999999999999999999999


Q ss_pred             EEEEEECC-CCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCc
Q 002446          245 QVHCFDAA-TLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS  323 (921)
Q Consensus       245 ~I~IwDl~-T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~  323 (921)
                      +|++|... +.+.++.+++.++|.|.+            ++.|                    . .              
T Consensus       114 ~I~VytF~~n~k~l~~~et~~NPkGlC------------~~~~--------------------~-~--------------  146 (346)
T KOG2111|consen  114 KIYVYTFPDNPKLLHVIETRSNPKGLC------------SLCP--------------------T-S--------------  146 (346)
T ss_pred             eEEEEEcCCChhheeeeecccCCCceE------------eecC--------------------C-C--------------
Confidence            99999998 788999999987766542            2110                    0 0              


Q ss_pred             ceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCce-
Q 002446          324 RVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV-  402 (921)
Q Consensus       324 ~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~-  402 (921)
                               .|.                               ..++|+.              ..|.|+|-|+...+. 
T Consensus       147 ---------~k~-------------------------------~LafPg~--------------k~GqvQi~dL~~~~~~  172 (346)
T KOG2111|consen  147 ---------NKS-------------------------------LLAFPGF--------------KTGQVQIVDLASTKPN  172 (346)
T ss_pred             ---------Cce-------------------------------EEEcCCC--------------ccceEEEEEhhhcCcC
Confidence                     000                               0233432              237899999876654 


Q ss_pred             -EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCC
Q 002446          403 -IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS  481 (921)
Q Consensus       403 -l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg  481 (921)
                       ...+.||.++|.||+.+-+|++|||||.+||.|||||..++              ..++++|||...|.|++|+||||+
T Consensus       173 ~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g--------------~~l~E~RRG~d~A~iy~iaFSp~~  238 (346)
T KOG2111|consen  173 APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG--------------TLLQELRRGVDRADIYCIAFSPNS  238 (346)
T ss_pred             CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC--------------cEeeeeecCCchheEEEEEeCCCc
Confidence             47889999999999999999999999999999999999987              678999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCC
Q 002446          482 NWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       482 ~~LAsgS~DgTVhVWdi~~~  501 (921)
                      .|||++|+.||+|||.+...
T Consensus       239 s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  239 SWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             cEEEEEcCCCeEEEEEeecC
Confidence            99999999999999999764

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.8e-24  Score=232.93  Aligned_cols=292  Identities=16%  Similarity=0.264  Sum_probs=219.8

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCC
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRP  164 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rP  164 (921)
                      +|+..|+.+.+.+   ||    +.|+.|..+| +.+||-...+..-.-+.+|...|.++.+.|-...+        ..| 
T Consensus       155 gH~~WVlcvawsP---Dg----k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p--------~~r-  218 (480)
T KOG0271|consen  155 GHKNWVLCVAWSP---DG----KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP--------PCR-  218 (480)
T ss_pred             CCccEEEEEEECC---Cc----chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCC--------Ccc-
Confidence            7899999999999   88    6788888555 99999988766777788999999999998754332        122 


Q ss_pred             EEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEcC-CEEEE-E
Q 002446          165 LLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS-RVVAI-C  241 (921)
Q Consensus       165 LLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~-riLAV-a  241 (921)
                      +||.++.                                 ++.|+|||+..++++..+.. ..+|..|++-+ .+|.. +
T Consensus       219 ~las~sk---------------------------------Dg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS  265 (480)
T KOG0271|consen  219 RLASSSK---------------------------------DGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS  265 (480)
T ss_pred             ceecccC---------------------------------CCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC
Confidence            4443331                                 26799999999999999875 56999999974 56666 7


Q ss_pred             eCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCce----EEecCCCceecCCCccCCccccccccccc
Q 002446          242 QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRW----LAYSGSPVVVSNDGRVNPQHLMQSRSFSG  317 (921)
Q Consensus       242 ~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRw----LAyas~~~~~s~~GrvsPq~l~~s~~~~~  317 (921)
                      .|++|++|++..+.+.+.+.+|.            ..+|.+|++..|    =||-       ++|+..++          
T Consensus       266 ~DrtIkvw~a~dG~~~r~lkGHa------------hwvN~lalsTdy~LRtgaf~-------~t~~~~~~----------  316 (480)
T KOG0271|consen  266 QDRTIKVWRALDGKLCRELKGHA------------HWVNHLALSTDYVLRTGAFD-------HTGRKPKS----------  316 (480)
T ss_pred             CCceEEEEEccchhHHHhhcccc------------hheeeeeccchhhhhccccc-------cccccCCC----------
Confidence            89999999999999999998873            345667765422    2222       12221000          


Q ss_pred             ccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEEC
Q 002446          318 FASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDI  397 (921)
Q Consensus       318 ~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl  397 (921)
                                               ..|...+.+.+|-. ..+++              |   -.++++..++++.+|+-
T Consensus       317 -------------------------~se~~~~Al~rY~~-~~~~~--------------~---erlVSgsDd~tlflW~p  353 (480)
T KOG0271|consen  317 -------------------------FSEEQKKALERYEA-VLKDS--------------G---ERLVSGSDDFTLFLWNP  353 (480)
T ss_pred             -------------------------hHHHHHHHHHHHHH-hhccC--------------c---ceeEEecCCceEEEecc
Confidence                                     00111123344421 11111              0   12456788899999996


Q ss_pred             C-CCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEE
Q 002446          398 V-SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS  476 (921)
Q Consensus       398 ~-s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIa  476 (921)
                      . +.+++..+.+|..-|..+.|||||+++|+||.|.. ||+||-.+|              +.+..| |||-. .|+.|+
T Consensus       354 ~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tG--------------k~lasf-RGHv~-~VYqva  416 (480)
T KOG0271|consen  354 FKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTG--------------KFLASF-RGHVA-AVYQVA  416 (480)
T ss_pred             cccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCc--------------chhhhh-hhccc-eeEEEE
Confidence            5 56688999999999999999999999999999965 999999987              445565 78754 499999


Q ss_pred             EccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          477 FSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       477 FSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      ||.|++.|+++|.|.|++||++.+.+-...+-+|.+++-
T Consensus       417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf  455 (480)
T KOG0271|consen  417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF  455 (480)
T ss_pred             eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE
Confidence            999999999999999999999999888888999998887

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.88  E-value=1.6e-21  Score=227.11  Aligned_cols=239  Identities=21%  Similarity=0.371  Sum_probs=176.4

Q ss_pred             EEEEEEecccCCCCCCCeEEEEEccC-cEEEEEccCC--------CCe----------------------EEeeeeecCC
Q 002446           91 VLWAGFDKLESEAGATRRVLLLGYRS-GFQVWDVEEA--------DNV----------------------HDLVSRYDGP  139 (921)
Q Consensus        91 V~w~~Fd~~~~d~~~~~~vLllG~~~-GfqVWDv~~~--------~~~----------------------~elvS~~dG~  139 (921)
                      +.++.|..   |+    ++|+.|..+ .++||.+.+.        ..+                      .+.+-+|.||
T Consensus       381 v~ca~fSd---ds----smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP  453 (707)
T KOG0263|consen  381 VTCAEFSD---DS----SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP  453 (707)
T ss_pred             ceeEeecC---Cc----chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence            55555554   44    689999855 5899999851        111                      1223357788


Q ss_pred             EEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEE
Q 002446          140 VSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYV  219 (921)
Q Consensus       140 Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V  219 (921)
                      |.-+.+.|.              +.+|.-|+.          |                       ++||+|+|.|..++
T Consensus       454 Vyg~sFsPd--------------~rfLlScSE----------D-----------------------~svRLWsl~t~s~~  486 (707)
T KOG0263|consen  454 VYGCSFSPD--------------RRFLLSCSE----------D-----------------------SSVRLWSLDTWSCL  486 (707)
T ss_pred             eeeeeeccc--------------ccceeeccC----------C-----------------------cceeeeecccceeE
Confidence            888777763              345554442          2                       78999999999999


Q ss_pred             EEEeC-CCCEEEEEEcC--CEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCC
Q 002446          220 HMLKF-RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSP  295 (921)
Q Consensus       220 ~tL~f-~s~V~sV~~S~--riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~  295 (921)
                      -..+. ..||+.|+|++  -++|. +.|.+-++|.....+.++.+.+|-.-            ++.+       +|.   
T Consensus       487 V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD------------V~cv-------~FH---  544 (707)
T KOG0263|consen  487 VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD------------VDCV-------SFH---  544 (707)
T ss_pred             EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc------------cceE-------EEC---
Confidence            88875 46999999985  46666 67889999998776666555544211            1111       121   


Q ss_pred             ceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCC
Q 002446          296 VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKS  375 (921)
Q Consensus       296 ~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~  375 (921)
                                                                            +-+.|                     
T Consensus       545 ------------------------------------------------------PNs~Y---------------------  549 (707)
T KOG0263|consen  545 ------------------------------------------------------PNSNY---------------------  549 (707)
T ss_pred             ------------------------------------------------------Ccccc---------------------
Confidence                                                                  11122                     


Q ss_pred             CCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCC
Q 002446          376 NGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT  455 (921)
Q Consensus       376 ~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~  455 (921)
                             .+++..|.+|++||+.+|..+..|.+|+++|++|+|||+|++||+|+.||. |+|||+..+            
T Consensus       550 -------~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~~------------  609 (707)
T KOG0263|consen  550 -------VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLANG------------  609 (707)
T ss_pred             -------cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCCC------------
Confidence                   123456789999999999999999999999999999999999999999996 999999976            


Q ss_pred             ceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc
Q 002446          456 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS  504 (921)
Q Consensus       456 ~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~  504 (921)
                        ..+..+ +|| ...|++|.||.||..||+++.|.+|++||+....+.
T Consensus       610 --~~v~~l-~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  610 --SLVKQL-KGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             --cchhhh-hcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence              233344 677 456999999999999999999999999999865444

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=1.6e-21  Score=214.04  Aligned_cols=256  Identities=15%  Similarity=0.229  Sum_probs=201.3

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCC
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRP  164 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rP  164 (921)
                      +..-.|..+.|-.   ++    ..|+.|.-.| .+||.++.. +...++..|.+.|.++.+-|.-            +--
T Consensus       173 gd~rPis~~~fS~---ds----~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~------------~~~  232 (459)
T KOG0272|consen  173 GDTRPISGCSFSR---DS----KHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVD------------SDL  232 (459)
T ss_pred             cCCCcceeeEeec---CC----CeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCC------------Ccc
Confidence            3456699999988   77    5777777666 699999985 6666788899999999998731            111


Q ss_pred             EEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-
Q 002446          165 LLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-  240 (921)
Q Consensus       165 LLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-  240 (921)
                      -||.|.                                 .+++|++|++.+...+..|.. ...|..|+|.  +++|+. 
T Consensus       233 ~lat~s---------------------------------~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta  279 (459)
T KOG0272|consen  233 NLATAS---------------------------------ADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA  279 (459)
T ss_pred             ceeeec---------------------------------cCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec
Confidence            233332                                 227899999999999999875 5799999994  789988 


Q ss_pred             EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccC
Q 002446          241 CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS  320 (921)
Q Consensus       241 a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s  320 (921)
                      +.|.+=++||+.|.+.+...++|...            +  .     -|||-             |              
T Consensus       280 sfD~tWRlWD~~tk~ElL~QEGHs~~------------v--~-----~iaf~-------------~--------------  313 (459)
T KOG0272|consen  280 SFDSTWRLWDLETKSELLLQEGHSKG------------V--F-----SIAFQ-------------P--------------  313 (459)
T ss_pred             ccccchhhcccccchhhHhhcccccc------------c--c-----eeEec-------------C--------------
Confidence            89999999999999888777777431            1  1     12332             1              


Q ss_pred             CCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC
Q 002446          321 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK  400 (921)
Q Consensus       321 ~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~  400 (921)
                      .|+++                                                          ++++.|..-+|||+.++
T Consensus       314 DGSL~----------------------------------------------------------~tGGlD~~~RvWDlRtg  335 (459)
T KOG0272|consen  314 DGSLA----------------------------------------------------------ATGGLDSLGRVWDLRTG  335 (459)
T ss_pred             CCcee----------------------------------------------------------eccCccchhheeecccC
Confidence            12211                                                          22345667799999999


Q ss_pred             ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEcc-
Q 002446          401 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-  479 (921)
Q Consensus       401 ~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSP-  479 (921)
                      +++-.|.+|..+|..|+|||+|..|||||.|++ +||||+...              ..+|.+. +|+ .-|..|.|+| 
T Consensus       336 r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r--------------~~ly~ip-AH~-nlVS~Vk~~p~  398 (459)
T KOG0272|consen  336 RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMR--------------SELYTIP-AHS-NLVSQVKYSPQ  398 (459)
T ss_pred             cEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeeccc--------------ccceecc-ccc-chhhheEeccc
Confidence            999999999999999999999999999999987 899999874              3466653 443 3499999999 


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          480 DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       480 Dg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      .|++|+++|-|+|++||.-........+.+|.+.+.
T Consensus       399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~  434 (459)
T KOG0272|consen  399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI  434 (459)
T ss_pred             CCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence            899999999999999999999988899999987765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3.5e-21  Score=209.10  Aligned_cols=256  Identities=14%  Similarity=0.190  Sum_probs=193.7

Q ss_pred             CCCCCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccC
Q 002446           84 DESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        84 ~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~  162 (921)
                      ..+|.+.|+.+.|..   ++    +.|+.|. +..+++||+++ .-...++.+|...|.|+.+.|+.             
T Consensus       111 ~~GH~e~Vl~~~fsp---~g----~~l~tGsGD~TvR~WD~~T-eTp~~t~KgH~~WVlcvawsPDg-------------  169 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSP---TG----SRLVTGSGDTTVRLWDLDT-ETPLFTCKGHKNWVLCVAWSPDG-------------  169 (480)
T ss_pred             cCCCCCcEEEEEecC---CC----ceEEecCCCceEEeeccCC-CCcceeecCCccEEEEEEECCCc-------------
Confidence            458999999999998   66    5666666 66799999998 34556788999999999999851             


Q ss_pred             CCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEE-EEEe-CCCCEEEEEEc------
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYV-HMLK-FRSPIYSVRCS------  234 (921)
Q Consensus       163 rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V-~tL~-f~s~V~sV~~S------  234 (921)
                       ..||  ++ .                              ..++|++||-++|+++ ..|. ++-.|.++++-      
T Consensus       170 -k~iA--SG-~------------------------------~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p  215 (480)
T KOG0271|consen  170 -KKIA--SG-S------------------------------KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP  215 (480)
T ss_pred             -chhh--cc-c------------------------------cCCeEEEecCCCCCcccccccCcccceeEEeecccccCC
Confidence             1122  11 0                              2278999999999765 4555 46689999994      


Q ss_pred             -CCEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccc
Q 002446          235 -SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQS  312 (921)
Q Consensus       235 -~riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s  312 (921)
                       .|+||. +-|+.|+|||+.-+++++++.+|.++..|            +.       ..                    
T Consensus       216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTC------------vr-------wG--------------------  256 (480)
T KOG0271|consen  216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTC------------VR-------WG--------------------  256 (480)
T ss_pred             CccceecccCCCCEEEEEccCceEEEEeccCccceEE------------EE-------Ec--------------------
Confidence             267777 66899999999999999998877432111            10       00                    


Q ss_pred             cccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEE
Q 002446          313 RSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMV  392 (921)
Q Consensus       313 ~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V  392 (921)
                               |+               |                                          .+.++..|++|
T Consensus       257 ---------G~---------------g------------------------------------------liySgS~DrtI  270 (480)
T KOG0271|consen  257 ---------GE---------------G------------------------------------------LIYSGSQDRTI  270 (480)
T ss_pred             ---------CC---------------c------------------------------------------eEEecCCCceE
Confidence                     00               0                                          11234668999


Q ss_pred             EEEECCCCceEEEeccCCCCeEEEEEC-----------CCCCE-------------------------EEEEecCCCEEE
Q 002446          393 IVRDIVSKNVIAQFRAHKSPISALCFD-----------PSGIL-------------------------LVTASVQGHNIN  436 (921)
Q Consensus       393 ~IwDl~s~~~l~~~~aH~~pIsaLaFS-----------PdGtl-------------------------LATaS~DGt~Ir  436 (921)
                      ++|+...|.++..|++|.+.|+.|+.|           |.|..                         |++||+|.+ +-
T Consensus       271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t-lf  349 (480)
T KOG0271|consen  271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT-LF  349 (480)
T ss_pred             EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce-EE
Confidence            999999999999999999999999866           54555                         999999998 78


Q ss_pred             EEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          437 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       437 IWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      +|+-...             .+.+.++ .| +.+.|..++||||++|+|++|.|..|++|+-.+++-..+|++|-..+.
T Consensus       350 lW~p~~~-------------kkpi~rm-tg-Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VY  413 (480)
T KOG0271|consen  350 LWNPFKS-------------KKPITRM-TG-HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVY  413 (480)
T ss_pred             Eeccccc-------------ccchhhh-hc-hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeE
Confidence            9986542             1222222 24 345699999999999999999999999999999988899999955544

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.87  E-value=2.3e-20  Score=194.13  Aligned_cols=275  Identities=19%  Similarity=0.282  Sum_probs=190.3

Q ss_pred             eEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccc
Q 002446          108 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA  187 (921)
Q Consensus       108 ~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~  187 (921)
                      .+...||+..+|.|...+ |.+...+...|+.|..+++.|+              +.+||+++.                
T Consensus        12 iLvsA~YDhTIRfWqa~t-G~C~rTiqh~dsqVNrLeiTpd--------------k~~LAaa~~----------------   60 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALT-GICSRTIQHPDSQVNRLEITPD--------------KKDLAAAGN----------------   60 (311)
T ss_pred             EEEeccCcceeeeeehhc-CeEEEEEecCccceeeEEEcCC--------------cchhhhccC----------------
Confidence            445568999999999998 7888888888999999999874              234543331                


Q ss_pred             cCCCCCCcCCCCCCCCCCcEEEEEECCCCc--EEEEEeCC-CCEEEEEEc--CCEEEE-EeCCEEEEEECCCCcEEEEEe
Q 002446          188 CNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLKFR-SPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAIL  261 (921)
Q Consensus       188 ~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~--~V~tL~f~-s~V~sV~~S--~riLAV-a~d~~I~IwDl~T~~~l~tL~  261 (921)
                                        -.||+||+.+++  .+.++... ..|.+|.|-  +|.+.. +.|++++|||++...+.+.+.
T Consensus        61 ------------------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~  122 (311)
T KOG0315|consen   61 ------------------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ  122 (311)
T ss_pred             ------------------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc
Confidence                              359999999986  57777765 688888884  788887 778999999999977654443


Q ss_pred             cCCCccCCCCCCCCCccccceeecC--ceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcce
Q 002446          262 TNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG  339 (921)
Q Consensus       262 t~p~~~g~p~~~g~~i~~~piAlgp--RwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasG  339 (921)
                       ++.            .++.+.+.|  --|-..+.                                           +|
T Consensus       123 -~~s------------pVn~vvlhpnQteLis~dq-------------------------------------------sg  146 (311)
T KOG0315|consen  123 -HNS------------PVNTVVLHPNQTELISGDQ-------------------------------------------SG  146 (311)
T ss_pred             -CCC------------CcceEEecCCcceEEeecC-------------------------------------------CC
Confidence             211            122333322  01111100                                           12


Q ss_pred             eEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC------ceEEEeccCCCCe
Q 002446          340 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK------NVIAQFRAHKSPI  413 (921)
Q Consensus       340 l~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~------~~l~~~~aH~~pI  413 (921)
                      -+.++|.+-+..+   ..+.|+...++++..=.+.  |   ..++.+.+.|...+|++-+.      .++..|++|++-|
T Consensus       147 ~irvWDl~~~~c~---~~liPe~~~~i~sl~v~~d--g---sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~i  218 (311)
T KOG0315|consen  147 NIRVWDLGENSCT---HELIPEDDTSIQSLTVMPD--G---SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHI  218 (311)
T ss_pred             cEEEEEccCCccc---cccCCCCCcceeeEEEcCC--C---cEEEEecCCccEEEEEccCCCccccceEhhheecccceE
Confidence            2233333322221   1245665544443211110  1   12345567799999998764      4778899999999


Q ss_pred             EEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcE
Q 002446          414 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS  493 (921)
Q Consensus       414 saLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTV  493 (921)
                      ..+.||||+++|||||.|.+ ++||++...             ...-..+ .|+. .-+++++||.||+||+++|.|+++
T Consensus       219 l~C~lSPd~k~lat~ssdkt-v~iwn~~~~-------------~kle~~l-~gh~-rWvWdc~FS~dg~YlvTassd~~~  282 (311)
T KOG0315|consen  219 LRCLLSPDVKYLATCSSDKT-VKIWNTDDF-------------FKLELVL-TGHQ-RWVWDCAFSADGEYLVTASSDHTA  282 (311)
T ss_pred             EEEEECCCCcEEEeecCCce-EEEEecCCc-------------eeeEEEe-ecCC-ceEEeeeeccCccEEEecCCCCce
Confidence            99999999999999999987 899998863             1111223 2432 249999999999999999999999


Q ss_pred             EEEecCCCCCceeecCCC
Q 002446          494 HLFAINPLGGSVNFQPTD  511 (921)
Q Consensus       494 hVWdi~~~g~~~~l~~H~  511 (921)
                      |+|++...++..-.++|.
T Consensus       283 rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  283 RLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             eecccccCceeeecCCcc
Confidence            999999988878888884

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.87  E-value=7.1e-20  Score=205.24  Aligned_cols=405  Identities=13%  Similarity=0.199  Sum_probs=251.3

Q ss_pred             hcccccCCCC--CCCCCccee-cCCCCchhHHhcceeeeccCc--chhh-hhh-hhhcccccc---------CCCCCCCC
Q 002446           26 FSGMRNSTDG--PKPQNGVVS-RSTKSPFRAISSYFRIVSSGA--STVA-RSA-VSVASSIVE---------RDDESSHD   89 (921)
Q Consensus        26 ~~~~~~~~~~--~~~~~g~~~-~~~~~s~~~~s~~~~~~ss~~--~t~~-~~~-a~~~~s~~~---------~~~~~~kd   89 (921)
                      ++|||--|-|  |.+ .|-++ -.+=+|.--|+|-=|.|-|-.  .|-+ |.+ .|==++|+=         .....|..
T Consensus       113 ~ds~RI~avGEGrer-fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk  191 (603)
T KOG0318|consen  113 FDSKRIAAVGEGRER-FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK  191 (603)
T ss_pred             CCCcEEEEEecCccc-eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccc
Confidence            6889965554  444 55433 236677777777766665542  1111 000 111111111         12335666


Q ss_pred             cEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeee--eecCCEEEEEEecCCCCCccccCccccCCCEEE
Q 002446           90 QVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLV  167 (921)
Q Consensus        90 ~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS--~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLA  167 (921)
                      =|..++|.+   ||.   ++..+|.++.+-+||=.+...+.++-+  .|.|.|..+.++|+.             .. ++
T Consensus       192 FV~~VRysP---DG~---~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-------------~~-~~  251 (603)
T KOG0318|consen  192 FVNCVRYSP---DGS---RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-------------TQ-FL  251 (603)
T ss_pred             ceeeEEECC---CCC---eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-------------ce-EE
Confidence            799999999   774   889999999999999998655666552  689999999999852             12 33


Q ss_pred             EEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEE-----cCCEEEEEe
Q 002446          168 FCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRC-----SSRVVAICQ  242 (921)
Q Consensus       168 vv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~-----S~riLAVa~  242 (921)
                      .|+.          |                       .++||||..++++++++.+.+.|.+...     +.++|.|++
T Consensus       252 T~Sa----------D-----------------------kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl  298 (603)
T KOG0318|consen  252 TVSA----------D-----------------------KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL  298 (603)
T ss_pred             EecC----------C-----------------------ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence            3332          1                       7899999999999999999776544433     467888899


Q ss_pred             CCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecC--ceEEecCCC--ceecCCCccCCcccccccccccc
Q 002446          243 AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGF  318 (921)
Q Consensus       243 d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgp--RwLAyas~~--~~~s~~GrvsPq~l~~s~~~~~~  318 (921)
                      .+.|..+++..+..++++.+|..            ....+++++  .+|-.++.+  +..|..|.-....+.+.      
T Consensus       299 ~G~in~ln~~d~~~~~~i~GHnK------------~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~------  360 (603)
T KOG0318|consen  299 SGTINYLNPSDPSVLKVISGHNK------------SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK------  360 (603)
T ss_pred             CcEEEEecccCCChhheeccccc------------ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc------
Confidence            99999999999998888888743            122344444  344333333  22343332211111100      


Q ss_pred             cCCCcceeehhhhcchhhcc-ee------EecCCcc----------ccccccccccccCCC-------------------
Q 002446          319 ASNGSRVAHYAKESSKHLAA-GI------VNLGDLG----------YKKLSQYCSEFLPDS-------------------  362 (921)
Q Consensus       319 ~s~g~~Va~~A~~~sK~Las-Gl------~~lGd~g----------~k~ls~y~~~~~p~~-------------------  362 (921)
                       ..+..+...+...+.++.. |+      ..+.+.+          .+++.   ....+++                   
T Consensus       361 -~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~---lav~~d~~~avv~~~~~iv~l~~~~~  436 (603)
T KOG0318|consen  361 -GHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKG---LAVLSDGGTAVVACISDIVLLQDQTK  436 (603)
T ss_pred             -cccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCcee---EEEcCCCCEEEEEecCcEEEEecCCc
Confidence             0111122222211111110 00      0011111          11100   0000000                   


Q ss_pred             -------cCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCc--eEEEeccCCCCeEEEEECCCCCEEEEEecCCC
Q 002446          363 -------QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPSGILLVTASVQGH  433 (921)
Q Consensus       363 -------~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~--~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt  433 (921)
                             ..+...|....      ...++-++.||.|+||.+....  ....+..|..+|++++|||||+|||+++..+.
T Consensus       437 ~~~~~~~y~~s~vAv~~~------~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk  510 (603)
T KOG0318|consen  437 VSSIPIGYESSAVAVSPD------GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK  510 (603)
T ss_pred             ceeeccccccceEEEcCC------CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc
Confidence                   00000111000      1123456789999999998755  34567799999999999999999999999986


Q ss_pred             EEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee-cCCCC
Q 002446          434 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDA  512 (921)
Q Consensus       434 ~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l-~~H~~  512 (921)
                       +-+||+.+.               ....-+.++++++|.+|+||||+++||+||.|.+|+||.+..+...+.+ .+|  
T Consensus       511 -vv~yd~~s~---------------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH--  572 (603)
T KOG0318|consen  511 -VVLYDVASR---------------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH--  572 (603)
T ss_pred             -EEEEEcccC---------------ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc--
Confidence             899999875               2234456778899999999999999999999999999999988777665 456  


Q ss_pred             CcccccCCcCCccccCCCCCCCCCCCCcccccC
Q 002446          513 NFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCAS  545 (921)
Q Consensus       513 ~~~~~~~~~~~~~~r~~~~s~l~~~~~~~l~~~  545 (921)
                                    ++. +..+.|+++.++..+
T Consensus       573 --------------~~g-Vn~v~wlde~tvvSs  590 (603)
T KOG0318|consen  573 --------------LGG-VNSVAWLDESTVVSS  590 (603)
T ss_pred             --------------ccC-ceeEEEecCceEEec
Confidence                          444 667888888887543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.84  E-value=4.8e-18  Score=173.65  Aligned_cols=251  Identities=18%  Similarity=0.308  Sum_probs=184.9

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCC
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRP  164 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rP  164 (921)
                      +|++.|..+.|.+   ++    .+|+.|. ++.+++||+++ ++....+..+..++..+.+.|.              ..
T Consensus         7 ~h~~~i~~~~~~~---~~----~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~--------------~~   64 (289)
T cd00200           7 GHTGGVTCVAFSP---DG----KLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASAD--------------GT   64 (289)
T ss_pred             ccCCCEEEEEEcC---CC----CEEEEeecCcEEEEEEeeC-CCcEEEEecCCcceeEEEECCC--------------CC
Confidence            6889999999988   54    4566565 66799999987 3455556667788877777763              13


Q ss_pred             EEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEcC--CEEEEE
Q 002446          165 LLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAIC  241 (921)
Q Consensus       165 LLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~--riLAVa  241 (921)
                      +|++++.                                 .+.|++||+.+++.+..+.. ...|..+.+++  ++++++
T Consensus        65 ~l~~~~~---------------------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  111 (289)
T cd00200          65 YLASGSS---------------------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS  111 (289)
T ss_pred             EEEEEcC---------------------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEe
Confidence            5554442                                 16799999999888888775 45899999975  788877


Q ss_pred             e-CCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccC
Q 002446          242 Q-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS  320 (921)
Q Consensus       242 ~-d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s  320 (921)
                      . ++.|++||+.+++....+..+..               ++    ..+++..             +             
T Consensus       112 ~~~~~i~~~~~~~~~~~~~~~~~~~---------------~i----~~~~~~~-------------~-------------  146 (289)
T cd00200         112 SRDKTIKVWDVETGKCLTTLRGHTD---------------WV----NSVAFSP-------------D-------------  146 (289)
T ss_pred             cCCCeEEEEECCCcEEEEEeccCCC---------------cE----EEEEEcC-------------c-------------
Confidence            6 89999999998887776654321               01    1122220             0             


Q ss_pred             CCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC
Q 002446          321 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK  400 (921)
Q Consensus       321 ~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~  400 (921)
                       +.                                                          .++.+..+|.|++||+.++
T Consensus       147 -~~----------------------------------------------------------~l~~~~~~~~i~i~d~~~~  167 (289)
T cd00200         147 -GT----------------------------------------------------------FVASSSQDGTIKLWDLRTG  167 (289)
T ss_pred             -CC----------------------------------------------------------EEEEEcCCCcEEEEEcccc
Confidence             00                                                          0111224688999999999


Q ss_pred             ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccC
Q 002446          401 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD  480 (921)
Q Consensus       401 ~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPD  480 (921)
                      +.+..+..|..+|.+++|+|+|+.|++++.+|. |++||+..+              ..+..+. ++ ...|.+++|+|+
T Consensus       168 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~--------------~~~~~~~-~~-~~~i~~~~~~~~  230 (289)
T cd00200         168 KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTG--------------KCLGTLR-GH-ENGVNSVAFSPD  230 (289)
T ss_pred             ccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCC--------------ceecchh-hc-CCceEEEEEcCC
Confidence            999999999999999999999999999999987 899999864              2222331 22 235999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 002446          481 SNWIMISSSRGTSHLFAINPLGGSVNFQPTDA  512 (921)
Q Consensus       481 g~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~  512 (921)
                      +.++++++.||++++|++........+..|..
T Consensus       231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~  262 (289)
T cd00200         231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTN  262 (289)
T ss_pred             CcEEEEEcCCCcEEEEEcCCceeEEEccccCC
Confidence            99999999999999999988666666666643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.83  E-value=6.6e-20  Score=201.46  Aligned_cols=242  Identities=19%  Similarity=0.247  Sum_probs=184.3

Q ss_pred             CCCCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccC
Q 002446           83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~  162 (921)
                      ...+|+++|..+.|-+.. ++   ..+...++++.+++|+++....+.+ +-.|...|.-++|-|..             
T Consensus       212 ~l~gH~~~v~~~~fhP~~-~~---~~lat~s~Dgtvklw~~~~e~~l~~-l~gH~~RVs~VafHPsG-------------  273 (459)
T KOG0272|consen  212 TLRGHTSRVGAAVFHPVD-SD---LNLATASADGTVKLWKLSQETPLQD-LEGHLARVSRVAFHPSG-------------  273 (459)
T ss_pred             EEeccccceeeEEEccCC-Cc---cceeeeccCCceeeeccCCCcchhh-hhcchhhheeeeecCCC-------------
Confidence            346899999999999933 12   2455556677799999987433333 44577778888887641             


Q ss_pred             CCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEE
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVA  239 (921)
Q Consensus       163 rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLA  239 (921)
                       .+|+..+                                 .+.+-|+||+.|++.+...+. ...|++|+|.  +-+++
T Consensus       274 -~~L~Tas---------------------------------fD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~  319 (459)
T KOG0272|consen  274 -KFLGTAS---------------------------------FDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAA  319 (459)
T ss_pred             -ceeeecc---------------------------------cccchhhcccccchhhHhhcccccccceeEecCCCceee
Confidence             2333222                                 126789999999998887765 5599999996  56777


Q ss_pred             E-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccc
Q 002446          240 I-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF  318 (921)
Q Consensus       240 V-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~  318 (921)
                      . ++|..-+|||++|++++-.|.+|..+.              ++     ++|+             |.           
T Consensus       320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I--------------~~-----V~fs-------------PN-----------  356 (459)
T KOG0272|consen  320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEI--------------LS-----VAFS-------------PN-----------  356 (459)
T ss_pred             ccCccchhheeecccCcEEEEecccccce--------------ee-----EeEC-------------CC-----------
Confidence            6 788899999999999999998874310              11     1222             10           


Q ss_pred             cCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECC
Q 002446          319 ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV  398 (921)
Q Consensus       319 ~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~  398 (921)
                         |                         |                                 ++++++.|++++|||+.
T Consensus       357 ---G-------------------------y---------------------------------~lATgs~Dnt~kVWDLR  375 (459)
T KOG0272|consen  357 ---G-------------------------Y---------------------------------HLATGSSDNTCKVWDLR  375 (459)
T ss_pred             ---c-------------------------e---------------------------------EEeecCCCCcEEEeeec
Confidence               1                         0                                 23456778999999999


Q ss_pred             CCceEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEE
Q 002446          399 SKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF  477 (921)
Q Consensus       399 s~~~l~~~~aH~~pIsaLaFSP-dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaF  477 (921)
                      ..+++.++.+|..-|+.|+|+| .|.+|+|||.|++ ++||...+.              .++..| -||. .+|-++.+
T Consensus       376 ~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~--------------~~~ksL-aGHe-~kV~s~Di  438 (459)
T KOG0272|consen  376 MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTW--------------SPLKSL-AGHE-GKVISLDI  438 (459)
T ss_pred             ccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCc--------------ccchhh-cCCc-cceEEEEe
Confidence            9999999999999999999999 7999999999987 899987764              345555 3665 46999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEe
Q 002446          478 SDDSNWIMISSSRGTSHLFA  497 (921)
Q Consensus       478 SPDg~~LAsgS~DgTVhVWd  497 (921)
                      ||||+++++++.|+|+++|.
T Consensus       439 s~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  439 SPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccCCceEEEeccCceeeecc
Confidence            99999999999999999995

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.82  E-value=1.7e-17  Score=169.63  Aligned_cols=237  Identities=17%  Similarity=0.299  Sum_probs=173.5

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      .+...|..+.|..   ++   +.+++.+.++.++|||++.. +....+..+.+.|.++.+.|.              ..+
T Consensus        49 ~~~~~i~~~~~~~---~~---~~l~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~--------------~~~  107 (289)
T cd00200          49 GHTGPVRDVAASA---DG---TYLASGSSDKTIRLWDLETG-ECVRTLTGHTSYVSSVAFSPD--------------GRI  107 (289)
T ss_pred             cCCcceeEEEECC---CC---CEEEEEcCCCeEEEEEcCcc-cceEEEeccCCcEEEEEEcCC--------------CCE
Confidence            4566777888876   44   24555555777999999873 344445567788999888763              245


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-CCCCEEEEEEcC--CEEEEEe
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS--RVVAICQ  242 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S~--riLAVa~  242 (921)
                      ++.++.                                 .+.|++||+++++.+..+. +...|..+.+++  ++|+++.
T Consensus       108 ~~~~~~---------------------------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  154 (289)
T cd00200         108 LSSSSR---------------------------------DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS  154 (289)
T ss_pred             EEEecC---------------------------------CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence            544431                                 1569999999999988887 567899999975  7777766


Q ss_pred             -CCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCC
Q 002446          243 -AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN  321 (921)
Q Consensus       243 -d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~  321 (921)
                       ++.|++||+.+++.+..+..+..               ++    .-+++.             |+              
T Consensus       155 ~~~~i~i~d~~~~~~~~~~~~~~~---------------~i----~~~~~~-------------~~--------------  188 (289)
T cd00200         155 QDGTIKLWDLRTGKCVATLTGHTG---------------EV----NSVAFS-------------PD--------------  188 (289)
T ss_pred             CCCcEEEEEccccccceeEecCcc---------------cc----ceEEEC-------------CC--------------
Confidence             89999999998877666654311               00    112222             00              


Q ss_pred             CcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCc
Q 002446          322 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN  401 (921)
Q Consensus       322 g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~  401 (921)
                      +.                                                          .++.+..+|.|++||+.+++
T Consensus       189 ~~----------------------------------------------------------~l~~~~~~~~i~i~d~~~~~  210 (289)
T cd00200         189 GE----------------------------------------------------------KLLSSSSDGTIKLWDLSTGK  210 (289)
T ss_pred             cC----------------------------------------------------------EEEEecCCCcEEEEECCCCc
Confidence            00                                                          01112236889999999999


Q ss_pred             eEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCC
Q 002446          402 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS  481 (921)
Q Consensus       402 ~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg  481 (921)
                      .+..++.|..+|.+++|+|++.++++++.+|+ |++||+..+              ..+..+. ++ ...|.+++|+|++
T Consensus       211 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~--------------~~~~~~~-~~-~~~i~~~~~~~~~  273 (289)
T cd00200         211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTG--------------ECVQTLS-GH-TNSVTSLAWSPDG  273 (289)
T ss_pred             eecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCc--------------eeEEEcc-cc-CCcEEEEEECCCC
Confidence            99999999999999999999999999998887 899999864              3334443 33 3459999999999


Q ss_pred             CEEEEEeCCCcEEEEe
Q 002446          482 NWIMISSSRGTSHLFA  497 (921)
Q Consensus       482 ~~LAsgS~DgTVhVWd  497 (921)
                      ++|++++.|++++||+
T Consensus       274 ~~l~~~~~d~~i~iw~  289 (289)
T cd00200         274 KRLASGSADGTIRIWD  289 (289)
T ss_pred             CEEEEecCCCeEEecC
Confidence            9999999999999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.81  E-value=4.2e-18  Score=197.05  Aligned_cols=248  Identities=18%  Similarity=0.301  Sum_probs=178.8

Q ss_pred             CcEEEEEEecccCCCCCCCeEEEEEccC--cEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEE
Q 002446           89 DQVLWAGFDKLESEAGATRRVLLLGYRS--GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLL  166 (921)
Q Consensus        89 d~V~w~~Fd~~~~d~~~~~~vLllG~~~--GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLL  166 (921)
                      -.|+-+.|+.   .|    .-|++|...  .+-||+...-.=+.+ ...|-..+.++++.|+.              .++
T Consensus       308 ~~I~t~~~N~---tG----DWiA~g~~klgQLlVweWqsEsYVlK-QQgH~~~i~~l~YSpDg--------------q~i  365 (893)
T KOG0291|consen  308 QKILTVSFNS---TG----DWIAFGCSKLGQLLVWEWQSESYVLK-QQGHSDRITSLAYSPDG--------------QLI  365 (893)
T ss_pred             ceeeEEEecc---cC----CEEEEcCCccceEEEEEeeccceeee-ccccccceeeEEECCCC--------------cEE
Confidence            3477777776   44    578888876  578999876211111 23566789999998852              344


Q ss_pred             EEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-Ee
Q 002446          167 VFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQ  242 (921)
Q Consensus       167 Avv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-a~  242 (921)
                      |..++          |                       ++|||||..+|-|+.++. +.+.|.+|.|.  ++.|.. ++
T Consensus       366 aTG~e----------D-----------------------gKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSL  412 (893)
T KOG0291|consen  366 ATGAE----------D-----------------------GKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL  412 (893)
T ss_pred             EeccC----------C-----------------------CcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeec
Confidence            42221          2                       789999999999999985 67899999996  555554 89


Q ss_pred             CCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCC
Q 002446          243 AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG  322 (921)
Q Consensus       243 d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g  322 (921)
                      |++|+.||+...++-+|+.. |.+          +.+..+|+       -             |              .|
T Consensus       413 DGtVRAwDlkRYrNfRTft~-P~p----------~Qfscvav-------D-------------~--------------sG  447 (893)
T KOG0291|consen  413 DGTVRAWDLKRYRNFRTFTS-PEP----------IQFSCVAV-------D-------------P--------------SG  447 (893)
T ss_pred             CCeEEeeeecccceeeeecC-CCc----------eeeeEEEE-------c-------------C--------------CC
Confidence            99999999999988877643 322          11222222       1             0              02


Q ss_pred             cceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCce
Q 002446          323 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV  402 (921)
Q Consensus       323 ~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~  402 (921)
                      .+|-                                                         +.+...-.|.||++++|++
T Consensus       448 elV~---------------------------------------------------------AG~~d~F~IfvWS~qTGql  470 (893)
T KOG0291|consen  448 ELVC---------------------------------------------------------AGAQDSFEIFVWSVQTGQL  470 (893)
T ss_pred             CEEE---------------------------------------------------------eeccceEEEEEEEeecCee
Confidence            2210                                                         0011224699999999999


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCC
Q 002446          403 IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN  482 (921)
Q Consensus       403 l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~  482 (921)
                      +..+.+|.+||.+|+|+|+|.+||++|.|.| ||+||+-..          .+.+   -++.   ....+..++|+|||+
T Consensus       471 lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s----------~~~v---Etl~---i~sdvl~vsfrPdG~  533 (893)
T KOG0291|consen  471 LDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSS----------SGTV---ETLE---IRSDVLAVSFRPDGK  533 (893)
T ss_pred             eehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeecc----------Ccee---eeEe---eccceeEEEEcCCCC
Confidence            9999999999999999999999999999987 999999763          0112   2332   123589999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCCceeecCC
Q 002446          483 WIMISSSRGTSHLFAINPLGGSVNFQPT  510 (921)
Q Consensus       483 ~LAsgS~DgTVhVWdi~~~g~~~~l~~H  510 (921)
                      -||+++.||.|-+||+......-++.+-
T Consensus       534 elaVaTldgqItf~d~~~~~q~~~Idgr  561 (893)
T KOG0291|consen  534 ELAVATLDGQITFFDIKEAVQVGSIDGR  561 (893)
T ss_pred             eEEEEEecceEEEEEhhhceeeccccch
Confidence            9999999999999999987776666553

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=2.6e-18  Score=186.32  Aligned_cols=255  Identities=12%  Similarity=0.201  Sum_probs=192.0

Q ss_pred             CCCCCCcEEEEEEecccCCCCCCCeEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccC
Q 002446           84 DESSHDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        84 ~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~  162 (921)
                      ..+|.+-|.-++|+.   .|    ++|+.+..+- +++||.+..-.+.+.+.+|+-.|.++.++|..             
T Consensus       146 LrGHt~sv~di~~~a---~G----k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-------------  205 (406)
T KOG0295|consen  146 LRGHTDSVFDISFDA---SG----KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-------------  205 (406)
T ss_pred             hhccccceeEEEEec---Cc----cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-------------
Confidence            347888899999988   55    7888888776 99999998555666778899999999999841             


Q ss_pred             CCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEE
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVA  239 (921)
Q Consensus       163 rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLA  239 (921)
                       ..|+.|+.                                 +.+|+.|++.||.++.++.- +..|..|+.+  +.++|
T Consensus       206 -d~ilS~sr---------------------------------D~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~A  251 (406)
T KOG0295|consen  206 -DHILSCSR---------------------------------DNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIA  251 (406)
T ss_pred             -Ceeeeccc---------------------------------ccceeEEecccceeEEeccCchHhEEEEEecCCeeEEE
Confidence             34444442                                 27899999999999999976 5689999997  57788


Q ss_pred             E-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccc
Q 002446          240 I-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF  318 (921)
Q Consensus       240 V-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~  318 (921)
                      . +.+.++++|-+.+++|+..+..|.-+.                   ..+|++.....        |..          
T Consensus       252 s~s~dqtl~vW~~~t~~~k~~lR~hEh~v-------------------Eci~wap~~~~--------~~i----------  294 (406)
T KOG0295|consen  252 SCSNDQTLRVWVVATKQCKAELREHEHPV-------------------ECIAWAPESSY--------PSI----------  294 (406)
T ss_pred             ecCCCceEEEEEeccchhhhhhhccccce-------------------EEEEecccccC--------cch----------
Confidence            7 567799999999998877776653211                   11233311000        000          


Q ss_pred             cCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECC
Q 002446          319 ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV  398 (921)
Q Consensus       319 ~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~  398 (921)
                        .+              +                     .+..++            +   ..+..+..|++|++||+.
T Consensus       295 --~~--------------a---------------------t~~~~~------------~---~~l~s~SrDktIk~wdv~  322 (406)
T KOG0295|consen  295 --SE--------------A---------------------TGSTNG------------G---QVLGSGSRDKTIKIWDVS  322 (406)
T ss_pred             --hh--------------c---------------------cCCCCC------------c---cEEEeecccceEEEEecc
Confidence              00              0                     000000            0   012345678999999999


Q ss_pred             CCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEc
Q 002446          399 SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS  478 (921)
Q Consensus       399 s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFS  478 (921)
                      ++.++-++.+|..-|..++|+|-|+||+++.+|++ +||||+...              +++.++. . +...|+++.|.
T Consensus       323 tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~--------------~cmk~~~-a-h~hfvt~lDfh  385 (406)
T KOG0295|consen  323 TGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNL--------------QCMKTLE-A-HEHFVTSLDFH  385 (406)
T ss_pred             CCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccc--------------eeeeccC-C-CcceeEEEecC
Confidence            99999999999999999999999999999999998 899999975              5666654 2 33459999999


Q ss_pred             cCCCEEEEEeCCCcEEEEec
Q 002446          479 DDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       479 PDg~~LAsgS~DgTVhVWdi  498 (921)
                      .+.-|+.+|+-|.|++||.-
T Consensus       386 ~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  386 KTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCCceEEeccccceeeeeec
Confidence            99999999999999999963

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.79  E-value=6.8e-17  Score=199.36  Aligned_cols=235  Identities=14%  Similarity=0.196  Sum_probs=162.8

Q ss_pred             eEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccc
Q 002446          108 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA  187 (921)
Q Consensus       108 ~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~  187 (921)
                      .++..++++.++|||++. +.....+..|.+.|..+.+.|.             ...+|+.++.          |     
T Consensus       547 ~las~~~Dg~v~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~-------------~~~~L~Sgs~----------D-----  597 (793)
T PLN00181        547 QVASSNFEGVVQVWDVAR-SQLVTEMKEHEKRVWSIDYSSA-------------DPTLLASGSD----------D-----  597 (793)
T ss_pred             EEEEEeCCCeEEEEECCC-CeEEEEecCCCCCEEEEEEcCC-------------CCCEEEEEcC----------C-----
Confidence            455566677799999987 4455566779999999999752             1135554432          2     


Q ss_pred             cCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEc---CCEEEE-EeCCEEEEEECCCCc-EEEEEec
Q 002446          188 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLE-IEYAILT  262 (921)
Q Consensus       188 ~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S---~riLAV-a~d~~I~IwDl~T~~-~l~tL~t  262 (921)
                                        ++|++||+++++.+.++.....|..+.|+   +++||+ +.++.|++||+.+.+ .+.++..
T Consensus       598 ------------------g~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~  659 (793)
T PLN00181        598 ------------------GSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG  659 (793)
T ss_pred             ------------------CEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC
Confidence                              68999999999999999988899999984   567776 678899999998765 2344433


Q ss_pred             CCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEe
Q 002446          263 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN  342 (921)
Q Consensus       263 ~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~  342 (921)
                      |..               ++    .+++|.+                            +                    
T Consensus       660 h~~---------------~V----~~v~f~~----------------------------~--------------------  672 (793)
T PLN00181        660 HSK---------------TV----SYVRFVD----------------------------S--------------------  672 (793)
T ss_pred             CCC---------------CE----EEEEEeC----------------------------C--------------------
Confidence            311               11    1222210                            0                    


Q ss_pred             cCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCC------CceEEEeccCCCCeEEE
Q 002446          343 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS------KNVIAQFRAHKSPISAL  416 (921)
Q Consensus       343 lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s------~~~l~~~~aH~~pIsaL  416 (921)
                                                            ..++++..||+|+|||+..      .+++..|.+|...+.++
T Consensus       673 --------------------------------------~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v  714 (793)
T PLN00181        673 --------------------------------------STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV  714 (793)
T ss_pred             --------------------------------------CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence                                                  0122345678999999974      36788999999999999


Q ss_pred             EECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 002446          417 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF  496 (921)
Q Consensus       417 aFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVW  496 (921)
                      +|+|+|.+||+|+.||+ |+||+........+-...   ....+..+.-..+...|.+++|+||+..|++++.||+|+||
T Consensus       715 ~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~  790 (793)
T PLN00181        715 GLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFK---TIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL  790 (793)
T ss_pred             EEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecc---cCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence            99999999999999997 899997653000000000   00000000001122349999999999999999999999999


Q ss_pred             ec
Q 002446          497 AI  498 (921)
Q Consensus       497 di  498 (921)
                      ++
T Consensus       791 ~~  792 (793)
T PLN00181        791 EM  792 (793)
T ss_pred             ec
Confidence            96

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.79  E-value=4.7e-17  Score=181.05  Aligned_cols=282  Identities=17%  Similarity=0.290  Sum_probs=198.7

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEEccCcE-EEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGYRSGF-QVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~Gf-qVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      ..-+|+.+.|+.   +|    .+|+.|.-+|+ +||+.+  |+....+..|.|||..++.-.+              ..+
T Consensus       234 ~nkdVT~L~Wn~---~G----~~LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~--------------G~y  290 (524)
T KOG0273|consen  234 SNKDVTSLDWNN---DG----TLLATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKK--------------GTY  290 (524)
T ss_pred             ccCCcceEEecC---CC----CeEEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCC--------------CCE
Confidence            345599999998   77    79999998885 999997  4677778899999999988532              123


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCE-EEEEEc-C-CEEEEEe
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPI-YSVRCS-S-RVVAICQ  242 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V-~sV~~S-~-riLAVa~  242 (921)
                      |+..+                                 .++++-+||..+|+..+.+.|.+.. .+|.+- . .++....
T Consensus       291 ilS~~---------------------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~t  337 (524)
T KOG0273|consen  291 ILSGG---------------------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSST  337 (524)
T ss_pred             EEecc---------------------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCC
Confidence            32211                                 1267889999999999999997766 889984 3 4444467


Q ss_pred             CCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecC--ceEEecCCC--ceecCCCccCCcccccccccccc
Q 002446          243 AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGF  318 (921)
Q Consensus       243 d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgp--RwLAyas~~--~~~s~~GrvsPq~l~~s~~~~~~  318 (921)
                      ++.|++|-+..-++..++..|.++.            +.+-..|  ..||.++++  +.+|+.+.--..|          
T Consensus       338 d~~i~V~kv~~~~P~~t~~GH~g~V------------~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~----------  395 (524)
T KOG0273|consen  338 DGCIHVCKVGEDRPVKTFIGHHGEV------------NALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH----------  395 (524)
T ss_pred             CceEEEEEecCCCcceeeecccCce------------EEEEECCCCceEEEecCCCeeEeeecCCCcchh----------
Confidence            8899999998888888888875431            2232232  456666544  4445432210000          


Q ss_pred             cCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECC
Q 002446          319 ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV  398 (921)
Q Consensus       319 ~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~  398 (921)
                          .+-+     -.|++                 |.....|++...   .++      ..+..++++..+++|++||+.
T Consensus       396 ----~l~~-----Hskei-----------------~t~~wsp~g~v~---~n~------~~~~~l~sas~dstV~lwdv~  440 (524)
T KOG0273|consen  396 ----DLQA-----HSKEI-----------------YTIKWSPTGPVT---SNP------NMNLMLASASFDSTVKLWDVE  440 (524)
T ss_pred             ----hhhh-----hccce-----------------eeEeecCCCCcc---CCC------cCCceEEEeecCCeEEEEEcc
Confidence                0000     01111                 111222332110   011      112345677889999999999


Q ss_pred             CCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEc
Q 002446          399 SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS  478 (921)
Q Consensus       399 s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFS  478 (921)
                      .+.+++.|..|+.||.+|+|||+|++||+++.||. |+||++.++               .+|+-.+|.  .-|..++|+
T Consensus       441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~-V~iws~~~~---------------~l~~s~~~~--~~Ifel~Wn  502 (524)
T KOG0273|consen  441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC-VHIWSTKTG---------------KLVKSYQGT--GGIFELCWN  502 (524)
T ss_pred             CCceeEeeccCCCceEEEEecCCCcEEEecCCCCe-eEeccccch---------------heeEeecCC--CeEEEEEEc
Confidence            99999999999999999999999999999999996 999999986               344444553  239999999


Q ss_pred             cCCCEEEEEeCCCcEEEEecC
Q 002446          479 DDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       479 PDg~~LAsgS~DgTVhVWdi~  499 (921)
                      -+|.+|+.+-.|+.+.|-|+.
T Consensus       503 ~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  503 AAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCCCEEEEEecCCCceEEEec
Confidence            999999999999999998874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.78  E-value=1.1e-16  Score=169.84  Aligned_cols=260  Identities=13%  Similarity=0.160  Sum_probs=188.8

Q ss_pred             CCCCCCCcEEEEEEecccCCCCCCCeEEEEEccC-cEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCcccc
Q 002446           83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~-GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~  161 (921)
                      ..-+|-.+|....|-.   |.    +.|+.+..+ .+-|||.-+..+++ .+.-+-..|-.+++.|.             
T Consensus        50 ~LkGH~~Ki~~~~ws~---Ds----r~ivSaSqDGklIvWDs~TtnK~h-aipl~s~WVMtCA~sPS-------------  108 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWST---DS----RRIVSASQDGKLIVWDSFTTNKVH-AIPLPSSWVMTCAYSPS-------------  108 (343)
T ss_pred             EecccccceeeeEecC---Cc----CeEEeeccCCeEEEEEccccccee-EEecCceeEEEEEECCC-------------
Confidence            3457888999988877   54    455555544 57999999866554 44445566888888874             


Q ss_pred             CCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCC--c----EEEEEe-CCCCEEEEEEc
Q 002446          162 VRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ--S----YVHMLK-FRSPIYSVRCS  234 (921)
Q Consensus       162 ~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg--~----~V~tL~-f~s~V~sV~~S  234 (921)
                       ..++|+.+-                                 ++...||++.+.  +    ..++|. +.+-+...+|-
T Consensus       109 -g~~VAcGGL---------------------------------dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~  154 (343)
T KOG0286|consen  109 -GNFVACGGL---------------------------------DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL  154 (343)
T ss_pred             -CCeEEecCc---------------------------------CceeEEEecccccccccceeeeeecCccceeEEEEEc
Confidence             244543221                                 156778999866  2    333443 35567777773


Q ss_pred             --CCEEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccc
Q 002446          235 --SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQS  312 (921)
Q Consensus       235 --~riLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s  312 (921)
                        .++|..+.|.+..+||+++++.+..+.+|..              ..++|     +.+             |.     
T Consensus       155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~g--------------DV~sl-----sl~-------------p~-----  197 (343)
T KOG0286|consen  155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHTG--------------DVMSL-----SLS-------------PS-----  197 (343)
T ss_pred             CCCceEecCCCceEEEEEcccceEEEEecCCcc--------------cEEEE-----ecC-------------CC-----
Confidence              5677778899999999999999888876621              11221     111             10     


Q ss_pred             cccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEE
Q 002446          313 RSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMV  392 (921)
Q Consensus       313 ~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V  392 (921)
                              +                                                          ..+|+++..|+..
T Consensus       198 --------~----------------------------------------------------------~ntFvSg~cD~~a  211 (343)
T KOG0286|consen  198 --------D----------------------------------------------------------GNTFVSGGCDKSA  211 (343)
T ss_pred             --------C----------------------------------------------------------CCeEEecccccce
Confidence                    0                                                          0135566778999


Q ss_pred             EEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccE
Q 002446          393 IVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVI  472 (921)
Q Consensus       393 ~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I  472 (921)
                      +|||+..+.++++|.+|.+-|++|+|-|+|.-+||+|+|++ .|+||+...              +.+..+..-.....|
T Consensus       212 klWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD--------------~~~a~ys~~~~~~gi  276 (343)
T KOG0286|consen  212 KLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRAD--------------QELAVYSHDSIICGI  276 (343)
T ss_pred             eeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCC--------------cEEeeeccCcccCCc
Confidence            99999999999999999999999999999999999999998 899999975              222222222222349


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          473 QDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       473 ~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      ++++||.-|++|.+|..|.+++|||.-.....-.+.+|.+.+.
T Consensus       277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvS  319 (343)
T KOG0286|consen  277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVS  319 (343)
T ss_pred             eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeE
Confidence            9999999999999999999999999988766667889976655

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.78  E-value=5.2e-17  Score=171.56  Aligned_cols=253  Identities=15%  Similarity=0.251  Sum_probs=176.6

Q ss_pred             CCCCCCCcEEEEEEecccCCCCCCCeEEEEE-ccCcEEEEEccCC----CCeEEeeeeecCCEEEEEEecCCCCCccccC
Q 002446           83 DDESSHDQVLWAGFDKLESEAGATRRVLLLG-YRSGFQVWDVEEA----DNVHDLVSRYDGPVSFMQMLPRPITSKRSRD  157 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG-~~~GfqVWDv~~~----~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d  157 (921)
                      -.++|+|.|.-.+...   .+   +..|+.+ .+..+-+|++...    |.+.+.+..|.-.|.-+.+.+          
T Consensus        10 tl~gh~d~Vt~la~~~---~~---~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~----------   73 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKI---KN---SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS----------   73 (315)
T ss_pred             eecCCCceEEEEEeec---CC---CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc----------
Confidence            3568999999999887   33   2444444 4667899999763    122333333443444443333          


Q ss_pred             ccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEcC-
Q 002446          158 KFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS-  235 (921)
Q Consensus       158 ~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~-  235 (921)
                                   +|..+.+                        ...++++|+||+.+|+..+.|.. ..-|.+|+|++ 
T Consensus        74 -------------dg~~alS------------------------~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d  116 (315)
T KOG0279|consen   74 -------------DGNFALS------------------------ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD  116 (315)
T ss_pred             -------------CCceEEe------------------------ccccceEEEEEecCCcEEEEEEecCCceEEEEecCC
Confidence                         2211100                        11448999999999988887764 56899999974 


Q ss_pred             --CEEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccccc
Q 002446          236 --RVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSR  313 (921)
Q Consensus       236 --riLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~  313 (921)
                        +++..+-|++|.+||..+ ++.+++.....                    ..|+-.-          |++|...    
T Consensus       117 n~qivSGSrDkTiklwnt~g-~ck~t~~~~~~--------------------~~WVscv----------rfsP~~~----  161 (315)
T KOG0279|consen  117 NRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSH--------------------REWVSCV----------RFSPNES----  161 (315)
T ss_pred             CceeecCCCcceeeeeeecc-cEEEEEecCCC--------------------cCcEEEE----------EEcCCCC----
Confidence              555558899999999875 45666643210                    0111100          0011100    


Q ss_pred             ccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEE
Q 002446          314 SFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVI  393 (921)
Q Consensus       314 ~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~  393 (921)
                                                                                        +..+++++.|++|+
T Consensus       162 ------------------------------------------------------------------~p~Ivs~s~DktvK  175 (315)
T KOG0279|consen  162 ------------------------------------------------------------------NPIIVSASWDKTVK  175 (315)
T ss_pred             ------------------------------------------------------------------CcEEEEccCCceEE
Confidence                                                                              01234567789999


Q ss_pred             EEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEE
Q 002446          394 VRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ  473 (921)
Q Consensus       394 IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~  473 (921)
                      |||+.+.+....|.+|++.++.++|||||.++|+|+.||. +.+||+..+              +++|.|.-   ...|.
T Consensus       176 vWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~--------------k~lysl~a---~~~v~  237 (315)
T KOG0279|consen  176 VWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEG--------------KNLYSLEA---FDIVN  237 (315)
T ss_pred             EEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCC--------------ceeEeccC---CCeEe
Confidence            9999999999999999999999999999999999999997 899999986              67888842   24599


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 002446          474 DISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ  508 (921)
Q Consensus       474 sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~  508 (921)
                      +++|+|+-.||+.+... .|+|||+.+......++
T Consensus       238 sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~  271 (315)
T KOG0279|consen  238 SLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELK  271 (315)
T ss_pred             eEEecCCceeEeeccCC-ceEEEeccchhhhhhcc
Confidence            99999999999888755 49999999876665554

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.77  E-value=1e-16  Score=186.20  Aligned_cols=251  Identities=18%  Similarity=0.258  Sum_probs=185.6

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEE-ccCcEEEEEccCCC-CeEEeeeeecCCEEEEEEecCCCCCccccCccccCCC
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLG-YRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRP  164 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG-~~~GfqVWDv~~~~-~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rP  164 (921)
                      ++.-|..+.|-.   ++    +.|+.+ .+.-+.+|+..... +....+..|+-.|+.+++.|++              .
T Consensus       158 ~~~sv~~~~fs~---~g----~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~--------------~  216 (456)
T KOG0266|consen  158 ECPSVTCVDFSP---DG----RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG--------------S  216 (456)
T ss_pred             ccCceEEEEEcC---CC----CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC--------------c
Confidence            366788888877   66    345555 56668999996643 1333347789999999998852              1


Q ss_pred             EEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEEC-CCCcEEEEEe-CCCCEEEEEEc--CCEEEE
Q 002446          165 LLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSL-RSQSYVHMLK-FRSPIYSVRCS--SRVVAI  240 (921)
Q Consensus       165 LLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL-~Tg~~V~tL~-f~s~V~sV~~S--~riLAV  240 (921)
                      +|+-+..                                 +.+||+||+ ..+.++++|+ +...|+++.|+  +++|+.
T Consensus       217 ~l~s~s~---------------------------------D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~S  263 (456)
T KOG0266|consen  217 YLLSGSD---------------------------------DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVS  263 (456)
T ss_pred             EEEEecC---------------------------------CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEE
Confidence            3322221                                 278999999 5558999997 46799999997  456665


Q ss_pred             -EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccccccccccc
Q 002446          241 -CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFA  319 (921)
Q Consensus       241 -a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~  319 (921)
                       +.|++|+|||+.+++++.++.+|...               |.    -++|..             +            
T Consensus       264 gs~D~tvriWd~~~~~~~~~l~~hs~~---------------is----~~~f~~-------------d------------  299 (456)
T KOG0266|consen  264 GSDDGTVRIWDVRTGECVRKLKGHSDG---------------IS----GLAFSP-------------D------------  299 (456)
T ss_pred             ecCCCcEEEEeccCCeEEEeeeccCCc---------------eE----EEEECC-------------C------------
Confidence             78999999999999999999887431               11    123321             0            


Q ss_pred             CCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCC
Q 002446          320 SNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS  399 (921)
Q Consensus       320 s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s  399 (921)
                        |.                                                          .++++..+|.|+|||+.+
T Consensus       300 --~~----------------------------------------------------------~l~s~s~d~~i~vwd~~~  319 (456)
T KOG0266|consen  300 --GN----------------------------------------------------------LLVSASYDGTIRVWDLET  319 (456)
T ss_pred             --CC----------------------------------------------------------EEEEcCCCccEEEEECCC
Confidence              10                                                          112235589999999999


Q ss_pred             Cc--eEEEeccCCCC--eEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccc--cEE
Q 002446          400 KN--VIAQFRAHKSP--ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA--VIQ  473 (921)
Q Consensus       400 ~~--~l~~~~aH~~p--IsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a--~I~  473 (921)
                      +.  ++..+..+..+  +++++|+|+|++|+++..|++ +++||+..+              ..+ ...+++...  .+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~--------------~~~-~~~~~~~~~~~~~~  383 (456)
T KOG0266|consen  320 GSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSG--------------KSV-GTYTGHSNLVRCIF  383 (456)
T ss_pred             CceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCC--------------cce-eeecccCCcceeEe
Confidence            99  67888888766  999999999999999999987 999999875              111 122344443  466


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCC
Q 002446          474 DISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD  511 (921)
Q Consensus       474 sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~  511 (921)
                      +..++++++|+.+|+.|++|++|++.+......+.+|.
T Consensus       384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~  421 (456)
T KOG0266|consen  384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS  421 (456)
T ss_pred             cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC
Confidence            77779999999999999999999999987778888983

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.77  E-value=3.4e-17  Score=174.30  Aligned_cols=271  Identities=13%  Similarity=0.141  Sum_probs=192.0

Q ss_pred             hhccccccCCCCCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCc
Q 002446           74 SVASSIVERDDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSK  153 (921)
Q Consensus        74 ~~~~s~~~~~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~  153 (921)
                      ++.+.+-  ...+|+..|.-+.|++   +|.   .++..|++..+-+|++..--+-.-.+..|.|.|--+.+.++     
T Consensus        35 ~l~ap~m--~l~gh~geI~~~~F~P---~gs---~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d-----  101 (338)
T KOG0265|consen   35 SLQAPIM--LLPGHKGEIYTIKFHP---DGS---CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD-----  101 (338)
T ss_pred             cccchhh--hcCCCcceEEEEEECC---CCC---eEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-----
Confidence            3444443  3568999999999999   662   45556678889999976422222346688899988887653     


Q ss_pred             cccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEE-EEE
Q 002446          154 RSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIY-SVR  232 (921)
Q Consensus       154 ~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~-sV~  232 (921)
                               ...|..|+.          |                       ++|+.||.++|++++.++....+. ++.
T Consensus       102 ---------~s~i~S~gt----------D-----------------------k~v~~wD~~tG~~~rk~k~h~~~vNs~~  139 (338)
T KOG0265|consen  102 ---------GSHILSCGT----------D-----------------------KTVRGWDAETGKRIRKHKGHTSFVNSLD  139 (338)
T ss_pred             ---------CCEEEEecC----------C-----------------------ceEEEEecccceeeehhccccceeeecC
Confidence                     133444432          2                       789999999999999888765444 443


Q ss_pred             Ec---CCEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcc
Q 002446          233 CS---SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQH  308 (921)
Q Consensus       233 ~S---~riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~  308 (921)
                      -+   ..+|.. +.|+++++||+++.+++++++..     ++          -.|+     ++..               
T Consensus       140 p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k-----yq----------ltAv-----~f~d---------------  184 (338)
T KOG0265|consen  140 PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK-----YQ----------LTAV-----GFKD---------------  184 (338)
T ss_pred             ccccCCeEEEecCCCceEEEEeecccchhhccccc-----ee----------EEEE-----Eecc---------------
Confidence            33   345555 56789999999987776665321     10          0111     1110               


Q ss_pred             cccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCC
Q 002446          309 LMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADN  388 (921)
Q Consensus       309 l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~  388 (921)
                                             .           ++.                                    ..++.-
T Consensus       185 -----------------------~-----------s~q------------------------------------v~sggI  194 (338)
T KOG0265|consen  185 -----------------------T-----------SDQ------------------------------------VISGGI  194 (338)
T ss_pred             -----------------------c-----------ccc------------------------------------eeeccc
Confidence                                   0           000                                    012334


Q ss_pred             CCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          389 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       389 ~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      ++.|++||+..+..+.++++|..+|+.|..+|+|.+|.+-+-|.+ +++||+.+..+          ..+++..+.-+.+
T Consensus       195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p----------~~R~v~if~g~~h  263 (338)
T KOG0265|consen  195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAP----------SQRCVKIFQGHIH  263 (338)
T ss_pred             cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCC----------CCceEEEeecchh
Confidence            678999999999999999999999999999999999999999976 89999998521          1244444432222


Q ss_pred             ccc--EEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          469 NAV--IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       469 ~a~--I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      .-.  ...++|||+++++..||.|..++|||....+-...+-+|.+.++
T Consensus       264 nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn  312 (338)
T KOG0265|consen  264 NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVN  312 (338)
T ss_pred             hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEE
Confidence            211  56789999999999999999999999988777788899977666

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.77  E-value=5e-17  Score=180.83  Aligned_cols=198  Identities=18%  Similarity=0.304  Sum_probs=142.0

Q ss_pred             cEEEEEECCCCcEEEEEeC-CCCEEEEEEcC--CEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccc
Q 002446          206 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP  281 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~--riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~p  281 (921)
                      +.+|+|+. +|.++.+|.+ +.+|.++++++  .+|+. ..|+++.+||..+++..+.+.-|..+               
T Consensus       257 G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~---------------  320 (524)
T KOG0273|consen  257 GEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP---------------  320 (524)
T ss_pred             cEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC---------------
Confidence            78999997 5677777765 78999999984  45555 78999999999999887766544210               


Q ss_pred             eeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCC
Q 002446          282 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD  361 (921)
Q Consensus       282 iAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~  361 (921)
                       ++.-.|.                                                      ++.               
T Consensus       321 -~lDVdW~------------------------------------------------------~~~---------------  330 (524)
T KOG0273|consen  321 -ALDVDWQ------------------------------------------------------SND---------------  330 (524)
T ss_pred             -ccceEEe------------------------------------------------------cCc---------------
Confidence             1100111                                                      110               


Q ss_pred             CcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCC
Q 002446          362 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII  441 (921)
Q Consensus       362 ~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~  441 (921)
                                          .|++...+|.|+|+-+...+++.+|.+|.++|.+|.|+|.|.+|+|||+|+| ++||...
T Consensus       331 --------------------~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~~  389 (524)
T KOG0273|consen  331 --------------------EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSMG  389 (524)
T ss_pred             --------------------eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeecC
Confidence                                1233455789999999999999999999999999999999999999999998 8999865


Q ss_pred             CCCC-----CCC---------C--------------ccCCCCceeEEEEEeccc-------ccccEEEEEEccCCCEEEE
Q 002446          442 PGIL-----GTS---------S--------------ACDAGTSYVHLYRLQRGL-------TNAVIQDISFSDDSNWIMI  486 (921)
Q Consensus       442 ~g~~-----~~~---------s--------------~~~~~~~~~~l~~l~RG~-------t~a~I~sIaFSPDg~~LAs  486 (921)
                      ....     +.+         +              +.........+|...+|.       +...|++++|||||+|+|+
T Consensus       390 ~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs  469 (524)
T KOG0273|consen  390 QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS  469 (524)
T ss_pred             CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence            4311     000         0              000011222333333321       3356999999999999999


Q ss_pred             EeCCCcEEEEecCCCCCceeecCC
Q 002446          487 SSSRGTSHLFAINPLGGSVNFQPT  510 (921)
Q Consensus       487 gS~DgTVhVWdi~~~g~~~~l~~H  510 (921)
                      |+.||.||||++..+.-...+++-
T Consensus       470 Gs~dg~V~iws~~~~~l~~s~~~~  493 (524)
T KOG0273|consen  470 GSLDGCVHIWSTKTGKLVKSYQGT  493 (524)
T ss_pred             cCCCCeeEeccccchheeEeecCC
Confidence            999999999999887666666554

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=2e-17  Score=179.50  Aligned_cols=252  Identities=15%  Similarity=0.258  Sum_probs=190.5

Q ss_pred             CCCCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCC
Q 002446           85 ESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVR  163 (921)
Q Consensus        85 ~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~r  163 (921)
                      .+++-+|..+-|-+   +    .-+++++. +..+++||.++ +++.+-+.+|...|-.+.+--              ..
T Consensus       105 ~g~r~~vt~v~~hp---~----~~~v~~as~d~tikv~D~~t-g~~e~~LrGHt~sv~di~~~a--------------~G  162 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHP---S----EALVVSASEDATIKVFDTET-GELERSLRGHTDSVFDISFDA--------------SG  162 (406)
T ss_pred             hccccceeeeeecc---C----ceEEEEecCCceEEEEEccc-hhhhhhhhccccceeEEEEec--------------Cc
Confidence            36788899999977   2    24555554 55699999999 677777888887777776632              23


Q ss_pred             CEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCC-CcEEEEEe-CCCCEEEEEEc--CCEEE
Q 002446          164 PLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRS-QSYVHMLK-FRSPIYSVRCS--SRVVA  239 (921)
Q Consensus       164 PLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~T-g~~V~tL~-f~s~V~sV~~S--~riLA  239 (921)
                      -+||-|+.          |                       -.+++||+.+ .++++++. +...|.+|.|-  +.+|+
T Consensus       163 k~l~tcSs----------D-----------------------l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~il  209 (406)
T KOG0295|consen  163 KYLATCSS----------D-----------------------LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHIL  209 (406)
T ss_pred             cEEEecCC----------c-----------------------cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeee
Confidence            45555542          2                       2389999987 46666654 45688888884  56666


Q ss_pred             E-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccc
Q 002446          240 I-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF  318 (921)
Q Consensus       240 V-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~  318 (921)
                      . +-|++|+.||+.|+-+++++..|+.            .   +    |.++..       ..                 
T Consensus       210 S~srD~tik~We~~tg~cv~t~~~h~e------------w---v----r~v~v~-------~D-----------------  246 (406)
T KOG0295|consen  210 SCSRDNTIKAWECDTGYCVKTFPGHSE------------W---V----RMVRVN-------QD-----------------  246 (406)
T ss_pred             ecccccceeEEecccceeEEeccCchH------------h---E----EEEEec-------CC-----------------
Confidence            6 6789999999999999998876532            0   0    111110       00                 


Q ss_pred             cCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECC
Q 002446          319 ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV  398 (921)
Q Consensus       319 ~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~  398 (921)
                         |.                                                          .+++++.+.+|++|-+.
T Consensus       247 ---Gt----------------------------------------------------------i~As~s~dqtl~vW~~~  265 (406)
T KOG0295|consen  247 ---GT----------------------------------------------------------IIASCSNDQTLRVWVVA  265 (406)
T ss_pred             ---ee----------------------------------------------------------EEEecCCCceEEEEEec
Confidence               00                                                          12344567899999999


Q ss_pred             CCceEEEeccCCCCeEEEEECCC---------------CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          399 SKNVIAQFRAHKSPISALCFDPS---------------GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       399 s~~~l~~~~aH~~pIsaLaFSPd---------------GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      ++++...|+.|..+|-|++|-|.               |.+|+++|.|++ ||+||+.++              .++.+|
T Consensus       266 t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg--------------~cL~tL  330 (406)
T KOG0295|consen  266 TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTG--------------MCLFTL  330 (406)
T ss_pred             cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCC--------------eEEEEE
Confidence            99999999999999999998663               369999999987 999999986              788898


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 002446          464 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA  512 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~  512 (921)
                       -||.+. |.+++|+|-|+||++..+|+|+||||+....+..++..|..
T Consensus       331 -~ghdnw-Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h  377 (406)
T KOG0295|consen  331 -VGHDNW-VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH  377 (406)
T ss_pred             -ecccce-eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc
Confidence             466554 99999999999999999999999999999999888887743

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.76  E-value=6e-16  Score=191.01  Aligned_cols=251  Identities=15%  Similarity=0.161  Sum_probs=170.5

Q ss_pred             CCCCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCC---CCe-E--EeeeeecCCEEEEEEecCCCCCcccc
Q 002446           83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEA---DNV-H--DLVSRYDGPVSFMQMLPRPITSKRSR  156 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~---~~~-~--elvS~~dG~Vr~v~~lP~P~~~~~~~  156 (921)
                      +...|...|..+.|+.   ++.   .++..|.++.++|||++..   +.. .  .+.-.+...|..+.+.|.        
T Consensus       478 ~~~~~~~~V~~i~fs~---dg~---~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--------  543 (793)
T PLN00181        478 DLLNSSNLVCAIGFDR---DGE---FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSY--------  543 (793)
T ss_pred             cccCCCCcEEEEEECC---CCC---EEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccC--------
Confidence            3445888999999998   662   4445555667999998641   000 0  000112344555544331        


Q ss_pred             CccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEc-
Q 002446          157 DKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS-  234 (921)
Q Consensus       157 d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S-  234 (921)
                           ...+||.++.                                 +++|++||+.+++.+..++. ...|++|+|+ 
T Consensus       544 -----~~~~las~~~---------------------------------Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p  585 (793)
T PLN00181        544 -----IKSQVASSNF---------------------------------EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS  585 (793)
T ss_pred             -----CCCEEEEEeC---------------------------------CCeEEEEECCCCeEEEEecCCCCCEEEEEEcC
Confidence                 1234443331                                 27899999999999988864 6789999996 


Q ss_pred             --CCEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccc
Q 002446          235 --SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQ  311 (921)
Q Consensus       235 --~riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~  311 (921)
                        +.+|++ +.|++|++||+.+++++.++..+..               ..     .++|.+.                 
T Consensus       586 ~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~---------------v~-----~v~~~~~-----------------  628 (793)
T PLN00181        586 ADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN---------------IC-----CVQFPSE-----------------  628 (793)
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC---------------eE-----EEEEeCC-----------------
Confidence              356666 6789999999999988777653210               01     1222100                 


Q ss_pred             ccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCE
Q 002446          312 SRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGM  391 (921)
Q Consensus       312 s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~  391 (921)
                               .|.                                                          .++.+..+|.
T Consensus       629 ---------~g~----------------------------------------------------------~latgs~dg~  641 (793)
T PLN00181        629 ---------SGR----------------------------------------------------------SLAFGSADHK  641 (793)
T ss_pred             ---------CCC----------------------------------------------------------EEEEEeCCCe
Confidence                     000                                                          1223456789


Q ss_pred             EEEEECCCCc-eEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccc
Q 002446          392 VIVRDIVSKN-VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA  470 (921)
Q Consensus       392 V~IwDl~s~~-~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a  470 (921)
                      |++||+.+.+ .+..+.+|..+|++++|. ++.+|+|++.||+ |+|||+.....+.        ....+..+ .|+. .
T Consensus       642 I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~--------~~~~l~~~-~gh~-~  709 (793)
T PLN00181        642 VYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGI--------NETPLHSF-MGHT-N  709 (793)
T ss_pred             EEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCcccc--------CCcceEEE-cCCC-C
Confidence            9999998765 577889999999999997 7889999999997 9999997531100        01234444 4554 4


Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          471 VIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       471 ~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      .|.+++|+|++++||+|+.|++|+||+....
T Consensus       710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             CeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            5899999999999999999999999997654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.76  E-value=2.4e-17  Score=192.44  Aligned_cols=116  Identities=13%  Similarity=0.241  Sum_probs=101.9

Q ss_pred             ccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR  462 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~  462 (921)
                      |+++..|++.++|......++..|.+|-+-|.|++|.|+..|+||+|.|.| +|+||+.++              .. .+
T Consensus       508 Fatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G--------------~~-VR  571 (707)
T KOG0263|consen  508 FATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTG--------------NS-VR  571 (707)
T ss_pred             EEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCC--------------cE-EE
Confidence            345577889999999999999999999999999999999999999999977 999999987              22 23


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          463 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       463 l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      +.+||+ +.|.+|+|||+|+|||+|+.||.|+|||+..+.....+.+|++.+.
T Consensus       572 iF~GH~-~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~  623 (707)
T KOG0263|consen  572 IFTGHK-GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIY  623 (707)
T ss_pred             EecCCC-CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCcee
Confidence            447865 5699999999999999999999999999998877788999976665

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.75  E-value=1.8e-16  Score=184.28  Aligned_cols=190  Identities=19%  Similarity=0.309  Sum_probs=150.0

Q ss_pred             cEEEEEECCCCc--EEEEE-eCCCCEEEEEEc--CCEEEE-EeCCEEEEEEC-CCCcEEEEEecCCCccCCCCCCCCCcc
Q 002446          206 TVVHFYSLRSQS--YVHML-KFRSPIYSVRCS--SRVVAI-CQAAQVHCFDA-ATLEIEYAILTNPIVMGHPSAGGIGIG  278 (921)
Q Consensus       206 ~tVrIWDL~Tg~--~V~tL-~f~s~V~sV~~S--~riLAV-a~d~~I~IwDl-~T~~~l~tL~t~p~~~g~p~~~g~~i~  278 (921)
                      +++++|++.+.+  +.+++ .+...|..++|+  +++|+. +.|.+|+|||+ ..+.+++++.+|....           
T Consensus       181 ~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v-----------  249 (456)
T KOG0266|consen  181 GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYV-----------  249 (456)
T ss_pred             CcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCce-----------
Confidence            789999997777  66666 456789999996  466666 67889999999 5568889998885421           


Q ss_pred             ccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccc
Q 002446          279 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF  358 (921)
Q Consensus       279 ~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~  358 (921)
                         .     -++|.             |+              |.                                   
T Consensus       250 ---~-----~~~f~-------------p~--------------g~-----------------------------------  259 (456)
T KOG0266|consen  250 ---T-----SVAFS-------------PD--------------GN-----------------------------------  259 (456)
T ss_pred             ---E-----EEEec-------------CC--------------CC-----------------------------------
Confidence               1     12333             11              00                                   


Q ss_pred             cCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEE
Q 002446          359 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF  438 (921)
Q Consensus       359 ~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIW  438 (921)
                                             .++++..|++|+|||+.+++++..|++|.++|++++|++||.+|++++.||. |+||
T Consensus       260 -----------------------~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~-i~vw  315 (456)
T KOG0266|consen  260 -----------------------LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT-IRVW  315 (456)
T ss_pred             -----------------------EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc-EEEE
Confidence                                   1234567899999999999999999999999999999999999999999987 9999


Q ss_pred             eCCCCCCCCCCccCCCCceeEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCC
Q 002446          439 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNA-VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN  513 (921)
Q Consensus       439 di~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a-~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~  513 (921)
                      |+.++            ...++..+.. .... .+.+++|+|++++|++++.|+++++|++........+.+|...
T Consensus       316 d~~~~------------~~~~~~~~~~-~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~  378 (456)
T KOG0266|consen  316 DLETG------------SKLCLKLLSG-AENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL  378 (456)
T ss_pred             ECCCC------------ceeeeecccC-CCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc
Confidence            99986            1112344433 3333 6899999999999999999999999999998888888988554

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.73  E-value=4.7e-17  Score=169.57  Aligned_cols=199  Identities=20%  Similarity=0.322  Sum_probs=154.8

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      .||--|.-+.|++   |.   ..+|.-|.+.-+||||++......+-++.|.|.||.+.++-.             ..-+
T Consensus        98 ~hkhivk~~af~~---ds---~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e-------------D~~i  158 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQ---DS---NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE-------------DKCI  158 (334)
T ss_pred             hhhheeeeEEecc---cc---hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc-------------CceE
Confidence            5788999999999   65   244444445567999999877666778899999999988731             1123


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeC
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQA  243 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVa~d  243 (921)
                      |.. .                                 ..++||+||.+||..+++|.|+++|.++.++  +++|.++..
T Consensus       159 LSS-a---------------------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g  204 (334)
T KOG0278|consen  159 LSS-A---------------------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG  204 (334)
T ss_pred             Eee-c---------------------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC
Confidence            321 1                                 1278999999999999999999999999996  799999999


Q ss_pred             CEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCc
Q 002446          244 AQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS  323 (921)
Q Consensus       244 ~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~  323 (921)
                      ..|..||+.++..+...+--     |          + +       ..++          +.|.                
T Consensus       205 ssV~Fwdaksf~~lKs~k~P-----~----------n-V-------~SAS----------L~P~----------------  235 (334)
T KOG0278|consen  205 SSVKFWDAKSFGLLKSYKMP-----C----------N-V-------ESAS----------LHPK----------------  235 (334)
T ss_pred             ceeEEeccccccceeeccCc-----c----------c-c-------cccc----------ccCC----------------
Confidence            99999999999887665421     1          0 0       0010          0111                


Q ss_pred             ceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceE
Q 002446          324 RVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI  403 (921)
Q Consensus       324 ~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l  403 (921)
                                                            .                  ..++.++.++.++.||..++..+
T Consensus       236 --------------------------------------k------------------~~fVaGged~~~~kfDy~TgeEi  259 (334)
T KOG0278|consen  236 --------------------------------------K------------------EFFVAGGEDFKVYKFDYNTGEEI  259 (334)
T ss_pred             --------------------------------------C------------------ceEEecCcceEEEEEeccCCcee
Confidence                                                  0                  12345677899999999999998


Q ss_pred             EEe-ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCC
Q 002446          404 AQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       404 ~~~-~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g  443 (921)
                      ..+ ++|-+||-||.|+|||.+.|++|.||+ ||||.+.++
T Consensus       260 ~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~~  299 (334)
T KOG0278|consen  260 GSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTPG  299 (334)
T ss_pred             eecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecCC
Confidence            886 899999999999999999999999998 999999876

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.72  E-value=1.2e-17  Score=179.90  Aligned_cols=231  Identities=16%  Similarity=0.274  Sum_probs=169.2

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      ..+.|.++-+|.         ..++.|. ++.++|||.++. .+..++..|.|.|-|+++-.               |  
T Consensus       196 ~skgVYClQYDD---------~kiVSGlrDnTikiWD~n~~-~c~~~L~GHtGSVLCLqyd~---------------r--  248 (499)
T KOG0281|consen  196 NSKGVYCLQYDD---------EKIVSGLRDNTIKIWDKNSL-ECLKILTGHTGSVLCLQYDE---------------R--  248 (499)
T ss_pred             cCCceEEEEecc---------hhhhcccccCceEEeccccH-HHHHhhhcCCCcEEeeeccc---------------e--
Confidence            456688877765         3556666 778999999984 57778899999999998742               2  


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeC
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQA  243 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~riLAV-a~d  243 (921)
                       ++++++                               ++.||++||..||++++++-+ -..|.-++|+..+++. +-|
T Consensus       249 -viisGS-------------------------------SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkD  296 (499)
T KOG0281|consen  249 -VIVSGS-------------------------------SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKD  296 (499)
T ss_pred             -EEEecC-------------------------------CCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCC
Confidence             234432                               127899999999999998865 5689999999877777 667


Q ss_pred             CEEEEEECCCCcEE---EEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccC
Q 002446          244 AQVHCFDAATLEIE---YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS  320 (921)
Q Consensus       244 ~~I~IwDl~T~~~l---~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s  320 (921)
                      ..|.+||+.....+   +.|.+|-            ..+|.+.       |.                            
T Consensus       297 rsiaVWdm~sps~it~rrVLvGHr------------AaVNvVd-------fd----------------------------  329 (499)
T KOG0281|consen  297 RSIAVWDMASPTDITLRRVLVGHR------------AAVNVVD-------FD----------------------------  329 (499)
T ss_pred             ceeEEEeccCchHHHHHHHHhhhh------------hheeeec-------cc----------------------------
Confidence            89999998754311   1111110            0000010       00                            


Q ss_pred             CCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC
Q 002446          321 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK  400 (921)
Q Consensus       321 ~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~  400 (921)
                                              +                                   ..++++..|.+|++||+.++
T Consensus       330 ------------------------~-----------------------------------kyIVsASgDRTikvW~~st~  350 (499)
T KOG0281|consen  330 ------------------------D-----------------------------------KYIVSASGDRTIKVWSTSTC  350 (499)
T ss_pred             ------------------------c-----------------------------------ceEEEecCCceEEEEeccce
Confidence                                    0                                   01234556789999999999


Q ss_pred             ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccC
Q 002446          401 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD  480 (921)
Q Consensus       401 ~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPD  480 (921)
                      +.+.++.+|.-.|.|+.+  .|+++++||.|.| ||+||+..|              .++..| .||.. -|.+|-|  |
T Consensus       351 efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G--------------~cLRvL-eGHEe-LvRciRF--d  409 (499)
T KOG0281|consen  351 EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECG--------------ACLRVL-EGHEE-LVRCIRF--D  409 (499)
T ss_pred             eeehhhhcccccceehhc--cCeEEEecCCCce-EEEEecccc--------------HHHHHH-hchHH-hhhheee--c
Confidence            999999999999999877  6899999999987 999999976              344344 35432 3889988  5


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCC
Q 002446          481 SNWIMISSSRGTSHLFAINPLGG  503 (921)
Q Consensus       481 g~~LAsgS~DgTVhVWdi~~~g~  503 (921)
                      .+.+++|.-||+|+|||+...-.
T Consensus       410 ~krIVSGaYDGkikvWdl~aald  432 (499)
T KOG0281|consen  410 NKRIVSGAYDGKIKVWDLQAALD  432 (499)
T ss_pred             CceeeeccccceEEEEecccccC
Confidence            78999999999999999987533

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.72  E-value=5.1e-16  Score=161.98  Aligned_cols=227  Identities=13%  Similarity=0.201  Sum_probs=157.0

Q ss_pred             CcEEEEEECCCCcEEEEEeCC-CCEEEEEEc--CCEEEEEeCCEEEEEECCCCc--EEEEEecCCCccCCCCCCCCCccc
Q 002446          205 PTVVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIGY  279 (921)
Q Consensus       205 ~~tVrIWDL~Tg~~V~tL~f~-s~V~sV~~S--~riLAVa~d~~I~IwDl~T~~--~l~tL~t~p~~~g~p~~~g~~i~~  279 (921)
                      +.|||||-+.||.|..+++++ +.|.+++++  ++.||++..-+|++||+++..  .+.+++.+..              
T Consensus        19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k--------------   84 (311)
T KOG0315|consen   19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK--------------   84 (311)
T ss_pred             cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC--------------
Confidence            389999999999999999995 799999996  688999988999999999875  4666666521              


Q ss_pred             cceee----cCceEEecCCC--ceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCcccccccc
Q 002446          280 GPLAV----GPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ  353 (921)
Q Consensus       280 ~piAl----gpRwLAyas~~--~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~  353 (921)
                      |..++    ..||+..++.+  +.+|..--.+.|                                             +
T Consensus        85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q---------------------------------------------R  119 (311)
T KOG0315|consen   85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ---------------------------------------------R  119 (311)
T ss_pred             ceEEEEEeecCeEEEecCCCceEEEEeccCcccc---------------------------------------------h
Confidence            22333    34888766543  222211000000                                             0


Q ss_pred             ccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEec-cCCCCeEEEEECCCCCEEEEEecCC
Q 002446          354 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQG  432 (921)
Q Consensus       354 y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~-aH~~pIsaLaFSPdGtlLATaS~DG  432 (921)
                      -+.     ....+.....-..     -+++..++..|.|+|||+....+...+- .-..+|.+|...|||++|+.+-..|
T Consensus       120 ~~~-----~~spVn~vvlhpn-----QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG  189 (311)
T KOG0315|consen  120 NYQ-----HNSPVNTVVLHPN-----QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKG  189 (311)
T ss_pred             hcc-----CCCCcceEEecCC-----cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCc
Confidence            000     0000000000000     1356678889999999999886655554 4557999999999999999999999


Q ss_pred             CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC-CCceeecCCC
Q 002446          433 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL-GGSVNFQPTD  511 (921)
Q Consensus       433 t~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~-g~~~~l~~H~  511 (921)
                      + ..+|++..+...        +....+.+++ .+. ..|..+-||||++|||++|.|.|++||.++.+ +....+++|.
T Consensus       190 ~-cyvW~l~~~~~~--------s~l~P~~k~~-ah~-~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~  258 (311)
T KOG0315|consen  190 N-CYVWRLLNHQTA--------SELEPVHKFQ-AHN-GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ  258 (311)
T ss_pred             c-EEEEEccCCCcc--------ccceEhhhee-ccc-ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence            8 799999875111        1223333442 222 23899999999999999999999999999988 6667778884

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=6.5e-15  Score=158.16  Aligned_cols=250  Identities=14%  Similarity=0.249  Sum_probs=170.9

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      ....|..+.|+.   +|    .+|+.+. ++.+||||+.+. .+...+....=+|..+++...               +.
T Consensus        13 ~~~~i~sl~fs~---~G----~~litss~dDsl~LYd~~~g-~~~~ti~skkyG~~~~~Fth~---------------~~   69 (311)
T KOG1446|consen   13 TNGKINSLDFSD---DG----LLLITSSEDDSLRLYDSLSG-KQVKTINSKKYGVDLACFTHH---------------SN   69 (311)
T ss_pred             CCCceeEEEecC---CC----CEEEEecCCCeEEEEEcCCC-ceeeEeecccccccEEEEecC---------------Cc
Confidence            577899999998   77    4666655 558999999995 444444434344555566531               12


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEcC---CEEEEE
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAIC  241 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~---riLAVa  241 (921)
                      -++.+.. .                             .+.+||.-||.+.++++-+.. ...|.+|+.++   .+|..+
T Consensus        70 ~~i~sSt-k-----------------------------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S  119 (311)
T KOG1446|consen   70 TVIHSST-K-----------------------------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSS  119 (311)
T ss_pred             eEEEccC-C-----------------------------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecc
Confidence            2223211 0                             127899999999999999875 57999999985   567779


Q ss_pred             eCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCC
Q 002446          242 QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN  321 (921)
Q Consensus       242 ~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~  321 (921)
                      .|++|++||+++.+|.-.+....               .|+      .||.             |+.|            
T Consensus       120 ~D~tvrLWDlR~~~cqg~l~~~~---------------~pi------~AfD-------------p~GL------------  153 (311)
T KOG1446|consen  120 LDKTVRLWDLRVKKCQGLLNLSG---------------RPI------AAFD-------------PEGL------------  153 (311)
T ss_pred             cCCeEEeeEecCCCCceEEecCC---------------Ccc------eeEC-------------CCCc------------
Confidence            99999999999877655443211               122      2454             2210            


Q ss_pred             CcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCC--
Q 002446          322 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS--  399 (921)
Q Consensus       322 g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s--  399 (921)
                         +                                                         ++.+.....|++||+++  
T Consensus       154 ---i---------------------------------------------------------fA~~~~~~~IkLyD~Rs~d  173 (311)
T KOG1446|consen  154 ---I---------------------------------------------------------FALANGSELIKLYDLRSFD  173 (311)
T ss_pred             ---E---------------------------------------------------------EEEecCCCeEEEEEecccC
Confidence               0                                                         01111123799999886  


Q ss_pred             CceEEEec---cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEE
Q 002446          400 KNVIAQFR---AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS  476 (921)
Q Consensus       400 ~~~l~~~~---aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIa  476 (921)
                      +.+..+|.   +-....+.|.|||||++|+.+...+. +.|.|.-.|            ...+-...++....- -.+.+
T Consensus       174 kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G------------~~~~tfs~~~~~~~~-~~~a~  239 (311)
T KOG1446|consen  174 KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDG------------TVKSTFSGYPNAGNL-PLSAT  239 (311)
T ss_pred             CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCC------------cEeeeEeeccCCCCc-ceeEE
Confidence            34555555   34678999999999999998888775 899999887            233333333322111 25789


Q ss_pred             EccCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 002446          477 FSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP  509 (921)
Q Consensus       477 FSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~  509 (921)
                      |+|||+++.+|+.||+||||+++++.....+++
T Consensus       240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            999999999999999999999988877777776

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.72  E-value=3.9e-16  Score=180.93  Aligned_cols=116  Identities=16%  Similarity=0.234  Sum_probs=105.8

Q ss_pred             cccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY  461 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~  461 (921)
                      .++++..|.+.+||++...+.+.+|.+|+-.|.|+.|+|..++|||||.|+| |+||.+.+.              .++.
T Consensus       477 LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~f--------------SClk  541 (775)
T KOG0319|consen  477 LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTF--------------SCLK  541 (775)
T ss_pred             eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccc--------------eeee
Confidence            3567788999999999999999999999999999999999999999999987 999999986              5677


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCc
Q 002446          462 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF  514 (921)
Q Consensus       462 ~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~  514 (921)
                      +| .||+.+ |..++|-.+++.|.+++.||-++||++.+..+..++..|.+.+
T Consensus       542 T~-eGH~~a-Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Drv  592 (775)
T KOG0319|consen  542 TF-EGHTSA-VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRV  592 (775)
T ss_pred             ee-cCccce-eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcccee
Confidence            87 588766 9999999999999999999999999999999999999996544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.72  E-value=7.4e-16  Score=181.48  Aligned_cols=242  Identities=17%  Similarity=0.217  Sum_probs=184.3

Q ss_pred             CCCCCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccC
Q 002446           84 DESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        84 ~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~  162 (921)
                      ..+|.+.|--+.|..   .+    ..|+.|. +..++|||+.+ +++..++..|.+.|+++.+.+.              
T Consensus       245 l~GH~g~V~~l~~~~---~~----~~lvsgS~D~t~rvWd~~s-g~C~~~l~gh~stv~~~~~~~~--------------  302 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPS---GG----DKLVSGSTDKTERVWDCST-GECTHSLQGHTSSVRCLTIDPF--------------  302 (537)
T ss_pred             ccCCCCCceeEEEec---CC----CEEEEEecCCcEEeEecCC-CcEEEEecCCCceEEEEEccCc--------------
Confidence            678999999888887   22    3666666 88899999888 7888889999999999987642              


Q ss_pred             CCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-CCCCEEEEEEcCCEEEE-
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSSRVVAI-  240 (921)
Q Consensus       163 rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S~riLAV-  240 (921)
                        ++  ++++                               -+++|++|++.++.+++++. +..+|++|.++..+|+. 
T Consensus       303 --~~--~sgs-------------------------------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsg  347 (537)
T KOG0274|consen  303 --LL--VSGS-------------------------------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSG  347 (537)
T ss_pred             --eE--eecc-------------------------------CCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEE
Confidence              11  2221                               13899999999999999999 88999999999766554 


Q ss_pred             EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccC
Q 002446          241 CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS  320 (921)
Q Consensus       241 a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s  320 (921)
                      +++++|.+||+.++++++++..|...               +    .-|++...                          
T Consensus       348 s~d~~v~VW~~~~~~cl~sl~gH~~~---------------V----~sl~~~~~--------------------------  382 (537)
T KOG0274|consen  348 SYDGTVKVWDPRTGKCLKSLSGHTGR---------------V----YSLIVDSE--------------------------  382 (537)
T ss_pred             ecCceEEEEEhhhceeeeeecCCcce---------------E----EEEEecCc--------------------------
Confidence            88999999999999999999876321               1    01111100                          


Q ss_pred             CCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC
Q 002446          321 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK  400 (921)
Q Consensus       321 ~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~  400 (921)
                                   +                                               ...++..|+.|++||+.++
T Consensus       383 -------------~-----------------------------------------------~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  383 -------------N-----------------------------------------------RLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             -------------c-----------------------------------------------eEEeeeeccceEeecCCch
Confidence                         0                                               0112344688999999999


Q ss_pred             -ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEcc
Q 002446          401 -NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD  479 (921)
Q Consensus       401 -~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSP  479 (921)
                       +++.+++.|.+-+..+.  ..+++|++++.||+ |++||+.++              .++..+.-. +...|..+++. 
T Consensus       403 ~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~-Ik~WD~~~~--------------~~~~~~~~~-~~~~v~~l~~~-  463 (537)
T KOG0274|consen  403 RKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGT-IKLWDAEEG--------------ECLRTLEGR-HVGGVSALALG-  463 (537)
T ss_pred             hhhhhhhcCCcccccccc--cccceeEecccccc-EEEeecccC--------------ceeeeeccC-CcccEEEeecC-
Confidence             99999999999886554  46799999999997 999999986              344555322 22348888877 


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          480 DSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       480 Dg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                       ...+++++.||++++||+........+
T Consensus       464 -~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  464 -KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             -cceEEEEecCCeeEEEecccCchhhhh
Confidence             567889999999999999987665554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.71  E-value=4.7e-17  Score=178.53  Aligned_cols=251  Identities=17%  Similarity=0.300  Sum_probs=177.8

Q ss_pred             CCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEE
Q 002446           88 HDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLV  167 (921)
Q Consensus        88 kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLA  167 (921)
                      |-.|.-++|-.   +|   |++|...+.+.|-+|+.... +++.++..||.+||+++++++-               .-+
T Consensus        96 kc~V~~v~WtP---eG---RRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~g---------------~wm  153 (464)
T KOG0284|consen   96 KCPVNVVRWTP---EG---RRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHNG---------------TWM  153 (464)
T ss_pred             ccceeeEEEcC---CC---ceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccCC---------------CEE
Confidence            44555555555   44   66666666667999999763 5666778999999999998741               223


Q ss_pred             EEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-C-CCCEEEEEEcC---CEEEEEe
Q 002446          168 FCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-F-RSPIYSVRCSS---RVVAICQ  242 (921)
Q Consensus       168 vv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f-~s~V~sV~~S~---riLAVa~  242 (921)
                      +.++.                                .++|++|+..-.. |+.++ + ...|+.++|++   +++..+.
T Consensus       154 iSgD~--------------------------------gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~Sd  200 (464)
T KOG0284|consen  154 ISGDK--------------------------------GGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSD  200 (464)
T ss_pred             EEcCC--------------------------------CceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecC
Confidence            33321                                1789999986544 44444 3 37999999983   6777788


Q ss_pred             CCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCC
Q 002446          243 AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNG  322 (921)
Q Consensus       243 d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g  322 (921)
                      |++|+|||....+....|.+|              ++.+     +.++..             |+               
T Consensus       201 Dg~ikiWdf~~~kee~vL~GH--------------gwdV-----ksvdWH-------------P~---------------  233 (464)
T KOG0284|consen  201 DGTIKIWDFRMPKEERVLRGH--------------GWDV-----KSVDWH-------------PT---------------  233 (464)
T ss_pred             CCeEEEEeccCCchhheeccC--------------CCCc-----ceeccC-------------Cc---------------
Confidence            999999999988776666554              1111     111111             11               


Q ss_pred             cceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCce
Q 002446          323 SRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV  402 (921)
Q Consensus       323 ~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~  402 (921)
                                 |                                              +.+++++.|..|++||..++++
T Consensus       234 -----------k----------------------------------------------gLiasgskDnlVKlWDprSg~c  256 (464)
T KOG0284|consen  234 -----------K----------------------------------------------GLIASGSKDNLVKLWDPRSGSC  256 (464)
T ss_pred             -----------c----------------------------------------------ceeEEccCCceeEeecCCCcch
Confidence                       0                                              1123344556899999999999


Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEcc-CC
Q 002446          403 IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DS  481 (921)
Q Consensus       403 l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSP-Dg  481 (921)
                      ++++.+|+..|..+.|+|+|.+|+|+|.|. .+++||+.+-              ..+..+ |||.. .|.+++|+| .-
T Consensus       257 l~tlh~HKntVl~~~f~~n~N~Llt~skD~-~~kv~DiR~m--------------kEl~~~-r~Hkk-dv~~~~WhP~~~  319 (464)
T KOG0284|consen  257 LATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-SCKVFDIRTM--------------KELFTY-RGHKK-DVTSLTWHPLNE  319 (464)
T ss_pred             hhhhhhccceEEEEEEcCCCCeeEEccCCc-eEEEEehhHh--------------HHHHHh-hcchh-hheeeccccccc
Confidence            999999999999999999999999999996 5999999853              233444 66653 499999999 56


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCceee-cCCCCCc
Q 002446          482 NWIMISSSRGTSHLFAINPLGGSVNF-QPTDANF  514 (921)
Q Consensus       482 ~~LAsgS~DgTVhVWdi~~~g~~~~l-~~H~~~~  514 (921)
                      .+|.+|+.||.|..|.+........+ .+|...+
T Consensus       320 ~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~i  353 (464)
T KOG0284|consen  320 SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEI  353 (464)
T ss_pred             cceeeccCCCceEEEeccccccccCCCcccccce
Confidence            78899999999999998743333333 4554333

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.71  E-value=7.1e-17  Score=175.09  Aligned_cols=282  Identities=16%  Similarity=0.226  Sum_probs=185.7

Q ss_pred             hccccccCCCCCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCcc
Q 002446           75 VASSIVERDDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKR  154 (921)
Q Consensus        75 ~~~s~~~~~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~  154 (921)
                      ||-.-+ ...++|+|.|....=++     .-...|+..++++.++|||+.. -++...+..|+|.|+-+.+-..      
T Consensus        54 fakPFv-~~L~gHrdGV~~lakhp-----~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~AH~G~V~Gi~v~~~------  120 (433)
T KOG0268|consen   54 FAKPFV-GSLDGHRDGVSCLAKHP-----NKLSTVASGSCDGEVKIWNLSQ-RECIRTFKAHEGLVRGICVTQT------  120 (433)
T ss_pred             hhccch-hhccccccccchhhcCc-----chhhhhhccccCceEEEEehhh-hhhhheeecccCceeeEEeccc------
Confidence            344433 23478999998876655     1123566667788899999998 4666778889999998877421      


Q ss_pred             ccCccccCCCEEEEEeCCCCcCCccccCC-cccccCCC---CCCcCCCCCCCCCC--cEEEEEECCCCcEEEEEeCC-CC
Q 002446          155 SRDKFAEVRPLLVFCADGSRSCGTKVQDG-LATACNGT---SANYHDLGNGSSVP--TVVHFYSLRSQSYVHMLKFR-SP  227 (921)
Q Consensus       155 ~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg-~~~~~~g~---~~~~h~~g~~~~~~--~tVrIWDL~Tg~~V~tL~f~-s~  227 (921)
                               ..+ .|+++.. .-.-.-+| ....+.|.   .+-.|.-.+..+..  ..|.|||..-...+.+++.. ..
T Consensus       121 ---------~~~-tvgdDKt-vK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dt  189 (433)
T KOG0268|consen  121 ---------SFF-TVGDDKT-VKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADS  189 (433)
T ss_pred             ---------ceE-EecCCcc-eeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCc
Confidence                     112 2222210 00000000 00000000   00011111112222  34899999999999999875 57


Q ss_pred             EEEEEEcC---CEEEEE-eCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCc
Q 002446          228 IYSVRCSS---RVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGR  303 (921)
Q Consensus       228 V~sV~~S~---riLAVa-~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~Gr  303 (921)
                      |.+|+||+   .+|+++ .|+.|.+||+++...++.+...-             -+|.|+.+|  =||            
T Consensus       190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m-------------RTN~IswnP--eaf------------  242 (433)
T KOG0268|consen  190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM-------------RTNTICWNP--EAF------------  242 (433)
T ss_pred             eeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec-------------cccceecCc--ccc------------
Confidence            89999984   788885 88999999999988777654321             122232211  000            


Q ss_pred             cCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcc
Q 002446          304 VNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHF  383 (921)
Q Consensus       304 vsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~  383 (921)
                                                                                                    .|
T Consensus       243 ------------------------------------------------------------------------------nF  244 (433)
T KOG0268|consen  243 ------------------------------------------------------------------------------NF  244 (433)
T ss_pred             ------------------------------------------------------------------------------ce
Confidence                                                                                          12


Q ss_pred             cccCCCCEEEEEECCCC-ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 002446          384 PDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR  462 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~-~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~  462 (921)
                      +.++.|..+..||+... +++...++|.++|..+.|||.|+-+++||.|.+ ||||.+..+            .-+.+|-
T Consensus       245 ~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~------------~SRdiYh  311 (433)
T KOG0268|consen  245 VAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHG------------HSRDIYH  311 (433)
T ss_pred             eeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCC------------cchhhhh
Confidence            33456677888888764 577888999999999999999999999999976 999999875            1133444


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          463 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       463 l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      .+|-   ..|.++.||.|++|+.+||+|+.|++|.-...
T Consensus       312 tkRM---q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  312 TKRM---QHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             Hhhh---heeeEEEEeccccEEEecCCCcceeeeecchh
Confidence            4442   34999999999999999999999999987654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.2e-15  Score=174.02  Aligned_cols=190  Identities=13%  Similarity=0.234  Sum_probs=153.2

Q ss_pred             cEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccc
Q 002446          206 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP  281 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~p  281 (921)
                      +.|.|||..|...|++++. .-||++-+|=  ++.+++ +.|.+|+||+..|+++.++++.|++.-              
T Consensus        35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyI--------------  100 (794)
T KOG0276|consen   35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYI--------------  100 (794)
T ss_pred             CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccce--------------
Confidence            5699999999999999987 5699988884  567777 666799999999999999999986521              


Q ss_pred             eeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCC
Q 002446          282 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD  361 (921)
Q Consensus       282 iAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~  361 (921)
                           |.||..             |+ +                                           .|       
T Consensus       101 -----R~iavH-------------Pt-~-------------------------------------------P~-------  111 (794)
T KOG0276|consen  101 -----RSIAVH-------------PT-L-------------------------------------------PY-------  111 (794)
T ss_pred             -----eeeeec-------------CC-C-------------------------------------------Ce-------
Confidence                 333432             22 0                                           00       


Q ss_pred             CcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC-ceEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEe
Q 002446          362 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFK  439 (921)
Q Consensus       362 ~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~-~~l~~~~aH~~pIsaLaFSP-dGtlLATaS~DGt~IrIWd  439 (921)
                                           +.++..|-+|++||.+.+ .+..+|.+|++-|.+++|+| |-..+|+||-|+| |+||.
T Consensus       112 ---------------------vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT-VKVWs  169 (794)
T KOG0276|consen  112 ---------------------VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT-VKVWS  169 (794)
T ss_pred             ---------------------EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc-EEEEE
Confidence                                 122345678999999876 67889999999999999999 6779999999998 99999


Q ss_pred             CCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCccc
Q 002446          440 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTT  516 (921)
Q Consensus       440 i~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSP--Dg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~~  516 (921)
                      +...              ...++|. ||... |+||.|=+  |-.||.+|++|.|++|||..+..+..++.+|+.++.-
T Consensus       170 lgs~--------------~~nfTl~-gHekG-VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~  232 (794)
T KOG0276|consen  170 LGSP--------------HPNFTLE-GHEKG-VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSF  232 (794)
T ss_pred             cCCC--------------CCceeee-ccccC-cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceE
Confidence            8764              3456775 76654 99999965  5579999999999999999999999999999888763

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.70  E-value=2.2e-15  Score=158.52  Aligned_cols=262  Identities=16%  Similarity=0.186  Sum_probs=173.0

Q ss_pred             CCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCC
Q 002446           85 ESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRP  164 (921)
Q Consensus        85 ~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rP  164 (921)
                      .+|.-.++.++||+   +|+   .++.++-+...-||-..+ |+..-.+..|.|.|.|+.+--.             ++-
T Consensus         7 ~GHERplTqiKyN~---eGD---LlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~-------------s~~   66 (327)
T KOG0643|consen    7 QGHERPLTQIKYNR---EGD---LLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWD-------------SKH   66 (327)
T ss_pred             ccCccccceEEecC---CCc---EEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCC-------------cce
Confidence            46777899999999   774   667777778889999877 5666667789999999987421             111


Q ss_pred             EEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe
Q 002446          165 LLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ  242 (921)
Q Consensus       165 LLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVa~  242 (921)
                      |   +.+.                               .+.+++|||.++|+++.+++++++|..+.|+  +.+++++.
T Consensus        67 l---iTGS-------------------------------AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~t  112 (327)
T KOG0643|consen   67 L---ITGS-------------------------------ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILAST  112 (327)
T ss_pred             e---eecc-------------------------------ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEe
Confidence            2   2221                               1278999999999999999999999999997  56666655


Q ss_pred             C------CEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccc
Q 002446          243 A------AQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFS  316 (921)
Q Consensus       243 d------~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~  316 (921)
                      +      ..|.+||++.....  +..                -.|+      +....            |+         
T Consensus       113 D~~mg~~~~v~~fdi~~~~~~--~~s----------------~ep~------~kI~t------------~~---------  147 (327)
T KOG0643|consen  113 DKQMGYTCFVSVFDIRDDSSD--IDS----------------EEPY------LKIPT------------PD---------  147 (327)
T ss_pred             hhhcCcceEEEEEEccCChhh--hcc----------------cCce------EEecC------------Cc---------
Confidence            4      37888888743210  000                0000      00000            00         


Q ss_pred             cccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEE
Q 002446          317 GFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRD  396 (921)
Q Consensus       317 ~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwD  396 (921)
                                      +|-..+++-.++                                    ..++.+..+|.|.+||
T Consensus       148 ----------------skit~a~Wg~l~------------------------------------~~ii~Ghe~G~is~~d  175 (327)
T KOG0643|consen  148 ----------------SKITSALWGPLG------------------------------------ETIIAGHEDGSISIYD  175 (327)
T ss_pred             ----------------cceeeeeecccC------------------------------------CEEEEecCCCcEEEEE
Confidence                            000000000011                                    1234567889999999


Q ss_pred             CCCC-ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCC---------CCCCCccCC---------CCce
Q 002446          397 IVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI---------LGTSSACDA---------GTSY  457 (921)
Q Consensus       397 l~s~-~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~---------~~~~s~~~~---------~~~~  457 (921)
                      +.++ +.+...+.|.+.|+.|+|+||.++++|+|.|.+ -++||..+-.         +-+..+..+         ....
T Consensus       176 a~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA  254 (327)
T KOG0643|consen  176 ARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEA  254 (327)
T ss_pred             cccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEeeecccccceecccccceEEecCCcee
Confidence            9997 556677899999999999999999999999976 7999987631         101000000         0000


Q ss_pred             eE-----------------------EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          458 VH-----------------------LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       458 ~~-----------------------l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                      ..                       +-++ .||- ..|++|||+|||+-.++|+.||.|+|.....
T Consensus       255 ~dVTTT~~r~GKFEArFyh~i~eEEigrv-kGHF-GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  255 MDVTTTSTRAGKFEARFYHLIFEEEIGRV-KGHF-GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             eeeeeecccccchhhhHHHHHHHHHhccc-cccc-cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            00                       0011 2332 3599999999999999999999999876543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.70  E-value=5.2e-15  Score=157.32  Aligned_cols=235  Identities=14%  Similarity=0.194  Sum_probs=176.5

Q ss_pred             CCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCC--C---CeEEeeeeecCCEEEEEEecCCCCCccccCccccC
Q 002446           88 HDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEA--D---NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        88 kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~--~---~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~  162 (921)
                      .-.|.-+.|-+   .+   .-|-..|.+|-.-||++...  .   .+...+..|.|=++|++|+++-             
T Consensus        97 s~WVMtCA~sP---Sg---~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-------------  157 (343)
T KOG0286|consen   97 SSWVMTCAYSP---SG---NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-------------  157 (343)
T ss_pred             ceeEEEEEECC---CC---CeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-------------
Confidence            45566777776   55   24445556888899999853  2   2344567789999999998641             


Q ss_pred             CCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEcC---CEE
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVV  238 (921)
Q Consensus       163 rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~---riL  238 (921)
                       .||.  +.|         |                       .|.-+||+++|+.+..+.- ..-|.++.+++   +.+
T Consensus       158 -~ilT--~SG---------D-----------------------~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF  202 (343)
T KOG0286|consen  158 -HILT--GSG---------D-----------------------MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF  202 (343)
T ss_pred             -ceEe--cCC---------C-----------------------ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence             2331  111         1                       6789999999999999875 56899999964   555


Q ss_pred             EE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccccccccc
Q 002446          239 AI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSG  317 (921)
Q Consensus       239 AV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~  317 (921)
                      +. +-|+..++||++.+.+.+++.+|..            ..|.+.       |-                         
T Consensus       203 vSg~cD~~aklWD~R~~~c~qtF~ghes------------DINsv~-------ff-------------------------  238 (343)
T KOG0286|consen  203 VSGGCDKSAKLWDVRSGQCVQTFEGHES------------DINSVR-------FF-------------------------  238 (343)
T ss_pred             EecccccceeeeeccCcceeEeeccccc------------ccceEE-------Ec-------------------------
Confidence            55 7789999999999999999887732            122222       11                         


Q ss_pred             ccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEEC
Q 002446          318 FASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDI  397 (921)
Q Consensus       318 ~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl  397 (921)
                                                                |++.                  .|+++..+++.++||+
T Consensus       239 ------------------------------------------P~G~------------------afatGSDD~tcRlyDl  258 (343)
T KOG0286|consen  239 ------------------------------------------PSGD------------------AFATGSDDATCRLYDL  258 (343)
T ss_pred             ------------------------------------------cCCC------------------eeeecCCCceeEEEee
Confidence                                                      1110                  1345677899999999


Q ss_pred             CCCceEEEeccC--CCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEE
Q 002446          398 VSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI  475 (921)
Q Consensus       398 ~s~~~l~~~~aH--~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sI  475 (921)
                      ...+.++.+...  ..+|++++||-+|++|..+-.|.+ ++|||...+              ..+-.| .||. .+|.+|
T Consensus       259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~--------------e~vg~L-~GHe-NRvScl  321 (343)
T KOG0286|consen  259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKG--------------ERVGVL-AGHE-NRVSCL  321 (343)
T ss_pred             cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeecccc--------------ceEEEe-eccC-CeeEEE
Confidence            999999988833  369999999999999999999987 899999986              344455 3654 469999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEe
Q 002446          476 SFSDDSNWIMISSSRGTSHLFA  497 (921)
Q Consensus       476 aFSPDg~~LAsgS~DgTVhVWd  497 (921)
                      ..+|||.-|++||-|.+++||.
T Consensus       322 ~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  322 GVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EECCCCcEEEecchhHheeecC
Confidence            9999999999999999999994

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.69  E-value=1.2e-15  Score=165.30  Aligned_cols=240  Identities=18%  Similarity=0.262  Sum_probs=188.7

Q ss_pred             CCCCCCcEEEEEEecccCCCCCCCeEEEEEccC-cEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccC
Q 002446           84 DESSHDQVLWAGFDKLESEAGATRRVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        84 ~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~-GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~  162 (921)
                      ..+|-..|..+.||.   .+    ..|+.|..+ .++|||+++ +.++-.+-.|-..||-+++++.              
T Consensus       147 i~gHlgWVr~vavdP---~n----~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~r--------------  204 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDP---GN----EWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKR--------------  204 (460)
T ss_pred             hhhccceEEEEeeCC---Cc----eeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeeccc--------------
Confidence            346788899999998   33    788888855 589999998 6787778889999999999864              


Q ss_pred             CCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-CCCCEEEEEEcC--CEEE
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS--RVVA  239 (921)
Q Consensus       163 rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S~--riLA  239 (921)
                      +|+|..|+.+                                 +.|+-|||...+.|+... +-+.|+.++.-+  ++|+
T Consensus       205 HpYlFs~ged---------------------------------k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~  251 (460)
T KOG0285|consen  205 HPYLFSAGED---------------------------------KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLV  251 (460)
T ss_pred             CceEEEecCC---------------------------------CeeEEEechhhhhHHHhccccceeEEEeccccceeEE
Confidence            5888777652                                 679999999999988765 358999999963  5666


Q ss_pred             E-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccc
Q 002446          240 I-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF  318 (921)
Q Consensus       240 V-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~  318 (921)
                      . +.|.+|++||++|...++++.+|.+               +++   +-++-+.                         
T Consensus       252 t~grDst~RvWDiRtr~~V~~l~GH~~---------------~V~---~V~~~~~-------------------------  288 (460)
T KOG0285|consen  252 TGGRDSTIRVWDIRTRASVHVLSGHTN---------------PVA---SVMCQPT-------------------------  288 (460)
T ss_pred             ecCCcceEEEeeecccceEEEecCCCC---------------cce---eEEeecC-------------------------
Confidence            5 6788999999999999999988743               222   0000000                         


Q ss_pred             cCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECC
Q 002446          319 ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV  398 (921)
Q Consensus       319 ~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~  398 (921)
                                                                                   ++.+.++..|++|++||+.
T Consensus       289 -------------------------------------------------------------dpqvit~S~D~tvrlWDl~  307 (460)
T KOG0285|consen  289 -------------------------------------------------------------DPQVITGSHDSTVRLWDLR  307 (460)
T ss_pred             -------------------------------------------------------------CCceEEecCCceEEEeeec
Confidence                                                                         0012345678999999999


Q ss_pred             CCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEc
Q 002446          399 SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS  478 (921)
Q Consensus       399 s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFS  478 (921)
                      .++...++..|+..|.||+.+|.-.++|+||.|  .|+-|++..+              ..+..+ .|+ ++.|.+++..
T Consensus       308 agkt~~tlt~hkksvral~lhP~e~~fASas~d--nik~w~~p~g--------------~f~~nl-sgh-~~iintl~~n  369 (460)
T KOG0285|consen  308 AGKTMITLTHHKKSVRALCLHPKENLFASASPD--NIKQWKLPEG--------------EFLQNL-SGH-NAIINTLSVN  369 (460)
T ss_pred             cCceeEeeecccceeeEEecCCchhhhhccCCc--cceeccCCcc--------------chhhcc-ccc-cceeeeeeec
Confidence            999999999999999999999999999999999  4899999886              223343 344 3569999998


Q ss_pred             cCCCEEEEEeCCCcEEEEecCCC
Q 002446          479 DDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       479 PDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      .|+ ++++|++.|++..||-.++
T Consensus       370 sD~-v~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  370 SDG-VLVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             cCc-eEEEcCCceEEEEEecCcC
Confidence            887 5668999999999999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.69  E-value=1.7e-15  Score=175.78  Aligned_cols=233  Identities=17%  Similarity=0.232  Sum_probs=158.8

Q ss_pred             cEEEEEECCCCcEEEEEe-CCCCEEEEEEcC---CEEEEE-eCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCcccc
Q 002446          206 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS---RVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG  280 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S~---riLAVa-~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~  280 (921)
                      ..+.|||.++.+.++.|- +...|++++|-+   ++|||+ ....+++||+.|+.|. .+.+|....-.       +  .
T Consensus       303 Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlS-------L--~  372 (775)
T KOG0319|consen  303 QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLS-------L--D  372 (775)
T ss_pred             ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheee-------e--e
Confidence            458899999999988774 688999999964   889985 4569999999999876 56666432100       0  0


Q ss_pred             ceeecCceEEecCCC--ceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccc
Q 002446          281 PLAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF  358 (921)
Q Consensus       281 piAlgpRwLAyas~~--~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~  358 (921)
                       ++-+.-|||..+++  +++|-.        ..+         -.....+|.-.           |+.            
T Consensus       373 -~~~~g~llat~sKD~svilWr~--------~~~---------~~~~~~~a~~~-----------gH~------------  411 (775)
T KOG0319|consen  373 -VWSSGDLLATGSKDKSVILWRL--------NNN---------CSKSLCVAQAN-----------GHT------------  411 (775)
T ss_pred             -ecccCcEEEEecCCceEEEEEe--------cCC---------cchhhhhhhhc-----------ccc------------
Confidence             11223477766543  444411        000         00000011000           000            


Q ss_pred             cCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCc-----eEE----EeccCCCCeEEEEECCCCCEEEEEe
Q 002446          359 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-----VIA----QFRAHKSPISALCFDPSGILLVTAS  429 (921)
Q Consensus       359 ~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~-----~l~----~~~aH~~pIsaLaFSPdGtlLATaS  429 (921)
                           +++. +-...+ .+  ..-|++.+.|+++++|++...+     .+.    +..+|...|+|++.+|+.+++||||
T Consensus       412 -----~svg-ava~~~-~~--asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S  482 (775)
T KOG0319|consen  412 -----NSVG-AVAGSK-LG--ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS  482 (775)
T ss_pred             -----cccc-eeeecc-cC--ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence                 0000 000000 00  0134677889999999997621     111    3459999999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 002446          430 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP  509 (921)
Q Consensus       430 ~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~  509 (921)
                      .|.+ .+||++...              .++..| +||+.. |+|+.|||..+.+|++|.|+||+||.|+++.+..+|.|
T Consensus       483 qDkt-aKiW~le~~--------------~l~~vL-sGH~RG-vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG  545 (775)
T KOG0319|consen  483 QDKT-AKIWDLEQL--------------RLLGVL-SGHTRG-VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG  545 (775)
T ss_pred             cccc-eeeecccCc--------------eEEEEe-eCCccc-eEEEEeccccceeEeccCCceEEEEEeccceeeeeecC
Confidence            9987 899999853              566666 577654 99999999999999999999999999999999999999


Q ss_pred             CCCCcc
Q 002446          510 TDANFT  515 (921)
Q Consensus       510 H~~~~~  515 (921)
                      |...+-
T Consensus       546 H~~aVl  551 (775)
T KOG0319|consen  546 HTSAVL  551 (775)
T ss_pred             ccceeE
Confidence            965544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.69  E-value=1.6e-15  Score=178.75  Aligned_cols=230  Identities=14%  Similarity=0.148  Sum_probs=170.8

Q ss_pred             eEEEEEccCcEEEEEccCCCCeEEe-eeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 002446          108 RVLLLGYRSGFQVWDVEEADNVHDL-VSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT  186 (921)
Q Consensus       108 ~vLllG~~~GfqVWDv~~~~~~~el-vS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~  186 (921)
                      .++...++..+++||+.+ +.+... +..|.|.|+.++|..              ..++|..+..          |    
T Consensus       220 ~~~~~s~~~tl~~~~~~~-~~~i~~~l~GH~g~V~~l~~~~--------------~~~~lvsgS~----------D----  270 (537)
T KOG0274|consen  220 FFKSGSDDSTLHLWDLNN-GYLILTRLVGHFGGVWGLAFPS--------------GGDKLVSGST----------D----  270 (537)
T ss_pred             eEEecCCCceeEEeeccc-ceEEEeeccCCCCCceeEEEec--------------CCCEEEEEec----------C----
Confidence            344444455678999998 444444 778999999999852              1134432221          2    


Q ss_pred             ccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEE-EeCCEEEEEECCCCcEEEEEecCC
Q 002446          187 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNP  264 (921)
Q Consensus       187 ~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~riLAV-a~d~~I~IwDl~T~~~l~tL~t~p  264 (921)
                                         .++|+||+.+|+|+++|.. .+.|+.+..-+.+++. +.|.+|++||+.++.+++++..|.
T Consensus       271 -------------------~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~  331 (537)
T KOG0274|consen  271 -------------------KTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHT  331 (537)
T ss_pred             -------------------CcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecccc
Confidence                               7899999999999999994 6777777776655555 689999999999999998887642


Q ss_pred             CccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecC
Q 002446          265 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG  344 (921)
Q Consensus       265 ~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lG  344 (921)
                      .               +|    +-+.+.                             +                      
T Consensus       332 ~---------------~V----~~v~~~-----------------------------~----------------------  341 (537)
T KOG0274|consen  332 G---------------PV----NCVQLD-----------------------------E----------------------  341 (537)
T ss_pred             c---------------cE----EEEEec-----------------------------C----------------------
Confidence            1               11    111111                             0                      


Q ss_pred             CccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCE
Q 002446          345 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGIL  424 (921)
Q Consensus       345 d~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtl  424 (921)
                                                          ..++++..+|+|+|||+.++++++++++|+..|.++.|++. ..
T Consensus       342 ------------------------------------~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~  384 (537)
T KOG0274|consen  342 ------------------------------------PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NR  384 (537)
T ss_pred             ------------------------------------CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ce
Confidence                                                01223466789999999999999999999999999999887 89


Q ss_pred             EEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc
Q 002446          425 LVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS  504 (921)
Q Consensus       425 LATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~  504 (921)
                      +.++|.|++ |++||+.+.             ..+++.| .|++ +.+.++  ...+++|.+++.|++|++||++.++..
T Consensus       385 ~~Sgs~D~~-IkvWdl~~~-------------~~c~~tl-~~h~-~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~  446 (537)
T KOG0274|consen  385 LLSGSLDTT-IKVWDLRTK-------------RKCIHTL-QGHT-SLVSSL--LLRDNFLVSSSADGTIKLWDAEEGECL  446 (537)
T ss_pred             EEeeeeccc-eEeecCCch-------------hhhhhhh-cCCc-cccccc--ccccceeEeccccccEEEeecccCcee
Confidence            999999976 999999874             0345555 3443 335444  456899999999999999999999998


Q ss_pred             eeecCC
Q 002446          505 VNFQPT  510 (921)
Q Consensus       505 ~~l~~H  510 (921)
                      ..+.++
T Consensus       447 ~~~~~~  452 (537)
T KOG0274|consen  447 RTLEGR  452 (537)
T ss_pred             eeeccC
Confidence            888873

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.69  E-value=1e-14  Score=154.34  Aligned_cols=224  Identities=13%  Similarity=0.232  Sum_probs=158.1

Q ss_pred             eEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccc
Q 002446          108 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA  187 (921)
Q Consensus       108 ~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~  187 (921)
                      -.|..+.+..+++||++. ++....+-.|..-|-+++|.|+             .|.+   |+++               
T Consensus        77 ~alS~swD~~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~d-------------n~qi---vSGS---------------  124 (315)
T KOG0279|consen   77 FALSASWDGTLRLWDLAT-GESTRRFVGHTKDVLSVAFSTD-------------NRQI---VSGS---------------  124 (315)
T ss_pred             eEEeccccceEEEEEecC-CcEEEEEEecCCceEEEEecCC-------------Ccee---ecCC---------------
Confidence            555666677799999998 5677777789889999999874             1222   3321               


Q ss_pred             cCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC--CCCEEEEEEcCC----EEEE-EeCCEEEEEECCCCcEEEEE
Q 002446          188 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF--RSPIYSVRCSSR----VVAI-CQAAQVHCFDAATLEIEYAI  260 (921)
Q Consensus       188 ~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f--~s~V~sV~~S~r----iLAV-a~d~~I~IwDl~T~~~l~tL  260 (921)
                                      -++|+++|+...+.......-  +..|..|+|+++    +|+. +.|++|++||+.+.+..+++
T Consensus       125 ----------------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~  188 (315)
T KOG0279|consen  125 ----------------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF  188 (315)
T ss_pred             ----------------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc
Confidence                            228999999987765555544  679999999754    4444 67899999999999877766


Q ss_pred             ecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhccee
Q 002446          261 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI  340 (921)
Q Consensus       261 ~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl  340 (921)
                      .+|..   +         .+.+++       +             |+              |.                 
T Consensus       189 ~gh~~---~---------v~t~~v-------S-------------pD--------------Gs-----------------  205 (315)
T KOG0279|consen  189 IGHSG---Y---------VNTVTV-------S-------------PD--------------GS-----------------  205 (315)
T ss_pred             ccccc---c---------EEEEEE-------C-------------CC--------------CC-----------------
Confidence            55421   1         122222       1             11              11                 


Q ss_pred             EecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECC
Q 002446          341 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP  420 (921)
Q Consensus       341 ~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSP  420 (921)
                                                               ..++++.+|.+.+||+..++.+..+ .|..+|.+|+|+|
T Consensus       206 -----------------------------------------lcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fsp  243 (315)
T KOG0279|consen  206 -----------------------------------------LCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSP  243 (315)
T ss_pred             -----------------------------------------EEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecC
Confidence                                                     1123567899999999999987665 5678999999999


Q ss_pred             CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe---ccc----ccccEEEEEEccCCCEEEEEeCCCcE
Q 002446          421 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGL----TNAVIQDISFSDDSNWIMISSSRGTS  493 (921)
Q Consensus       421 dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~---RG~----t~a~I~sIaFSPDg~~LAsgS~DgTV  493 (921)
                      +--.|+.|-..  .|+|||+.+..              .+.+|+   -|.    ....-.+++||+||+.|..|-.|+.|
T Consensus       244 nrywL~~at~~--sIkIwdl~~~~--------------~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i  307 (315)
T KOG0279|consen  244 NRYWLCAATAT--SIKIWDLESKA--------------VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI  307 (315)
T ss_pred             CceeEeeccCC--ceEEEeccchh--------------hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence            98888876644  59999999861              111111   011    01124678999999999999999999


Q ss_pred             EEEecCC
Q 002446          494 HLFAINP  500 (921)
Q Consensus       494 hVWdi~~  500 (921)
                      ++|.+..
T Consensus       308 rv~qv~~  314 (315)
T KOG0279|consen  308 RVWQVAK  314 (315)
T ss_pred             EEEEeec
Confidence            9998854

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=3e-15  Score=155.29  Aligned_cols=251  Identities=14%  Similarity=0.195  Sum_probs=183.7

Q ss_pred             CCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCC
Q 002446           85 ESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRP  164 (921)
Q Consensus        85 ~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rP  164 (921)
                      +.+++.|.-++||-   ||+   -||..|.+..+++|+... +.+.+..+.|.-.|..+....+.              .
T Consensus        14 ~~~qgaV~avryN~---dGn---Y~ltcGsdrtvrLWNp~r-g~liktYsghG~EVlD~~~s~Dn--------------s   72 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNV---DGN---YCLTCGSDRTVRLWNPLR-GALIKTYSGHGHEVLDAALSSDN--------------S   72 (307)
T ss_pred             cccccceEEEEEcc---CCC---EEEEcCCCceEEeecccc-cceeeeecCCCceeeeccccccc--------------c
Confidence            56788999999999   874   899999999999999987 67888899898888887765421              1


Q ss_pred             EEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEcC--CEEEE-
Q 002446          165 LLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAI-  240 (921)
Q Consensus       165 LLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~--riLAV-  240 (921)
                      -++.|++          |                       +.|.+||..||+.++.++- ...|.+|+||.  .+|+. 
T Consensus        73 kf~s~Gg----------D-----------------------k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sg  119 (307)
T KOG0316|consen   73 KFASCGG----------D-----------------------KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASG  119 (307)
T ss_pred             ccccCCC----------C-----------------------ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEec
Confidence            1232332          1                       6799999999999998875 57999999983  56665 


Q ss_pred             EeCCEEEEEECCC--CcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccc
Q 002446          241 CQAAQVHCFDAAT--LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF  318 (921)
Q Consensus       241 a~d~~I~IwDl~T--~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~  318 (921)
                      +.|.+|++||-+.  .++++.+.+..+              +.+.+     ..                           
T Consensus       120 sfD~s~r~wDCRS~s~ePiQildea~D--------------~V~Si-----~v---------------------------  153 (307)
T KOG0316|consen  120 SFDSSVRLWDCRSRSFEPIQILDEAKD--------------GVSSI-----DV---------------------------  153 (307)
T ss_pred             cccceeEEEEcccCCCCccchhhhhcC--------------ceeEE-----Ee---------------------------
Confidence            7899999999764  344444432211              00000     00                           


Q ss_pred             cCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECC
Q 002446          319 ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV  398 (921)
Q Consensus       319 ~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~  398 (921)
                                    ++                                              -.++.+..||+++.||+.
T Consensus       154 --------------~~----------------------------------------------heIvaGS~DGtvRtydiR  173 (307)
T KOG0316|consen  154 --------------AE----------------------------------------------HEIVAGSVDGTVRTYDIR  173 (307)
T ss_pred             --------------cc----------------------------------------------cEEEeeccCCcEEEEEee
Confidence                          00                                              012345668999999999


Q ss_pred             CCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccccccc-EEEEEE
Q 002446          399 SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISF  477 (921)
Q Consensus       399 s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~-I~sIaF  477 (921)
                      .|+.....-+|  ||+|++|++||..+..++-|++ +|+-|-.++              +.+ .-..||.+.. =.+++|
T Consensus       174 ~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~st-lrLlDk~tG--------------klL-~sYkGhkn~eykldc~l  235 (307)
T KOG0316|consen  174 KGTLSSDYFGH--PITSVSFSKDGNCSLASSLDST-LRLLDKETG--------------KLL-KSYKGHKNMEYKLDCCL  235 (307)
T ss_pred             cceeehhhcCC--cceeEEecCCCCEEEEeeccce-eeecccchh--------------HHH-HHhcccccceeeeeeee
Confidence            99876555554  9999999999999999999987 899998876              222 2223544332 457889


Q ss_pred             ccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCC
Q 002446          478 SDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN  513 (921)
Q Consensus       478 SPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~  513 (921)
                      +.-...+++||.||.|.+||+........+..|+..
T Consensus       236 ~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v  271 (307)
T KOG0316|consen  236 NQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV  271 (307)
T ss_pred             cccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence            988999999999999999999887666666666443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=2.8e-15  Score=171.09  Aligned_cols=247  Identities=16%  Similarity=0.216  Sum_probs=185.2

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEE
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLL  166 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLL  166 (921)
                      +.|+|-.+.|-+-|      +=+|+.=|++.++|||-++.. ..+-+.-.+-|||.++++++              ..-+
T Consensus        12 rSdRVKsVd~HPte------Pw~la~LynG~V~IWnyetqt-mVksfeV~~~PvRa~kfiaR--------------knWi   70 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTE------PWILAALYNGDVQIWNYETQT-MVKSFEVSEVPVRAAKFIAR--------------KNWI   70 (794)
T ss_pred             cCCceeeeecCCCC------ceEEEeeecCeeEEEecccce-eeeeeeecccchhhheeeec--------------cceE
Confidence            67889999998722      356666667779999999832 22334445789998888863              2344


Q ss_pred             EEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEcC---CEEEEEe
Q 002446          167 VFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAICQ  242 (921)
Q Consensus       167 Avv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~---riLAVa~  242 (921)
                      ++..|          |                       ..||+|+..|++.|++++- +.-|++|+.-+   -+|..+.
T Consensus        71 v~GsD----------D-----------------------~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD  117 (794)
T KOG0276|consen   71 VTGSD----------D-----------------------MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD  117 (794)
T ss_pred             EEecC----------C-----------------------ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCC
Confidence            33332          2                       5699999999999999985 66899999953   3455566


Q ss_pred             CCEEEEEECCCC-cEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCC
Q 002446          243 AAQVHCFDAATL-EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN  321 (921)
Q Consensus       243 d~~I~IwDl~T~-~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~  321 (921)
                      |-+|++||-... .+.+++++|.-.              .|.     +|+-+++                          
T Consensus       118 Dm~iKlW~we~~wa~~qtfeGH~Hy--------------VMq-----v~fnPkD--------------------------  152 (794)
T KOG0276|consen  118 DMTIKLWDWENEWACEQTFEGHEHY--------------VMQ-----VAFNPKD--------------------------  152 (794)
T ss_pred             ccEEEEeeccCceeeeeEEcCcceE--------------EEE-----EEecCCC--------------------------
Confidence            779999998754 567777776321              121     2222100                          


Q ss_pred             CcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCc
Q 002446          322 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN  401 (921)
Q Consensus       322 g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~  401 (921)
                                                                                +.+|+++.-|++|+||.+.+..
T Consensus       153 ----------------------------------------------------------~ntFaS~sLDrTVKVWslgs~~  174 (794)
T KOG0276|consen  153 ----------------------------------------------------------PNTFASASLDRTVKVWSLGSPH  174 (794)
T ss_pred             ----------------------------------------------------------ccceeeeeccccEEEEEcCCCC
Confidence                                                                      1135566778999999999999


Q ss_pred             eEEEeccCCCCeEEEEECCCC--CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEcc
Q 002446          402 VIAQFRAHKSPISALCFDPSG--ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD  479 (921)
Q Consensus       402 ~l~~~~aH~~pIsaLaFSPdG--tlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSP  479 (921)
                      +..+|++|...|.|++|=|-|  -+|+||++|-+ |+|||..+.              .++.+| .||++ .|..++|.|
T Consensus       175 ~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk--------------~CV~TL-eGHt~-Nvs~v~fhp  237 (794)
T KOG0276|consen  175 PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTK--------------SCVQTL-EGHTN-NVSFVFFHP  237 (794)
T ss_pred             CceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchH--------------HHHHHh-hcccc-cceEEEecC
Confidence            999999999999999999866  49999999965 999999875              345566 47765 499999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          480 DSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       480 Dg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                      .=.++++||.|||++||.-.++....++
T Consensus       238 ~lpiiisgsEDGTvriWhs~Ty~lE~tL  265 (794)
T KOG0276|consen  238 ELPIIISGSEDGTVRIWNSKTYKLEKTL  265 (794)
T ss_pred             CCcEEEEecCCccEEEecCcceehhhhh
Confidence            9999999999999999999988776655

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.67  E-value=4.4e-15  Score=155.91  Aligned_cols=252  Identities=16%  Similarity=0.223  Sum_probs=178.4

Q ss_pred             CCCCCCCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCCCeEEee-eeecCCEEEEEEecCCCCCccccCcc
Q 002446           82 RDDESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLV-SRYDGPVSFMQMLPRPITSKRSRDKF  159 (921)
Q Consensus        82 ~~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~~~~elv-S~~dG~Vr~v~~lP~P~~~~~~~d~F  159 (921)
                      ++-.+|..+|..+.|+-   +|    .-|+.|. +....||+++...-..++. .+|.+.|--+..-|.  .        
T Consensus        14 r~~~~~~~~v~Sv~wn~---~g----~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~--~--------   76 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNC---DG----TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK--H--------   76 (313)
T ss_pred             HHhhhhhhcceEEEEcc---cC----ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC--C--------
Confidence            45567899999999998   77    4555555 6668999999853333433 455556665544432  1        


Q ss_pred             ccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCE
Q 002446          160 AEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRV  237 (921)
Q Consensus       160 ~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S--~ri  237 (921)
                         -++++.+.++                                 .+||+||.+++++++.+.-+..=..+.++  +.+
T Consensus        77 ---~d~~atas~d---------------------------------k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~  120 (313)
T KOG1407|consen   77 ---PDLFATASGD---------------------------------KTIRIWDIRSGKCTARIETKGENINITWSPDGEY  120 (313)
T ss_pred             ---CcceEEecCC---------------------------------ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCE
Confidence               2566666532                                 67999999999999999987666667776  466


Q ss_pred             EEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccc
Q 002446          238 VAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFS  316 (921)
Q Consensus       238 LAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~  316 (921)
                      +++ .-+..|.++|+++.+.....+-.     +        -.+-++       +.                ++      
T Consensus       121 ~~~~~kdD~it~id~r~~~~~~~~~~~-----~--------e~ne~~-------w~----------------~~------  158 (313)
T KOG1407|consen  121 IAVGNKDDRITFIDARTYKIVNEEQFK-----F--------EVNEIS-------WN----------------NS------  158 (313)
T ss_pred             EEEecCcccEEEEEecccceeehhccc-----c--------eeeeee-------ec----------------CC------
Confidence            666 66789999999987754432210     0        001010       00                00      


Q ss_pred             cccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEE
Q 002446          317 GFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRD  396 (921)
Q Consensus       317 ~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwD  396 (921)
                                                 ++                                    .|.-+...|+|.|..
T Consensus       159 ---------------------------nd------------------------------------~Fflt~GlG~v~ILs  175 (313)
T KOG1407|consen  159 ---------------------------ND------------------------------------LFFLTNGLGCVEILS  175 (313)
T ss_pred             ---------------------------CC------------------------------------EEEEecCCceEEEEe
Confidence                                       00                                    011112348999999


Q ss_pred             CCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEE
Q 002446          397 IVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS  476 (921)
Q Consensus       397 l~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIa  476 (921)
                      ....+++..+++|....-|++|+|+|++||+||.|. .+-+||+..-              .++..+.|-  ...|..|+
T Consensus       176 ypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA-lvSLWD~~EL--------------iC~R~isRl--dwpVRTlS  238 (313)
T KOG1407|consen  176 YPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA-LVSLWDVDEL--------------ICERCISRL--DWPVRTLS  238 (313)
T ss_pred             ccccccccccccCCcceEEEEECCCCceEeeccccc-eeeccChhHh--------------hhheeeccc--cCceEEEE
Confidence            999999999999999999999999999999999996 5999999874              344444442  24599999


Q ss_pred             EccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 002446          477 FSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ  508 (921)
Q Consensus       477 FSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~  508 (921)
                      ||.||++||++|.|.-|-|=.+.++.....++
T Consensus       239 FS~dg~~lASaSEDh~IDIA~vetGd~~~eI~  270 (313)
T KOG1407|consen  239 FSHDGRMLASASEDHFIDIAEVETGDRVWEIP  270 (313)
T ss_pred             eccCcceeeccCccceEEeEecccCCeEEEee
Confidence            99999999999999999988887765544443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.67  E-value=1.7e-14  Score=167.54  Aligned_cols=265  Identities=18%  Similarity=0.278  Sum_probs=182.4

Q ss_pred             CCCCCCCcEEEEEEecccCCCCCCCeEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCcccc
Q 002446           83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~  161 (921)
                      ..++|-+.|..+...+   ||    ++++.|.++| ++|||... +-|.-.++.|...|..+++..+             
T Consensus       345 KQQgH~~~i~~l~YSp---Dg----q~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~-------------  403 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSP---DG----QLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTAR-------------  403 (893)
T ss_pred             eccccccceeeEEECC---CC----cEEEeccCCCcEEEEeccC-ceEEEEeccCCCceEEEEEEec-------------
Confidence            4457777788888777   76    7888888665 99999987 6788889999999999998642             


Q ss_pred             CCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEE----cCCE
Q 002446          162 VRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRC----SSRV  237 (921)
Q Consensus       162 ~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~----S~ri  237 (921)
                      .+-+|..+-|                                  ++||.||++....-+++.-|.++.-.+.    ++.+
T Consensus       404 g~~llssSLD----------------------------------GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel  449 (893)
T KOG0291|consen  404 GNVLLSSSLD----------------------------------GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL  449 (893)
T ss_pred             CCEEEEeecC----------------------------------CeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence            1223322222                                  7899999999999999999887654433    4677


Q ss_pred             EEE-EeCC-EEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccccccc
Q 002446          238 VAI-CQAA-QVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSF  315 (921)
Q Consensus       238 LAV-a~d~-~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~  315 (921)
                      |.+ +++. .|++|++.|++.+-.|.+|..               |+.    -|++.             |.        
T Consensus       450 V~AG~~d~F~IfvWS~qTGqllDiLsGHEg---------------PVs----~l~f~-------------~~--------  489 (893)
T KOG0291|consen  450 VCAGAQDSFEIFVWSVQTGQLLDILSGHEG---------------PVS----GLSFS-------------PD--------  489 (893)
T ss_pred             EEeeccceEEEEEEEeecCeeeehhcCCCC---------------cce----eeEEc-------------cc--------
Confidence            666 4443 899999999999988887743               221    12222             00        


Q ss_pred             ccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEE
Q 002446          316 SGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVR  395 (921)
Q Consensus       316 ~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~Iw  395 (921)
                            |+                                                          +++++.-|.+|++|
T Consensus       490 ------~~----------------------------------------------------------~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  490 ------GS----------------------------------------------------------LLASGSWDKTVRIW  505 (893)
T ss_pred             ------cC----------------------------------------------------------eEEeccccceEEEE
Confidence                  00                                                          12344567899999


Q ss_pred             ECCCCc-eEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCC-----CCCCccCCCCceeEEEEEeccccc
Q 002446          396 DIVSKN-VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-----GTSSACDAGTSYVHLYRLQRGLTN  469 (921)
Q Consensus       396 Dl~s~~-~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~-----~~~s~~~~~~~~~~l~~l~RG~t~  469 (921)
                      |+-... .+.++ .+.+-+.+++|+|||+-||.+..||. |.+||+..+..     |.-...+.... ....+-+.....
T Consensus       506 ~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgq-Itf~d~~~~~q~~~IdgrkD~~~gR~~-~D~~ta~~sa~~  582 (893)
T KOG0291|consen  506 DIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQ-ITFFDIKEAVQVGSIDGRKDLSGGRKE-TDRITAENSAKG  582 (893)
T ss_pred             EeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecce-EEEEEhhhceeeccccchhhccccccc-cceeehhhcccC
Confidence            987653 33333 46778999999999999999999997 99999987521     00000000000 000010000011


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 002446          470 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP  509 (921)
Q Consensus       470 a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~  509 (921)
                      ..++.|++|+||++|.+|+....|.||++.+.--...++.
T Consensus       583 K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqi  622 (893)
T KOG0291|consen  583 KTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQI  622 (893)
T ss_pred             CceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEe
Confidence            1389999999999999999999999999988755556653

>PTZ00421 coronin; Provisional

Probab=99.67  E-value=5.1e-14  Score=165.05  Aligned_cols=223  Identities=14%  Similarity=0.123  Sum_probs=152.4

Q ss_pred             CcEEEEEccCCCCeEE---eeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCC
Q 002446          116 SGFQVWDVEEADNVHD---LVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTS  192 (921)
Q Consensus       116 ~GfqVWDv~~~~~~~e---lvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~  192 (921)
                      +|+.|+.++..|....   ++..|.++|..+++.|.             ...+|+.++.          |          
T Consensus        51 gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-------------d~~~LaSgS~----------D----------   97 (493)
T PTZ00421         51 GSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-------------DPQKLFTASE----------D----------   97 (493)
T ss_pred             CceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-------------CCCEEEEEeC----------C----------
Confidence            4455555554454332   56789999999999862             1135655543          2          


Q ss_pred             CCcCCCCCCCCCCcEEEEEECCCCc-------EEEEEe-CCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCcEEEEE
Q 002446          193 ANYHDLGNGSSVPTVVHFYSLRSQS-------YVHMLK-FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEYAI  260 (921)
Q Consensus       193 ~~~h~~g~~~~~~~tVrIWDL~Tg~-------~V~tL~-f~s~V~sV~~S~---riLAV-a~d~~I~IwDl~T~~~l~tL  260 (921)
                                   ++|++||+.++.       .+..|. +...|..|+|++   ++|++ +.|++|+|||+.+++.+.++
T Consensus        98 -------------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l  164 (493)
T PTZ00421         98 -------------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI  164 (493)
T ss_pred             -------------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE
Confidence                         789999998763       455565 457899999973   56776 67899999999999887777


Q ss_pred             ecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhccee
Q 002446          261 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI  340 (921)
Q Consensus       261 ~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl  340 (921)
                      ..|..               .+    ..|++..             +              |.                 
T Consensus       165 ~~h~~---------------~V----~sla~sp-------------d--------------G~-----------------  181 (493)
T PTZ00421        165 KCHSD---------------QI----TSLEWNL-------------D--------------GS-----------------  181 (493)
T ss_pred             cCCCC---------------ce----EEEEEEC-------------C--------------CC-----------------
Confidence            65532               11    1223321             0              10                 


Q ss_pred             EecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCe-EEEEEC
Q 002446          341 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPI-SALCFD  419 (921)
Q Consensus       341 ~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pI-saLaFS  419 (921)
                                                               .++++..+|+|+|||+.+++.+..+.+|.+.+ ..+.|.
T Consensus       182 -----------------------------------------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~  220 (493)
T PTZ00421        182 -----------------------------------------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA  220 (493)
T ss_pred             -----------------------------------------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence                                                     12234568999999999999999999998764 568899


Q ss_pred             CCCCEEEEEe----cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEE
Q 002446          420 PSGILLVTAS----VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSH  494 (921)
Q Consensus       420 PdGtlLATaS----~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS-~DgTVh  494 (921)
                      |++.+|++++    .|++ |+|||+....             ..+... .......+....|++|+++|++++ .|++|+
T Consensus       221 ~~~~~ivt~G~s~s~Dr~-VklWDlr~~~-------------~p~~~~-~~d~~~~~~~~~~d~d~~~L~lggkgDg~Ir  285 (493)
T PTZ00421        221 KRKDLIITLGCSKSQQRQ-IMLWDTRKMA-------------SPYSTV-DLDQSSALFIPFFDEDTNLLYIGSKGEGNIR  285 (493)
T ss_pred             CCCCeEEEEecCCCCCCe-EEEEeCCCCC-------------CceeEe-ccCCCCceEEEEEcCCCCEEEEEEeCCCeEE
Confidence            9988888765    3665 9999997640             111111 112223366778999999999988 499999


Q ss_pred             EEecCCCCC
Q 002446          495 LFAINPLGG  503 (921)
Q Consensus       495 VWdi~~~g~  503 (921)
                      +|++.....
T Consensus       286 iwdl~~~~~  294 (493)
T PTZ00421        286 CFELMNERL  294 (493)
T ss_pred             EEEeeCCce
Confidence            999987543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.67  E-value=3.3e-15  Score=173.36  Aligned_cols=224  Identities=17%  Similarity=0.295  Sum_probs=171.7

Q ss_pred             eEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 002446          108 RVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT  186 (921)
Q Consensus       108 ~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~  186 (921)
                      +++++|+.+| +||||+..+ ...|....|+|.+..++.+|+..       .|         +.++              
T Consensus       425 ~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~-------g~---------vT~s--------------  473 (888)
T KOG0306|consen  425 RYIVLGTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNK-------GF---------VTGS--------------  473 (888)
T ss_pred             ceEEEeccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCC-------ce---------EEec--------------
Confidence            7888899887 899999884 45567778999999998887521       11         1111              


Q ss_pred             ccCCCCCCcCCCCCCCCCCcEEEEEECCC-----CcE--------EEEEeCCCCEEEEEEc--CCEEEE-EeCCEEEEEE
Q 002446          187 ACNGTSANYHDLGNGSSVPTVVHFYSLRS-----QSY--------VHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFD  250 (921)
Q Consensus       187 ~~~g~~~~~h~~g~~~~~~~tVrIWDL~T-----g~~--------V~tL~f~s~V~sV~~S--~riLAV-a~d~~I~IwD  250 (921)
                                       .+++|+|||.+-     |..        -++|+++..|.+|++|  +++||| -++++++||=
T Consensus       474 -----------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyf  536 (888)
T KOG0306|consen  474 -----------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYF  536 (888)
T ss_pred             -----------------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEE
Confidence                             228999999742     111        2567889999999998  699999 5789999999


Q ss_pred             CCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhh
Q 002446          251 AATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK  330 (921)
Q Consensus       251 l~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~  330 (921)
                      +.|++-.-+|-+|..|.-            .|.+       +             |+              +        
T Consensus       537 lDtlKFflsLYGHkLPV~------------smDI-------S-------------~D--------------S--------  562 (888)
T KOG0306|consen  537 LDTLKFFLSLYGHKLPVL------------SMDI-------S-------------PD--------------S--------  562 (888)
T ss_pred             ecceeeeeeeccccccee------------EEec-------c-------------CC--------------c--------
Confidence            999987777767654211            1111       0             11              0        


Q ss_pred             hcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCC
Q 002446          331 ESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK  410 (921)
Q Consensus       331 ~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~  410 (921)
                         |                                               .++++..|..|+||-++=|.+-..|-||.
T Consensus       563 ---k-----------------------------------------------livTgSADKnVKiWGLdFGDCHKS~fAHd  592 (888)
T KOG0306|consen  563 ---K-----------------------------------------------LIVTGSADKNVKIWGLDFGDCHKSFFAHD  592 (888)
T ss_pred             ---C-----------------------------------------------eEEeccCCCceEEeccccchhhhhhhccc
Confidence               0                                               12344567889999999999999999999


Q ss_pred             CCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 002446          411 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR  490 (921)
Q Consensus       411 ~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~D  490 (921)
                      .+|.++.|=|...++.||+.||. |+-||-...              .++.+| +||+ ..|+|++-+|+|.|++++|.|
T Consensus       593 DSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kF--------------e~iq~L-~~H~-~ev~cLav~~~G~~vvs~shD  655 (888)
T KOG0306|consen  593 DSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKF--------------EEIQKL-DGHH-SEVWCLAVSPNGSFVVSSSHD  655 (888)
T ss_pred             CceeEEEEcccceeEEEecCcce-EEeechhhh--------------hhheee-ccch-heeeeeEEcCCCCeEEeccCC
Confidence            99999999999999999999986 999998764              556666 4554 469999999999999999999


Q ss_pred             CcEEEEecCC
Q 002446          491 GTSHLFAINP  500 (921)
Q Consensus       491 gTVhVWdi~~  500 (921)
                      .+|++|....
T Consensus       656 ~sIRlwE~td  665 (888)
T KOG0306|consen  656 KSIRLWERTD  665 (888)
T ss_pred             ceeEeeeccC
Confidence            9999998654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.66  E-value=5.3e-14  Score=153.24  Aligned_cols=289  Identities=17%  Similarity=0.202  Sum_probs=182.3

Q ss_pred             CCCCCCCcEEEEEEecccCCCCCCCeEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCcccc
Q 002446           83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~  161 (921)
                      +..+|||.|+.+.|..   |+    .+|+.|--.| ++||.+.+.....++.    ++|.-+.++.....          
T Consensus       101 eltgHKDSVt~~~Fsh---dg----tlLATGdmsG~v~v~~~stg~~~~~~~----~e~~dieWl~WHp~----------  159 (399)
T KOG0296|consen  101 ELTGHKDSVTCCSFSH---DG----TLLATGDMSGKVLVFKVSTGGEQWKLD----QEVEDIEWLKWHPR----------  159 (399)
T ss_pred             EecCCCCceEEEEEcc---Cc----eEEEecCCCccEEEEEcccCceEEEee----cccCceEEEEeccc----------
Confidence            4458999999999999   77    6888887555 8999999854444443    56666666654211          


Q ss_pred             CCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCE-
Q 002446          162 VRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRV-  237 (921)
Q Consensus       162 ~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S--~ri-  237 (921)
                       .++|+ ++.         .|                       +.|-.|.+..+.+.+.+.- .+++..=+|.  ++. 
T Consensus       160 -a~ill-AG~---------~D-----------------------GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~  205 (399)
T KOG0296|consen  160 -AHILL-AGS---------TD-----------------------GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI  205 (399)
T ss_pred             -ccEEE-eec---------CC-----------------------CcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence             13333 332         12                       5688999999877777765 4577766674  444 


Q ss_pred             EEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecC-ceEEecCCCceecCCCccCCcccccccccc
Q 002446          238 VAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP-RWLAYSGSPVVVSNDGRVNPQHLMQSRSFS  316 (921)
Q Consensus       238 LAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgp-RwLAyas~~~~~s~~GrvsPq~l~~s~~~~  316 (921)
                      +....+++|++||+.|++.++.+....   +.+        ..+++++. -|+++..+.     .+   +-++.      
T Consensus       206 ~tgy~dgti~~Wn~ktg~p~~~~~~~e---~~~--------~~~~~~~~~~~~~~~g~~-----e~---~~~~~------  260 (399)
T KOG0296|consen  206 LTGYDDGTIIVWNPKTGQPLHKITQAE---GLE--------LPCISLNLAGSTLTKGNS-----EG---VACGV------  260 (399)
T ss_pred             EEEecCceEEEEecCCCceeEEecccc---cCc--------CCccccccccceeEeccC-----Cc---cEEEE------
Confidence            445778999999999999998886321   110        11222221 233333211     00   00000      


Q ss_pred             cccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCC---cCCcccccCCCCCCCcccCcccccCCCCEEE
Q 002446          317 GFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS---QNSLQSAIPGGKSNGTVNGHFPDADNVGMVI  393 (921)
Q Consensus       317 ~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~---~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~  393 (921)
                       ....|+++....              |         ....+.+..   ..++.+.....+     -...+.+.-+|+|.
T Consensus       261 -~~~sgKVv~~~n--------------~---------~~~~l~~~~e~~~esve~~~~ss~-----lpL~A~G~vdG~i~  311 (399)
T KOG0296|consen  261 -NNGSGKVVNCNN--------------G---------TVPELKPSQEELDESVESIPSSSK-----LPLAACGSVDGTIA  311 (399)
T ss_pred             -ccccceEEEecC--------------C---------CCccccccchhhhhhhhhcccccc-----cchhhcccccceEE
Confidence             001122111100              0         000011111   111111111110     11334566789999


Q ss_pred             EEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEE
Q 002446          394 VRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ  473 (921)
Q Consensus       394 IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~  473 (921)
                      |||+.+.++ +++-.|..+|..|.|-+ -.+|+||+.+|+ ||+||..+|              .+++++ +||.. .|+
T Consensus       312 iyD~a~~~~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG--------------~l~~~y-~GH~~-~Il  372 (399)
T KOG0296|consen  312 IYDLAASTL-RHICEHEDGVTKLKWLN-TDYLLTACANGK-VRQWDARTG--------------QLKFTY-TGHQM-GIL  372 (399)
T ss_pred             EEecccchh-heeccCCCceEEEEEcC-cchheeeccCce-EEeeecccc--------------ceEEEE-ecCch-hee
Confidence            999988765 56667999999999999 788999999997 999999997              455555 68754 599


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEecC
Q 002446          474 DISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       474 sIaFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                      +++.+||.++++++|.|+|.+||++.
T Consensus       373 ~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  373 DFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999999999874

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.65  E-value=2.5e-15  Score=165.44  Aligned_cols=237  Identities=16%  Similarity=0.243  Sum_probs=176.2

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEE
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLL  166 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLL  166 (921)
                      ....|+-..||.   ++   +.+|+.++++..++|+++. ...+..++.|.+.|.++++.-.            +    .
T Consensus       218 s~g~it~~d~d~---~~---~~~iAas~d~~~r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~------------~----~  274 (459)
T KOG0288|consen  218 SLGNITSIDFDS---DN---KHVIAASNDKNLRLWNVDS-LRLRHTLSGHTDKVTAAKFKLS------------H----S  274 (459)
T ss_pred             cCCCcceeeecC---CC---ceEEeecCCCceeeeeccc-hhhhhhhcccccceeeehhhcc------------c----c
Confidence            345577888887   55   5899999999999999998 4677789999999999987531            1    1


Q ss_pred             EEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEE-EeCCE
Q 002446          167 VFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAI-CQAAQ  245 (921)
Q Consensus       167 Avv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S~riLAV-a~d~~  245 (921)
                      +++++.                               .+.+|++||+....|.+++-+-+.+.+|.++...++. =.|++
T Consensus       275 ~vVsgs-------------------------------~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dkk  323 (459)
T KOG0288|consen  275 RVVSGS-------------------------------ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKK  323 (459)
T ss_pred             ceeecc-------------------------------ccchhhhhhhhhhheeccccccccccceEecceeeeecccccc
Confidence            244431                               2388999999999999999999999999998655555 36889


Q ss_pred             EEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcce
Q 002446          246 VHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRV  325 (921)
Q Consensus       246 I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~V  325 (921)
                      |++||+++..+.+.+.....             +..+.+       .             +.              |-  
T Consensus       324 vRfwD~Rs~~~~~sv~~gg~-------------vtSl~l-------s-------------~~--------------g~--  354 (459)
T KOG0288|consen  324 VRFWDIRSADKTRSVPLGGR-------------VTSLDL-------S-------------MD--------------GL--  354 (459)
T ss_pred             eEEEeccCCceeeEeecCcc-------------eeeEee-------c-------------cC--------------Ce--
Confidence            99999999887776643210             000110       0             00              00  


Q ss_pred             eehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEE
Q 002446          326 AHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQ  405 (921)
Q Consensus       326 a~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~  405 (921)
                                                                              .+.+...+.++.+.|+.+......
T Consensus       355 --------------------------------------------------------~lLsssRDdtl~viDlRt~eI~~~  378 (459)
T KOG0288|consen  355 --------------------------------------------------------ELLSSSRDDTLKVIDLRTKEIRQT  378 (459)
T ss_pred             --------------------------------------------------------EEeeecCCCceeeeecccccEEEE
Confidence                                                                    011123456788999999888888


Q ss_pred             eccCC----CCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCC
Q 002446          406 FRAHK----SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS  481 (921)
Q Consensus       406 ~~aH~----~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg  481 (921)
                      |.+-.    +..+.+.|||+|.|+|+||.||. |+||++.++              .+...+.--..++.|.+++|+|-|
T Consensus       379 ~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tg--------------KlE~~l~~s~s~~aI~s~~W~~sG  443 (459)
T KOG0288|consen  379 FSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTG--------------KLEKVLSLSTSNAAITSLSWNPSG  443 (459)
T ss_pred             eeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCc--------------eEEEEeccCCCCcceEEEEEcCCC
Confidence            87432    45889999999999999999997 899999986              333444433333359999999999


Q ss_pred             CEEEEEeCCCcEEEEe
Q 002446          482 NWIMISSSRGTSHLFA  497 (921)
Q Consensus       482 ~~LAsgS~DgTVhVWd  497 (921)
                      ++|++++.++.+.+|.
T Consensus       444 ~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  444 SGLLSADKQKAVTLWT  459 (459)
T ss_pred             chhhcccCCcceEecC
Confidence            9999999999999994

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.65  E-value=2.8e-15  Score=162.54  Aligned_cols=188  Identities=14%  Similarity=0.224  Sum_probs=144.6

Q ss_pred             cEEEEEECCCCcEEEEEe-CCCCEEEEEEcCC---EEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccc
Q 002446          206 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCSSR---VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP  281 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S~r---iLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~p  281 (921)
                      ++++|||+.||++..+|. +-+.|..|++|.+   ++.+..+++|+|||+...+.++..-+|-.              +.
T Consensus       173 rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS--------------~V  238 (460)
T KOG0285|consen  173 RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS--------------GV  238 (460)
T ss_pred             ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc--------------ee
Confidence            899999999999999998 6899999999853   44557889999999998776654433310              00


Q ss_pred             eeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCC
Q 002446          282 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD  361 (921)
Q Consensus       282 iAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~  361 (921)
                      .+     |+                                                                   +.|.
T Consensus       239 ~~-----L~-------------------------------------------------------------------lhPT  246 (460)
T KOG0285|consen  239 YC-----LD-------------------------------------------------------------------LHPT  246 (460)
T ss_pred             EE-----Ee-------------------------------------------------------------------cccc
Confidence            11     11                                                                   1111


Q ss_pred             CcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCC
Q 002446          362 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII  441 (921)
Q Consensus       362 ~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~  441 (921)
                      -                  ..+++++.|.+++|||+.++..+..|.+|+.+|..+.|.|-.-.++|||.|++ |++||+.
T Consensus       247 l------------------dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t-vrlWDl~  307 (460)
T KOG0285|consen  247 L------------------DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST-VRLWDLR  307 (460)
T ss_pred             c------------------eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce-EEEeeec
Confidence            0                  01234567889999999999999999999999999999998778999999997 9999998


Q ss_pred             CCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          442 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       442 ~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      -+              +.+.++.  ++...|.+++..|.-..||++|.|. |+-|++..+.-...+.+|...++
T Consensus       308 ag--------------kt~~tlt--~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iin  364 (460)
T KOG0285|consen  308 AG--------------KTMITLT--HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIIN  364 (460)
T ss_pred             cC--------------ceeEeee--cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceee
Confidence            76              3334442  2233499999999999999999885 89999987766667888877666

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.65  E-value=1.3e-14  Score=162.54  Aligned_cols=234  Identities=20%  Similarity=0.298  Sum_probs=167.1

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      =|+.|..+.|-+   ||    ++|++|-..| +||||..+ -.+...+..|..||..++|.|.-             --+
T Consensus        67 Fk~~v~s~~fR~---DG----~LlaaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d-------------~t~  125 (487)
T KOG0310|consen   67 FKDVVYSVDFRS---DG----RLLAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQD-------------NTM  125 (487)
T ss_pred             hccceeEEEeec---CC----eEEEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEecccC-------------CeE
Confidence            478899999999   88    7999998887 79999655 23444567899999999998741             123


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-CCCCEEEEEEcC---CEEEE-
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS---RVVAI-  240 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S~---riLAV-  240 (921)
                      |+.++|+                                 .++++||+.+......|. +...|++.+|++   .+++. 
T Consensus       126 l~s~sDd---------------------------------~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtG  172 (487)
T KOG0310|consen  126 LVSGSDD---------------------------------KVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTG  172 (487)
T ss_pred             EEecCCC---------------------------------ceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEec
Confidence            4444431                                 689999999988654554 467899999964   46666 


Q ss_pred             EeCCEEEEEECCCC-cEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccccccccccc
Q 002446          241 CQAAQVHCFDAATL-EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFA  319 (921)
Q Consensus       241 a~d~~I~IwDl~T~-~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~  319 (921)
                      +.|++|++||+++. ....++. |    ++|           +.   +-|+.+                           
T Consensus       173 sYDg~vrl~DtR~~~~~v~eln-h----g~p-----------Ve---~vl~lp---------------------------  206 (487)
T KOG0310|consen  173 SYDGKVRLWDTRSLTSRVVELN-H----GCP-----------VE---SVLALP---------------------------  206 (487)
T ss_pred             CCCceEEEEEeccCCceeEEec-C----CCc-----------ee---eEEEcC---------------------------
Confidence            78999999999987 4444443 2    222           11   112221                           


Q ss_pred             CCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCC
Q 002446          320 SNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS  399 (921)
Q Consensus       320 s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s  399 (921)
                       +|+++                                                          +++ ....|+|||+.+
T Consensus       207 -sgs~i----------------------------------------------------------asA-gGn~vkVWDl~~  226 (487)
T KOG0310|consen  207 -SGSLI----------------------------------------------------------ASA-GGNSVKVWDLTT  226 (487)
T ss_pred             -CCCEE----------------------------------------------------------EEc-CCCeEEEEEecC
Confidence             01111                                                          000 113699999995


Q ss_pred             C-ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEc
Q 002446          400 K-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS  478 (921)
Q Consensus       400 ~-~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFS  478 (921)
                      | +.+..+..|...|+||+|.-+++.|.+++-||+ ++|||+...              ..++.+.   -.+.|.+|+.|
T Consensus       227 G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~--------------Kvv~s~~---~~~pvLsiavs  288 (487)
T KOG0310|consen  227 GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNY--------------KVVHSWK---YPGPVLSIAVS  288 (487)
T ss_pred             CceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccce--------------EEEEeee---cccceeeEEec
Confidence            5 555556669999999999999999999999998 899997653              3333332   23469999999


Q ss_pred             cCCCEEEEEeCCCcEEEEec
Q 002446          479 DDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       479 PDg~~LAsgS~DgTVhVWdi  498 (921)
                      ||++-+++|-.+|.+-+-+.
T Consensus       289 ~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  289 PDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             CCCceEEEecccceeeeehh
Confidence            99999999999999877643

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=4.2e-15  Score=174.40  Aligned_cols=275  Identities=16%  Similarity=0.244  Sum_probs=178.6

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      ...+|-.++|-+       .|-.++.+..+| +|+||--- +-+.+-+-.||||||-+.|-|.              .||
T Consensus         8 kSsRvKglsFHP-------~rPwILtslHsG~IQlWDYRM-~tli~rFdeHdGpVRgv~FH~~--------------qpl   65 (1202)
T KOG0292|consen    8 KSSRVKGLSFHP-------KRPWILTSLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVDFHPT--------------QPL   65 (1202)
T ss_pred             ccccccceecCC-------CCCEEEEeecCceeeeehhhh-hhHHhhhhccCCccceeeecCC--------------CCe
Confidence            344566777766       467889999887 79999865 4455667789999999988763              366


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEcC---CEEEEE
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAIC  241 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~---riLAVa  241 (921)
                      .+..+|          |                       -+|++|+.++.+|+.+|.. -.-|+.+.|-.   =+|..+
T Consensus        66 FVSGGD----------D-----------------------ykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSAS  112 (1202)
T KOG0292|consen   66 FVSGGD----------D-----------------------YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSAS  112 (1202)
T ss_pred             EEecCC----------c-----------------------cEEEEEecccceehhhhccccceeEEeeccCCCceEEEcc
Confidence            543332          2                       6799999999999998864 57899999964   344556


Q ss_pred             eCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecC-CCceecCCCccCCcccccccccccccC
Q 002446          242 QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSG-SPVVVSNDGRVNPQHLMQSRSFSGFAS  320 (921)
Q Consensus       242 ~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas-~~~~~s~~GrvsPq~l~~s~~~~~~~s  320 (921)
                      .|.+|+||+-.+.+++.++.+|.-..              |+-     .|.+ .+++++                   +|
T Consensus       113 DDQTIrIWNwqsr~~iavltGHnHYV--------------McA-----qFhptEDlIVS-------------------aS  154 (1202)
T KOG0292|consen  113 DDQTIRIWNWQSRKCIAVLTGHNHYV--------------MCA-----QFHPTEDLIVS-------------------AS  154 (1202)
T ss_pred             CCCeEEEEeccCCceEEEEecCceEE--------------Eee-----ccCCccceEEE-------------------ec
Confidence            77899999999999999998884321              110     1111 111111                   00


Q ss_pred             CCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC
Q 002446          321 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK  400 (921)
Q Consensus       321 ~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~  400 (921)
                      -..+|..|..       +|++                   ..+.++.+..+.      ..+      ..+..-++--..-
T Consensus       155 LDQTVRVWDi-------sGLR-------------------kk~~~pg~~e~~------~~~------~~~~~dLfg~~Da  196 (1202)
T KOG0292|consen  155 LDQTVRVWDI-------SGLR-------------------KKNKAPGSLEDQ------MRG------QQGNSDLFGQTDA  196 (1202)
T ss_pred             ccceEEEEee-------cchh-------------------ccCCCCCCchhh------hhc------cccchhhcCCcCe
Confidence            1111111100       0110                   000000000000      000      0011111100011


Q ss_pred             ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccC
Q 002446          401 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD  480 (921)
Q Consensus       401 ~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPD  480 (921)
                      -+...+.+|.-.|+.++|.|.--++++|++|. .|++|.....            ..+.+-++ |||.+ .|.++-|.|.
T Consensus       197 VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR-qVKlWrmnet------------KaWEvDtc-rgH~n-nVssvlfhp~  261 (1202)
T KOG0292|consen  197 VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR-QVKLWRMNET------------KAWEVDTC-RGHYN-NVSSVLFHPH  261 (1202)
T ss_pred             eeeeeecccccccceEEecCCcceEEecCCcc-eeeEEEeccc------------cceeehhh-hcccC-CcceEEecCc
Confidence            13456789999999999999999999999995 5999998764            34555444 78765 4999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          481 SNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       481 g~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                      -..+.+.|.|++|+|||+....+..++
T Consensus       262 q~lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  262 QDLILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             cceeEecCCCccEEEEecccccceeee
Confidence            999999999999999999988777666

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.64  E-value=1.1e-15  Score=165.00  Aligned_cols=240  Identities=18%  Similarity=0.292  Sum_probs=175.8

Q ss_pred             CCCCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCC
Q 002446           85 ESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVR  163 (921)
Q Consensus        85 ~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~r  163 (921)
                      .+|...|++..||.         ++|+.|. +..++|||+++ ++...++-.|-..|--+++..                
T Consensus       234 ~GHtGSVLCLqyd~---------rviisGSSDsTvrvWDv~t-ge~l~tlihHceaVLhlrf~n----------------  287 (499)
T KOG0281|consen  234 TGHTGSVLCLQYDE---------RVIVSGSSDSTVRVWDVNT-GEPLNTLIHHCEAVLHLRFSN----------------  287 (499)
T ss_pred             hcCCCcEEeeeccc---------eEEEecCCCceEEEEeccC-CchhhHHhhhcceeEEEEEeC----------------
Confidence            47888899998887         7888888 55699999999 666666666777777777652                


Q ss_pred             CEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEE---EEE-eCCCCEEEEEEcCCEEE
Q 002446          164 PLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYV---HML-KFRSPIYSVRCSSRVVA  239 (921)
Q Consensus       164 PLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V---~tL-~f~s~V~sV~~S~riLA  239 (921)
                      .++..|+.          |                       .++++||+.+...+   +.| .+...|..|.|+.++++
T Consensus       288 g~mvtcSk----------D-----------------------rsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIV  334 (499)
T KOG0281|consen  288 GYMVTCSK----------D-----------------------RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  334 (499)
T ss_pred             CEEEEecC----------C-----------------------ceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEE
Confidence            35544442          2                       77999999876532   223 24689999999988887


Q ss_pred             E-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccc
Q 002446          240 I-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF  318 (921)
Q Consensus       240 V-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~  318 (921)
                      . +.|.+|++||..|+++++++.+|..  |             +|    .|.|-                          
T Consensus       335 sASgDRTikvW~~st~efvRtl~gHkR--G-------------IA----ClQYr--------------------------  369 (499)
T KOG0281|consen  335 SASGDRTIKVWSTSTCEFVRTLNGHKR--G-------------IA----CLQYR--------------------------  369 (499)
T ss_pred             EecCCceEEEEeccceeeehhhhcccc--c-------------ce----ehhcc--------------------------
Confidence            7 6788999999999999999987732  1             11    01111                          


Q ss_pred             cCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECC
Q 002446          319 ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV  398 (921)
Q Consensus       319 ~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~  398 (921)
                         |.+                                                          ++++..|.+|++||+.
T Consensus       370 ---~rl----------------------------------------------------------vVSGSSDntIRlwdi~  388 (499)
T KOG0281|consen  370 ---DRL----------------------------------------------------------VVSGSSDNTIRLWDIE  388 (499)
T ss_pred             ---CeE----------------------------------------------------------EEecCCCceEEEEecc
Confidence               111                                                          1234567899999999


Q ss_pred             CCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEc
Q 002446          399 SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS  478 (921)
Q Consensus       399 s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFS  478 (921)
                      .|+++..+++|..-|.|+.|+  .+.+++|..||+ |+|||+..+......+     ...++..+-+  +..+|..+.| 
T Consensus       389 ~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk-ikvWdl~aaldpra~~-----~~~Cl~~lv~--hsgRVFrLQF-  457 (499)
T KOG0281|consen  389 CGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLQAALDPRAPA-----STLCLRTLVE--HSGRVFRLQF-  457 (499)
T ss_pred             ccHHHHHHhchHHhhhheeec--Cceeeeccccce-EEEEecccccCCcccc-----cchHHHhhhh--ccceeEEEee-
Confidence            999999999999999999995  588999999998 9999998763211110     1123334332  3346888888 


Q ss_pred             cCCCEEEEEeCCCcEEEEecCCC
Q 002446          479 DDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       479 PDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                       |...++++|.|.||-|||.-.+
T Consensus       458 -D~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  458 -DEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             -cceEEEeccCCCeEEEEEcCCC
Confidence             5677889999999999998664

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.64  E-value=1.3e-14  Score=154.97  Aligned_cols=263  Identities=19%  Similarity=0.264  Sum_probs=175.9

Q ss_pred             HhcceeeeccCcchhhhhhhhhccccccCCCCCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEee
Q 002446           54 ISSYFRIVSSGASTVARSAVSVASSIVERDDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLV  133 (921)
Q Consensus        54 ~s~~~~~~ss~~~t~~~~~a~~~~s~~~~~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elv  133 (921)
                      ...+|-..+|-..||.-=-..-....++.....+...|+.++|..   ||.   +|++.|.++..++||+.. +.+ ..+
T Consensus        38 ~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd---dgs---kVf~g~~Dk~~k~wDL~S-~Q~-~~v  109 (347)
T KOG0647|consen   38 QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD---DGS---KVFSGGCDKQAKLWDLAS-GQV-SQV  109 (347)
T ss_pred             ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc---CCc---eEEeeccCCceEEEEccC-CCe-eee
Confidence            345666666666666411000001111122345677899999998   774   899999999999999998 344 467


Q ss_pred             eeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEEC
Q 002446          134 SRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSL  213 (921)
Q Consensus       134 S~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL  213 (921)
                      ..|+++|+++++.+.+.            .++|  +.++|                               ++|||+||+
T Consensus       110 ~~Hd~pvkt~~wv~~~~------------~~cl--~TGSW-------------------------------DKTlKfWD~  144 (347)
T KOG0647|consen  110 AAHDAPVKTCHWVPGMN------------YQCL--VTGSW-------------------------------DKTLKFWDT  144 (347)
T ss_pred             eecccceeEEEEecCCC------------ccee--Eeccc-------------------------------ccceeeccc
Confidence            78999999999997532            1333  45555                               289999999


Q ss_pred             CCCcEEEEEeCCCCEEEEEEcCCEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEec
Q 002446          214 RSQSYVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYS  292 (921)
Q Consensus       214 ~Tg~~V~tL~f~s~V~sV~~S~riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAya  292 (921)
                      |+...+.+++++..||++.+-..+++| ..++.|.+|+|+.....+....+|...                 -.|.+|..
T Consensus       145 R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~-----------------Q~R~va~f  207 (347)
T KOG0647|consen  145 RSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKW-----------------QTRCVACF  207 (347)
T ss_pred             CCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccc-----------------eeeEEEEE
Confidence            999999999999999999998777777 567899999998765544433332211                 01333322


Q ss_pred             CCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCC
Q 002446          293 GSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPG  372 (921)
Q Consensus       293 s~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~  372 (921)
                      -++     .                    +                                                  
T Consensus       208 ~d~-----~--------------------~--------------------------------------------------  212 (347)
T KOG0647|consen  208 QDK-----D--------------------G--------------------------------------------------  212 (347)
T ss_pred             ecC-----C--------------------c--------------------------------------------------
Confidence            100     0                    0                                                  


Q ss_pred             CCCCCcccCcccccCCCCEEEEEECCCC--ceEEEeccCCC---------CeEEEEECCCCCEEEEEecCCCEEEEEeCC
Q 002446          373 GKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFRAHKS---------PISALCFDPSGILLVTASVQGHNINIFKII  441 (921)
Q Consensus       373 ~k~~g~v~g~~~s~~~~G~V~IwDl~s~--~~l~~~~aH~~---------pIsaLaFSPdGtlLATaS~DGt~IrIWdi~  441 (921)
                                ++-+.-.|.|-|..+..+  +.-.+|+.|..         +|..|+|.|.-..|||++.||+ +..||-.
T Consensus       213 ----------~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkd  281 (347)
T KOG0647|consen  213 ----------FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKD  281 (347)
T ss_pred             ----------eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecch
Confidence                      000112355555555443  33446666652         5788999999889999999998 9999977


Q ss_pred             CCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEe
Q 002446          442 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS  488 (921)
Q Consensus       442 ~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS  488 (921)
                      ..              ..|++..  .....|.+.+|+.+|.++|-+.
T Consensus       282 ar--------------~kLk~s~--~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  282 AR--------------TKLKTSE--THPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             hh--------------hhhhccC--cCCCccceeEecCCCCEEEEEe
Confidence            53              2333322  2345699999999999998664

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.64  E-value=7.6e-16  Score=172.09  Aligned_cols=264  Identities=11%  Similarity=0.141  Sum_probs=189.3

Q ss_pred             CCCCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccC
Q 002446           83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~  162 (921)
                      .-.+|.+.|..++|=+  ..+   +.+|..|.++.+.||++-+.+.+...+..|..+|+.+++.+..             
T Consensus       209 ~~~gH~kgvsai~~fp--~~~---hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-------------  270 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFP--KKG---HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-------------  270 (503)
T ss_pred             eccCCccccchhhhcc--cee---eEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-------------
Confidence            3457888888888866  222   3455555577799999988788888999999999999886531             


Q ss_pred             CCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEc---CCEEE
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVA  239 (921)
Q Consensus       163 rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S---~riLA  239 (921)
                      +.+|.+..                                  +++|++||++||+++..++....++.|.|.   .+++.
T Consensus       271 ~~fLS~sf----------------------------------D~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl  316 (503)
T KOG0282|consen  271 TSFLSASF----------------------------------DRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFL  316 (503)
T ss_pred             Ceeeeeec----------------------------------ceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEE
Confidence            23333222                                  278999999999999999999999999995   25554


Q ss_pred             E-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccc
Q 002446          240 I-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF  318 (921)
Q Consensus       240 V-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~  318 (921)
                      + .++++|..||+++++.++.+..|-               +++-    -|-|-                          
T Consensus       317 ~G~sd~ki~~wDiRs~kvvqeYd~hL---------------g~i~----~i~F~--------------------------  351 (503)
T KOG0282|consen  317 VGGSDKKIRQWDIRSGKVVQEYDRHL---------------GAIL----DITFV--------------------------  351 (503)
T ss_pred             EecCCCcEEEEeccchHHHHHHHhhh---------------hhee----eeEEc--------------------------
Confidence            4 789999999999998665544331               1110    00010                          


Q ss_pred             cCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECC
Q 002446          319 ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV  398 (921)
Q Consensus       319 ~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~  398 (921)
                                                               +++                  ..|+++..++.|+||+..
T Consensus       352 -----------------------------------------~~g------------------~rFissSDdks~riWe~~  372 (503)
T KOG0282|consen  352 -----------------------------------------DEG------------------RRFISSSDDKSVRIWENR  372 (503)
T ss_pred             -----------------------------------------cCC------------------ceEeeeccCccEEEEEcC
Confidence                                                     000                  123445667899999999


Q ss_pred             CCceEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccccccc-EEEEE
Q 002446          399 SKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDIS  476 (921)
Q Consensus       399 s~~~l~~~~-aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~-I~sIa  476 (921)
                      ...++..+. .+.....||+..|+|.+++.=+-|.. |-||.+.+...            ...++..+||..+- -..|.
T Consensus       373 ~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r------------~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  373 IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFR------------LNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             CCccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccc------------cCHhhhhcceeccCceeeEE
Confidence            887765544 33456778999999999999999865 89999776411            11122234543322 45689


Q ss_pred             EccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          477 FSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       477 FSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      |||||++|++|+.||.+.+||-.+......+++|.....
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci  478 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI  478 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceE
Confidence            999999999999999999999999988889999965544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=3.9e-14  Score=151.75  Aligned_cols=230  Identities=19%  Similarity=0.286  Sum_probs=159.7

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      .++-.++.+.|-.   +.    .++..|.++.++++|++..  ....+..|+++|+|++..+.              +. 
T Consensus        52 ~~~~plL~c~F~d---~~----~~~~G~~dg~vr~~Dln~~--~~~~igth~~~i~ci~~~~~--------------~~-  107 (323)
T KOG1036|consen   52 KHGAPLLDCAFAD---ES----TIVTGGLDGQVRRYDLNTG--NEDQIGTHDEGIRCIEYSYE--------------VG-  107 (323)
T ss_pred             ecCCceeeeeccC---Cc----eEEEeccCceEEEEEecCC--cceeeccCCCceEEEEeecc--------------CC-
Confidence            4677899999976   33    7888888999999999983  44577889999999999852              11 


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEE-EeCC
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAI-CQAA  244 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S~riLAV-a~d~  244 (921)
                       .++.++|                               +++|+|||.+....+.++.-...|+++..++..|+| +.+.
T Consensus       108 -~vIsgsW-------------------------------D~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r  155 (323)
T KOG1036|consen  108 -CVISGSW-------------------------------DKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDR  155 (323)
T ss_pred             -eEEEccc-------------------------------CccEEEEeccccccccccccCceEEEEeccCCEEEEeecCc
Confidence             2344566                               278999999987777777777899999999888888 8899


Q ss_pred             EEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCC---ceecCCCccCCcccccccccccccCC
Q 002446          245 QVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSP---VVVSNDGRVNPQHLMQSRSFSGFASN  321 (921)
Q Consensus       245 ~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~---~~~s~~GrvsPq~l~~s~~~~~~~s~  321 (921)
                      +|.+||++++...++..+.+...          .+       |.++.-++.   +..+..||++-+.+.+++        
T Consensus       156 ~v~iyDLRn~~~~~q~reS~lky----------qt-------R~v~~~pn~eGy~~sSieGRVavE~~d~s~--------  210 (323)
T KOG1036|consen  156 KVLIYDLRNLDEPFQRRESSLKY----------QT-------RCVALVPNGEGYVVSSIEGRVAVEYFDDSE--------  210 (323)
T ss_pred             eEEEEEcccccchhhhcccccee----------EE-------EEEEEecCCCceEEEeecceEEEEccCCch--------
Confidence            99999999998776655543211          11       233322110   011233333222221110        


Q ss_pred             CcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCc
Q 002446          322 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN  401 (921)
Q Consensus       322 g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~  401 (921)
                                                +..                                                  +
T Consensus       211 --------------------------~~~--------------------------------------------------s  214 (323)
T KOG1036|consen  211 --------------------------EAQ--------------------------------------------------S  214 (323)
T ss_pred             --------------------------HHh--------------------------------------------------h
Confidence                                      000                                                  1


Q ss_pred             eEEEeccCC---------CCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccE
Q 002446          402 VIAQFRAHK---------SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVI  472 (921)
Q Consensus       402 ~l~~~~aH~---------~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I  472 (921)
                      ..-.|++|.         -||.+|+|+|--..||||+.||. |.+||+.+.              +.++.|++-.  ..|
T Consensus       215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~r--------------Krl~q~~~~~--~SI  277 (323)
T KOG1036|consen  215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNR--------------KRLKQLAKYE--TSI  277 (323)
T ss_pred             hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce-EEEccCcch--------------hhhhhccCCC--Cce
Confidence            112333332         28999999999888999999995 999999874              4566665432  239


Q ss_pred             EEEEEccCCCEEEEEeC
Q 002446          473 QDISFSDDSNWIMISSS  489 (921)
Q Consensus       473 ~sIaFSPDg~~LAsgS~  489 (921)
                      -+++|+.||..||++++
T Consensus       278 ~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  278 SSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEEEeccCCCeEEEEec
Confidence            99999999999999975

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.61  E-value=1.2e-12  Score=138.96  Aligned_cols=271  Identities=13%  Similarity=0.143  Sum_probs=155.8

Q ss_pred             EEEE-EccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccc
Q 002446          109 VLLL-GYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA  187 (921)
Q Consensus       109 vLll-G~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~  187 (921)
                      +++. +.++.+.+||+++ ++....+..+.+ ++.+.+.|+              ...|.++...               
T Consensus         3 ~~~s~~~d~~v~~~d~~t-~~~~~~~~~~~~-~~~l~~~~d--------------g~~l~~~~~~---------------   51 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTAT-LEVTRTFPVGQR-PRGITLSKD--------------GKLLYVCASD---------------   51 (300)
T ss_pred             EEEEecCCCEEEEEECCC-CceEEEEECCCC-CCceEECCC--------------CCEEEEEECC---------------
Confidence            4444 4466699999987 455555554333 455666553              1234333321               


Q ss_pred             cCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEE--eCCEEEEEECCCCcEEEEEecC
Q 002446          188 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILTN  263 (921)
Q Consensus       188 ~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVa--~d~~I~IwDl~T~~~l~tL~t~  263 (921)
                                       .++|++||+.+++.++.+.....+..+.++  ++.++++  .+++|++||+.+.+.+..+...
T Consensus        52 -----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~  114 (300)
T TIGR03866        52 -----------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG  114 (300)
T ss_pred             -----------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC
Confidence                             167999999999998888765556677775  4666553  4689999999998777666422


Q ss_pred             CCccCCCCCCCCCccccceeecC--ceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeE
Q 002446          264 PIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV  341 (921)
Q Consensus       264 p~~~g~p~~~g~~i~~~piAlgp--RwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~  341 (921)
                      ..             ...++++|  ++|+++...                          +..+..+.....+.+.  ..
T Consensus       115 ~~-------------~~~~~~~~dg~~l~~~~~~--------------------------~~~~~~~d~~~~~~~~--~~  153 (300)
T TIGR03866       115 VE-------------PEGMAVSPDGKIVVNTSET--------------------------TNMAHFIDTKTYEIVD--NV  153 (300)
T ss_pred             CC-------------cceEEECCCCCEEEEEecC--------------------------CCeEEEEeCCCCeEEE--EE
Confidence            11             11234433  455544211                          0000000000000000  00


Q ss_pred             ecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCC-----C--CeE
Q 002446          342 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-----S--PIS  414 (921)
Q Consensus       342 ~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~-----~--pIs  414 (921)
                      ..+..   .  .. ..+.|++               .  ..++....+|.|++||+.+++.+..+..+.     .  ...
T Consensus       154 ~~~~~---~--~~-~~~s~dg---------------~--~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  210 (300)
T TIGR03866       154 LVDQR---P--RF-AEFTADG---------------K--ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV  210 (300)
T ss_pred             EcCCC---c--cE-EEECCCC---------------C--EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence            00000   0  00 0000111               0  011334557899999999998877765332     1  234


Q ss_pred             EEEECCCCCEEEEE-ecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEE-eCCCc
Q 002446          415 ALCFDPSGILLVTA-SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS-SSRGT  492 (921)
Q Consensus       415 aLaFSPdGtlLATa-S~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsg-S~DgT  492 (921)
                      .++|+|||++++.+ ..+++ |.|||+.++              ..+..+..+   ..+.+++|+|||++|+++ ..+++
T Consensus       211 ~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~--------------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~  272 (300)
T TIGR03866       211 GIKLTKDGKTAFVALGPANR-VAVVDAKTY--------------EVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSND  272 (300)
T ss_pred             ceEECCCCCEEEEEcCCCCe-EEEEECCCC--------------cEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCe
Confidence            68999999986554 33444 899999765              222223222   248899999999999987 46999


Q ss_pred             EEEEecCCCCCceeecC
Q 002446          493 SHLFAINPLGGSVNFQP  509 (921)
Q Consensus       493 VhVWdi~~~g~~~~l~~  509 (921)
                      |+|||+.+......++.
T Consensus       273 i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       273 VSVIDVAALKVIKSIKV  289 (300)
T ss_pred             EEEEECCCCcEEEEEEc
Confidence            99999998765556654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=3.8e-14  Score=157.85  Aligned_cols=271  Identities=15%  Similarity=0.205  Sum_probs=177.1

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEee-ee--ecCCEEEEEEecCCCCCccccCccccC-
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLV-SR--YDGPVSFMQMLPRPITSKRSRDKFAEV-  162 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elv-S~--~dG~Vr~v~~lP~P~~~~~~~d~F~~~-  162 (921)
                      ....|..+.|-+   .   .+.+|+.|+++.++||.++-  ++...+ |-  ..-|+.++++.|+.     ..-.|... 
T Consensus       212 s~~~I~sv~FHp---~---~plllvaG~d~~lrifqvDG--k~N~~lqS~~l~~fPi~~a~f~p~G-----~~~i~~s~r  278 (514)
T KOG2055|consen  212 SHGGITSVQFHP---T---APLLLVAGLDGTLRIFQVDG--KVNPKLQSIHLEKFPIQKAEFAPNG-----HSVIFTSGR  278 (514)
T ss_pred             CcCCceEEEecC---C---CceEEEecCCCcEEEEEecC--ccChhheeeeeccCccceeeecCCC-----ceEEEeccc
Confidence            456699999988   3   36788889999999999984  454444 33  46899999999853     22333333 


Q ss_pred             CCEEEEEeCCCC----c---C---------CccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCC
Q 002446          163 RPLLVFCADGSR----S---C---------GTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS  226 (921)
Q Consensus       163 rPLLAvv~~g~~----~---g---------~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s  226 (921)
                      |+++-.-.-.+.    .   .         ..-++|+.-..++|             ..+.|.|...+|++.+++++.++
T Consensus       279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-------------~~G~I~lLhakT~eli~s~KieG  345 (514)
T KOG2055|consen  279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-------------NNGHIHLLHAKTKELITSFKIEG  345 (514)
T ss_pred             ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc-------------cCceEEeehhhhhhhhheeeecc
Confidence            333322211000    0   0         00001111111111             12679999999999999999999


Q ss_pred             CEEEEEEc---CCEEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCcccccee--ecCceEEecCCCceecCC
Q 002446          227 PIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA--VGPRWLAYSGSPVVVSND  301 (921)
Q Consensus       227 ~V~sV~~S---~riLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piA--lgpRwLAyas~~~~~s~~  301 (921)
                      .|.++.|+   +++++++..++|++||+++..+++.........           ...++  +.++|||           
T Consensus       346 ~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~-----------gts~~~S~ng~ylA-----------  403 (514)
T KOG2055|consen  346 VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVH-----------GTSLCISLNGSYLA-----------  403 (514)
T ss_pred             EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccc-----------eeeeeecCCCceEE-----------
Confidence            99999996   456777888999999999999888876531111           01122  1122222           


Q ss_pred             CccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccC
Q 002446          302 GRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNG  381 (921)
Q Consensus       302 GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g  381 (921)
                                                                                                      
T Consensus       404 --------------------------------------------------------------------------------  403 (514)
T KOG2055|consen  404 --------------------------------------------------------------------------------  403 (514)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCEEEEEECC------CCceEEEeccCCCCeEEEEECCCCCEEEEEecCCC-EEEEEeCCCCCCCCCCccCCC
Q 002446          382 HFPDADNVGMVIVRDIV------SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH-NINIFKIIPGILGTSSACDAG  454 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~------s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt-~IrIWdi~~g~~~~~s~~~~~  454 (921)
                         .+...|.|.|||..      +.+++..+..-+..|+.|+|+||+++||.||.... .+|+-.+..- .         
T Consensus       404 ---~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~-T---------  470 (514)
T KOG2055|consen  404 ---TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC-T---------  470 (514)
T ss_pred             ---eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce-e---------
Confidence               23445778888754      35678888888899999999999999999997432 3666655432 0         


Q ss_pred             CceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          455 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       455 ~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                        +-.-+-. ++..-..|+|++|||.|-|||.|..+|.++||.|+.|
T Consensus       471 --VFsNfP~-~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy  514 (514)
T KOG2055|consen  471 --VFSNFPT-SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY  514 (514)
T ss_pred             --eeccCCC-CCCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence              0000000 1222234999999999999999999999999999754

>PTZ00420 coronin; Provisional

Probab=99.60  E-value=5.4e-13  Score=158.14  Aligned_cols=220  Identities=10%  Similarity=0.101  Sum_probs=146.6

Q ss_pred             cEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcC
Q 002446          117 GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYH  196 (921)
Q Consensus       117 GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h  196 (921)
                      -+++|+.... .....+..|.++|.++++.|..             ..+||.++.          |              
T Consensus        55 vI~L~~~~r~-~~v~~L~gH~~~V~~lafsP~~-------------~~lLASgS~----------D--------------   96 (568)
T PTZ00420         55 AIRLENQMRK-PPVIKLKGHTSSILDLQFNPCF-------------SEILASGSE----------D--------------   96 (568)
T ss_pred             EEEeeecCCC-ceEEEEcCCCCCEEEEEEcCCC-------------CCEEEEEeC----------C--------------
Confidence            3688887653 3344567799999999998631             245665542          2              


Q ss_pred             CCCCCCCCCcEEEEEECCCCc--------EEEEEe-CCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCcEEEEEecC
Q 002446          197 DLGNGSSVPTVVHFYSLRSQS--------YVHMLK-FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEYAILTN  263 (921)
Q Consensus       197 ~~g~~~~~~~tVrIWDL~Tg~--------~V~tL~-f~s~V~sV~~S~---riLAV-a~d~~I~IwDl~T~~~l~tL~t~  263 (921)
                               ++|+|||+.++.        .+..+. +...|..|+|++   .+||+ +.|++|+|||+.+++....+. +
T Consensus        97 ---------gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~  166 (568)
T PTZ00420         97 ---------LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-M  166 (568)
T ss_pred             ---------CeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-c
Confidence                     789999998753        233444 467899999974   34555 678999999999998776654 2


Q ss_pred             CCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEec
Q 002446          264 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL  343 (921)
Q Consensus       264 p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~l  343 (921)
                      +.               .+    ..+++.             |.              |.                    
T Consensus       167 ~~---------------~V----~Slsws-------------pd--------------G~--------------------  180 (568)
T PTZ00420        167 PK---------------KL----SSLKWN-------------IK--------------GN--------------------  180 (568)
T ss_pred             CC---------------cE----EEEEEC-------------CC--------------CC--------------------
Confidence            11               01    112332             00              11                    


Q ss_pred             CCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEE-----EEE
Q 002446          344 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA-----LCF  418 (921)
Q Consensus       344 Gd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsa-----LaF  418 (921)
                                                            .++.+..++.|+|||+.+++.+.++.+|.+.+.+     ..|
T Consensus       181 --------------------------------------lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f  222 (568)
T PTZ00420        181 --------------------------------------LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL  222 (568)
T ss_pred             --------------------------------------EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence                                                  1122345789999999999999999999986543     346


Q ss_pred             CCCCCEEEEEecCC---CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 002446          419 DPSGILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL  495 (921)
Q Consensus       419 SPdGtlLATaS~DG---t~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhV  495 (921)
                      ++++.+|+|++.++   +.|+|||+... .          .......+..  ....+...-++++|.++++|+.|++|++
T Consensus       223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~-~----------~pl~~~~ld~--~~~~L~p~~D~~tg~l~lsGkGD~tIr~  289 (568)
T PTZ00420        223 GGDDNYILSTGFSKNNMREMKLWDLKNT-T----------SALVTMSIDN--ASAPLIPHYDESTGLIYLIGKGDGNCRY  289 (568)
T ss_pred             cCCCCEEEEEEcCCCCccEEEEEECCCC-C----------CceEEEEecC--CccceEEeeeCCCCCEEEEEECCCeEEE
Confidence            79999999988775   24999999853 0          1122223321  1222344444677999999999999999


Q ss_pred             EecCCC
Q 002446          496 FAINPL  501 (921)
Q Consensus       496 Wdi~~~  501 (921)
                      |++...
T Consensus       290 ~e~~~~  295 (568)
T PTZ00420        290 YQHSLG  295 (568)
T ss_pred             EEccCC
Confidence            999763

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.59  E-value=1.5e-13  Score=146.81  Aligned_cols=222  Identities=18%  Similarity=0.280  Sum_probs=161.8

Q ss_pred             CeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 002446          107 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT  186 (921)
Q Consensus       107 ~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~  186 (921)
                      ..++.+|.+..+++||+++ |.+..   +|.+--+|+-.++ |.           .|.+..+|++.              
T Consensus       103 s~i~S~gtDk~v~~wD~~t-G~~~r---k~k~h~~~vNs~~-p~-----------rrg~~lv~Sgs--------------  152 (338)
T KOG0265|consen  103 SHILSCGTDKTVRGWDAET-GKRIR---KHKGHTSFVNSLD-PS-----------RRGPQLVCSGS--------------  152 (338)
T ss_pred             CEEEEecCCceEEEEeccc-ceeee---hhccccceeeecC-cc-----------ccCCeEEEecC--------------
Confidence            5889999999999999998 44433   3444444444443 32           23444455542              


Q ss_pred             ccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEc---CCEEEEEeCCEEEEEECCCCcEEEEEecC
Q 002446          187 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTN  263 (921)
Q Consensus       187 ~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S---~riLAVa~d~~I~IwDl~T~~~l~tL~t~  263 (921)
                                       .++++|+||.++.+.++++.-+-++.+|.|+   .+++...-++.|++||++..+.++++.+|
T Consensus       153 -----------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh  215 (338)
T KOG0265|consen  153 -----------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH  215 (338)
T ss_pred             -----------------CCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecc
Confidence                             1289999999999999999888899999995   47777788999999999999999999887


Q ss_pred             CCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEec
Q 002446          264 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL  343 (921)
Q Consensus       264 p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~l  343 (921)
                      .++.            .-+++       +             |              +|+.                   
T Consensus       216 ~DtI------------t~lsl-------s-------------~--------------~gs~-------------------  230 (338)
T KOG0265|consen  216 ADTI------------TGLSL-------S-------------R--------------YGSF-------------------  230 (338)
T ss_pred             cCce------------eeEEe-------c-------------c--------------CCCc-------------------
Confidence            5421            00111       0             0              0100                   


Q ss_pred             CCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCC----CceEEEeccCCC----CeEE
Q 002446          344 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS----KNVIAQFRAHKS----PISA  415 (921)
Q Consensus       344 Gd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s----~~~l~~~~aH~~----pIsa  415 (921)
                                                             +.+-.-+.+|++||+.-    .+++..|.+|..    ....
T Consensus       231 ---------------------------------------llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~  271 (338)
T KOG0265|consen  231 ---------------------------------------LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK  271 (338)
T ss_pred             ---------------------------------------cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence                                                   00112356899999863    456888987754    3445


Q ss_pred             EEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 002446          416 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL  495 (921)
Q Consensus       416 LaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhV  495 (921)
                      .++||+++.+..+|.|.. +.|||....              ..+|+| -||.. .|.+++|.|.-.+|.++++|.||.+
T Consensus       272 cswsp~~~~i~ags~dr~-vyvwd~~~r--------------~~lykl-pGh~g-svn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  272 CSWSPNGTKITAGSADRF-VYVWDTTSR--------------RILYKL-PGHYG-SVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             eeccCCCCccccccccce-EEEeecccc--------------cEEEEc-CCcce-eEEEeeecCCCcEEEEeccCceeEe
Confidence            789999999999999964 899998763              567888 46654 4999999999999999999999987


Q ss_pred             E
Q 002446          496 F  496 (921)
Q Consensus       496 W  496 (921)
                      =
T Consensus       335 g  335 (338)
T KOG0265|consen  335 G  335 (338)
T ss_pred             e
Confidence            3

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.59  E-value=3.2e-13  Score=152.40  Aligned_cols=108  Identities=19%  Similarity=0.254  Sum_probs=91.4

Q ss_pred             cccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          384 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      +++..|+.|.+|+-.-.+-..+++.|..=|.|+.|||||.++||++.||+ |.|||-.++              ..+..|
T Consensus       164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGktg--------------e~vg~l  228 (603)
T KOG0318|consen  164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGKTG--------------EKVGEL  228 (603)
T ss_pred             EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCCCc--------------cEEEEe
Confidence            45677889999987777778899999999999999999999999999998 899998876              456666


Q ss_pred             e--cccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          464 Q--RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       464 ~--RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                      .  .+|. ..|+.|+||||++.|+++|.|.|++|||+++.....++
T Consensus       229 ~~~~aHk-GsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~  273 (603)
T KOG0318|consen  229 EDSDAHK-GSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW  273 (603)
T ss_pred             cCCCCcc-ccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence            4  1322 34999999999999999999999999999987555444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.58  E-value=1.7e-14  Score=158.94  Aligned_cols=253  Identities=11%  Similarity=0.120  Sum_probs=177.6

Q ss_pred             CCCCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCC-CeEEeeeeecCCEEEEEEecCCCCCccccCcccc
Q 002446           83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~-~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~  161 (921)
                      ..+.|..+|.-+.|-.   +.+   .+..-|.+.-+++|++.... +....++...|++..+.+=+.             
T Consensus       170 ~ld~h~gev~~v~~l~---~sd---tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~-------------  230 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLR---NSD---TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD-------------  230 (459)
T ss_pred             hhhccccccceeEEcc---Ccc---hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC-------------
Confidence            3456677777888866   322   56677778889999998632 133345556677777766321             


Q ss_pred             CCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEcC---CE
Q 002446          162 VRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RV  237 (921)
Q Consensus       162 ~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~---ri  237 (921)
                      .+-.||..                                  .++.+++|++.+.+..++|.. ...|.++.|..   ++
T Consensus       231 ~~~~iAas----------------------------------~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~v  276 (459)
T KOG0288|consen  231 NKHVIAAS----------------------------------NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRV  276 (459)
T ss_pred             CceEEeec----------------------------------CCCceeeeeccchhhhhhhcccccceeeehhhccccce
Confidence            11233211                                  125699999999999999985 56999999952   33


Q ss_pred             EEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccccccccc
Q 002446          238 VAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSG  317 (921)
Q Consensus       238 LAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~  317 (921)
                      |-.+.|.+|++||+....|..++..-..             .+.|.++                     +          
T Consensus       277 Vsgs~DRtiK~WDl~k~~C~kt~l~~S~-------------cnDI~~~---------------------~----------  312 (459)
T KOG0288|consen  277 VSGSADRTIKLWDLQKAYCSKTVLPGSQ-------------CNDIVCS---------------------I----------  312 (459)
T ss_pred             eeccccchhhhhhhhhhheecccccccc-------------ccceEec---------------------c----------
Confidence            3337788999999998776655432110             1111110                     0          


Q ss_pred             ccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEEC
Q 002446          318 FASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDI  397 (921)
Q Consensus       318 ~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl  397 (921)
                                                                                     -.+.++..+++|+.||+
T Consensus       313 ---------------------------------------------------------------~~~~SgH~DkkvRfwD~  329 (459)
T KOG0288|consen  313 ---------------------------------------------------------------SDVISGHFDKKVRFWDI  329 (459)
T ss_pred             ---------------------------------------------------------------eeeeecccccceEEEec
Confidence                                                                           01123456788999999


Q ss_pred             CCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEE
Q 002446          398 VSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF  477 (921)
Q Consensus       398 ~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaF  477 (921)
                      .+..+......|. .|++|..+++|..|.+++.|.+ ++++|+.+.            ...+.|.-.--.+...++.+.|
T Consensus       330 Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~------------eI~~~~sA~g~k~asDwtrvvf  395 (459)
T KOG0288|consen  330 RSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT-LKVIDLRTK------------EIRQTFSAEGFKCASDWTRVVF  395 (459)
T ss_pred             cCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc-eeeeecccc------------cEEEEeeccccccccccceeEE
Confidence            9999999999886 9999999999999999999976 899999875            2344443321122334889999


Q ss_pred             ccCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 002446          478 SDDSNWIMISSSRGTSHLFAINPLGGSVNFQP  509 (921)
Q Consensus       478 SPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~  509 (921)
                      |||+.|+|+||.||.|+||++.+++....+..
T Consensus       396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~  427 (459)
T KOG0288|consen  396 SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL  427 (459)
T ss_pred             CCCCceeeeccCCCcEEEEEccCceEEEEecc
Confidence            99999999999999999999998877666644

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=6.3e-14  Score=146.89  Aligned_cols=231  Identities=15%  Similarity=0.220  Sum_probs=161.3

Q ss_pred             cCcEEEEEccCCCCeEEeeee-ecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCC
Q 002446          115 RSGFQVWDVEEADNVHDLVSR-YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSA  193 (921)
Q Consensus       115 ~~GfqVWDv~~~~~~~elvS~-~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~  193 (921)
                      .+.+-|.++++...++|..+- ....+..++..++.            +.-+++.++|                      
T Consensus        37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~------------e~~~~~a~GD----------------------   82 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH------------ENQVIAASGD----------------------   82 (311)
T ss_pred             CceEEEEecCCCCCeEEEEeeecccceeEeeecCCC------------cceEEEEecC----------------------
Confidence            445778888766778887763 45677888887642            2234454444                      


Q ss_pred             CcCCCCCCCCCCcEEEEEECCC-CcEEEEEe-CCCCEEEEEEc---CCE-EEEEeCCEEEEEECCCCcEEEEEecCCCcc
Q 002446          194 NYHDLGNGSSVPTVVHFYSLRS-QSYVHMLK-FRSPIYSVRCS---SRV-VAICQAAQVHCFDAATLEIEYAILTNPIVM  267 (921)
Q Consensus       194 ~~h~~g~~~~~~~tVrIWDL~T-g~~V~tL~-f~s~V~sV~~S---~ri-LAVa~d~~I~IwDl~T~~~l~tL~t~p~~~  267 (921)
                                  +++||||+.- ...++.++ +...|++|.++   ++. |..+-|++|++||..-.+-+.|..+|.+  
T Consensus        83 ------------GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~--  148 (311)
T KOG0277|consen   83 ------------GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS--  148 (311)
T ss_pred             ------------ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc--
Confidence                        4599999643 24566654 57899999997   333 4447899999999988777777665421  


Q ss_pred             CCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCcc
Q 002446          268 GHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLG  347 (921)
Q Consensus       268 g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g  347 (921)
                                           +.|..    .+     +|.                                        
T Consensus       149 ---------------------~Iy~a----~~-----sp~----------------------------------------  158 (311)
T KOG0277|consen  149 ---------------------CIYQA----AF-----SPH----------------------------------------  158 (311)
T ss_pred             ---------------------EEEEE----ec-----CCC----------------------------------------
Confidence                                 12220    00     010                                        


Q ss_pred             ccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECC-CCCEEE
Q 002446          348 YKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLV  426 (921)
Q Consensus       348 ~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSP-dGtlLA  426 (921)
                                                     ..+.++++..+|+.++||++....-..|.+|...|.|+.|+. +-.+||
T Consensus       159 -------------------------------~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~  207 (311)
T KOG0277|consen  159 -------------------------------IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA  207 (311)
T ss_pred             -------------------------------CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence                                           001234456689999999986443344999999999999998 677999


Q ss_pred             EEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccC-CCEEEEEeCCCcEEEEecCCCCCce
Q 002446          427 TASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGSV  505 (921)
Q Consensus       427 TaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPD-g~~LAsgS~DgTVhVWdi~~~g~~~  505 (921)
                      |++.|+. ||+||+..-             ..++.+| .||.-| |..|+|||- ...||++|-|.|++|||........
T Consensus       208 Tg~vd~~-vr~wDir~~-------------r~pl~eL-~gh~~A-VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~  271 (311)
T KOG0277|consen  208 TGGVDNL-VRGWDIRNL-------------RTPLFEL-NGHGLA-VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI  271 (311)
T ss_pred             ecCCCce-EEEEehhhc-------------cccceee-cCCceE-EEEEecCcchhhHhhhccccceEEecccccchhhh
Confidence            9999985 999999874             2456777 566655 999999995 5689999999999999998554443


Q ss_pred             -eecCC
Q 002446          506 -NFQPT  510 (921)
Q Consensus       506 -~l~~H  510 (921)
                       +..-|
T Consensus       272 e~~~~H  277 (311)
T KOG0277|consen  272 ETVDHH  277 (311)
T ss_pred             hhhhcc
Confidence             44444

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.57  E-value=6.2e-14  Score=156.13  Aligned_cols=107  Identities=14%  Similarity=0.309  Sum_probs=88.8

Q ss_pred             ccccCCCCEEEEEECC--CCceEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 002446          383 FPDADNVGMVIVRDIV--SKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH  459 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~--s~~~l~~~~aH~~pIsaLaFSP-dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~  459 (921)
                      |.+.+.++.+.|||++  +.++....++|+.+|.|++|+| ++.+|||||.|+| +++||+..-             ...
T Consensus       243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL-------------~~~  308 (422)
T KOG0264|consen  243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNL-------------NKP  308 (422)
T ss_pred             heeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhc-------------ccC
Confidence            4456778999999999  5667778889999999999999 6789999999998 899999874             235


Q ss_pred             EEEEecccccccEEEEEEccC-CCEEEEEeCCCcEEEEecCCCCCce
Q 002446          460 LYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGSV  505 (921)
Q Consensus       460 l~~l~RG~t~a~I~sIaFSPD-g~~LAsgS~DgTVhVWdi~~~g~~~  505 (921)
                      ++++. ||. ..|..|.|||+ ...||+++.|+.++|||+..-++..
T Consensus       309 lh~~e-~H~-dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  309 LHTFE-GHE-DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             ceecc-CCC-cceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence            66763 543 45999999995 5688999999999999998866654

>PTZ00420 coronin; Provisional

Probab=99.56  E-value=1.8e-12  Score=153.69  Aligned_cols=127  Identities=13%  Similarity=0.270  Sum_probs=95.5

Q ss_pred             CCCCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCCC-------eEEeeeeecCCEEEEEEecCCCCCcccc
Q 002446           85 ESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADN-------VHDLVSRYDGPVSFMQMLPRPITSKRSR  156 (921)
Q Consensus        85 ~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~~-------~~elvS~~dG~Vr~v~~lP~P~~~~~~~  156 (921)
                      .+|++.|..+.|+.   +.   ..+|+.|. ++.++|||+.+.+.       ....+..|.+.|.++.+.|..       
T Consensus        71 ~gH~~~V~~lafsP---~~---~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g-------  137 (568)
T PTZ00420         71 KGHTSSILDLQFNP---CF---SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN-------  137 (568)
T ss_pred             cCCCCCEEEEEEcC---CC---CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC-------
Confidence            46899999999987   42   13555555 66689999976332       122456788999999997731       


Q ss_pred             CccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEc--
Q 002446          157 DKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--  234 (921)
Q Consensus       157 d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S--  234 (921)
                            ..+|+.++.          |                       ++|+|||+++++.+..+.+...|.++.|+  
T Consensus       138 ------~~iLaSgS~----------D-----------------------gtIrIWDl~tg~~~~~i~~~~~V~Slswspd  178 (568)
T PTZ00420        138 ------YYIMCSSGF----------D-----------------------SFVNIWDIENEKRAFQINMPKKLSSLKWNIK  178 (568)
T ss_pred             ------CeEEEEEeC----------C-----------------------CeEEEEECCCCcEEEEEecCCcEEEEEECCC
Confidence                  123443332          2                       67999999999999888888899999996  


Q ss_pred             CCEEEE-EeCCEEEEEECCCCcEEEEEecC
Q 002446          235 SRVVAI-CQAAQVHCFDAATLEIEYAILTN  263 (921)
Q Consensus       235 ~riLAV-a~d~~I~IwDl~T~~~l~tL~t~  263 (921)
                      +++|++ +.+++|+|||+++++.+.++..|
T Consensus       179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             CCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            578876 56889999999999988888766

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.56  E-value=1.6e-12  Score=152.81  Aligned_cols=119  Identities=22%  Similarity=0.285  Sum_probs=89.3

Q ss_pred             CCCCEEEEEECCCCceEEEe---ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCC------CCCCcc------
Q 002446          387 DNVGMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL------GTSSAC------  451 (921)
Q Consensus       387 ~~~G~V~IwDl~s~~~l~~~---~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~------~~~s~~------  451 (921)
                      ...|+|.+|++++|-....|   ++|..+|+.|+.+--++++++|+.+|. ++.||......      +++...      
T Consensus       467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr~  545 (910)
T KOG1539|consen  467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHRV  545 (910)
T ss_pred             ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeeeeh
Confidence            34689999999999988888   699999999999999999999999996 89999987521      111000      


Q ss_pred             ------CCCCceeEEE--------EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          452 ------DAGTSYVHLY--------RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       452 ------~~~~~~~~l~--------~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                            .-..-...++        +-.+||+ .+|++++|||||+||+++++|+||++||+.+....-.+
T Consensus       546 s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~-nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  546 SDLLAIALDDFSIRVVDVVTRKVVREFWGHG-NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             hhhhhhhcCceeEEEEEchhhhhhHHhhccc-cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence                  0000001111        1125654 57999999999999999999999999999886554444

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.56  E-value=7.5e-13  Score=155.59  Aligned_cols=101  Identities=21%  Similarity=0.349  Sum_probs=85.6

Q ss_pred             cccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY  461 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~  461 (921)
                      .++.+..+-.|+|+|..+.+++..|.+|+..|++++|||||++|++|+-|++ ||+||+.++              .++-
T Consensus       548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt~--------------~lID  612 (910)
T KOG1539|consen  548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPTG--------------TLID  612 (910)
T ss_pred             hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccCc--------------ceee
Confidence            4455566778999999999999999999999999999999999999999998 999999986              2333


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCC-CcEEEEecCC
Q 002446          462 RLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINP  500 (921)
Q Consensus       462 ~l~RG~t~a~I~sIaFSPDg~~LAsgS~D-gTVhVWdi~~  500 (921)
                      -+.   ......+++|||+|.+||++..| .-|.+|.-..
T Consensus       613 ~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  613 GLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             eEe---cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            332   23458899999999999999998 6799997543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=3.2e-13  Score=155.53  Aligned_cols=240  Identities=16%  Similarity=0.206  Sum_probs=175.9

Q ss_pred             CCcEEEEEEecccCCCCCCCeEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEE
Q 002446           88 HDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLL  166 (921)
Q Consensus        88 kd~V~w~~Fd~~~~d~~~~~~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLL  166 (921)
                      .+.|+.+.|++   +|    ..|++|+.+| ++|||++....++.+...|.+.|.+++.-.                 .+
T Consensus       217 ~~~vtSv~ws~---~G----~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~-----------------~~  272 (484)
T KOG0305|consen  217 EELVTSVKWSP---DG----SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS-----------------SV  272 (484)
T ss_pred             CCceEEEEECC---CC----CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC-----------------ce
Confidence            89999999999   77    7999999888 699999986656555555888888887642                 23


Q ss_pred             EEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEE-Ee-CCCCEEEEEEc--CCEEEE-E
Q 002446          167 VFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHM-LK-FRSPIYSVRCS--SRVVAI-C  241 (921)
Q Consensus       167 Avv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~t-L~-f~s~V~sV~~S--~riLAV-a  241 (921)
                      ..++..         |                       +.|.++|++..+.... ++ +...|+.++++  .+.+|. .
T Consensus       273 lssGsr---------~-----------------------~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGg  320 (484)
T KOG0305|consen  273 LSSGSR---------D-----------------------GKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGG  320 (484)
T ss_pred             EEEecC---------C-----------------------CcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCC
Confidence            333321         1                       5689999998876555 55 57899999997  588998 7


Q ss_pred             eCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCC
Q 002446          242 QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN  321 (921)
Q Consensus       242 ~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~  321 (921)
                      .|+.++|||..+.+.++++..|...               +    +-||++             |.+             
T Consensus       321 nDN~~~Iwd~~~~~p~~~~~~H~aA---------------V----KA~awc-------------P~q-------------  355 (484)
T KOG0305|consen  321 NDNVVFIWDGLSPEPKFTFTEHTAA---------------V----KALAWC-------------PWQ-------------  355 (484)
T ss_pred             CccceEeccCCCccccEEEecccee---------------e----eEeeeC-------------CCc-------------
Confidence            8899999999888888888877321               1    123443             110             


Q ss_pred             CcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCc
Q 002446          322 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN  401 (921)
Q Consensus       322 g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~  401 (921)
                      ..+           ||.                                             ..+..|+.|++||..+++
T Consensus       356 ~~l-----------LAs---------------------------------------------GGGs~D~~i~fwn~~~g~  379 (484)
T KOG0305|consen  356 SGL-----------LAT---------------------------------------------GGGSADRCIKFWNTNTGA  379 (484)
T ss_pred             cCc-----------eEE---------------------------------------------cCCCcccEEEEEEcCCCc
Confidence            000           110                                             013457899999999999


Q ss_pred             eEEEeccCCCCeEEEEECCCCCEEEEEe-cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccC
Q 002446          402 VIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD  480 (921)
Q Consensus       402 ~l~~~~aH~~pIsaLaFSPdGtlLATaS-~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPD  480 (921)
                      .+..+... +.|+.|.|++..+-|+++- .-...|.||+..+-              ..+..+ -||+ .+|..+++|||
T Consensus       380 ~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~--------------~~~~~l-~gH~-~RVl~la~SPd  442 (484)
T KOG0305|consen  380 RIDSVDTG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM--------------KLVAEL-LGHT-SRVLYLALSPD  442 (484)
T ss_pred             EecccccC-CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc--------------ceeeee-cCCc-ceeEEEEECCC
Confidence            88777644 5799999999987666653 22235999998763              233333 4654 56999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCC
Q 002446          481 SNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       481 g~~LAsgS~DgTVhVWdi~~~  501 (921)
                      |+.+++|+.|.|+++|++-+.
T Consensus       443 g~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  443 GETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCEEEEecccCcEEeccccCC
Confidence            999999999999999999775

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.55  E-value=1.6e-13  Score=153.83  Aligned_cols=246  Identities=17%  Similarity=0.223  Sum_probs=175.8

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      ...+.|..++|.+   ..   +.=+++...-++|||+...- .+.+.+++=+..|..+.+-              ...-|
T Consensus        24 ke~~~vssl~fsp---~~---P~d~aVt~S~rvqly~~~~~-~~~k~~srFk~~v~s~~fR--------------~DG~L   82 (487)
T KOG0310|consen   24 KEHNSVSSLCFSP---KH---PYDFAVTSSVRVQLYSSVTR-SVRKTFSRFKDVVYSVDFR--------------SDGRL   82 (487)
T ss_pred             cccCcceeEecCC---CC---CCceEEecccEEEEEecchh-hhhhhHHhhccceeEEEee--------------cCCeE
Confidence            4567799999988   22   34577777899999999873 4566677767777777653              33456


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-CCCCEEEEEEcC---CEEEEE
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS---RVVAIC  241 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S~---riLAVa  241 (921)
                      ||+++. +                                +.|+++|+++...++.++ +..+|..+.|++   .+++.+
T Consensus        83 laaGD~-s--------------------------------G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~  129 (487)
T KOG0310|consen   83 LAAGDE-S--------------------------------GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSG  129 (487)
T ss_pred             EEccCC-c--------------------------------CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEec
Confidence            654432 2                                679999988866666665 467999999973   455554


Q ss_pred             -eCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccC
Q 002446          242 -QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS  320 (921)
Q Consensus       242 -~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s  320 (921)
                       .+..+++||+.+......+.+|.+..                   |..++.             |.             
T Consensus       130 sDd~v~k~~d~s~a~v~~~l~~htDYV-------------------R~g~~~-------------~~-------------  164 (487)
T KOG0310|consen  130 SDDKVVKYWDLSTAYVQAELSGHTDYV-------------------RCGDIS-------------PA-------------  164 (487)
T ss_pred             CCCceEEEEEcCCcEEEEEecCCccee-------------------Eeeccc-------------cC-------------
Confidence             45689999999988644666654311                   111111             00             


Q ss_pred             CCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccC-cccccCCCCEEEEEECCC
Q 002446          321 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNG-HFPDADNVGMVIVRDIVS  399 (921)
Q Consensus       321 ~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g-~~~s~~~~G~V~IwDl~s  399 (921)
                                                                                 ++ .++++++||+|++||+.+
T Consensus       165 -----------------------------------------------------------~~hivvtGsYDg~vrl~DtR~  185 (487)
T KOG0310|consen  165 -----------------------------------------------------------NDHIVVTGSYDGKVRLWDTRS  185 (487)
T ss_pred             -----------------------------------------------------------CCeEEEecCCCceEEEEEecc
Confidence                                                                       01 134678999999999998


Q ss_pred             C-ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEc
Q 002446          400 K-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS  478 (921)
Q Consensus       400 ~-~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFS  478 (921)
                      . ..+.+| .|..||..+.|=|+|.++|||+  |..|+|||+.+|             ++.++.+  ..++..|+|+++.
T Consensus       186 ~~~~v~el-nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G-------------~qll~~~--~~H~KtVTcL~l~  247 (487)
T KOG0310|consen  186 LTSRVVEL-NHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTG-------------GQLLTSM--FNHNKTVTCLRLA  247 (487)
T ss_pred             CCceeEEe-cCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCC-------------ceehhhh--hcccceEEEEEee
Confidence            7 444444 5889999999999999999998  557999999976             2333333  2233459999999


Q ss_pred             cCCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          479 DDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       479 PDg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                      .|++.|.++|.|+.|+|||+..++-...+
T Consensus       248 s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~  276 (487)
T KOG0310|consen  248 SDSTRLLSGSLDRHVKVFDTTNYKVVHSW  276 (487)
T ss_pred             cCCceEeecccccceEEEEccceEEEEee
Confidence            99999999999999999998887554444

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=2.7e-12  Score=132.59  Aligned_cols=257  Identities=16%  Similarity=0.219  Sum_probs=177.3

Q ss_pred             CCCCCCcEEEEEEecccCCCCCCCeEEEEEccCc-EEEEEccC--CCCe-EE-eeeeecCCEEEEEEecCCCCCccccCc
Q 002446           84 DESSHDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEE--ADNV-HD-LVSRYDGPVSFMQMLPRPITSKRSRDK  158 (921)
Q Consensus        84 ~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~G-fqVWDv~~--~~~~-~e-lvS~~dG~Vr~v~~lP~P~~~~~~~d~  158 (921)
                      .--||..|.+++|.+   +|    .+|+.|.++. +++.-.+.  ...+ .+ -++-|||.||.+.++..|...      
T Consensus        85 ~khhkgsiyc~~ws~---~g----eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~------  151 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSP---CG----ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESG------  151 (350)
T ss_pred             ccccCccEEEEEecC---cc----CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcC------
Confidence            345788999999998   56    6899998654 67665443  1111 12 257899999999999776432      


Q ss_pred             cccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEE-cCC
Q 002446          159 FAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRC-SSR  236 (921)
Q Consensus       159 F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~-S~r  236 (921)
                          ..+|+..+.|                                +|.|.+-|-.+|+..+.+.. ...|.++-. |+-
T Consensus       152 ----~~il~s~gag--------------------------------dc~iy~tdc~~g~~~~a~sghtghilalyswn~~  195 (350)
T KOG0641|consen  152 ----GAILASAGAG--------------------------------DCKIYITDCGRGQGFHALSGHTGHILALYSWNGA  195 (350)
T ss_pred             ----ceEEEecCCC--------------------------------cceEEEeecCCCCcceeecCCcccEEEEEEecCc
Confidence                2455433321                                28899999999999999875 568887755 677


Q ss_pred             EEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccccccc
Q 002446          237 VVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSF  315 (921)
Q Consensus       237 iLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~  315 (921)
                      ++|. +++.+|++||++-..+..++.+.-     .+ +|  +....++    -+|..       .+||            
T Consensus       196 m~~sgsqdktirfwdlrv~~~v~~l~~~~-----~~-~g--lessava----av~vd-------psgr------------  244 (350)
T KOG0641|consen  196 MFASGSQDKTIRFWDLRVNSCVNTLDNDF-----HD-GG--LESSAVA----AVAVD-------PSGR------------  244 (350)
T ss_pred             EEEccCCCceEEEEeeeccceeeeccCcc-----cC-CC--cccceeE----EEEEC-------CCcc------------
Confidence            7777 788999999999888877775421     00 00  1111111    00000       0000            


Q ss_pred             ccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEE
Q 002446          316 SGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVR  395 (921)
Q Consensus       316 ~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~Iw  395 (921)
                                                                                        .++++..+....+|
T Consensus       245 ------------------------------------------------------------------ll~sg~~dssc~ly  258 (350)
T KOG0641|consen  245 ------------------------------------------------------------------LLASGHADSSCMLY  258 (350)
T ss_pred             ------------------------------------------------------------------eeeeccCCCceEEE
Confidence                                                                              12334556678999


Q ss_pred             ECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEE
Q 002446          396 DIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI  475 (921)
Q Consensus       396 Dl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sI  475 (921)
                      |+..++.+..|..|+..|.|+.|||...+|.|||.|-. |++-|+.-..            .+.+-.+--+.+..++-.+
T Consensus       259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqgdl------------a~el~~~vv~ehkdk~i~~  325 (350)
T KOG0641|consen  259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQGDL------------AHELPIMVVAEHKDKAIQC  325 (350)
T ss_pred             EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecccch------------hhcCceEEEEeccCceEEE
Confidence            99999999999999999999999999999999999975 9999987531            0111111112233345568


Q ss_pred             EEccCCCEEEEEeCCCcEEEEecC
Q 002446          476 SFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       476 aFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                      -|.|..--|.+.|.|.|+.+|.++
T Consensus       326 rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  326 RWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EecCccceeeeccCcceEEEeccC
Confidence            999999889999999999999875

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.55  E-value=9.5e-14  Score=167.23  Aligned_cols=169  Identities=12%  Similarity=0.185  Sum_probs=126.0

Q ss_pred             CCCEEEEEECCC------------CceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCC--
Q 002446          388 NVGMVIVRDIVS------------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA--  453 (921)
Q Consensus       388 ~~G~V~IwDl~s------------~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~--  453 (921)
                      .||.++||..+.            .+.+.++..|.++|+|+.|+|||++||+||+|+ .|-||+-.+.  +.++.++.  
T Consensus        35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~-~v~iW~~~~~--~~~~~fgs~g  111 (942)
T KOG0973|consen   35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR-LVMIWERAEI--GSGTVFGSTG  111 (942)
T ss_pred             ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc-eEEEeeeccc--CCcccccccc
Confidence            567777998652            356788899999999999999999999999996 5999998852  11111211  


Q ss_pred             ---CCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCccc--------------
Q 002446          454 ---GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTT--------------  516 (921)
Q Consensus       454 ---~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~~--------------  516 (921)
                         ..+.+..+...|||. ..|++++||||+.|||++|.|++|+||+..+++....+++|.+.+..              
T Consensus       112 ~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqs  190 (942)
T KOG0973|consen  112 GAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQS  190 (942)
T ss_pred             cccccceeeEEEEEecCC-CccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeec
Confidence               122333444457864 57999999999999999999999999999999777788898776442              


Q ss_pred             ----------------------ccCCcCCccccCCCCCCCCCCCCcccccCCC---ceeeeeeeEEecCCCCCCccc
Q 002446          517 ----------------------KHGAMAKSGVRWPPNLGLQMPNQQSLCASGP---PVTLSVVSRIRNGNNGWRGTV  568 (921)
Q Consensus       517 ----------------------~~~~~~~~~~r~~~~s~l~~~~~~~l~~~~~---pv~ls~v~rI~~~~~~w~~~v  568 (921)
                                            |...+..+.|++..||    ||++.|+.+++   |+  +.++.|.+++  |..++
T Consensus       191 dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS----PDG~~las~nA~n~~~--~~~~IieR~t--Wk~~~  259 (942)
T KOG0973|consen  191 DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS----PDGHHLASPNAVNGGK--STIAIIERGT--WKVDK  259 (942)
T ss_pred             CCceEEEEEcccceeeEeeccchhhCCCcceeeecccC----CCcCeecchhhccCCc--ceeEEEecCC--ceeee
Confidence                                  2234455566666555    99999987764   77  7788888855  97653

>PTZ00421 coronin; Provisional

Probab=99.55  E-value=2.6e-12  Score=150.81  Aligned_cols=128  Identities=12%  Similarity=0.221  Sum_probs=95.5

Q ss_pred             CCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCC------CeEEeeeeecCCEEEEEEecCCCCCccccCc
Q 002446           85 ESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEAD------NVHDLVSRYDGPVSFMQMLPRPITSKRSRDK  158 (921)
Q Consensus        85 ~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~------~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~  158 (921)
                      .+|.+.|..+.|+..  ++   ..++..+.++.++|||+.+.+      +....+..|...|.++++.|..         
T Consensus        72 ~GH~~~V~~v~fsP~--d~---~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~---------  137 (493)
T PTZ00421         72 LGQEGPIIDVAFNPF--DP---QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA---------  137 (493)
T ss_pred             eCCCCCEEEEEEcCC--CC---CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC---------
Confidence            468999999999872  22   244445556679999998642      1234466788999999997631         


Q ss_pred             cccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-CCCCEEEEEEc--C
Q 002446          159 FAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--S  235 (921)
Q Consensus       159 F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S--~  235 (921)
                          ..+|+.++.          |                       ++|+|||+.+++.+..++ +...|.+|+|+  +
T Consensus       138 ----~~iLaSgs~----------D-----------------------gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG  180 (493)
T PTZ00421        138 ----MNVLASAGA----------D-----------------------MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG  180 (493)
T ss_pred             ----CCEEEEEeC----------C-----------------------CEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence                245654442          2                       789999999999999887 46789999997  5


Q ss_pred             CEEEE-EeCCEEEEEECCCCcEEEEEecC
Q 002446          236 RVVAI-CQAAQVHCFDAATLEIEYAILTN  263 (921)
Q Consensus       236 riLAV-a~d~~I~IwDl~T~~~l~tL~t~  263 (921)
                      ++|++ +.|++|+|||+++++.+.++..|
T Consensus       181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H  209 (493)
T PTZ00421        181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAH  209 (493)
T ss_pred             CEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence            67766 67899999999999988877655

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=1.2e-13  Score=162.44  Aligned_cols=202  Identities=14%  Similarity=0.198  Sum_probs=149.2

Q ss_pred             cEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccc
Q 002446          206 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP  281 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~p  281 (921)
                      ++|++||.+-+.+++.+. +.++|+.|.|-  ..+++. +.|.+|++|+..+-+|+++|.+|-+.               
T Consensus        31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY---------------   95 (1202)
T KOG0292|consen   31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY---------------   95 (1202)
T ss_pred             ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce---------------
Confidence            679999999999999874 68999999995  345555 55679999999999999999987431               


Q ss_pred             eeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCC
Q 002446          282 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD  361 (921)
Q Consensus       282 iAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~  361 (921)
                      +    |.+.|...-          |                                                       
T Consensus        96 V----Rt~~FHhey----------P-------------------------------------------------------  106 (1202)
T KOG0292|consen   96 V----RTVFFHHEY----------P-------------------------------------------------------  106 (1202)
T ss_pred             e----EEeeccCCC----------c-------------------------------------------------------
Confidence            1    233332100          0                                                       


Q ss_pred             CcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCC
Q 002446          362 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII  441 (921)
Q Consensus       362 ~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~  441 (921)
                                          -+.++..|.+|+||+.+++++++.+.+|.+-|.|..|.|...++++||-|.| |||||+.
T Consensus       107 --------------------WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT-VRVWDis  165 (1202)
T KOG0292|consen  107 --------------------WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT-VRVWDIS  165 (1202)
T ss_pred             --------------------eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce-EEEEeec
Confidence                                0123456789999999999999999999999999999999999999999987 9999996


Q ss_pred             CCCC-----C--------C---CCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC--
Q 002446          442 PGIL-----G--------T---SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG--  503 (921)
Q Consensus       442 ~g~~-----~--------~---~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~--  503 (921)
                      --..     +        .   ...++....+ -.+.| .||+.. |+-+||.|.-..|++|++|+-|++|.++..+-  
T Consensus       166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV-VK~VL-EGHDRG-VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE  242 (1202)
T KOG0292|consen  166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV-VKHVL-EGHDRG-VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE  242 (1202)
T ss_pred             chhccCCCCCCchhhhhccccchhhcCCcCee-eeeee-cccccc-cceEEecCCcceEEecCCcceeeEEEecccccee
Confidence            4211     1        0   0011111121 11333 476654 89999999999999999999999999987543  


Q ss_pred             ceeecCCCCCcc
Q 002446          504 SVNFQPTDANFT  515 (921)
Q Consensus       504 ~~~l~~H~~~~~  515 (921)
                      .-+.++|.+++.
T Consensus       243 vDtcrgH~nnVs  254 (1202)
T KOG0292|consen  243 VDTCRGHYNNVS  254 (1202)
T ss_pred             ehhhhcccCCcc
Confidence            224467766654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=8.8e-13  Score=141.70  Aligned_cols=97  Identities=21%  Similarity=0.292  Sum_probs=66.8

Q ss_pred             eEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCC----------CCCC---------------c----cC
Q 002446          402 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL----------GTSS---------------A----CD  452 (921)
Q Consensus       402 ~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~----------~~~s---------------~----~~  452 (921)
                      .+..|++|.+.|.++||||+.+.++|+|.||+ +||||+.-.+.          ++.+               .    .-
T Consensus       270 rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~  348 (420)
T KOG2096|consen  270 RVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV  348 (420)
T ss_pred             hhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe
Confidence            34578899999999999999999999999998 89999875311          1000               0    00


Q ss_pred             CCCceeEEEEEeccc--------ccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          453 AGTSYVHLYRLQRGL--------TNAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       453 ~~~~~~~l~~l~RG~--------t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                      ..++-.+++.-++|.        +...|.+|+|++||+++|+++ |.-++|+.-.+
T Consensus       349 s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntp  403 (420)
T KOG2096|consen  349 SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTP  403 (420)
T ss_pred             ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCC
Confidence            111223344434442        233599999999999999987 45688876433

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.53  E-value=6.9e-13  Score=154.41  Aligned_cols=316  Identities=16%  Similarity=0.213  Sum_probs=205.1

Q ss_pred             HHhhhhcccccCCCCCC--------CCCcceecCCCCchhHHhcceeeecc-CcchhhhhhhhhccccccCCCCCCCCcE
Q 002446           21 FIVRLFSGMRNSTDGPK--------PQNGVVSRSTKSPFRAISSYFRIVSS-GASTVARSAVSVASSIVERDDESSHDQV   91 (921)
Q Consensus        21 ~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~s~~~~s~~~~~~ss-~~~t~~~~~a~~~~s~~~~~~~~~kd~V   91 (921)
                      +++.=|+-||..++-|.        ..|-++      .|..-+-|+-.+.- +.++.   .|.-.+.|   +-.+|+..|
T Consensus       309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv------~l~nNtv~~ysl~~s~~~~p---~~~~~~~i---~~~GHR~dV  376 (888)
T KOG0306|consen  309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLV------LLANNTVEWYSLENSGKTSP---EADRTSNI---EIGGHRSDV  376 (888)
T ss_pred             HHHHHHHheechhheeEEEEEecCCcceeEE------EeecCceEEEEeccCCCCCc---ccccccee---eeccchhhe
Confidence            34444788887765543        113334      35555556555443 22221   12223333   456899999


Q ss_pred             EEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeC
Q 002446           92 LWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCAD  171 (921)
Q Consensus        92 ~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~  171 (921)
                      .-.+|..   +.    .+++.|..+.++||+.++....+.+   -.+=+-+..|+|.             . .++ +.+.
T Consensus       377 Rsl~vS~---d~----~~~~Sga~~SikiWn~~t~kciRTi---~~~y~l~~~Fvpg-------------d-~~I-v~G~  431 (888)
T KOG0306|consen  377 RSLCVSS---DS----ILLASGAGESIKIWNRDTLKCIRTI---TCGYILASKFVPG-------------D-RYI-VLGT  431 (888)
T ss_pred             eEEEeec---Cc----eeeeecCCCcEEEEEccCcceeEEe---ccccEEEEEecCC-------------C-ceE-EEec
Confidence            9999987   54    7888888899999999984333322   2345667777763             1 122 2222


Q ss_pred             CCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-CCCCEEEEEEc---CCEEEEEeCCEEE
Q 002446          172 GSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS---SRVVAICQAAQVH  247 (921)
Q Consensus       172 g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S---~riLAVa~d~~I~  247 (921)
                      .                                .+.+.+||+.+...+.+++ +.+.|++|+.+   ..++.++.|++|+
T Consensus       432 k--------------------------------~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVk  479 (888)
T KOG0306|consen  432 K--------------------------------NGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVK  479 (888)
T ss_pred             c--------------------------------CCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEE
Confidence            1                                1679999999999999998 56899999996   4677778999999


Q ss_pred             EEECCCCcEEEEEecCCCccCCCCCCCCCccccceeec-CceEEecCCCceecCCCccCCcccccccccccccCCCccee
Q 002446          248 CFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVG-PRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVA  326 (921)
Q Consensus       248 IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlg-pRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va  326 (921)
                      +||..-.   ..   -|   +.+        .-.+.+- .|.|-..+.-+-+.    ++|+              |++  
T Consensus       480 fWdf~l~---~~---~~---gt~--------~k~lsl~~~rtLel~ddvL~v~----~Spd--------------gk~--  522 (888)
T KOG0306|consen  480 FWDFKLV---VS---VP---GTQ--------KKVLSLKHTRTLELEDDVLCVS----VSPD--------------GKL--  522 (888)
T ss_pred             EEeEEEE---ec---cC---ccc--------ceeeeeccceEEeccccEEEEE----EcCC--------------CcE--
Confidence            9996411   00   00   000        0000000 01111110000000    0011              111  


Q ss_pred             ehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEe
Q 002446          327 HYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF  406 (921)
Q Consensus       327 ~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~  406 (921)
                               |+                                               -+--+.+|+||-+++.+..-.+
T Consensus       523 ---------La-----------------------------------------------VsLLdnTVkVyflDtlKFflsL  546 (888)
T KOG0306|consen  523 ---------LA-----------------------------------------------VSLLDNTVKVYFLDTLKFFLSL  546 (888)
T ss_pred             ---------EE-----------------------------------------------EEeccCeEEEEEecceeeeeee
Confidence                     11                                               1122568999999999999999


Q ss_pred             ccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEE
Q 002446          407 RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI  486 (921)
Q Consensus       407 ~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAs  486 (921)
                      .+|.=||.||..|||+++|+|||.|.+ |+||-+.-|            .|+  ..+. +|.. .|.++.|-|+...+.+
T Consensus       547 YGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFG------------DCH--KS~f-AHdD-Svm~V~F~P~~~~FFt  609 (888)
T KOG0306|consen  547 YGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFG------------DCH--KSFF-AHDD-SVMSVQFLPKTHLFFT  609 (888)
T ss_pred             cccccceeEEeccCCcCeEEeccCCCc-eEEeccccc------------hhh--hhhh-cccC-ceeEEEEcccceeEEE
Confidence            999999999999999999999999976 999999876            122  1222 3332 3999999999999999


Q ss_pred             EeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          487 SSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       487 gS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      ++.|+.|+-||-..+.....+.+|..++-
T Consensus       610 ~gKD~kvKqWDg~kFe~iq~L~~H~~ev~  638 (888)
T KOG0306|consen  610 CGKDGKVKQWDGEKFEEIQKLDGHHSEVW  638 (888)
T ss_pred             ecCcceEEeechhhhhhheeeccchheee
Confidence            99999999999999999999999966543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=2.6e-12  Score=135.99  Aligned_cols=205  Identities=19%  Similarity=0.270  Sum_probs=152.4

Q ss_pred             EeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEE
Q 002446          131 DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHF  210 (921)
Q Consensus       131 elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrI  210 (921)
                      ..++.|.+.|..+++-|-             +..+||.|++          |                       ++||+
T Consensus         8 ~~~~gh~~r~W~~awhp~-------------~g~ilAscg~----------D-----------------------k~vri   41 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPG-------------KGVILASCGT----------D-----------------------KAVRI   41 (312)
T ss_pred             EeecCCCCcEEEEEeccC-------------CceEEEeecC----------C-----------------------ceEEE
Confidence            456778888998888762             1236776764          2                       78999


Q ss_pred             EECCCC---cEEEEEe--CCCCEEEEEEc--CCEEEE-EeCCEEEEEECC--CCcEEEEEecCCCccCCCCCCCCCcccc
Q 002446          211 YSLRSQ---SYVHMLK--FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAA--TLEIEYAILTNPIVMGHPSAGGIGIGYG  280 (921)
Q Consensus       211 WDL~Tg---~~V~tL~--f~s~V~sV~~S--~riLAV-a~d~~I~IwDl~--T~~~l~tL~t~p~~~g~p~~~g~~i~~~  280 (921)
                      |++..+   .++..|.  +...|++|+++  +++||+ ++|.++.||--.  +++++.+|++|.+..-+           
T Consensus        42 w~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~-----------  110 (312)
T KOG0645|consen   42 WSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKC-----------  110 (312)
T ss_pred             EecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeE-----------
Confidence            999853   3454553  46799999996  689998 789999999866  56789999988664221           


Q ss_pred             ceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccC
Q 002446          281 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP  360 (921)
Q Consensus       281 piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p  360 (921)
                       +       |++.                           +|.                                     
T Consensus       111 -V-------aws~---------------------------sG~-------------------------------------  118 (312)
T KOG0645|consen  111 -V-------AWSA---------------------------SGN-------------------------------------  118 (312)
T ss_pred             -E-------EEcC---------------------------CCC-------------------------------------
Confidence             2       3321                           011                                     


Q ss_pred             CCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC---ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEE
Q 002446          361 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINI  437 (921)
Q Consensus       361 ~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~---~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrI  437 (921)
                                           .+++...+..|-||.+...   .+++.|+.|+.-|-.+.|.|.-.+|+++|.|.| |++
T Consensus       119 ---------------------~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnT-Ik~  176 (312)
T KOG0645|consen  119 ---------------------YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNT-IKV  176 (312)
T ss_pred             ---------------------EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCe-EEE
Confidence                                 0122344567888888743   578899999999999999999999999999987 999


Q ss_pred             EeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 002446          438 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       438 Wdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                      |+-.++       .+    -.++.+| .|++. .|.+++|.|+|..|++++.|+|++||.+.
T Consensus       177 ~~~~~d-------dd----W~c~~tl-~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  177 YRDEDD-------DD----WECVQTL-DGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             EeecCC-------CC----eeEEEEe-cCccc-eEEEEEecCCCceEEEecCCcceEeeeec
Confidence            987743       11    2445566 35543 69999999999999999999999999965

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.53  E-value=6.5e-14  Score=154.14  Aligned_cols=229  Identities=17%  Similarity=0.282  Sum_probs=169.5

Q ss_pred             eEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 002446          108 RVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT  186 (921)
Q Consensus       108 ~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~  186 (921)
                      ..++.|-.+| +++|+.+- ++++.+-..|+..||++++.|+       ..+|       +.|++          |    
T Consensus       151 ~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpn-------DskF-------~t~Sd----------D----  201 (464)
T KOG0284|consen  151 TWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPN-------DSKF-------LTCSD----------D----  201 (464)
T ss_pred             CEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCC-------Ccee-------EEecC----------C----
Confidence            7888888777 69999876 4565544555699999999884       2233       33443          2    


Q ss_pred             ccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCC-CEEEEEEc--CCEEEE-EeCCEEEEEECCCCcEEEEEec
Q 002446          187 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS-PIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT  262 (921)
Q Consensus       187 ~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s-~V~sV~~S--~riLAV-a~d~~I~IwDl~T~~~l~tL~t  262 (921)
                                         ++|+|||..-.+.-..|..++ -|.++.+-  .-+||+ +-|+.|++||.++++|+.++..
T Consensus       202 -------------------g~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~  262 (464)
T KOG0284|consen  202 -------------------GTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG  262 (464)
T ss_pred             -------------------CeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh
Confidence                               789999999888777776544 78888885  467777 5677999999999999999887


Q ss_pred             CCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEe
Q 002446          263 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN  342 (921)
Q Consensus       263 ~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~  342 (921)
                      |.+.              .+++     -|.             |.              +                    
T Consensus       263 HKnt--------------Vl~~-----~f~-------------~n--------------~--------------------  276 (464)
T KOG0284|consen  263 HKNT--------------VLAV-----KFN-------------PN--------------G--------------------  276 (464)
T ss_pred             ccce--------------EEEE-----EEc-------------CC--------------C--------------------
Confidence            7541              1211     111             00              0                    


Q ss_pred             cCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECC-C
Q 002446          343 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-S  421 (921)
Q Consensus       343 lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSP-d  421 (921)
                                +                            -+++++.|..++++|+.+.+.+..+++|+..|.+++++| .
T Consensus       277 ----------N----------------------------~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~  318 (464)
T KOG0284|consen  277 ----------N----------------------------WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN  318 (464)
T ss_pred             ----------C----------------------------eeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence                      0                            122345567899999999999999999999999999999 5


Q ss_pred             CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          422 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       422 GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      -.+|.+++.||. |..|.+...              ..+-.+.-+|.. .|++++|.|=|.+||+||.|.|++.|.-...
T Consensus       319 ~~lftsgg~Dgs-vvh~~v~~~--------------~p~~~i~~AHd~-~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  319 ESLFTSGGSDGS-VVHWVVGLE--------------EPLGEIPPAHDG-EIWSLAYHPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             ccceeeccCCCc-eEEEecccc--------------ccccCCCccccc-ceeeeeccccceeEeecCCCcceeeeccCCC
Confidence            668999999997 889988732              112222233333 3999999999999999999999999988766


Q ss_pred             CCc
Q 002446          502 GGS  504 (921)
Q Consensus       502 g~~  504 (921)
                      +..
T Consensus       383 ~d~  385 (464)
T KOG0284|consen  383 GDK  385 (464)
T ss_pred             CCc
Confidence            554

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.52  E-value=1.6e-12  Score=142.46  Aligned_cols=116  Identities=15%  Similarity=0.238  Sum_probs=93.0

Q ss_pred             ccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 002446          385 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ  464 (921)
Q Consensus       385 s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~  464 (921)
                      +...|-+|++||+.++..+.++... .++.|+..+|..++||++|.|.+ ||+||-.++ .++        ..  ...| 
T Consensus       276 S~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~-irl~DPR~~-~gs--------~v--~~s~-  341 (423)
T KOG0313|consen  276 SVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRH-IRLWDPRTG-DGS--------VV--SQSL-  341 (423)
T ss_pred             eecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCc-eeecCCCCC-CCc--------ee--EEee-
Confidence            4567889999999999998888765 48999999999999999999976 999998876 111        11  2344 


Q ss_pred             cccccccEEEEEEccCCC-EEEEEeCCCcEEEEecCCCC-CceeecCCCCCcc
Q 002446          465 RGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLG-GSVNFQPTDANFT  515 (921)
Q Consensus       465 RG~t~a~I~sIaFSPDg~-~LAsgS~DgTVhVWdi~~~g-~~~~l~~H~~~~~  515 (921)
                      -||.+ -|..+.|+|... .|+++|.|+|+++||+.... ....+.+|.+-+-
T Consensus       342 ~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl  393 (423)
T KOG0313|consen  342 IGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL  393 (423)
T ss_pred             ecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEE
Confidence            46655 599999999665 57899999999999999877 5568899965544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.52  E-value=6.5e-13  Score=138.09  Aligned_cols=182  Identities=15%  Similarity=0.158  Sum_probs=140.5

Q ss_pred             cEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CCEEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccc
Q 002446          206 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP  281 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S---~riLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~p  281 (921)
                      .+||+|+...|.++++..- ...|.+++.+   .++-+...|+.|++||+.|++.++.+.+|..            .+|.
T Consensus        39 rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a------------qVNt  106 (307)
T KOG0316|consen   39 RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA------------QVNT  106 (307)
T ss_pred             ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccc------------eeeE
Confidence            8999999999999999986 4589998885   4555557889999999999999999988731            1232


Q ss_pred             eeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCC
Q 002446          282 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD  361 (921)
Q Consensus       282 iAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~  361 (921)
                      +       +|....                            .                                     
T Consensus       107 V-------~fNees----------------------------S-------------------------------------  114 (307)
T KOG0316|consen  107 V-------RFNEES----------------------------S-------------------------------------  114 (307)
T ss_pred             E-------EecCcc----------------------------e-------------------------------------
Confidence            2       232100                            0                                     


Q ss_pred             CcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC--ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEe
Q 002446          362 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK  439 (921)
Q Consensus       362 ~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~--~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWd  439 (921)
                                          .++++..|..|++||-.+.  ++++.|..-...|.++..  .+..++++|.||+ +|.||
T Consensus       115 --------------------Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGt-vRtyd  171 (307)
T KOG0316|consen  115 --------------------VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGT-VRTYD  171 (307)
T ss_pred             --------------------EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCc-EEEEE
Confidence                                0123455678999999864  678888888888988876  4689999999998 89999


Q ss_pred             CCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 002446          440 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA  512 (921)
Q Consensus       440 i~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~  512 (921)
                      +..+              .. ..   ..-...|++++||+|++.+.+++.|+|+|+.|-.+++-...+.+|.+
T Consensus       172 iR~G--------------~l-~s---Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn  226 (307)
T KOG0316|consen  172 IRKG--------------TL-SS---DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN  226 (307)
T ss_pred             eecc--------------ee-eh---hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence            9987              11 11   11223599999999999999999999999999988877778889854

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.52  E-value=1e-13  Score=155.20  Aligned_cols=237  Identities=15%  Similarity=0.215  Sum_probs=160.5

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeee-cCCEEEEEEecCCCCCccccCccccCCC
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRY-DGPVSFMQMLPRPITSKRSRDKFAEVRP  164 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~-dG~Vr~v~~lP~P~~~~~~~d~F~~~rP  164 (921)
                      +|+..|.-++|++   ++   .++|..+|+..+++||+|+ |.+.  .+-+ +..+.|+++-|++              +
T Consensus       256 gH~k~Vrd~~~s~---~g---~~fLS~sfD~~lKlwDtET-G~~~--~~f~~~~~~~cvkf~pd~--------------~  312 (503)
T KOG0282|consen  256 GHRKPVRDASFNN---CG---TSFLSASFDRFLKLWDTET-GQVL--SRFHLDKVPTCVKFHPDN--------------Q  312 (503)
T ss_pred             cchhhhhhhhccc---cC---Ceeeeeecceeeeeecccc-ceEE--EEEecCCCceeeecCCCC--------------C
Confidence            6888899999999   55   4899999999999999999 4443  3333 5567888887752              2


Q ss_pred             EEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEE---cCCEEEE
Q 002446          165 LLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRC---SSRVVAI  240 (921)
Q Consensus       165 LLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~---S~riLAV  240 (921)
                      -+.+|++.         |                       +.|+-||+++++.++++.. -+.|.+|.|   ++++|..
T Consensus       313 n~fl~G~s---------d-----------------------~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  313 NIFLVGGS---------D-----------------------KKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             cEEEEecC---------C-----------------------CcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence            34455531         1                       6799999999999988865 478888888   4677777


Q ss_pred             EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccC
Q 002446          241 CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS  320 (921)
Q Consensus       241 a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s  320 (921)
                      +.++.++||+..+.-.+..+... ....+|          .+++.|                    .             
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~-~~hsmP----------~~~~~P--------------------~-------------  396 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADP-EMHTMP----------CLTLHP--------------------N-------------  396 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcch-hhccCc----------ceecCC--------------------C-------------
Confidence            88999999999876544333211 111111          111111                    0             


Q ss_pred             CCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCC-
Q 002446          321 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-  399 (921)
Q Consensus       321 ~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s-  399 (921)
                       +..                                                          ++....+..|.|+.+.. 
T Consensus       397 -~~~----------------------------------------------------------~~aQs~dN~i~ifs~~~~  417 (503)
T KOG0282|consen  397 -GKW----------------------------------------------------------FAAQSMDNYIAIFSTVPP  417 (503)
T ss_pred             -CCe----------------------------------------------------------ehhhccCceEEEEecccc
Confidence             100                                                          00111223444444332 


Q ss_pred             --CceEEEeccCCC--CeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEE
Q 002446          400 --KNVIAQFRAHKS--PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI  475 (921)
Q Consensus       400 --~~~l~~~~aH~~--pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sI  475 (921)
                        ......|++|..  --..+.|||||.+|++|+.||. +.+||..+.              ..+.++ ..++ ..+..+
T Consensus       418 ~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~-v~~wdwkt~--------------kl~~~l-kah~-~~ci~v  480 (503)
T KOG0282|consen  418 FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK-VNFWDWKTT--------------KLVSKL-KAHD-QPCIGV  480 (503)
T ss_pred             cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc-EEEeechhh--------------hhhhcc-ccCC-cceEEE
Confidence              123457788864  3445899999999999999997 899999974              233333 2333 348899


Q ss_pred             EEccC-CCEEEEEeCCCcEEEEe
Q 002446          476 SFSDD-SNWIMISSSRGTSHLFA  497 (921)
Q Consensus       476 aFSPD-g~~LAsgS~DgTVhVWd  497 (921)
                      .|.|- ..-+|+++-||-|+||+
T Consensus       481 ~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  481 DWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EecCCCcceeEecccCceeEecC
Confidence            99995 45799999999999996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.51  E-value=4e-13  Score=148.01  Aligned_cols=281  Identities=16%  Similarity=0.239  Sum_probs=176.7

Q ss_pred             CCCCCcEEEEEEecccCCCCCCCeEEEEEccC-cEEEEEccCCCCe--EEeeeeecCCEEEEEEecCCCCCccccCcccc
Q 002446           85 ESSHDQVLWAGFDKLESEAGATRRVLLLGYRS-GFQVWDVEEADNV--HDLVSRYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        85 ~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~-GfqVWDv~~~~~~--~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~  161 (921)
                      .+|+|+|=|+.|..   +|    +.|+.+..+ ..-||++.....+  ...+-.|..+|.++.++|+             
T Consensus       221 ~~htdEVWfl~FS~---nG----kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD-------------  280 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSH---NG----KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD-------------  280 (519)
T ss_pred             hhCCCcEEEEEEcC---CC----eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC-------------
Confidence            46899999999998   77    799998855 5689999875542  2334568899999999985             


Q ss_pred             CCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCC--CCEEEEEEc--C-C
Q 002446          162 VRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFR--SPIYSVRCS--S-R  236 (921)
Q Consensus       162 ~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~--s~V~sV~~S--~-r  236 (921)
                      .|-||++..+                                  ..+++||..||++++.+...  -.+.+.++.  + +
T Consensus       281 dryLlaCg~~----------------------------------e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~  326 (519)
T KOG0293|consen  281 DRYLLACGFD----------------------------------EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR  326 (519)
T ss_pred             CCeEEecCch----------------------------------HheeeccCCcchhhhhcccCcCCCcceeEEccCCce
Confidence            3445543322                                  33899999999999988754  466677775  3 5


Q ss_pred             EEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecC--ceEEecCCCceecCCCccCCcccccccc
Q 002446          237 VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRS  314 (921)
Q Consensus       237 iLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgp--RwLAyas~~~~~s~~GrvsPq~l~~s~~  314 (921)
                      +|+.+.+++|.-||+..-. +...+.--.    |       .+..+|+.+  .|+-....+                   
T Consensus       327 ~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~----~-------~v~dlait~Dgk~vl~v~~d-------------------  375 (519)
T KOG0293|consen  327 FVTGSPDRTIIMWDLDGNI-LGNWEGVRD----P-------KVHDLAITYDGKYVLLVTVD-------------------  375 (519)
T ss_pred             eEecCCCCcEEEecCCcch-hhccccccc----c-------eeEEEEEcCCCcEEEEEecc-------------------
Confidence            5666889999999987433 222221100    0       112233322  222211110                   


Q ss_pred             cccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEE
Q 002446          315 FSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIV  394 (921)
Q Consensus       315 ~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~I  394 (921)
                              +.+.-|.+++--  -.|+... +   +++++++.                .+. +.   .+...-.+..|++
T Consensus       376 --------~~i~l~~~e~~~--dr~lise-~---~~its~~i----------------S~d-~k---~~LvnL~~qei~L  421 (519)
T KOG0293|consen  376 --------KKIRLYNREARV--DRGLISE-E---QPITSFSI----------------SKD-GK---LALVNLQDQEIHL  421 (519)
T ss_pred             --------cceeeechhhhh--hhccccc-c---CceeEEEE----------------cCC-Cc---EEEEEcccCeeEE
Confidence                    000111111000  0000000 0   11111110                000 00   0111124567999


Q ss_pred             EECCCCceEEEeccCCCC--eEEEEECC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccccccc
Q 002446          395 RDIVSKNVIAQFRAHKSP--ISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV  471 (921)
Q Consensus       395 wDl~s~~~l~~~~aH~~p--IsaLaFSP-dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~  471 (921)
                      ||++..+.+..+.+|+..  |-.-||-- +.+++|+||+|++ |+||+-..+              ..+.+| .||.. .
T Consensus       422 WDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sg--------------kll~~L-sGHs~-~  484 (519)
T KOG0293|consen  422 WDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISG--------------KLLAVL-SGHSK-T  484 (519)
T ss_pred             eecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCC--------------ceeEee-cCCcc-e
Confidence            999999999999999853  55567876 5589999999987 999998876              455566 57764 4


Q ss_pred             EEEEEEcc-CCCEEEEEeCCCcEEEEecCCC
Q 002446          472 IQDISFSD-DSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       472 I~sIaFSP-Dg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      |++++|+| |-.+||++|+||||+||...+.
T Consensus       485 vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  485 VNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             eeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99999999 5678999999999999998765

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.48  E-value=1.7e-12  Score=135.86  Aligned_cols=103  Identities=16%  Similarity=0.202  Sum_probs=83.8

Q ss_pred             ccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR  462 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~  462 (921)
                      +++..+.+.|..||..+..+++.++.. ..|.+.+++|+-..++.+..|+. ++.||..++              ..+-.
T Consensus       198 ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~-~~kfDy~Tg--------------eEi~~  261 (334)
T KOG0278|consen  198 ILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFK-VYKFDYNTG--------------EEIGS  261 (334)
T ss_pred             EEEEecCceeEEeccccccceeeccCc-cccccccccCCCceEEecCcceE-EEEEeccCC--------------ceeee
Confidence            344455678999999999988887754 36888999999999999999986 899999987              22222


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 002446          463 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG  502 (921)
Q Consensus       463 l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g  502 (921)
                      +..|+.. .|.|+.|||||...|+||.||||+||...+..
T Consensus       262 ~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  262 YNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             cccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            2356654 59999999999999999999999999997753

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.3e-12  Score=137.20  Aligned_cols=251  Identities=12%  Similarity=0.120  Sum_probs=170.1

Q ss_pred             CCCCCCCcEEEEEEecccCC------CCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCcccc
Q 002446           83 DDESSHDQVLWAGFDKLESE------AGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSR  156 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~~~~d------~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~  156 (921)
                      |.++.+.-....+||.-+.-      ...-..+++...++.+||||+..+.+....+..|...|..+..-+.        
T Consensus        44 e~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~--------  115 (311)
T KOG0277|consen   44 EVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV--------  115 (311)
T ss_pred             ecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc--------
Confidence            33345666777778772210      0112355555557779999987766665666778778877766431        


Q ss_pred             CccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEc-
Q 002446          157 DKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS-  234 (921)
Q Consensus       157 d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S-  234 (921)
                            +.-..+.+ +|                               ++|||+||..-++-+++++- .+.||...++ 
T Consensus       116 ------~r~~~lts-SW-------------------------------D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp  157 (311)
T KOG0277|consen  116 ------RRRIFLTS-SW-------------------------------DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSP  157 (311)
T ss_pred             ------cceeEEee-cc-------------------------------CCceEeecCCCCcceEeecCCccEEEEEecCC
Confidence                  12222233 44                               38899999999999999875 6799999998 


Q ss_pred             --CCEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccc
Q 002446          235 --SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQ  311 (921)
Q Consensus       235 --~riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~  311 (921)
                        ++++|. +.|++.++||++..-....++.|...                ++.-.|                       
T Consensus       158 ~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~E----------------il~cdw-----------------------  198 (311)
T KOG0277|consen  158 HIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSE----------------ILCCDW-----------------------  198 (311)
T ss_pred             CCCCeEEEccCCceEEEEEecCCCceeEEEeccce----------------eEeecc-----------------------
Confidence              477877 77899999998754333334433110                000000                       


Q ss_pred             ccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCE
Q 002446          312 SRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGM  391 (921)
Q Consensus       312 s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~  391 (921)
                                                              ++|-                        ...+++++.++.
T Consensus       199 ----------------------------------------~ky~------------------------~~vl~Tg~vd~~  214 (311)
T KOG0277|consen  199 ----------------------------------------SKYN------------------------HNVLATGGVDNL  214 (311)
T ss_pred             ----------------------------------------cccC------------------------CcEEEecCCCce
Confidence                                                    0010                        002345677899


Q ss_pred             EEEEECCCC-ceEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccccc
Q 002446          392 VIVRDIVSK-NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN  469 (921)
Q Consensus       392 V~IwDl~s~-~~l~~~~aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~  469 (921)
                      |++||+.+. .++..+.+|.-+|..|+|||. ..+||+||.|=| +||||...+ .          +....++    ++.
T Consensus       215 vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~-d----------s~~e~~~----~Ht  278 (311)
T KOG0277|consen  215 VRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQ-D----------SAIETVD----HHT  278 (311)
T ss_pred             EEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccc-h----------hhhhhhh----ccc
Confidence            999999975 578899999999999999996 568999999987 899998854 0          1122222    122


Q ss_pred             ccEEEEEEcc-CCCEEEEEeCCCcEEEEec
Q 002446          470 AVIQDISFSD-DSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       470 a~I~sIaFSP-Dg~~LAsgS~DgTVhVWdi  498 (921)
                      .-|..+.||+ +..++|+.+-|.++.||+-
T Consensus       279 EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  279 EFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             eEEeccccccccCceeeecccccceeeecc
Confidence            3488899987 7889999999999999973

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.47  E-value=5.9e-12  Score=151.99  Aligned_cols=252  Identities=19%  Similarity=0.265  Sum_probs=174.7

Q ss_pred             CCCCCcEEEEEEecccCCCCCCCeEEEEEccCc-EEEEEccC------CCC-----------eEEeeeeecCCEEEEEEe
Q 002446           85 ESSHDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEE------ADN-----------VHDLVSRYDGPVSFMQML  146 (921)
Q Consensus        85 ~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~G-fqVWDv~~------~~~-----------~~elvS~~dG~Vr~v~~l  146 (921)
                      +.|...|.+++|-+   ||    ++|+.|.++. ++||.-+.      .+.           +..++..|++-|..+.+.
T Consensus        66 ~~h~~sv~CVR~S~---dG----~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   66 DDHDGSVNCVRFSP---DG----SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             ccccCceeEEEECC---CC----CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            45778899999999   88    7999999988 59999983      111           334555678888888887


Q ss_pred             cCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-C
Q 002446          147 PRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-R  225 (921)
Q Consensus       147 P~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~  225 (921)
                      |+              -.+||.|+-                                 +++|-|||.++.+.++.|+- .
T Consensus       139 p~--------------~~~lvS~s~---------------------------------DnsViiwn~~tF~~~~vl~~H~  171 (942)
T KOG0973|consen  139 PD--------------DSLLVSVSL---------------------------------DNSVIIWNAKTFELLKVLRGHQ  171 (942)
T ss_pred             CC--------------ccEEEEecc---------------------------------cceEEEEccccceeeeeeeccc
Confidence            64              145665552                                 27899999999999999975 6


Q ss_pred             CCEEEEEEc--CCEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCC
Q 002446          226 SPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDG  302 (921)
Q Consensus       226 s~V~sV~~S--~riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~G  302 (921)
                      +.|..|.|.  ++++|+ +.|++|+||+..+....+++...-..  ++.       + .+     ++=.      .|   
T Consensus       172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~--~~~-------~-T~-----f~Rl------SW---  227 (942)
T KOG0973|consen  172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE--SPL-------T-TF-----FLRL------SW---  227 (942)
T ss_pred             ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh--CCC-------c-ce-----eeec------cc---
Confidence            899999996  699999 88899999998887776666432100  000       0 00     0000      00   


Q ss_pred             ccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCc
Q 002446          303 RVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGH  382 (921)
Q Consensus       303 rvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~  382 (921)
                        +|+              |..           |++                              +..       ++  
T Consensus       228 --SPD--------------G~~-----------las------------------------------~nA-------~n--  241 (942)
T KOG0973|consen  228 --SPD--------------GHH-----------LAS------------------------------PNA-------VN--  241 (942)
T ss_pred             --CCC--------------cCe-----------ecc------------------------------hhh-------cc--
Confidence              011              111           110                              000       00  


Q ss_pred             ccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCC-----CC------------EEEEEecCCCEEEEEeCCCCCC
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-----GI------------LLVTASVQGHNINIFKIIPGIL  445 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPd-----Gt------------lLATaS~DGt~IrIWdi~~g~~  445 (921)
                          +..-.+.|.+-.+-+.-..|-+|..|+.+++|+|.     -+            .+|+||.|++ |-||.....  
T Consensus       242 ----~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS-lSVW~T~~~--  314 (942)
T KOG0973|consen  242 ----GGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS-LSVWNTALP--  314 (942)
T ss_pred             ----CCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc-EEEEecCCC--
Confidence                11235677776677777889999999999999982     11            6899999987 899987543  


Q ss_pred             CCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          446 GTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       446 ~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                                  +.+...+. .....|.|++|||||.-|.++|.||||.++..+.
T Consensus       315 ------------RPl~vi~~-lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  315 ------------RPLFVIHN-LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             ------------Cchhhhhh-hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence                        23332221 1234599999999999999999999999998865

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=3.9e-12  Score=146.72  Aligned_cols=239  Identities=15%  Similarity=0.192  Sum_probs=183.9

Q ss_pred             CeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 002446          107 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT  186 (921)
Q Consensus       107 ~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~  186 (921)
                      ..+|++|....+-+|+-.+ +.+.++++-....|..+.+.++              ...||+...               
T Consensus       188 ~n~laValg~~vylW~~~s-~~v~~l~~~~~~~vtSv~ws~~--------------G~~LavG~~---------------  237 (484)
T KOG0305|consen  188 ANVLAVALGQSVYLWSASS-GSVTELCSFGEELVTSVKWSPD--------------GSHLAVGTS---------------  237 (484)
T ss_pred             CCeEEEEecceEEEEecCC-CceEEeEecCCCceEEEEECCC--------------CCEEEEeec---------------
Confidence            4799999999999999988 6788888877889999988764              245665543               


Q ss_pred             ccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC--CCCEEEEEEcCCEEEE-EeCCEEEEEECCCCcEEEE-Eec
Q 002446          187 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF--RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYA-ILT  262 (921)
Q Consensus       187 ~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f--~s~V~sV~~S~riLAV-a~d~~I~IwDl~T~~~l~t-L~t  262 (921)
                                        .++|.|||.++.+.+.++..  ...|-+++++..++.. ..++.|..+|++..+.... +..
T Consensus       238 ------------------~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~  299 (484)
T KOG0305|consen  238 ------------------DGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQG  299 (484)
T ss_pred             ------------------CCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhc
Confidence                              16799999999999999887  6789999999877776 6788999999988764333 222


Q ss_pred             CCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEe
Q 002446          263 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN  342 (921)
Q Consensus       263 ~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~  342 (921)
                      |..                                                                      -+.|+.+
T Consensus       300 H~q----------------------------------------------------------------------eVCgLkw  309 (484)
T KOG0305|consen  300 HRQ----------------------------------------------------------------------EVCGLKW  309 (484)
T ss_pred             ccc----------------------------------------------------------------------eeeeeEE
Confidence            211                                                                      0112221


Q ss_pred             cCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECC-C
Q 002446          343 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-S  421 (921)
Q Consensus       343 lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSP-d  421 (921)
                      --|.                                  ..++++++|..|.|||.....++.++..|+.+|-+|+|+| .
T Consensus       310 s~d~----------------------------------~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q  355 (484)
T KOG0305|consen  310 SPDG----------------------------------NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ  355 (484)
T ss_pred             CCCC----------------------------------CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc
Confidence            1111                                  1234567889999999999999999999999999999999 6


Q ss_pred             CCEEEEEe--cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEE--EeCCCcEEEEe
Q 002446          422 GILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI--SSSRGTSHLFA  497 (921)
Q Consensus       422 GtlLATaS--~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAs--gS~DgTVhVWd  497 (921)
                      ..+||||+  .|++ |++||+.++              ..+..+   .+.+.|.+|.||+..+-|++  |-.++-|.||+
T Consensus       356 ~~lLAsGGGs~D~~-i~fwn~~~g--------------~~i~~v---dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~  417 (484)
T KOG0305|consen  356 SGLLATGGGSADRC-IKFWNTNTG--------------ARIDSV---DTGSQVCSLIWSKKYKELLSTHGYSENQITLWK  417 (484)
T ss_pred             cCceEEcCCCcccE-EEEEEcCCC--------------cEeccc---ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEe
Confidence            77999974  5765 999999986              333333   35567999999999876665  45677899999


Q ss_pred             cCCCCCceeecCCCCCcc
Q 002446          498 INPLGGSVNFQPTDANFT  515 (921)
Q Consensus       498 i~~~g~~~~l~~H~~~~~  515 (921)
                      +.+......+.+|...+-
T Consensus       418 ~ps~~~~~~l~gH~~RVl  435 (484)
T KOG0305|consen  418 YPSMKLVAELLGHTSRVL  435 (484)
T ss_pred             ccccceeeeecCCcceeE
Confidence            999888889999976544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.46  E-value=2.9e-13  Score=158.01  Aligned_cols=113  Identities=15%  Similarity=0.261  Sum_probs=89.1

Q ss_pred             CCCCEEEEEECCC-CceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 002446          387 DNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR  465 (921)
Q Consensus       387 ~~~G~V~IwDl~s-~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~R  465 (921)
                      ...|.+++||+.. .++...|.||.+||.|+.++|++.+||||+.|++ |+|||...+            ....+.+.  
T Consensus       196 ~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~------------~~~~~~tI--  260 (839)
T KOG0269|consen  196 HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDS------------RAKPKHTI--  260 (839)
T ss_pred             cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCC------------CccceeEE--
Confidence            4458899999975 4567788899999999999999999999999986 999998864            11223344  


Q ss_pred             ccccccEEEEEEccCCCE-EEEEeC--CCcEEEEecC-CCCCceeecCCCCCcc
Q 002446          466 GLTNAVIQDISFSDDSNW-IMISSS--RGTSHLFAIN-PLGGSVNFQPTDANFT  515 (921)
Q Consensus       466 G~t~a~I~sIaFSPDg~~-LAsgS~--DgTVhVWdi~-~~g~~~~l~~H~~~~~  515 (921)
                       .|.+.|..|.|-|+-++ ||++++  |-.|||||+. ||-.-.++..|.+.+.
T Consensus       261 -nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt  313 (839)
T KOG0269|consen  261 -NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT  313 (839)
T ss_pred             -eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc
Confidence             35578999999998765 666665  6789999998 4555568888877665

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.46  E-value=7.3e-12  Score=137.31  Aligned_cols=225  Identities=15%  Similarity=0.248  Sum_probs=157.7

Q ss_pred             eEEEEEccCcEEEEEccCCCCeEEe---eeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 002446          108 RVLLLGYRSGFQVWDVEEADNVHDL---VSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL  184 (921)
Q Consensus       108 ~vLllG~~~GfqVWDv~~~~~~~el---vS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~  184 (921)
                      .++..+-+..+++|-.+......+.   +..|.++|-++..++..                ..+|+++|           
T Consensus       161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg----------------tr~~SgS~-----------  213 (423)
T KOG0313|consen  161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG----------------TRFCSGSW-----------  213 (423)
T ss_pred             eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC----------------CeEEeecc-----------
Confidence            4666666778899998885443333   34788889988887531                12344433           


Q ss_pred             ccccCCCCCCcCCCCCCCCCCcEEEEEEC-------------------------CCCcEEEEEe-CCCCEEEEEEcC--C
Q 002446          185 ATACNGTSANYHDLGNGSSVPTVVHFYSL-------------------------RSQSYVHMLK-FRSPIYSVRCSS--R  236 (921)
Q Consensus       185 ~~~~~g~~~~~h~~g~~~~~~~tVrIWDL-------------------------~Tg~~V~tL~-f~s~V~sV~~S~--r  236 (921)
                                          +++|+||+.                         .++..+-+|. +..+|.+|.|+.  -
T Consensus       214 --------------------D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v  273 (423)
T KOG0313|consen  214 --------------------DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATV  273 (423)
T ss_pred             --------------------cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCc
Confidence                                377888881                         1223344454 467999999974  4


Q ss_pred             EEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccc
Q 002446          237 VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFS  316 (921)
Q Consensus       237 iLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~  316 (921)
                      +..++.|-+|+.||+.+++++-++.+...             ++.+       +|.+             .         
T Consensus       274 ~yS~SwDHTIk~WDletg~~~~~~~~~ks-------------l~~i-------~~~~-------------~---------  311 (423)
T KOG0313|consen  274 IYSVSWDHTIKVWDLETGGLKSTLTTNKS-------------LNCI-------SYSP-------------L---------  311 (423)
T ss_pred             eEeecccceEEEEEeecccceeeeecCcc-------------eeEe-------eccc-------------c---------
Confidence            55568899999999999999888765321             1111       2220             0         


Q ss_pred             cccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEE
Q 002446          317 GFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRD  396 (921)
Q Consensus       317 ~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwD  396 (921)
                                                                                     ...++.+..+..+++||
T Consensus       312 ---------------------------------------------------------------~~Ll~~gssdr~irl~D  328 (423)
T KOG0313|consen  312 ---------------------------------------------------------------SKLLASGSSDRHIRLWD  328 (423)
T ss_pred             ---------------------------------------------------------------cceeeecCCCCceeecC
Confidence                                                                           00122334566799999


Q ss_pred             CCCC---ceEEEeccCCCCeEEEEECCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccE
Q 002446          397 IVSK---NVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVI  472 (921)
Q Consensus       397 l~s~---~~l~~~~aH~~pIsaLaFSPdGt-lLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I  472 (921)
                      ..++   -+..+|.+|+.-|+++.++|... +|+++|.|++ +++||+...             ...+|.+.+.  .-+|
T Consensus       329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvRS~-------------k~plydI~~h--~DKv  392 (423)
T KOG0313|consen  329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVRST-------------KAPLYDIAGH--NDKV  392 (423)
T ss_pred             CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEeccC-------------CCcceeeccC--CceE
Confidence            8875   35678899999999999999654 7899999998 899999874             1257888653  4569


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          473 QDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       473 ~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      .++.|. ++..|++|+.|.+++||.-.+.
T Consensus       393 l~vdW~-~~~~IvSGGaD~~l~i~~~~~~  420 (423)
T KOG0313|consen  393 LSVDWN-EGGLIVSGGADNKLRIFKGSPI  420 (423)
T ss_pred             EEEecc-CCceEEeccCcceEEEeccccc
Confidence            999997 6789999999999999986653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=6.3e-11  Score=125.60  Aligned_cols=240  Identities=15%  Similarity=0.221  Sum_probs=169.6

Q ss_pred             CCCCCCCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCC--CeEEeee-eecCCEEEEEEecCCCCCccccC
Q 002446           82 RDDESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEAD--NVHDLVS-RYDGPVSFMQMLPRPITSKRSRD  157 (921)
Q Consensus        82 ~~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~--~~~elvS-~~dG~Vr~v~~lP~P~~~~~~~d  157 (921)
                      +...+|+++|-.+.|.+..  |    .+|+.|. ++.++||+....+  .++.+++ .|...||.++..|.         
T Consensus         8 ~~~~gh~~r~W~~awhp~~--g----~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~---------   72 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGK--G----VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH---------   72 (312)
T ss_pred             EeecCCCCcEEEEEeccCC--c----eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC---------
Confidence            3456899999999999911  3    4555554 6679999998522  2444443 57788999999873         


Q ss_pred             ccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCC--cEEEEEeC-CCCEEEEEEc
Q 002446          158 KFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ--SYVHMLKF-RSPIYSVRCS  234 (921)
Q Consensus       158 ~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg--~~V~tL~f-~s~V~sV~~S  234 (921)
                           ..+||.++-          |                       +++-||.-..+  +++.+|+. .+.|..|++|
T Consensus        73 -----g~~La~aSF----------D-----------------------~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws  114 (312)
T KOG0645|consen   73 -----GRYLASASF----------D-----------------------ATVVIWKKEDGEFECVATLEGHENEVKCVAWS  114 (312)
T ss_pred             -----CcEEEEeec----------c-----------------------ceEEEeecCCCceeEEeeeeccccceeEEEEc
Confidence                 136665542          2                       67889976555  68888875 6799999996


Q ss_pred             --CCEEEE-EeCCEEEEEECCCC---cEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcc
Q 002446          235 --SRVVAI-CQAAQVHCFDAATL---EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQH  308 (921)
Q Consensus       235 --~riLAV-a~d~~I~IwDl~T~---~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~  308 (921)
                        +++||. +-++.|-||.+...   ++...|..|..     +                                     
T Consensus       115 ~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-----D-------------------------------------  152 (312)
T KOG0645|consen  115 ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-----D-------------------------------------  152 (312)
T ss_pred             CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-----c-------------------------------------
Confidence              799999 56889999998743   33333333311     0                                     


Q ss_pred             cccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCC
Q 002446          309 LMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADN  388 (921)
Q Consensus       309 l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~  388 (921)
                                      |        |.++          |++          .                  -..++++.+
T Consensus       153 ----------------V--------K~V~----------WHP----------t------------------~dlL~S~SY  170 (312)
T KOG0645|consen  153 ----------------V--------KHVI----------WHP----------T------------------EDLLFSCSY  170 (312)
T ss_pred             ----------------c--------cEEE----------EcC----------C------------------cceeEEecc
Confidence                            0        0000          000          0                  012345677


Q ss_pred             CCEEEEEECC---CCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 002446          389 VGMVIVRDIV---SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR  465 (921)
Q Consensus       389 ~G~V~IwDl~---s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~R  465 (921)
                      |.+|++|+-.   .-.++++|.+|...|-+++|+|.|..|++|++|++ ++||.....                   + .
T Consensus       171 DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~-------------------~-~  229 (312)
T KOG0645|consen  171 DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTD-------------------L-S  229 (312)
T ss_pred             CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccC-------------------c-c
Confidence            8899999766   23689999999999999999999999999999998 899986643                   1 1


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          466 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       466 G~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      +.+...+++++|.  .-.||+++.|+.|+||.....
T Consensus       230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~  263 (312)
T KOG0645|consen  230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS  263 (312)
T ss_pred             hhcccceEeeeec--ccceEeccCCCEEEEEEecCC
Confidence            2223358999998  557999999999999998753

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.46  E-value=7.9e-13  Score=141.56  Aligned_cols=86  Identities=19%  Similarity=0.313  Sum_probs=75.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEe
Q 002446          409 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS  488 (921)
Q Consensus       409 H~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS  488 (921)
                      |+..|+++.+|+.|++.+|||.||. |+|||--.+              +++.++.+.|..+.|.+..|+.||+||.+++
T Consensus       260 ht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~--------------rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG  324 (430)
T KOG0640|consen  260 HTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSN--------------RCVRTIGNAHGGSEVCSAVFTKNGKYILSSG  324 (430)
T ss_pred             cccceeEEEecCCccEEEEeccCCc-EEeeccccH--------------HHHHHHHhhcCCceeeeEEEccCCeEEeecC
Confidence            6778999999999999999999998 999996654              5666777778788899999999999999999


Q ss_pred             CCCcEEEEecCCCCCceeecC
Q 002446          489 SRGTSHLFAINPLGGSVNFQP  509 (921)
Q Consensus       489 ~DgTVhVWdi~~~g~~~~l~~  509 (921)
                      +|.++++|.|.++.....+.+
T Consensus       325 ~DS~vkLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  325 KDSTVKLWEISTGRMLKEYTG  345 (430)
T ss_pred             CcceeeeeeecCCceEEEEec
Confidence            999999999999766666544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.44  E-value=1.7e-13  Score=147.00  Aligned_cols=110  Identities=23%  Similarity=0.395  Sum_probs=97.7

Q ss_pred             cccCCCCEEEEEECCCCceEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 002446          384 PDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR  462 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~~~l~~~~-aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~  462 (921)
                      +++..||.|+||-+.+|.++..|. +|+..|+||.||.|+..+.++|.|.+ +||--+..+              .++.+
T Consensus       279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t-vRiHGlKSG--------------K~LKE  343 (508)
T KOG0275|consen  279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT-VRIHGLKSG--------------KCLKE  343 (508)
T ss_pred             hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccce-EEEeccccc--------------hhHHH
Confidence            456778999999999999999998 99999999999999999999999976 899988875              56666


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 002446          463 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT  510 (921)
Q Consensus       463 l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H  510 (921)
                      + |||+.. |+...|++||.++.++|.||||+||+..+..+..+++.-
T Consensus       344 f-rGHsSy-vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~  389 (508)
T KOG0275|consen  344 F-RGHSSY-VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL  389 (508)
T ss_pred             h-cCcccc-ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC
Confidence            6 787654 999999999999999999999999999998887777643

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=1.7e-11  Score=145.71  Aligned_cols=241  Identities=15%  Similarity=0.261  Sum_probs=165.2

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      .|++..+-++||.   +|.   -++.+|.++-+++|++....+--+.+..+...|.+++.--                ..
T Consensus        11 aht~G~t~i~~d~---~ge---fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s----------------~~   68 (933)
T KOG1274|consen   11 AHTGGLTLICYDP---DGE---FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS----------------NH   68 (933)
T ss_pred             hccCceEEEEEcC---CCC---EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc----------------cc
Confidence            5788899999998   774   5555666666999999875233344444445566554321                13


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEE-eCCCCEEEEEE--cCCEEEE-E
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHML-KFRSPIYSVRC--SSRVVAI-C  241 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL-~f~s~V~sV~~--S~riLAV-a  241 (921)
                      ++++..                                 +++|.+|....++.=..| +|.-++..+++  +++++|. +
T Consensus        69 f~~~s~---------------------------------~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaags  115 (933)
T KOG1274|consen   69 FLTGSE---------------------------------QNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGS  115 (933)
T ss_pred             eEEeec---------------------------------cceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeec
Confidence            333332                                 278999988887643222 34455666666  4678877 5


Q ss_pred             eCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCC
Q 002446          242 QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN  321 (921)
Q Consensus       242 ~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~  321 (921)
                      .|..|+|-++.+....+.+..|.-               |+-    -|-|.             |+              
T Consensus       116 dD~~vK~~~~~D~s~~~~lrgh~a---------------pVl----~l~~~-------------p~--------------  149 (933)
T KOG1274|consen  116 DDTAVKLLNLDDSSQEKVLRGHDA---------------PVL----QLSYD-------------PK--------------  149 (933)
T ss_pred             CceeEEEEeccccchheeecccCC---------------cee----eeeEc-------------CC--------------
Confidence            667999999999888888776632               110    12222             11              


Q ss_pred             CcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCc
Q 002446          322 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN  401 (921)
Q Consensus       322 g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~  401 (921)
                      +..                                                          ++....+|+|+|||++++.
T Consensus       150 ~~f----------------------------------------------------------LAvss~dG~v~iw~~~~~~  171 (933)
T KOG1274|consen  150 GNF----------------------------------------------------------LAVSSCDGKVQIWDLQDGI  171 (933)
T ss_pred             CCE----------------------------------------------------------EEEEecCceEEEEEcccch
Confidence            111                                                          1122457999999999987


Q ss_pred             eEEEeccC--------CCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEE
Q 002446          402 VIAQFRAH--------KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ  473 (921)
Q Consensus       402 ~l~~~~aH--------~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~  473 (921)
                      +..++.+-        ...+..++|+|+|-.||....|++ |++|+....              .+.++|+--+..+.+.
T Consensus       172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~w--------------e~~f~Lr~~~~ss~~~  236 (933)
T KOG1274|consen  172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGW--------------ELQFKLRDKLSSSKFS  236 (933)
T ss_pred             hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCc--------------eeheeecccccccceE
Confidence            76666521        356777999999666777777766 899998865              5667886555556699


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          474 DISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       474 sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                      +++|||+|+|||+++.||-|-|||..+
T Consensus       237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  237 DLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            999999999999999999999999985

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.43  E-value=1.2e-11  Score=130.76  Aligned_cols=188  Identities=16%  Similarity=0.191  Sum_probs=135.9

Q ss_pred             cEEEEEECCCCcEEEEEeC-CCCEEEEEEc--CCEEE-EEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccc
Q 002446          206 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP  281 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S--~riLA-Va~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~p  281 (921)
                      .+..+|=...|+.+-++.- ...|+.+.++  .+.|+ -+.|.++++||..+++++.++++...+..+           .
T Consensus        32 ~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~-----------~  100 (327)
T KOG0643|consen   32 STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRV-----------D  100 (327)
T ss_pred             CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEE-----------e
Confidence            4466888889999999975 6789988885  34444 488999999999999999998763111000           0


Q ss_pred             eeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCC
Q 002446          282 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD  361 (921)
Q Consensus       282 iAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~  361 (921)
                      +..+...+.+...+                                                                  
T Consensus       101 F~~~gn~~l~~tD~------------------------------------------------------------------  114 (327)
T KOG0643|consen  101 FSFGGNLILASTDK------------------------------------------------------------------  114 (327)
T ss_pred             eccCCcEEEEEehh------------------------------------------------------------------
Confidence            11111111111000                                                                  


Q ss_pred             CcCCcccccCCCCCCCcccCcccccCCCCEEEEEECC-------CCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCE
Q 002446          362 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-------SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHN  434 (921)
Q Consensus       362 ~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~-------s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~  434 (921)
                                             .-+..+.|.++|+.       +..++..+..+.+.|+.+-|+|-|+.|++|..||. 
T Consensus       115 -----------------------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~-  170 (327)
T KOG0643|consen  115 -----------------------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS-  170 (327)
T ss_pred             -----------------------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc-
Confidence                                   00223567777766       55678888889999999999999999999999997 


Q ss_pred             EEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 002446          435 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP  509 (921)
Q Consensus       435 IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~  509 (921)
                      |++||+.++              ..+..-.+-| .+.|++|.||||..++.++|.|.|.++||+.+...+.++.+
T Consensus       171 is~~da~~g--------------~~~v~s~~~h-~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t  230 (327)
T KOG0643|consen  171 ISIYDARTG--------------KELVDSDEEH-SSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT  230 (327)
T ss_pred             EEEEEcccC--------------ceeeechhhh-ccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence            999999986              2333332333 34699999999999999999999999999998766666654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.43  E-value=5e-13  Score=153.76  Aligned_cols=188  Identities=15%  Similarity=0.272  Sum_probs=141.9

Q ss_pred             cEEEEEECCCCc------EEEEEeC-CCCEEEEEE--cC-CEEEEEeCCEEEEEECCCC--cEEEEEecCCCccCCCCCC
Q 002446          206 TVVHFYSLRSQS------YVHMLKF-RSPIYSVRC--SS-RVVAICQAAQVHCFDAATL--EIEYAILTNPIVMGHPSAG  273 (921)
Q Consensus       206 ~tVrIWDL~Tg~------~V~tL~f-~s~V~sV~~--S~-riLAVa~d~~I~IwDl~T~--~~l~tL~t~p~~~g~p~~~  273 (921)
                      +.|++|+.....      ++.+++. ...|.++..  ++ .+|.++.|.+|++|++...  -|+.+|.+|.+..      
T Consensus        47 g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYV------  120 (735)
T KOG0308|consen   47 GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYV------  120 (735)
T ss_pred             ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchh------
Confidence            789999986553      3555554 457777666  34 4555688999999999876  5677777775421      


Q ss_pred             CCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCcccccccc
Q 002446          274 GIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ  353 (921)
Q Consensus       274 g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~  353 (921)
                                   ..|||....                          .                               
T Consensus       121 -------------kcla~~ak~--------------------------~-------------------------------  130 (735)
T KOG0308|consen  121 -------------KCLAYIAKN--------------------------N-------------------------------  130 (735)
T ss_pred             -------------eeeeecccC--------------------------c-------------------------------
Confidence                         124553110                          0                               


Q ss_pred             ccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC--ceEE--------Eec-cCCCCeEEEEECCCC
Q 002446          354 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIA--------QFR-AHKSPISALCFDPSG  422 (921)
Q Consensus       354 y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~--~~l~--------~~~-aH~~pIsaLaFSPdG  422 (921)
                                                 -.+++++-++.|.|||+.++  +.++        .+. +|..+|.+|+.++.|
T Consensus       131 ---------------------------~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~  183 (735)
T KOG0308|consen  131 ---------------------------ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG  183 (735)
T ss_pred             ---------------------------eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence                                       01234456789999999876  2222        233 888999999999999


Q ss_pred             CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 002446          423 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG  502 (921)
Q Consensus       423 tlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g  502 (921)
                      +++++|+..+- +++||-.+.              ..+.+|+ ||+.. |.+|-.++||+.+.++|+||||+|||+....
T Consensus       184 t~ivsGgtek~-lr~wDprt~--------------~kimkLr-GHTdN-Vr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr  246 (735)
T KOG0308|consen  184 TIIVSGGTEKD-LRLWDPRTC--------------KKIMKLR-GHTDN-VRVLLVNDDGTRLLSASSDGTIRLWDLGQQR  246 (735)
T ss_pred             eEEEecCcccc-eEEeccccc--------------cceeeee-ccccc-eEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence            99999999975 999998875              5667774 88764 9999999999999999999999999999998


Q ss_pred             CceeecCCCCC
Q 002446          503 GSVNFQPTDAN  513 (921)
Q Consensus       503 ~~~~l~~H~~~  513 (921)
                      +..++..|...
T Consensus       247 Cl~T~~vH~e~  257 (735)
T KOG0308|consen  247 CLATYIVHKEG  257 (735)
T ss_pred             eeeeEEeccCc
Confidence            99999999665

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.42  E-value=9.6e-12  Score=138.89  Aligned_cols=114  Identities=14%  Similarity=0.240  Sum_probs=86.5

Q ss_pred             cccCCCCEEEEEECCCC-ceEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 002446          384 PDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY  461 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~-~~l~~~~aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~  461 (921)
                      ++++.|++|.+||+++. +++.+|.+|...|..|.|||. -+.||+++.|++ ++|||+..-....+......+....+ 
T Consensus       289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig~eq~~eda~dgppEll-  366 (422)
T KOG0264|consen  289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIGEEQSPEDAEDGPPELL-  366 (422)
T ss_pred             EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccccccChhhhccCCccee-
Confidence            45567899999999985 578999999999999999995 679999999998 89999976311111111111122333 


Q ss_pred             EEecccccccEEEEEEccCCCE-EEEEeCCCcEEEEecCC
Q 002446          462 RLQRGLTNAVIQDISFSDDSNW-IMISSSRGTSHLFAINP  500 (921)
Q Consensus       462 ~l~RG~t~a~I~sIaFSPDg~~-LAsgS~DgTVhVWdi~~  500 (921)
                      =.++||+ ++|.+++|.|+-.| ||+++.|+.++||+...
T Consensus       367 F~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  367 FIHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             EEecCcc-cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            3467765 57999999999888 56789999999999874

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.41  E-value=1e-11  Score=139.96  Aligned_cols=111  Identities=21%  Similarity=0.252  Sum_probs=82.0

Q ss_pred             ccccCCCCEEEEEECCCC--ceEEEe-ccCCC--CeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce
Q 002446          383 FPDADNVGMVIVRDIVSK--NVIAQF-RAHKS--PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY  457 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~--~~l~~~-~aH~~--pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~  457 (921)
                      ++.+..+|.|.+||..+.  ++...+ ++|..  .|+||+||+||++|++-+.|++ ++|||+...             .
T Consensus       332 iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~-------------k  397 (641)
T KOG0772|consen  332 IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQF-------------K  397 (641)
T ss_pred             hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecccc-------------c
Confidence            345567899999998653  233333 49987  9999999999999999999997 899999874             1


Q ss_pred             eEEEEEeccc-ccccEEEEEEccCCCEEEEEeC------CCcEEEEecCCCCCceeec
Q 002446          458 VHLYRLQRGL-TNAVIQDISFSDDSNWIMISSS------RGTSHLFAINPLGGSVNFQ  508 (921)
Q Consensus       458 ~~l~~l~RG~-t~a~I~sIaFSPDg~~LAsgS~------DgTVhVWdi~~~g~~~~l~  508 (921)
                      ..|... .|. +...-++++||||.+.|++|++      -|++.+||-.++.....+.
T Consensus       398 kpL~~~-tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~  454 (641)
T KOG0772|consen  398 KPLNVR-TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID  454 (641)
T ss_pred             cchhhh-cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence            223222 232 2233678999999999999875      4678888887776555553

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.41  E-value=8.4e-13  Score=141.67  Aligned_cols=206  Identities=14%  Similarity=0.190  Sum_probs=149.0

Q ss_pred             CcEEEEEECCCCcEEEEEeC---------CCCEEEEEEcC--CEEEE-EeCCEEEEEECCCCcEEEEEec-CCCccCCCC
Q 002446          205 PTVVHFYSLRSQSYVHMLKF---------RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYAILT-NPIVMGHPS  271 (921)
Q Consensus       205 ~~tVrIWDL~Tg~~V~tL~f---------~s~V~sV~~S~--riLAV-a~d~~I~IwDl~T~~~l~tL~t-~p~~~g~p~  271 (921)
                      ++.|.+||..+|+..+.|++         ..+|..|.|++  .+||. +.|++|++|.+.|++|++.++. |..      
T Consensus       234 DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk------  307 (508)
T KOG0275|consen  234 DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK------  307 (508)
T ss_pred             cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc------
Confidence            37799999999999998875         46899999985  68888 8899999999999999887752 211      


Q ss_pred             CCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCcccccc
Q 002446          272 AGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL  351 (921)
Q Consensus       272 ~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~l  351 (921)
                              +..+     |.|+-                                     +                    
T Consensus       308 --------Gvt~-----l~FSr-------------------------------------D--------------------  317 (508)
T KOG0275|consen  308 --------GVTC-----LSFSR-------------------------------------D--------------------  317 (508)
T ss_pred             --------CeeE-----EEEcc-------------------------------------C--------------------
Confidence                    1111     22220                                     0                    


Q ss_pred             ccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecC
Q 002446          352 SQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ  431 (921)
Q Consensus       352 s~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~D  431 (921)
                                                  +.++.++..|.+|+|.-+.+|+++..|++|++-|+...|++||..+++||.|
T Consensus       318 ----------------------------~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  318 ----------------------------NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             ----------------------------cchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence                                        0012345667899999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCCCCCC----CCcc-----------CCCC---------------ceeEEEEEecccc-cccEEEEEEccC
Q 002446          432 GHNINIFKIIPGILGT----SSAC-----------DAGT---------------SYVHLYRLQRGLT-NAVIQDISFSDD  480 (921)
Q Consensus       432 Gt~IrIWdi~~g~~~~----~s~~-----------~~~~---------------~~~~l~~l~RG~t-~a~I~sIaFSPD  480 (921)
                      |+ |+||+..+..+-.    .+..           .+..               .+.-+..+..|.. .....+.+.||-
T Consensus       370 gt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpk  448 (508)
T KOG0275|consen  370 GT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPK  448 (508)
T ss_pred             cc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCC
Confidence            98 8999998752200    0000           0000               0011111211111 112456789999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          481 SNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       481 g~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      |.|+.+.+.|+.+..|.+.+++-..++..|...+.
T Consensus       449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvI  483 (508)
T KOG0275|consen  449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVI  483 (508)
T ss_pred             CcEEEEEccCcEEEEEEeecCceeeeeeccccccc
Confidence            99999999999999999999888888888765544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=8.8e-11  Score=126.24  Aligned_cols=275  Identities=18%  Similarity=0.239  Sum_probs=163.4

Q ss_pred             CCCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCC-CCeEEeee--eecCCEEEEEEecCCCCCccccCccc
Q 002446           84 DESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEA-DNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFA  160 (921)
Q Consensus        84 ~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~-~~~~elvS--~~dG~Vr~v~~lP~P~~~~~~~d~F~  160 (921)
                      +.+|+|-|..+.||.   -|   |++.....+..++|||.+.. ++..-.-+  .|+|.|--+...+ |-          
T Consensus         9 ~s~h~DlihdVs~D~---~G---RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAh-PE----------   71 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDF---YG---RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAH-PE----------   71 (361)
T ss_pred             ccCCcceeeeeeecc---cC---ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecC-cc----------
Confidence            356899999999999   55   56666666778999996443 44433333  4678877777764 21          


Q ss_pred             cCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEEC-----CCC--c--EEEEEe-CCCCEEE
Q 002446          161 EVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSL-----RSQ--S--YVHMLK-FRSPIYS  230 (921)
Q Consensus       161 ~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL-----~Tg--~--~V~tL~-f~s~V~s  230 (921)
                       -...||.|+-          |                       ++|+||.-     +.+  +  ...+|. -++.|++
T Consensus        72 -fGqvvA~cS~----------D-----------------------rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~D  117 (361)
T KOG2445|consen   72 -FGQVVATCSY----------D-----------------------RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTD  117 (361)
T ss_pred             -ccceEEEEec----------C-----------------------CceeeeeecccccccccceeEEEEEeecCCcceeE
Confidence             1357888873          2                       67888854     221  1  223333 3789999


Q ss_pred             EEEcCC-----EEEEEeCCEEEEEECCCCcEEEEEe-cCCC--ccCCCCCCCCCccccceeecCceEEecCCCceecCCC
Q 002446          231 VRCSSR-----VVAICQAAQVHCFDAATLEIEYAIL-TNPI--VMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDG  302 (921)
Q Consensus       231 V~~S~r-----iLAVa~d~~I~IwDl~T~~~l~tL~-t~p~--~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~G  302 (921)
                      |.|.++     +.++..++.++||++-..-.+.... .|..  ....|+.    ......+             ..|+.+
T Consensus       118 V~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~----~~~~~~C-------------vsWn~s  180 (361)
T KOG2445|consen  118 VKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK----NKQPCFC-------------VSWNPS  180 (361)
T ss_pred             EEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc----ccCcceE-------------Eeeccc
Confidence            999753     3344788999999987643222110 1100  0000000    0000011             112222


Q ss_pred             ccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCc
Q 002446          303 RVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGH  382 (921)
Q Consensus       303 rvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~  382 (921)
                      |.+++.+                           |     +|                         +.           
T Consensus       181 r~~~p~i---------------------------A-----vg-------------------------s~-----------  192 (361)
T KOG2445|consen  181 RMHEPLI---------------------------A-----VG-------------------------SD-----------  192 (361)
T ss_pred             cccCceE---------------------------E-----EE-------------------------cc-----------
Confidence            2111100                           0     00                         00           


Q ss_pred             ccccCCCCEEEEEECCCC----ceEEEeccCCCCeEEEEECCC-C---CEEEEEecCCCEEEEEeCCCCCC-----CCCC
Q 002446          383 FPDADNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDPS-G---ILLVTASVQGHNINIFKIIPGIL-----GTSS  449 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~----~~l~~~~aH~~pIsaLaFSPd-G---tlLATaS~DGt~IrIWdi~~g~~-----~~~s  449 (921)
                       -+...-+.++||.....    ..++++..|+.||++|+|.|+ |   .+||+|+.||  |+||.+..-..     +...
T Consensus       193 -e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~  269 (361)
T KOG2445|consen  193 -EDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLA  269 (361)
T ss_pred             -cCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccC
Confidence             01223467888876543    356788899999999999996 4   4899999998  89999985311     0000


Q ss_pred             ccCC-CCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 002446          450 ACDA-GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       450 ~~~~-~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                      .... ...+..+..+  +.+...|+.+.|.-.|..|+++++||+||+|..+
T Consensus       270 ~~~~~~l~v~~vs~~--~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  270 PDLMTDLPVEKVSEL--DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             CCCccccceEEeeec--cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            0000 1122222223  3345579999999999999999999999999865

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.40  E-value=6.7e-12  Score=145.12  Aligned_cols=214  Identities=18%  Similarity=0.342  Sum_probs=143.1

Q ss_pred             cEEEEEECCCCcEEEEEe-CCCCEEEEEEc-----CCEEEE-EeCCEEEEEECC-CCcEEEEEecCCCccCCCCCCCCCc
Q 002446          206 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS-----SRVVAI-CQAAQVHCFDAA-TLEIEYAILTNPIVMGHPSAGGIGI  277 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S-----~riLAV-a~d~~I~IwDl~-T~~~l~tL~t~p~~~g~p~~~g~~i  277 (921)
                      +++|+|||..-++...++ +.+.|..+.++     .++||. +-++-|+|||+. ...+++++..|...          +
T Consensus       481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss----------I  550 (1080)
T KOG1408|consen  481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS----------I  550 (1080)
T ss_pred             CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc----------e
Confidence            789999999888887776 47899999997     367887 567899999986 45667788776431          1


Q ss_pred             cccceeec---CceEEecCCCcee------cCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccc
Q 002446          278 GYGPLAVG---PRWLAYSGSPVVV------SNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGY  348 (921)
Q Consensus       278 ~~~piAlg---pRwLAyas~~~~~------s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~  348 (921)
                      ..-.+|-+   -+.|....++.+.      ...|++.|.+-             .++       +|      .++-|+. 
T Consensus       551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t-------------~t~-------~k------tTlYDm~-  603 (1080)
T KOG1408|consen  551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHT-------------QTL-------SK------TTLYDMA-  603 (1080)
T ss_pred             eEEEEeecCCceEEEeccCchhhheehhccccCceeccccc-------------ccc-------cc------ceEEEee-
Confidence            00011110   0222222221110      01111111100             000       00      0011111 


Q ss_pred             cccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEec---cCCCCeEEEEECCCCCEE
Q 002446          349 KKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR---AHKSPISALCFDPSGILL  425 (921)
Q Consensus       349 k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~---aH~~pIsaLaFSPdGtlL  425 (921)
                                          +-|.+       ++.+.+..|..|+|||+.+++.++.|+   .|.+..-.|..+|+|-||
T Consensus       604 --------------------Vdp~~-------k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~  656 (1080)
T KOG1408|consen  604 --------------------VDPTS-------KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYL  656 (1080)
T ss_pred             --------------------eCCCc-------ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEE
Confidence                                11111       245667889999999999999999998   566778889999999999


Q ss_pred             EEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          426 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       426 ATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                      ||...|.+ +-+||.-.+              +++.+. .||..+ |+.+.|++|.++|.+.+.||.|.||.+..
T Consensus       657 atScsdkt-l~~~Df~sg--------------EcvA~m-~GHsE~-VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  657 ATSCSDKT-LCFVDFVSG--------------ECVAQM-TGHSEA-VTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEeecCCc-eEEEEeccc--------------hhhhhh-cCcchh-eeeeeecccchhheeecCCceEEEEECch
Confidence            99999987 899999876              344444 365544 99999999999999999999999999965

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.40  E-value=2.4e-12  Score=145.07  Aligned_cols=113  Identities=16%  Similarity=0.329  Sum_probs=85.9

Q ss_pred             cccccCCCCEEEEEECCCC-ceEEEec-----cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCC
Q 002446          382 HFPDADNVGMVIVRDIVSK-NVIAQFR-----AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT  455 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~-~~l~~~~-----aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~  455 (921)
                      .|.++..||+++|||+..- +.+..|+     +-.-+++.++|+|||+++|+|..||. |.+|+...-            
T Consensus       283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~------------  349 (641)
T KOG0772|consen  283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSR------------  349 (641)
T ss_pred             ceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCc------------
Confidence            5677889999999999764 3333343     23358899999999999999999996 999997432            


Q ss_pred             ceeEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          456 SYVHLYRLQRGLTN-AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       456 ~~~~l~~l~RG~t~-a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                      .++..+.++..|.. ..|+||+||+||++|++-+.|+|++||||..+.+....
T Consensus       350 ~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~  402 (641)
T KOG0772|consen  350 TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV  402 (641)
T ss_pred             ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence            11223333333433 24999999999999999999999999999988766543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.40  E-value=2.9e-11  Score=134.37  Aligned_cols=226  Identities=14%  Similarity=0.216  Sum_probs=157.0

Q ss_pred             eEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccc
Q 002446          108 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA  187 (921)
Q Consensus       108 ~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~  187 (921)
                      .++..|-+...-++|... +....++.+|.-.|..+.+.|.                +..+..+.               
T Consensus       233 ~ilTGG~d~~av~~d~~s-~q~l~~~~Gh~kki~~v~~~~~----------------~~~v~~aS---------------  280 (506)
T KOG0289|consen  233 KILTGGEDKTAVLFDKPS-NQILATLKGHTKKITSVKFHKD----------------LDTVITAS---------------  280 (506)
T ss_pred             cceecCCCCceEEEecch-hhhhhhccCcceEEEEEEeccc----------------hhheeecC---------------
Confidence            455555566899999887 4556677778777777766542                11111111               


Q ss_pred             cCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-CCCCEEEEEE--cCCEEEE-EeCCEEEEEECCCCcEEEEEecC
Q 002446          188 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRC--SSRVVAI-CQAAQVHCFDAATLEIEYAILTN  263 (921)
Q Consensus       188 ~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~--S~riLAV-a~d~~I~IwDl~T~~~l~tL~t~  263 (921)
                                      ....|++|+.....+...+. +..+|..+..  ++.++.. +.++++.+.|++++.++-.....
T Consensus       281 ----------------ad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~  344 (506)
T KOG0289|consen  281 ----------------ADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE  344 (506)
T ss_pred             ----------------CcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence                            12679999998777666655 4678988888  4677665 67789999999999876544321


Q ss_pred             CCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEec
Q 002446          264 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL  343 (921)
Q Consensus       264 p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~l  343 (921)
                      ..               .+++  ..++|             +|+                                    
T Consensus       345 ~s---------------~v~~--ts~~f-------------HpD------------------------------------  358 (506)
T KOG0289|consen  345 TS---------------DVEY--TSAAF-------------HPD------------------------------------  358 (506)
T ss_pred             cc---------------ccee--EEeeE-------------cCC------------------------------------
Confidence            00               0110  00111             122                                    


Q ss_pred             CCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCC
Q 002446          344 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI  423 (921)
Q Consensus       344 Gd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGt  423 (921)
                                        +               .   .|..+..+|.|+|||+.++..++.|.+|+++|.+++|+-+|-
T Consensus       359 ------------------g---------------L---ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY  402 (506)
T KOG0289|consen  359 ------------------G---------------L---IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY  402 (506)
T ss_pred             ------------------c---------------e---EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCce
Confidence                              1               0   122345679999999999999999999999999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 002446          424 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       424 lLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                      +|||+.+|+. |++||+...            .....+.+...   ..|.+++|.+.|+||++++.|=+|++++-.
T Consensus       403 ~Lat~add~~-V~lwDLRKl------------~n~kt~~l~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~  462 (506)
T KOG0289|consen  403 WLATAADDGS-VKLWDLRKL------------KNFKTIQLDEK---KEVNSLSFDQSGTYLGIAGSDLQVYICKKK  462 (506)
T ss_pred             EEEEEecCCe-EEEEEehhh------------cccceeecccc---ccceeEEEcCCCCeEEeecceeEEEEEecc
Confidence            9999999986 999999874            11222333222   248999999999999999888888887743

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.39  E-value=6.8e-11  Score=124.81  Aligned_cols=222  Identities=13%  Similarity=0.227  Sum_probs=154.4

Q ss_pred             cccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCC
Q 002446           98 KLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCG  177 (921)
Q Consensus        98 ~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~  177 (921)
                      |+.++......+.....+..+++||+-.. ++...+...-+.+. +...|.              ...+++...      
T Consensus        69 ql~w~~~~~d~~atas~dk~ir~wd~r~~-k~~~~i~~~~eni~-i~wsp~--------------g~~~~~~~k------  126 (313)
T KOG1407|consen   69 QLCWDPKHPDLFATASGDKTIRIWDIRSG-KCTARIETKGENIN-ITWSPD--------------GEYIAVGNK------  126 (313)
T ss_pred             hheeCCCCCcceEEecCCceEEEEEeccC-cEEEEeeccCcceE-EEEcCC--------------CCEEEEecC------
Confidence            33333333346666666788999999874 44333333334433 335542              123333321      


Q ss_pred             ccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCC
Q 002446          178 TKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATL  254 (921)
Q Consensus       178 ~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAV-a~d~~I~IwDl~T~  254 (921)
                                                 +..|.+.|.++.+.+++.+|+-.+..+.++  ..++.. ..-+.|.|...-.+
T Consensus       127 ---------------------------dD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL  179 (313)
T KOG1407|consen  127 ---------------------------DDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL  179 (313)
T ss_pred             ---------------------------cccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccc
Confidence                                       145889999999999999999888888885  344433 45589999998899


Q ss_pred             cEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcch
Q 002446          255 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK  334 (921)
Q Consensus       255 ~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK  334 (921)
                      +.+++|..||.              +.+++     .|.             |.              |+           
T Consensus       180 kpv~si~AH~s--------------nCicI-----~f~-------------p~--------------Gr-----------  202 (313)
T KOG1407|consen  180 KPVQSIKAHPS--------------NCICI-----EFD-------------PD--------------GR-----------  202 (313)
T ss_pred             ccccccccCCc--------------ceEEE-----EEC-------------CC--------------Cc-----------
Confidence            99999988853              12221     222             11              10           


Q ss_pred             hhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeE
Q 002446          335 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS  414 (921)
Q Consensus       335 ~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs  414 (921)
                                                                     .++.+..|-.|.+||+...-++..|..|.-||.
T Consensus       203 -----------------------------------------------yfA~GsADAlvSLWD~~ELiC~R~isRldwpVR  235 (313)
T KOG1407|consen  203 -----------------------------------------------YFATGSADALVSLWDVDELICERCISRLDWPVR  235 (313)
T ss_pred             -----------------------------------------------eEeeccccceeeccChhHhhhheeeccccCceE
Confidence                                                           122334566799999999999999999999999


Q ss_pred             EEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 002446          415 ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR  490 (921)
Q Consensus       415 aLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~D  490 (921)
                      .|+||.||+|||+||+| +.|-|=++.+|              ..+++.+   ..+.-..+||.|...+||-+.+|
T Consensus       236 TlSFS~dg~~lASaSED-h~IDIA~vetG--------------d~~~eI~---~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  236 TLSFSHDGRMLASASED-HFIDIAEVETG--------------DRVWEIP---CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             EEEeccCcceeeccCcc-ceEEeEecccC--------------CeEEEee---ccCCceeEEecCCCceeeEEecC
Confidence            99999999999999999 56888888876              3455553   23457899999999999988765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.39  E-value=5e-12  Score=145.64  Aligned_cols=107  Identities=14%  Similarity=0.121  Sum_probs=91.2

Q ss_pred             cccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          384 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      ++++..+.+++||-.+++.+..+++|+..|.+|-.++||+.+++||.||+ ||+||+...              +++.++
T Consensus       187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQ--------------rCl~T~  251 (735)
T KOG0308|consen  187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQ--------------RCLATY  251 (735)
T ss_pred             EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeecccc--------------ceeeeE
Confidence            45566789999999999999999999999999999999999999999998 999999864              556565


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          464 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                      . -|... |+++.-+|+=+.+.+|+.||.|..=|+..+.....+
T Consensus       252 ~-vH~e~-VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli  293 (735)
T KOG0308|consen  252 I-VHKEG-VWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI  293 (735)
T ss_pred             E-eccCc-eEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence            3 33333 999999999999999999999999999987554443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=2.4e-11  Score=143.79  Aligned_cols=176  Identities=19%  Similarity=0.242  Sum_probs=121.2

Q ss_pred             CCCcEEEEEECCCCcEEEEEeCCCCEEEEEEcC---CEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCcc
Q 002446          203 SVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG  278 (921)
Q Consensus       203 ~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S~---riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~  278 (921)
                      ..+.|||||++...+|++++.++.-|.+|+|++   |+++. ++|++|+||++..-+....-+....             
T Consensus       387 SMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~l-------------  453 (712)
T KOG0283|consen  387 SMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDL-------------  453 (712)
T ss_pred             cccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhh-------------
Confidence            356999999999999999999999999999984   66665 9999999999987654333221100             


Q ss_pred             ccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccc
Q 002446          279 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF  358 (921)
Q Consensus       279 ~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~  358 (921)
                      +.  |     +.|.                                                                  
T Consensus       454 IT--A-----vcy~------------------------------------------------------------------  460 (712)
T KOG0283|consen  454 IT--A-----VCYS------------------------------------------------------------------  460 (712)
T ss_pred             he--e-----EEec------------------------------------------------------------------
Confidence            00  0     1121                                                                  


Q ss_pred             cCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEec---------cCCCCeEEEEECCCCC--EEEE
Q 002446          359 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR---------AHKSPISALCFDPSGI--LLVT  427 (921)
Q Consensus       359 ~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~---------aH~~pIsaLaFSPdGt--lLAT  427 (921)
                       |+|.+.             +     -+...|.+++|+....+....+.         .|. .|+.+.|.|.-.  +|+|
T Consensus       461 -PdGk~a-------------v-----IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT  520 (712)
T KOG0283|consen  461 -PDGKGA-------------V-----IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVT  520 (712)
T ss_pred             -cCCceE-------------E-----EEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEe
Confidence             222111             1     12446889999988877665543         233 799999998533  6665


Q ss_pred             EecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccccccc-EEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          428 ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       428 aS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~-I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                       |.|-+ |||||..+.              ..+.+| +|+.+.. -...+|+.||++|+++|+|.-|+||++...
T Consensus       521 -SnDSr-IRI~d~~~~--------------~lv~Kf-KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  521 -SNDSR-IRIYDGRDK--------------DLVHKF-KGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             -cCCCc-eEEEeccch--------------hhhhhh-cccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence             56656 999999653              122233 2332222 346789999999999999999999998654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.37  E-value=1.4e-10  Score=123.15  Aligned_cols=181  Identities=14%  Similarity=0.173  Sum_probs=124.6

Q ss_pred             cEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEE-E-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccc
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVA-I-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP  281 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S--~riLA-V-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~p  281 (921)
                      ++|++||+.+++.++.+.....+..+.++  ++.++ + ..++.|++||+.+++.+..+..+..                
T Consensus        11 ~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----------------   74 (300)
T TIGR03866        11 NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD----------------   74 (300)
T ss_pred             CEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC----------------
Confidence            68999999999999999876667788886  45553 3 3567999999999887655432210                


Q ss_pred             eeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCC
Q 002446          282 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD  361 (921)
Q Consensus       282 iAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~  361 (921)
                          ++.+++..             +              |..+                                    
T Consensus        75 ----~~~~~~~~-------------~--------------g~~l------------------------------------   87 (300)
T TIGR03866        75 ----PELFALHP-------------N--------------GKIL------------------------------------   87 (300)
T ss_pred             ----ccEEEECC-------------C--------------CCEE------------------------------------
Confidence                11223321             0              1100                                    


Q ss_pred             CcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCC
Q 002446          362 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII  441 (921)
Q Consensus       362 ~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~  441 (921)
                                           ++....++.|++||+.+.+.+..++.+ ..+.+++|+|||++|++++.++..+.+||..
T Consensus        88 ---------------------~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866        88 ---------------------YIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTK  145 (300)
T ss_pred             ---------------------EEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence                                 011233578999999998888888643 3468899999999999999887767888987


Q ss_pred             CCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCCceeec
Q 002446          442 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQ  508 (921)
Q Consensus       442 ~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS-~DgTVhVWdi~~~g~~~~l~  508 (921)
                      ++              ..+..+..+   ..+..++|+|||++|++++ .+++|++||+.+......+.
T Consensus       146 ~~--------------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~  196 (300)
T TIGR03866       146 TY--------------EIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT  196 (300)
T ss_pred             CC--------------eEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence            64              222222222   2367899999999986554 59999999998764444443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.36  E-value=1.1e-10  Score=127.71  Aligned_cols=133  Identities=17%  Similarity=0.289  Sum_probs=106.1

Q ss_pred             cEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccc
Q 002446          206 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP  281 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~p  281 (921)
                      ..-.+|++.+|+...++. ++..|..+.||  +.+||. .++++|.||+..|+.....+...               .+-
T Consensus        86 D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e---------------~~d  150 (399)
T KOG0296|consen   86 DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE---------------VED  150 (399)
T ss_pred             ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc---------------cCc
Confidence            346799999999888885 68899999997  678888 68899999999999887777521               011


Q ss_pred             eeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCC
Q 002446          282 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD  361 (921)
Q Consensus       282 iAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~  361 (921)
                      |    .||-...             .              +.                                      
T Consensus       151 i----eWl~WHp-------------~--------------a~--------------------------------------  161 (399)
T KOG0296|consen  151 I----EWLKWHP-------------R--------------AH--------------------------------------  161 (399)
T ss_pred             e----EEEEecc-------------c--------------cc--------------------------------------
Confidence            2    3544321             0              00                                      


Q ss_pred             CcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCC
Q 002446          362 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII  441 (921)
Q Consensus       362 ~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~  441 (921)
                                          .++.+..+|.|-+|.+.++...+.|.+|+.++++=.|.|||+.++++..||+ |++|+..
T Consensus       162 --------------------illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt-i~~Wn~k  220 (399)
T KOG0296|consen  162 --------------------ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT-IIVWNPK  220 (399)
T ss_pred             --------------------EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce-EEEEecC
Confidence                                1223466899999999999999999999999999999999999999999998 8999998


Q ss_pred             CC
Q 002446          442 PG  443 (921)
Q Consensus       442 ~g  443 (921)
                      ++
T Consensus       221 tg  222 (399)
T KOG0296|consen  221 TG  222 (399)
T ss_pred             CC
Confidence            86

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=2.8e-10  Score=122.87  Aligned_cols=244  Identities=15%  Similarity=0.272  Sum_probs=164.3

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEc--cCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCC
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGY--RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVR  163 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~--~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~r  163 (921)
                      ..|=.|.-++|-.   ..   ..++....  ++.+|..++.+ .+....+.+|...|..+.+.|.       +|.|    
T Consensus        54 skkyG~~~~~Fth---~~---~~~i~sStk~d~tIryLsl~d-NkylRYF~GH~~~V~sL~~sP~-------~d~F----  115 (311)
T KOG1446|consen   54 SKKYGVDLACFTH---HS---NTVIHSSTKEDDTIRYLSLHD-NKYLRYFPGHKKRVNSLSVSPK-------DDTF----  115 (311)
T ss_pred             cccccccEEEEec---CC---ceEEEccCCCCCceEEEEeec-CceEEEcCCCCceEEEEEecCC-------CCeE----
Confidence            4566788888877   33   13444443  56799999999 5677789999999999999873       2333    


Q ss_pred             CEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCC-CCEEEEEEcCCEEEEEe
Q 002446          164 PLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFR-SPIYSVRCSSRVVAICQ  242 (921)
Q Consensus       164 PLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~-s~V~sV~~S~riLAVa~  242 (921)
                           .+.+                               .+++||+||+++.++...+... .+|.+..-.+-++|++.
T Consensus       116 -----lS~S-------------------------------~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~  159 (311)
T KOG1446|consen  116 -----LSSS-------------------------------LDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALAN  159 (311)
T ss_pred             -----Eecc-------------------------------cCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEec
Confidence                 1111                               2378999999999998888875 46665555677888866


Q ss_pred             CC-EEEEEECCCCcE-EEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccC
Q 002446          243 AA-QVHCFDAATLEI-EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS  320 (921)
Q Consensus       243 d~-~I~IwDl~T~~~-l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s  320 (921)
                      ++ .|++||++.+.. .++....              ..+..+   +|=..-           .+|              
T Consensus       160 ~~~~IkLyD~Rs~dkgPF~tf~i--------------~~~~~~---ew~~l~-----------FS~--------------  197 (311)
T KOG1446|consen  160 GSELIKLYDLRSFDKGPFTTFSI--------------TDNDEA---EWTDLE-----------FSP--------------  197 (311)
T ss_pred             CCCeEEEEEecccCCCCceeEcc--------------CCCCcc---ceeeeE-----------EcC--------------
Confidence            55 999999987632 1111100              000000   111100           000              


Q ss_pred             CCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC
Q 002446          321 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK  400 (921)
Q Consensus       321 ~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~  400 (921)
                      +|+.+                                                          .-....+.+.+.|.-+|
T Consensus       198 dGK~i----------------------------------------------------------LlsT~~s~~~~lDAf~G  219 (311)
T KOG1446|consen  198 DGKSI----------------------------------------------------------LLSTNASFIYLLDAFDG  219 (311)
T ss_pred             CCCEE----------------------------------------------------------EEEeCCCcEEEEEccCC
Confidence            12111                                                          11133578999999999


Q ss_pred             ceEEEeccCCCCe---EEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEE
Q 002446          401 NVIAQFRAHKSPI---SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF  477 (921)
Q Consensus       401 ~~l~~~~aH~~pI---saLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaF  477 (921)
                      ..+.+|..|...-   ...+|+|||+++.+++.||+ |+||++.++              .++..+ +|.....+.++-|
T Consensus       220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~-i~vw~~~tg--------------~~v~~~-~~~~~~~~~~~~f  283 (311)
T KOG1446|consen  220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGT-IHVWNLETG--------------KKVAVL-RGPNGGPVSCVRF  283 (311)
T ss_pred             cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCc-EEEEEcCCC--------------cEeeEe-cCCCCCCcccccc
Confidence            9999999886432   45789999999999999998 899999886              444555 4544556899999


Q ss_pred             ccCCCEEEEEeCCCcEEEEecCCC
Q 002446          478 SDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       478 SPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      +|--..+|+++.  .+-+|-....
T Consensus       284 nP~~~mf~sa~s--~l~fw~p~~~  305 (311)
T KOG1446|consen  284 NPRYAMFVSASS--NLVFWLPDED  305 (311)
T ss_pred             CCceeeeeecCc--eEEEEecccc
Confidence            998888887754  5777765543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.34  E-value=7.5e-11  Score=127.35  Aligned_cols=123  Identities=15%  Similarity=0.166  Sum_probs=94.4

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc--c
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG--L  467 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG--~  467 (921)
                      ..+-||.-..+.++..+-+|.+.|+.|+|-+||..|.+++..--.|-.||+...             ...+|.|.|.  .
T Consensus       230 q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~-------------~~pv~~L~rhv~~  296 (406)
T KOG2919|consen  230 QRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS-------------RDPVYALERHVGD  296 (406)
T ss_pred             ceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc-------------cchhhhhhhhccC
Confidence            445666667788999999999999999999999999999887667999999874             3456777653  3


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCce-eecCCCCCcccccCCcCCccccCC
Q 002446          468 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV-NFQPTDANFTTKHGAMAKSGVRWP  529 (921)
Q Consensus       468 t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~-~l~~H~~~~~~~~~~~~~~~~r~~  529 (921)
                      |+.+|+ ....|+|+|||+|+.||.|++||+..++..+ .+..|...++   +.+++++.+..
T Consensus       297 TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vN---gvslnP~mpil  355 (406)
T KOG2919|consen  297 TNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVN---GVSLNPIMPIL  355 (406)
T ss_pred             ccceEE-EecCCCCceeeccCCCccEEEEecCCCCCccccccccccccc---ceecCccccee
Confidence            343444 3447999999999999999999999988855 4466766666   45555554333

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.33  E-value=7.1e-11  Score=132.19  Aligned_cols=227  Identities=20%  Similarity=0.323  Sum_probs=160.5

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCC
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRP  164 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rP  164 (921)
                      .|-.+|+.+....   |+    ++|+.|- ++-|+|||+++. +....+..|.+.|..+.|--.+             ..
T Consensus       200 ~h~keil~~avS~---Dg----kylatgg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~gt-------------~~  258 (479)
T KOG0299|consen  200 GHVKEILTLAVSS---DG----KYLATGGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRKGT-------------SE  258 (479)
T ss_pred             cccceeEEEEEcC---CC----cEEEecCCCceEEEecCccc-chhhcccccccceeeeeeecCc-------------cc
Confidence            6777888888766   66    6777665 666899999994 5566788899999998875321             12


Q ss_pred             EEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEE-eCCCCEEEEEEc--CCEEEE-
Q 002446          165 LLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHML-KFRSPIYSVRCS--SRVVAI-  240 (921)
Q Consensus       165 LLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL-~f~s~V~sV~~S--~riLAV-  240 (921)
                      |.+.+.                                  +.+|++|++..-.++.++ .+.+.|.+|...  .|.+.| 
T Consensus       259 lys~s~----------------------------------Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVG  304 (479)
T KOG0299|consen  259 LYSASA----------------------------------DRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVG  304 (479)
T ss_pred             eeeeec----------------------------------CCceEEEehhHhHHHHHHhCCccceeeechhcccceEEec
Confidence            332222                                  267999999998888876 457899999985  467777 


Q ss_pred             EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccC
Q 002446          241 CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS  320 (921)
Q Consensus       241 a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s  320 (921)
                      .-|.++++|++..-..+ ....+.   ++            +    ..+||-                            
T Consensus       305 grDrT~rlwKi~eesql-ifrg~~---~s------------i----dcv~~I----------------------------  336 (479)
T KOG0299|consen  305 GRDRTVRLWKIPEESQL-IFRGGE---GS------------I----DCVAFI----------------------------  336 (479)
T ss_pred             cccceeEEEecccccee-eeeCCC---CC------------e----eeEEEe----------------------------
Confidence            47899999998432111 000100   00            0    001111                            


Q ss_pred             CCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC
Q 002446          321 NGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK  400 (921)
Q Consensus       321 ~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~  400 (921)
                                             .                                   ..||+++..+|.|.+|++..+
T Consensus       337 -----------------------n-----------------------------------~~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  337 -----------------------N-----------------------------------DEHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             -----------------------c-----------------------------------ccceeeccCCceEEEeeeccc
Confidence                                   0                                   025667788999999999999


Q ss_pred             ceEEEec-cCC-----------CCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          401 NVIAQFR-AHK-----------SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       401 ~~l~~~~-aH~-----------~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      +++.+.+ +|.           .-|++|+.-|...++|++|.+|. +|+|.+.++.          .....++.+.  . 
T Consensus       359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~----------r~i~~l~~ls--~-  424 (479)
T KOG0299|consen  359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGL----------RAINLLYSLS--L-  424 (479)
T ss_pred             CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCc----------cccceeeecc--c-
Confidence            9988876 663           26899999999999999999997 9999999861          1234455553  1 


Q ss_pred             cccEEEEEEccCCCEEEEE
Q 002446          469 NAVIQDISFSDDSNWIMIS  487 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsg  487 (921)
                      ...|++|+|+++|++|.+|
T Consensus       425 ~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  425 VGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ccEEEEEEEccCCCEEEEe
Confidence            2349999999999988777

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.33  E-value=3.1e-10  Score=121.82  Aligned_cols=257  Identities=13%  Similarity=0.171  Sum_probs=169.1

Q ss_pred             CCCCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCCCe-EEeeeeecCCEEEEEEecCCCCCccccCccccC
Q 002446           85 ESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNV-HDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        85 ~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~~~-~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~  162 (921)
                      .+..|.|.-+.|.+   ..   ..+|+.|. ++.+|+|+++..+.. -+....++|||-++.+.-+              
T Consensus        24 ~pP~DsIS~l~FSP---~~---~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd--------------   83 (347)
T KOG0647|consen   24 NPPEDSISALAFSP---QA---DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD--------------   83 (347)
T ss_pred             CCcccchheeEecc---cc---CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC--------------
Confidence            35678999999998   22   14665666 777999999985322 1223356777777776532              


Q ss_pred             CCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEc----CCEE
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS----SRVV  238 (921)
Q Consensus       163 rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S----~riL  238 (921)
                      ...+. .++                                .++.+++|||.+++....--+..+|..++|=    -..|
T Consensus        84 gskVf-~g~--------------------------------~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl  130 (347)
T KOG0647|consen   84 GSKVF-SGG--------------------------------CDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCL  130 (347)
T ss_pred             CceEE-eec--------------------------------cCCceEEEEccCCCeeeeeecccceeEEEEecCCCccee
Confidence            11111 111                                2267999999999887777788999999993    2466


Q ss_pred             EE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccccccccc
Q 002446          239 AI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSG  317 (921)
Q Consensus       239 AV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~  317 (921)
                      +. +-|++|+.||.+....+.++.-       |.               |  .|+                         
T Consensus       131 ~TGSWDKTlKfWD~R~~~pv~t~~L-------Pe---------------R--vYa-------------------------  161 (347)
T KOG0647|consen  131 VTGSWDKTLKFWDTRSSNPVATLQL-------PE---------------R--VYA-------------------------  161 (347)
T ss_pred             EecccccceeecccCCCCeeeeeec-------cc---------------e--eee-------------------------
Confidence            76 7899999999998777776642       10               0  011                         


Q ss_pred             ccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEEC
Q 002446          318 FASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDI  397 (921)
Q Consensus       318 ~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl  397 (921)
                                  .+.-+.++                                              +-+..+..|.+|.+
T Consensus       162 ------------~Dv~~pm~----------------------------------------------vVata~r~i~vynL  183 (347)
T KOG0647|consen  162 ------------ADVLYPMA----------------------------------------------VVATAERHIAVYNL  183 (347)
T ss_pred             ------------hhccCcee----------------------------------------------EEEecCCcEEEEEc
Confidence                        00000000                                              00112345778888


Q ss_pred             CCCceEEEeccCCC----CeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc----c-
Q 002446          398 VSKNVIAQFRAHKS----PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL----T-  468 (921)
Q Consensus       398 ~s~~~l~~~~aH~~----pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~----t-  468 (921)
                      +++.  ..++.|.+    -+.||+.-+|....|.||.+|+ +-|..+..+..          ...-.++.+|..    . 
T Consensus       184 ~n~~--te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~----------~~nFtFkCHR~~~~~~~~  250 (347)
T KOG0647|consen  184 ENPP--TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNP----------KDNFTFKCHRSTNSVNDD  250 (347)
T ss_pred             CCCc--chhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCc----------cCceeEEEeccCCCCCCc
Confidence            7653  34555544    4778888888888899999998 78988887411          112345556621    1 


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCc
Q 002446          469 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF  514 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~  514 (921)
                      -..|++|+|.|.-..|++++.|||.-.||-.....+.+...|...+
T Consensus       251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpI  296 (347)
T KOG0647|consen  251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPI  296 (347)
T ss_pred             eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCcc
Confidence            1238899999999999999999999999987766666666664433

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.30  E-value=2.6e-11  Score=134.02  Aligned_cols=240  Identities=13%  Similarity=0.217  Sum_probs=149.6

Q ss_pred             CCCCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeee-eecCCEEEEEEecCCCCCccccCcccc
Q 002446           83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVS-RYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS-~~dG~Vr~v~~lP~P~~~~~~~d~F~~  161 (921)
                      ...+|...|.++.|.+   |+   |.+|+.|.+.-+.+||+.+ |+.+..+. .+.-.|.++...|+         .|+ 
T Consensus       264 tlvgh~~~V~yi~wSP---Dd---ryLlaCg~~e~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pD---------g~~-  326 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWSP---DD---RYLLACGFDEVLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPD---------GFR-  326 (519)
T ss_pred             eeecccCceEEEEECC---CC---CeEEecCchHheeeccCCc-chhhhhcccCcCCCcceeEEccC---------Cce-
Confidence            4458899999999998   65   5777788888899999998 56655554 33556788888874         221 


Q ss_pred             CCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC--CCCEEEEEEc--C-C
Q 002446          162 VRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF--RSPIYSVRCS--S-R  236 (921)
Q Consensus       162 ~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f--~s~V~sV~~S--~-r  236 (921)
                            ++.++        +|                       +++..||+.. +.+...+.  .-.|++++++  + .
T Consensus       327 ------~V~Gs--------~d-----------------------r~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  327 ------FVTGS--------PD-----------------------RTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             ------eEecC--------CC-----------------------CcEEEecCCc-chhhcccccccceeEEEEEcCCCcE
Confidence                  23332        12                       6788999864 43444443  2468999986  3 5


Q ss_pred             EEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecC--ceEE--ecCCCceecCCCccCCcccccc
Q 002446          237 VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLA--YSGSPVVVSNDGRVNPQHLMQS  312 (921)
Q Consensus       237 iLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgp--RwLA--yas~~~~~s~~GrvsPq~l~~s  312 (921)
                      +++|..+..|++|+..+..+...+..+..             .-.+.++.  ++.-  .....+..|..           
T Consensus       369 vl~v~~d~~i~l~~~e~~~dr~lise~~~-------------its~~iS~d~k~~LvnL~~qei~LWDl-----------  424 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARVDRGLISEEQP-------------ITSFSISKDGKLALVNLQDQEIHLWDL-----------  424 (519)
T ss_pred             EEEEecccceeeechhhhhhhccccccCc-------------eeEEEEcCCCcEEEEEcccCeeEEeec-----------
Confidence            66778999999999988765433333211             01122211  1111  11111112210           


Q ss_pred             cccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEE
Q 002446          313 RSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMV  392 (921)
Q Consensus       313 ~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V  392 (921)
                                        +.-|. .  .++.|..    ...|.          +  .+++.   |.-..-++++..|++|
T Consensus       425 ------------------~e~~l-v--~kY~Ghk----q~~fi----------I--rSCFg---g~~~~fiaSGSED~kv  464 (519)
T KOG0293|consen  425 ------------------EENKL-V--RKYFGHK----QGHFI----------I--RSCFG---GGNDKFIASGSEDSKV  464 (519)
T ss_pred             ------------------chhhH-H--HHhhccc----ccceE----------E--EeccC---CCCcceEEecCCCceE
Confidence                              00000 0  0111211    11111          0  11110   0001234578899999


Q ss_pred             EEEECCCCceEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEeCCC
Q 002446          393 IVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIP  442 (921)
Q Consensus       393 ~IwDl~s~~~l~~~~aH~~pIsaLaFSP-dGtlLATaS~DGt~IrIWdi~~  442 (921)
                      +||+..++++++.+.+|...|.|++++| |-.+||+||+||| ||||-..+
T Consensus       465 yIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt-IRIWg~~~  514 (519)
T KOG0293|consen  465 YIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT-IRIWGPSD  514 (519)
T ss_pred             EEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe-EEEecCCc
Confidence            9999999999999999999999999999 5679999999998 99997764

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=1.7e-10  Score=124.34  Aligned_cols=257  Identities=17%  Similarity=0.232  Sum_probs=166.6

Q ss_pred             EEEEEEecccCCCCCCCeEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEE
Q 002446           91 VLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFC  169 (921)
Q Consensus        91 V~w~~Fd~~~~d~~~~~~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv  169 (921)
                      -..+.|++   -|    ..|++|+.+| +.|||..+.+ +..+++.|--||.++..+++             -|-||. .
T Consensus        26 a~~~~Fs~---~G----~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~d-------------gr~Llt-s   83 (405)
T KOG1273|consen   26 AECCQFSR---WG----DYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRD-------------GRKLLT-S   83 (405)
T ss_pred             cceEEecc---Cc----ceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCC-------------CCEeee-e
Confidence            56788888   44    5999999887 8999999964 66789999999999999864             133442 2


Q ss_pred             eCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEcC----CEEEEEeCCE
Q 002446          170 ADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSS----RVVAICQAAQ  245 (921)
Q Consensus       170 ~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S~----riLAVa~d~~  245 (921)
                      +.          |                       ..|++||+..|.+++.++|+++|+...+-+    +.||.-.+..
T Consensus        84 S~----------D-----------------------~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s  130 (405)
T KOG1273|consen   84 SR----------D-----------------------WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES  130 (405)
T ss_pred             cC----------C-----------------------ceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC
Confidence            11          2                       569999999999999999999999999953    2333333333


Q ss_pred             EEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcce
Q 002446          246 VHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRV  325 (921)
Q Consensus       246 I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~V  325 (921)
                      -.+-++...  ++++.                            +-.+.            ..++.++      +.|   
T Consensus       131 p~vi~~s~~--~h~~L----------------------------p~d~d------------~dln~sa------s~~---  159 (405)
T KOG1273|consen  131 PVVIDFSDP--KHSVL----------------------------PKDDD------------GDLNSSA------SHG---  159 (405)
T ss_pred             cEEEEecCC--ceeec----------------------------cCCCc------------ccccccc------ccc---
Confidence            333333321  12211                            10000            0000000      000   


Q ss_pred             eehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEE
Q 002446          326 AHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQ  405 (921)
Q Consensus       326 a~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~  405 (921)
                                           .|.+                       +     ..++.++...|++.|||..+.++++.
T Consensus       160 ---------------------~fdr-----------------------~-----g~yIitGtsKGkllv~~a~t~e~vas  190 (405)
T KOG1273|consen  160 ---------------------VFDR-----------------------R-----GKYIITGTSKGKLLVYDAETLECVAS  190 (405)
T ss_pred             ---------------------cccC-----------------------C-----CCEEEEecCcceEEEEecchheeeee
Confidence                                 0000                       0     01234556679999999999999999


Q ss_pred             eccCC-CCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCC-CCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCE
Q 002446          406 FRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGI-LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW  483 (921)
Q Consensus       406 ~~aH~-~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~-~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~  483 (921)
                      |+--+ ..|..+-|+..|+.|++-..|. +||+|++..-- .+.  .    ......+++.--.....-.+++||.||.|
T Consensus       191 ~rits~~~IK~I~~s~~g~~liiNtsDR-vIR~ye~~di~~~~r--~----~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY  263 (405)
T KOG1273|consen  191 FRITSVQAIKQIIVSRKGRFLIINTSDR-VIRTYEISDIDDEGR--D----GEVEPEHKLQDVVNKLQWKKCCFSGDGEY  263 (405)
T ss_pred             eeechheeeeEEEEeccCcEEEEecCCc-eEEEEehhhhcccCc--c----CCcChhHHHHHHHhhhhhhheeecCCccE
Confidence            99776 8999999999999999999995 69999987420 111  0    11222233322222233678999999999


Q ss_pred             EEEEeCC-CcEEEEecCCCCCceeecC
Q 002446          484 IMISSSR-GTSHLFAINPLGGSVNFQP  509 (921)
Q Consensus       484 LAsgS~D-gTVhVWdi~~~g~~~~l~~  509 (921)
                      ++.+|.+ ..++||.-..+.-...+.|
T Consensus       264 v~a~s~~aHaLYIWE~~~GsLVKILhG  290 (405)
T KOG1273|consen  264 VCAGSARAHALYIWEKSIGSLVKILHG  290 (405)
T ss_pred             EEeccccceeEEEEecCCcceeeeecC
Confidence            9887754 4689999876544444444

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.29  E-value=1.7e-10  Score=133.71  Aligned_cols=311  Identities=18%  Similarity=0.205  Sum_probs=179.5

Q ss_pred             CeEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEE-ecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 002446          107 RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQM-LPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL  184 (921)
Q Consensus       107 ~~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~-lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~  184 (921)
                      .+++++|+..| +|+|+-++..-+..+-..|--.+-.... .|+|+.+......|.+   .+|+.++.+.       |..
T Consensus       270 ~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD---~IA~~Fdet~-------~kl  339 (1080)
T KOG1408|consen  270 SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPD---AIACQFDETT-------DKL  339 (1080)
T ss_pred             cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCc---eeEEEecCCC-------ceE
Confidence            36778888766 6999998864333322223222222222 3666666555556643   5788887431       211


Q ss_pred             ccccCCCCCCcCCCCCCCCCCcEEEEEECCCC----cEEEEEeCCCCEEEEEE---c----------C-CEEEEEeCCEE
Q 002446          185 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ----SYVHMLKFRSPIYSVRC---S----------S-RVVAICQAAQV  246 (921)
Q Consensus       185 ~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg----~~V~tL~f~s~V~sV~~---S----------~-riLAVa~d~~I  246 (921)
                                     ...|.++.+.+||++.-    ++-..|-+.+.|++|+.   +          + -++..+.|++|
T Consensus       340 ---------------scVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI  404 (1080)
T KOG1408|consen  340 ---------------SCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI  404 (1080)
T ss_pred             ---------------EEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence                           12345588999999764    44455666778888876   1          1 24445789999


Q ss_pred             EEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCccee
Q 002446          247 HCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVA  326 (921)
Q Consensus       247 ~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va  326 (921)
                      ++||+.....-.++......            -+.     --+.|.+....     .+   +....+.       +    
T Consensus       405 RlW~l~~ctnn~vyrRNils------------~~l-----~ki~y~d~~~q-----~~---~d~~~~~-------f----  448 (1080)
T KOG1408|consen  405 RLWDLAFCTNNQVYRRNILS------------ANL-----SKIPYEDSTQQ-----IM---HDASAGI-------F----  448 (1080)
T ss_pred             EEeecccccccceeecccch------------hhh-----hcCccccCchh-----hh---hhccCCc-------c----
Confidence            99999864333332221100            000     01223322110     00   0000000       0    


Q ss_pred             ehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEe
Q 002446          327 HYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF  406 (921)
Q Consensus       327 ~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~  406 (921)
                            .|.+++-  .-+..|+..+                ..+|.       ..|+++++.-|.++|||+...+....+
T Consensus       449 ------dka~~s~--~d~r~G~R~~----------------~vSp~-------gqhLAsGDr~GnlrVy~Lq~l~~~~~~  497 (1080)
T KOG1408|consen  449 ------DKALVST--CDSRFGFRAL----------------AVSPD-------GQHLASGDRGGNLRVYDLQELEYTCFM  497 (1080)
T ss_pred             ------cccchhh--cCcccceEEE----------------EECCC-------cceecccCccCceEEEEehhhhhhhhe
Confidence                  0111100  0011111110                01111       137788888999999999999999999


Q ss_pred             ccCCCCeEEEEECC---CCCEEEEEecCCCEEEEEeCCCCCC------CCCCc-----c-CCCCcee--------E----
Q 002446          407 RAHKSPISALCFDP---SGILLVTASVQGHNINIFKIIPGIL------GTSSA-----C-DAGTSYV--------H----  459 (921)
Q Consensus       407 ~aH~~pIsaLaFSP---dGtlLATaS~DGt~IrIWdi~~g~~------~~~s~-----~-~~~~~~~--------~----  459 (921)
                      .+|.+.|.||.||.   .-++||+||.| +.|+|||+.....      +.+++     + ......+        .    
T Consensus       498 eAHesEilcLeyS~p~~~~kLLASasrd-RlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr  576 (1080)
T KOG1408|consen  498 EAHESEILCLEYSFPVLTNKLLASASRD-RLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFR  576 (1080)
T ss_pred             ecccceeEEEeecCchhhhHhhhhccCC-ceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhee
Confidence            99999999999997   36799999998 5799999986521      21111     0 0000000        0    


Q ss_pred             -------EEEEeccccc---ccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 002446          460 -------LYRLQRGLTN---AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT  510 (921)
Q Consensus       460 -------l~~l~RG~t~---a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H  510 (921)
                             ...+.|+++.   ..+++++..|..++++++..|..|+||++..++....|++-
T Consensus       577 ~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs  637 (1080)
T KOG1408|consen  577 VNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS  637 (1080)
T ss_pred             hhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc
Confidence                   0012233221   23999999999999999999999999999998888888553

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=1.2e-10  Score=122.04  Aligned_cols=265  Identities=17%  Similarity=0.214  Sum_probs=174.8

Q ss_pred             CCCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCC--CeEEeeeeecCCEEEEEEecCCCCCccccCcccc
Q 002446           84 DESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEAD--NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        84 ~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~--~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~  161 (921)
                      ++.|+|.|.-+-.|-   -|   .++...+.+..++||.+.+.+  .....+..|.|||.-+.+.. |.+          
T Consensus         7 dt~H~D~IHda~lDy---yg---krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wah-Pk~----------   69 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDY---YG---KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAH-PKF----------   69 (299)
T ss_pred             hhhhhhhhhHhhhhh---hc---ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecc-ccc----------
Confidence            467888888777666   44   356666667779999999876  34455678999999988863 322          


Q ss_pred             CCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC---CCCEEEEEEc----
Q 002446          162 VRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF---RSPIYSVRCS----  234 (921)
Q Consensus       162 ~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f---~s~V~sV~~S----  234 (921)
                       ..+||.|.-                                 +++|.||.-.+|+--+...|   .+.|.+|++-    
T Consensus        70 -G~iLAScsY---------------------------------DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey  115 (299)
T KOG1332|consen   70 -GTILASCSY---------------------------------DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY  115 (299)
T ss_pred             -CcEeeEeec---------------------------------CceEEEEecCCCchhhhhhhhhhcccceeeccccccc
Confidence             367887763                                 26799999999865554444   6789999995    


Q ss_pred             CCEEEE-EeCCEEEEEECCCC-cE-EEEE-ecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccc
Q 002446          235 SRVVAI-CQAAQVHCFDAATL-EI-EYAI-LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLM  310 (921)
Q Consensus       235 ~riLAV-a~d~~I~IwDl~T~-~~-l~tL-~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~  310 (921)
                      +-+||. +.|++|.|++..+- .- ...+ ..|+            ++++.++       .+             |... 
T Consensus       116 gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~------------~GvnsVs-------wa-------------pa~~-  162 (299)
T KOG1332|consen  116 GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE------------IGVNSVS-------WA-------------PASA-  162 (299)
T ss_pred             ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc------------cccceee-------ec-------------CcCC-
Confidence            356666 78999999987753 21 1111 1121            2333332       11             1100 


Q ss_pred             cccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCC
Q 002446          311 QSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVG  390 (921)
Q Consensus       311 ~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G  390 (921)
                                .|+++-+       ..++                                   +     ...+++++.|.
T Consensus       163 ----------~g~~~~~-------~~~~-----------------------------------~-----~krlvSgGcDn  185 (299)
T KOG1332|consen  163 ----------PGSLVDQ-------GPAA-----------------------------------K-----VKRLVSGGCDN  185 (299)
T ss_pred             ----------Ccccccc-------Cccc-----------------------------------c-----cceeeccCCcc
Confidence                      0111100       0000                                   0     01245677889


Q ss_pred             EEEEEECCCCc--eEEEeccCCCCeEEEEECCCC----CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 002446          391 MVIVRDIVSKN--VIAQFRAHKSPISALCFDPSG----ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ  464 (921)
Q Consensus       391 ~V~IwDl~s~~--~l~~~~aH~~pIsaLaFSPdG----tlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~  464 (921)
                      .|+||+..+++  .-.+|++|+.-|..+++.|.-    .+||+||.||+ +.||..... ..     .+  ....+.+  
T Consensus       186 ~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viIwt~~~e-~e-----~w--k~tll~~--  254 (299)
T KOG1332|consen  186 LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VIIWTKDEE-YE-----PW--KKTLLEE--  254 (299)
T ss_pred             ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEEEEecCc-cC-----cc--ccccccc--
Confidence            99999998863  445699999999999999974    47999999998 789987632 10     01  0111222  


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 002446          465 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG  503 (921)
Q Consensus       465 RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~  503 (921)
                        +. ..++.++||+.|..||++..|+.|.+|.=+-.|+
T Consensus       255 --f~-~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk  290 (299)
T KOG1332|consen  255 --FP-DVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK  290 (299)
T ss_pred             --CC-cceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence              22 2499999999999999999999999998765544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.28  E-value=7.9e-09  Score=116.93  Aligned_cols=312  Identities=14%  Similarity=0.223  Sum_probs=178.7

Q ss_pred             CCcEEEEEEecccCCCCCCCeEEEEEccC--cEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           88 HDQVLWAGFDKLESEAGATRRVLLLGYRS--GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        88 kd~V~w~~Fd~~~~d~~~~~~vLllG~~~--GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      .-.|..+.|.++....    .++++-+.+  =+-|||-.-....-+ ++--+..|..+++.|.             .++|
T Consensus       154 ~~GV~~vaFsk~~~G~----~l~~vD~s~~h~lSVWdWqk~~~~~~-vk~sne~v~~a~FHPt-------------d~nl  215 (626)
T KOG2106|consen  154 DRGVTCVAFSKINGGS----LLCAVDDSNPHMLSVWDWQKKAKLGP-VKTSNEVVFLATFHPT-------------DPNL  215 (626)
T ss_pred             cccceeeeecccCCCc----eEEEecCCCccccchhhchhhhccCc-ceeccceEEEEEeccC-------------CCcE
Confidence            3458888998854332    455555544  368999976322222 2334556777888874             2466


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-C----CCCEEEEEEc--CCEE
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-F----RSPIYSVRCS--SRVV  238 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f----~s~V~sV~~S--~riL  238 (921)
                      +..|+.                                  +.+.||+++++.+++... |    +..|.+|.|.  +++|
T Consensus       216 iit~Gk----------------------------------~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi  261 (626)
T KOG2106|consen  216 IITCGK----------------------------------GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI  261 (626)
T ss_pred             EEEeCC----------------------------------ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE
Confidence            666653                                  458999999998887653 2    3579999994  6777


Q ss_pred             EEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecC-ceEEecCCC--ceecCCCc--cCCccccccc
Q 002446          239 AICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP-RWLAYSGSP--VVVSNDGR--VNPQHLMQSR  313 (921)
Q Consensus       239 AVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgp-RwLAyas~~--~~~s~~Gr--vsPq~l~~s~  313 (921)
                      ..-.++.|.||+..+.+..++...|+.-          + +.-+.+.. ..|. .+++  +..|...-  +.+-.++.  
T Consensus       262 TgDS~G~i~Iw~~~~~~~~k~~~aH~gg----------v-~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe--  327 (626)
T KOG2106|consen  262 TGDSGGNILIWSKGTNRISKQVHAHDGG----------V-FSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPE--  327 (626)
T ss_pred             eecCCceEEEEeCCCceEEeEeeecCCc----------e-EEEEEecCccEee-cCccceEEeccccccccccccCch--
Confidence            7778899999999988877777666421          0 00111111 2222 2222  22332100  00000100  


Q ss_pred             ccccccCCCcceeehhhhcchhhcceeEecCCcccccccccccc-c--cCCCcCCcc--c-ccCCCCCCCcccCcccccC
Q 002446          314 SFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE-F--LPDSQNSLQ--S-AIPGGKSNGTVNGHFPDAD  387 (921)
Q Consensus       314 ~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~-~--~p~~~~si~--s-a~~~~k~~g~v~g~~~s~~  387 (921)
                            ..|. +..+|..-+     + ..+|-..-.-|...+.. +  +-.+++.-.  . ..|+       ...+++++
T Consensus       328 ------~~G~-iRtv~e~~~-----d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps-------~~q~~T~g  387 (626)
T KOG2106|consen  328 ------QFGP-IRTVAEGKG-----D-ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS-------KNQLLTCG  387 (626)
T ss_pred             ------hcCC-eeEEecCCC-----c-EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC-------hhheeecc
Confidence                  0010 000010000     0 11221110000000000 0  000000000  0 0111       12456788


Q ss_pred             CCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          388 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      .++.|++|+  ..+++.+.. -..|+.|+.|+|.| .||.+...|+ --|.|+.+.               .+.+++.- 
T Consensus       388 qdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~~---------------~lv~~~~d-  446 (626)
T KOG2106|consen  388 QDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGR-WFVLDTETQ---------------DLVTIHTD-  446 (626)
T ss_pred             CcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccce-EEEEecccc---------------eeEEEEec-
Confidence            999999999  444544332 34689999999999 8999999998 568888763               34455433 


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          468 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       468 t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                       ++.+..++|||||.+||+||.|+.|.||.++..|.....
T Consensus       447 -~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r  485 (626)
T KOG2106|consen  447 -NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR  485 (626)
T ss_pred             -CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence             567999999999999999999999999999988776544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.26  E-value=2.5e-10  Score=122.10  Aligned_cols=111  Identities=16%  Similarity=0.246  Sum_probs=83.3

Q ss_pred             CCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-c
Q 002446          388 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-R  465 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGt-lLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~-R  465 (921)
                      .+-.|++-|+.+|..-+++.+|...|.++.|+|... .|||||.||+ ||+||+... .++...-+.... +..-.++ +
T Consensus       166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra-sgcf~~lD~hn~-k~~p~~~~n  242 (397)
T KOG4283|consen  166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA-SGCFRVLDQHNT-KRPPILKTN  242 (397)
T ss_pred             CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecc-cceeEEeecccC-ccCcccccc
Confidence            345799999999999999999999999999999876 5899999998 999999864 111100000000 0000111 2


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          466 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       466 G~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      -.+..+|..+||+.|+.++++.+.|..+++|....+
T Consensus       243 ~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  243 TAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             ccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence            334456999999999999999999999999998775

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.25  E-value=9.7e-11  Score=126.25  Aligned_cols=132  Identities=15%  Similarity=0.268  Sum_probs=87.3

Q ss_pred             cccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCC-----C--C--ccC
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT-----S--S--ACD  452 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~-----~--s--~~~  452 (921)
                      ++.++..||.|.+||...-.++.+|++|++.|+.|+..|+|++-.+-+.|+. +|.|++..+..+-     .  .  ...
T Consensus        99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~-lr~WNLV~Gr~a~v~~L~~~at~v~w~  177 (362)
T KOG0294|consen   99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV-LRTWNLVRGRVAFVLNLKNKATLVSWS  177 (362)
T ss_pred             heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce-eeeehhhcCccceeeccCCcceeeEEc
Confidence            4556778999999999999999999999999999999999999999999986 9999999872100     0  0  000


Q ss_pred             CCCc--------eeEEEEEe------cccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          453 AGTS--------YVHLYRLQ------RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       453 ~~~~--------~~~l~~l~------RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      +.+.        ...+|.+.      +-....+|.++.|- ++..|++|.++++|.+||-+.......+.+|...+.
T Consensus       178 ~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK  253 (362)
T KOG0294|consen  178 PQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVK  253 (362)
T ss_pred             CCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhhee
Confidence            0000        01112110      00011223444442 555677777778888887777555666677755554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.25  E-value=3.6e-10  Score=131.40  Aligned_cols=214  Identities=14%  Similarity=0.219  Sum_probs=155.9

Q ss_pred             eEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccc
Q 002446          108 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA  187 (921)
Q Consensus       108 ~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~  187 (921)
                      +++..|-+..+-||..... +-.-++.+|...|.++.....               +.  +++++|              
T Consensus        73 ~l~~g~~D~~i~v~~~~~~-~P~~~LkgH~snVC~ls~~~~---------------~~--~iSgSW--------------  120 (745)
T KOG0301|consen   73 RLVVGGMDTTIIVFKLSQA-EPLYTLKGHKSNVCSLSIGED---------------GT--LISGSW--------------  120 (745)
T ss_pred             ceEeecccceEEEEecCCC-CchhhhhccccceeeeecCCc---------------Cc--eEeccc--------------
Confidence            4444444555679998773 455678889999999875432               12  345555              


Q ss_pred             cCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCcEEEEEecCC
Q 002446          188 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNP  264 (921)
Q Consensus       188 ~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAVa~d~~I~IwDl~T~~~l~tL~t~p  264 (921)
                                       ++|+++|-.  ++++.+++ +...|++|..-  ..+|..+.|++|++|..  +++++++.+|.
T Consensus       121 -----------------D~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHt  179 (745)
T KOG0301|consen  121 -----------------DSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHT  179 (745)
T ss_pred             -----------------ccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccch
Confidence                             388999975  56666665 57899999883  35556689999999997  45566776663


Q ss_pred             CccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecC
Q 002446          265 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG  344 (921)
Q Consensus       265 ~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lG  344 (921)
                      ++               +    |-||.-+                                                   
T Consensus       180 D~---------------V----RgL~vl~---------------------------------------------------  189 (745)
T KOG0301|consen  180 DC---------------V----RGLAVLD---------------------------------------------------  189 (745)
T ss_pred             hh---------------e----eeeEEec---------------------------------------------------
Confidence            31               1    2233210                                                   


Q ss_pred             CccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCE
Q 002446          345 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGIL  424 (921)
Q Consensus       345 d~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtl  424 (921)
                                                         ..+|+++++||.|+.||+ ++.++..+.+|++-|.+++..+++.+
T Consensus       190 -----------------------------------~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~  233 (745)
T KOG0301|consen  190 -----------------------------------DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL  233 (745)
T ss_pred             -----------------------------------CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence                                               013556788999999999 78889999999999999999999999


Q ss_pred             EEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          425 LVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       425 LATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                      ++|+++|+| +|||+...              +....++.    .-.|+++++=++|. |++|++||-|+||...+
T Consensus       234 Ivs~gEDrt-lriW~~~e--------------~~q~I~lP----ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  234 IVSTGEDRT-LRIWKKDE--------------CVQVITLP----TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEEecCCce-EEEeecCc--------------eEEEEecC----ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            999999998 89998763              23333431    12499999988887 56888899999998875

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.25  E-value=3.8e-10  Score=127.03  Aligned_cols=276  Identities=16%  Similarity=0.241  Sum_probs=170.3

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEE---e-eeeecCCEEEEEEecCCCCCccccCccccC
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHD---L-VSRYDGPVSFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~e---l-vS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~  162 (921)
                      |.|-|.-+.+..   .   .+.|+. |..++++|||+...++-.-   + +-.++.-+|.++++|+             .
T Consensus       418 HGEvVcAvtIS~---~---trhVyT-gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd-------------g  477 (705)
T KOG0639|consen  418 HGEVVCAVTISN---P---TRHVYT-GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD-------------G  477 (705)
T ss_pred             cCcEEEEEEecC---C---cceeEe-cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCC-------------C
Confidence            445455555433   2   245554 5588999999987543211   1 1135666888888874             2


Q ss_pred             CCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCC---CEEEEEEcC--CE
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS---PIYSVRCSS--RV  237 (921)
Q Consensus       163 rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s---~V~sV~~S~--ri  237 (921)
                      |.||  +++.                                -.+|.||||.+....-..+..+   ..|++++|+  ++
T Consensus       478 rtLi--vGGe--------------------------------astlsiWDLAapTprikaeltssapaCyALa~spDakv  523 (705)
T KOG0639|consen  478 RTLI--VGGE--------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKV  523 (705)
T ss_pred             ceEE--eccc--------------------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccce
Confidence            4444  3321                                1579999998876554445543   578888884  44


Q ss_pred             -EEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccc
Q 002446          238 -VAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFS  316 (921)
Q Consensus       238 -LAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~  316 (921)
                       ++.+.++.|.|||+.+....+++.+|++-.            ..|.       .+.+-..+|..|.             
T Consensus       524 cFsccsdGnI~vwDLhnq~~VrqfqGhtDGa------------scId-------is~dGtklWTGGl-------------  571 (705)
T KOG0639|consen  524 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA------------SCID-------ISKDGTKLWTGGL-------------  571 (705)
T ss_pred             eeeeccCCcEEEEEcccceeeecccCCCCCc------------eeEE-------ecCCCceeecCCC-------------
Confidence             344789999999999999899998886411            1122       2222233443331             


Q ss_pred             cccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEE
Q 002446          317 GFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRD  396 (921)
Q Consensus       317 ~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwD  396 (921)
                           ..+|..|.....+++..          +.++....++         .-||...       -++-+...+.|.|..
T Consensus       572 -----DntvRcWDlregrqlqq----------hdF~SQIfSL---------g~cP~~d-------WlavGMens~vevlh  620 (705)
T KOG0639|consen  572 -----DNTVRCWDLREGRQLQQ----------HDFSSQIFSL---------GYCPTGD-------WLAVGMENSNVEVLH  620 (705)
T ss_pred             -----ccceeehhhhhhhhhhh----------hhhhhhheec---------ccCCCcc-------ceeeecccCcEEEEe
Confidence                 23455555444444432          0111111110         0011000       012234456666665


Q ss_pred             CCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEE
Q 002446          397 IVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS  476 (921)
Q Consensus       397 l~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIa  476 (921)
                      .. +.....+.-|.+-|.+|+|.+-|+++++.+.|. .++.|...-+              ..++....   ...|.++.
T Consensus       621 ~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDn-lLnawrtPyG--------------asiFqskE---~SsVlsCD  681 (705)
T KOG0639|consen  621 TS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNAWRTPYG--------------ASIFQSKE---SSSVLSCD  681 (705)
T ss_pred             cC-CccceeecccccEEEEEEecccCceeeecCchh-hhhhccCccc--------------cceeeccc---cCcceeee
Confidence            43 334567778999999999999999999999995 5899987765              23444432   24599999


Q ss_pred             EccCCCEEEEEeCCCcEEEEec
Q 002446          477 FSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       477 FSPDg~~LAsgS~DgTVhVWdi  498 (921)
                      +|-|.+||++||.|...-||.+
T Consensus       682 IS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  682 ISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eccCceEEEecCCCcceEEEEE
Confidence            9999999999999998888875

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=1.3e-09  Score=117.59  Aligned_cols=252  Identities=13%  Similarity=0.151  Sum_probs=160.2

Q ss_pred             CCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCC
Q 002446           85 ESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRP  164 (921)
Q Consensus        85 ~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rP  164 (921)
                      .+.+|.|.-++|+.   ..   ..+|+..-++.+++||++.. ..+ +.-.+.+|+-.+++.+.                
T Consensus        10 npP~d~IS~v~f~~---~~---~~LLvssWDgslrlYdv~~~-~l~-~~~~~~~plL~c~F~d~----------------   65 (323)
T KOG1036|consen   10 NPPEDGISSVKFSP---SS---SDLLVSSWDGSLRLYDVPAN-SLK-LKFKHGAPLLDCAFADE----------------   65 (323)
T ss_pred             CCChhceeeEEEcC---cC---CcEEEEeccCcEEEEeccch-hhh-hheecCCceeeeeccCC----------------
Confidence            45699999999995   33   14555555667999999873 222 22235566655555431                


Q ss_pred             EEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEc---CCEEEEE
Q 002446          165 LLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAIC  241 (921)
Q Consensus       165 LLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S---~riLAVa  241 (921)
                      .=+++++                                .++.||.+|+.+++......+..+|..|..+   +.+|+.+
T Consensus        66 ~~~~~G~--------------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgs  113 (323)
T KOG1036|consen   66 STIVTGG--------------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGS  113 (323)
T ss_pred             ceEEEec--------------------------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcc
Confidence            0011111                                2378999999999988888889999999997   4566678


Q ss_pred             eCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCC
Q 002446          242 QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN  321 (921)
Q Consensus       242 ~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~  321 (921)
                      .|++|++||.++.....++..-                +.+        |+                             
T Consensus       114 WD~~ik~wD~R~~~~~~~~d~~----------------kkV--------y~-----------------------------  140 (323)
T KOG1036|consen  114 WDKTIKFWDPRNKVVVGTFDQG----------------KKV--------YC-----------------------------  140 (323)
T ss_pred             cCccEEEEeccccccccccccC----------------ceE--------EE-----------------------------
Confidence            9999999999873222222110                000        11                             


Q ss_pred             CcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCc
Q 002446          322 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN  401 (921)
Q Consensus       322 g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~  401 (921)
                              ++..          |+                                    .++-+..+-.|.+||+.+..
T Consensus       141 --------~~v~----------g~------------------------------------~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen  141 --------MDVS----------GN------------------------------------RLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             --------Eecc----------CC------------------------------------EEEEeecCceEEEEEccccc
Confidence                    0000          00                                    01112345679999999876


Q ss_pred             eEEEecc--CCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccccc-----ccEEE
Q 002446          402 VIAQFRA--HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN-----AVIQD  474 (921)
Q Consensus       402 ~l~~~~a--H~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~-----a~I~s  474 (921)
                      ...+.+.  -+-.+.||++-|++.=.|.+|.||+ |-+=.+++... .       .+..-.++.||-...     ..|.+
T Consensus       167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~-~-------~skkyaFkCHr~~~~~~~~~yPVNa  237 (323)
T KOG1036|consen  167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEE-A-------QSKKYAFKCHRLSEKDTEIIYPVNA  237 (323)
T ss_pred             chhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchH-H-------hhhceeEEeeecccCCceEEEEece
Confidence            5444332  2347899999999999999999998 55544443200 0       011222333332111     23899


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 002446          475 ISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ  508 (921)
Q Consensus       475 IaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~  508 (921)
                      |+|+|--+.||+|+.||-|-+||+.+.+....+.
T Consensus       238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~  271 (323)
T KOG1036|consen  238 IAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA  271 (323)
T ss_pred             eEeccccceEEecCCCceEEEccCcchhhhhhcc
Confidence            9999999999999999999999998876655553

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.24  E-value=7.8e-11  Score=139.53  Aligned_cols=111  Identities=16%  Similarity=0.302  Sum_probs=91.4

Q ss_pred             CcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 002446          381 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH  459 (921)
Q Consensus       381 g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSP-dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~  459 (921)
                      +.+++..-|.+|++|++....+++.|. |..-|+|++|+| |.+++++||-||+ +|||+|...            .+..
T Consensus       381 ~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~------------~Vv~  446 (712)
T KOG0283|consen  381 NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDK------------KVVD  446 (712)
T ss_pred             CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc-eEEeecCcC------------eeEe
Confidence            345677789999999999999999995 999999999999 8999999999997 999999874            2333


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 002446          460 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT  510 (921)
Q Consensus       460 l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H  510 (921)
                      -+.++     .-|+.+||+|||++.++|+.+|.+++|+.....-...++.|
T Consensus       447 W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~  492 (712)
T KOG0283|consen  447 WNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR  492 (712)
T ss_pred             ehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence            23332     23999999999999999999999999998765544444443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.24  E-value=6.3e-11  Score=133.20  Aligned_cols=109  Identities=17%  Similarity=0.295  Sum_probs=86.3

Q ss_pred             CCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCC-------------CCCCccCC
Q 002446          387 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-------------GTSSACDA  453 (921)
Q Consensus       387 ~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~-------------~~~s~~~~  453 (921)
                      ..+|.|.|||+.+...+.+|++|+..+.||..++||+.|=|++-|.+ +|-||+.++..             +..+..+|
T Consensus       528 csdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt-vRcWDlregrqlqqhdF~SQIfSLg~cP~~dW  606 (705)
T KOG0639|consen  528 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT-VRCWDLREGRQLQQHDFSSQIFSLGYCPTGDW  606 (705)
T ss_pred             ccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc-eeehhhhhhhhhhhhhhhhhheecccCCCccc
Confidence            45789999999999999999999999999999999999999999987 89999998621             11122222


Q ss_pred             C------Ccee-------EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 002446          454 G------TSYV-------HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       454 ~------~~~~-------~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi  498 (921)
                      .      +.++       +.|.|  +.+...|.++.|++.|+|+++.+.|+-+-.|..
T Consensus       607 lavGMens~vevlh~skp~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  607 LAVGMENSNVEVLHTSKPEKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  662 (705)
T ss_pred             eeeecccCcEEEEecCCccceee--cccccEEEEEEecccCceeeecCchhhhhhccC
Confidence            1      1111       12333  334456999999999999999999999999987

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=9.9e-12  Score=143.65  Aligned_cols=321  Identities=24%  Similarity=0.349  Sum_probs=189.5

Q ss_pred             CeEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 002446          107 RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA  185 (921)
Q Consensus       107 ~~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~  185 (921)
                      .-+++.||=.| .++|-....+.+.+++..+.|+|+...++++-                |.++.+              
T Consensus       252 Gy~~isglc~g~~~~g~gpglgg~~~~~vGrvg~vsaesV~g~~----------------~vivkd--------------  301 (788)
T KOG2109|consen  252 GYVLISGLCRGSYQIGTGPGLGGFEEVLVGRVGPVSAESVLGNN----------------LVIVKD--------------  301 (788)
T ss_pred             hHHHHHHHhhcccCCCCCCCCCCcCceeccccccccceeecccc----------------eEEeec--------------
Confidence            35677788666 78999888888988888999999988877531                122221              


Q ss_pred             cccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECCCCcEEEEEecCCC
Q 002446          186 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPI  265 (921)
Q Consensus       186 ~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S~riLAVa~d~~I~IwDl~T~~~l~tL~t~p~  265 (921)
                                              |-++.+...++.++++..+..++-++-+|+++.-..+.|++++.++..-++.+.. 
T Consensus       302 ------------------------f~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~-  356 (788)
T KOG2109|consen  302 ------------------------FDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSD-  356 (788)
T ss_pred             ------------------------ccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccc-
Confidence                                    2233344445555555554444446666666665556666666665544443321 


Q ss_pred             ccCCCCCCCCCccccceeecCceEEecCCCc---ee---cCCCccCCcccccccccccccCCCcceeehhhhcchhhcce
Q 002446          266 VMGHPSAGGIGIGYGPLAVGPRWLAYSGSPV---VV---SNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG  339 (921)
Q Consensus       266 ~~g~p~~~g~~i~~~piAlgpRwLAyas~~~---~~---s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasG  339 (921)
                        ..       +..++.++.++||+|..-..   ++   +..|.  +..+.+..          .+--||   ++-|-.|
T Consensus       357 --qs-------~~~s~ra~t~aviqdicfs~~s~~r~~gsc~Ge--~P~ls~t~----------~lp~~A---~~Sl~~g  412 (788)
T KOG2109|consen  357 --QS-------LVVSPRANTAAVIQDICFSEVSTIRTAGSCEGE--PPALSLTC----------QLPAYA---DTSLDLG  412 (788)
T ss_pred             --cc-------cccchhcchHHHHHHHhhhhhcceEeecccCCC--Cccccccc----------ccchhh---chhhhcc
Confidence              11       23445666666666543111   00   00111  00011000          000011   1111122


Q ss_pred             eEecCCccccccc----cccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECC-----CC-ceEEEeccC
Q 002446          340 IVNLGDLGYKKLS----QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-----SK-NVIAQFRAH  409 (921)
Q Consensus       340 l~~lGd~g~k~ls----~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~-----s~-~~l~~~~aH  409 (921)
                      +...|......++    .|+....-.++-...+..+..|..|...+..+. ...|.+.+.+..     ++ -.++++-+|
T Consensus       413 l~s~g~~aa~gla~~sag~~a~s~~asSv~s~s~~pd~ks~gv~~gsv~k-~~q~~~~~l~~llv~~psGd~vvqh~vah  491 (788)
T KOG2109|consen  413 LQSSGGLAAEGLATSSAGYTAHSYTASSVFSRSVKPDSKSVGVGSGSVTK-ANQGVITVLNLLLVGEPSGDGVVQHYVAH  491 (788)
T ss_pred             ccccCcccceeeeeccccccccccccceeeccccccchhhccceeeeccc-cCccchhhhhheeeecCCCCceeEEEeec
Confidence            2222222111111    122111000000001112333444443332222 233444444432     23 567888899


Q ss_pred             CCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 002446          410 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS  489 (921)
Q Consensus       410 ~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~  489 (921)
                      ..++..+.|+|+++++.+++..++.+++|.+++...+++     .....|+|+++||.|.++|..++|+-|++|+|....
T Consensus       492 s~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wss-----laav~hly~l~rG~TsaKv~~~afs~dsrw~A~~t~  566 (788)
T KOG2109|consen  492 SDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSS-----LAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLAITTN  566 (788)
T ss_pred             cCccceeeecccccceecccccccccceEEeecccccHH-----HhhhhhhhhccCCCccceeeeeEeecchhhhhhhhc
Confidence            999999999999999999999999889999998744432     224678999999999999999999999999999999


Q ss_pred             CCcEEEEecCCCCCceeecCCCC
Q 002446          490 RGTSHLFAINPLGGSVNFQPTDA  512 (921)
Q Consensus       490 DgTVhVWdi~~~g~~~~l~~H~~  512 (921)
                      .+|.|||.+.+|++....++|++
T Consensus       567 ~~TthVfk~hpYgg~aeqrth~~  589 (788)
T KOG2109|consen  567 HATTHVFKVHPYGGKAEQRTHGD  589 (788)
T ss_pred             CCceeeeeeccccccccceecCC
Confidence            99999999999999999999987

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.23  E-value=1.2e-10  Score=130.83  Aligned_cols=115  Identities=25%  Similarity=0.408  Sum_probs=91.3

Q ss_pred             ccccCCCCEEEEEECCCCceEEEec-cCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL  460 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~-aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l  460 (921)
                      +..+.++|.|.+||+....++.++. +|..|...+||+|. -.+||+.+.|.+ |.+||+...              ...
T Consensus       180 L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~--------------~s~  244 (673)
T KOG4378|consen  180 LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQ--------------AST  244 (673)
T ss_pred             eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccc--------------ccc
Confidence            4456788999999999998887765 99999999999996 568899999976 999999753              111


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCcee-ecCCCCCcc
Q 002446          461 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN-FQPTDANFT  515 (921)
Q Consensus       461 ~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~-l~~H~~~~~  515 (921)
                      ..|-   ..+....++|++||.+|++|+.+|.|.-||+.....++. +..|...+.
T Consensus       245 ~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt  297 (673)
T KOG4378|consen  245 DRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVT  297 (673)
T ss_pred             ceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccccee
Confidence            1221   123578999999999999999999999999998777764 467765544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.23  E-value=3e-10  Score=126.86  Aligned_cols=102  Identities=19%  Similarity=0.222  Sum_probs=78.1

Q ss_pred             cCCCCEEEEEECCCC-ceEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          386 ADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       386 ~~~~G~V~IwDl~s~-~~l~~~~aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      +..+|+|+-+|+++. +++.++++|..+|++|++++. -.+|+|+|.|+. +++|++....+.        ....+..++
T Consensus       348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~--------~v~~~~~~~  418 (463)
T KOG0270|consen  348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPK--------SVKEHSFKL  418 (463)
T ss_pred             ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCc--------ccccccccc
Confidence            356899999999975 899999999999999999996 447999999986 999998764111        112222333


Q ss_pred             ecccccccEEEEEEccCCC-EEEEEeCCCcEEEEecCCCC
Q 002446          464 QRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLG  502 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSPDg~-~LAsgS~DgTVhVWdi~~~g  502 (921)
                      -      +..|.++.|+-- ++|.|+..+.++|||+.+..
T Consensus       419 ~------rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  419 G------RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             c------ceeecccCCCcceEEEecCccceEEEeecccCh
Confidence            2      256788888654 57888889999999998753

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.22  E-value=9.1e-10  Score=117.85  Aligned_cols=135  Identities=18%  Similarity=0.282  Sum_probs=99.5

Q ss_pred             CcEEEEEECCCCcEEEEEeCCCCEEEEEEcC-----CEEEEEe-CCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCcc
Q 002446          205 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCSS-----RVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG  278 (921)
Q Consensus       205 ~~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S~-----riLAVa~-d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~  278 (921)
                      +++|++||..|-+..-.++++..||+-++|+     -+||++. +-+|++.|+..+.+-++|.+|-.             
T Consensus       123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-------------  189 (397)
T KOG4283|consen  123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-------------  189 (397)
T ss_pred             cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-------------
Confidence            3899999999999999999999999998863     3566644 45999999999999999988732             


Q ss_pred             ccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccc
Q 002446          279 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF  358 (921)
Q Consensus       279 ~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~  358 (921)
                       +.+|+.     .+             |.              .+                              |    
T Consensus       190 -~vlaV~-----Ws-------------p~--------------~e------------------------------~----  202 (397)
T KOG4283|consen  190 -GVLAVE-----WS-------------PS--------------SE------------------------------W----  202 (397)
T ss_pred             -ceEEEE-----ec-------------cC--------------ce------------------------------e----
Confidence             223331     00             00              00                              0    


Q ss_pred             cCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCC------------c---eEEEeccCCCCeEEEEECCCCC
Q 002446          359 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK------------N---VIAQFRAHKSPISALCFDPSGI  423 (921)
Q Consensus       359 ~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~------------~---~l~~~~aH~~pIsaLaFSPdGt  423 (921)
                                             .++++..||.|++||+..-            +   .+.+-.+|.+.|..+||+.||.
T Consensus       203 -----------------------vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~  259 (397)
T KOG4283|consen  203 -----------------------VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR  259 (397)
T ss_pred             -----------------------EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence                                   1223456778888887532            1   1222347889999999999999


Q ss_pred             EEEEEecCCCEEEEEeCCCC
Q 002446          424 LLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       424 lLATaS~DGt~IrIWdi~~g  443 (921)
                      +|++++.|.+ +++|+...|
T Consensus       260 ~l~~~gtd~r-~r~wn~~~G  278 (397)
T KOG4283|consen  260 YLASCGTDDR-IRVWNMESG  278 (397)
T ss_pred             hhhhccCccc-eEEeecccC
Confidence            9999999977 999998876

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=1.7e-11  Score=142.61  Aligned_cols=214  Identities=16%  Similarity=0.260  Sum_probs=153.6

Q ss_pred             eEEEEEccC-cEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 002446          108 RVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT  186 (921)
Q Consensus       108 ~vLllG~~~-GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~  186 (921)
                      ++++.|... .+-+|.+.... ..--+..|+++|.++.+-+.              .-||+   .|+             
T Consensus        41 r~~~~Gg~~~k~~L~~i~kp~-~i~S~~~hespIeSl~f~~~--------------E~Lla---ags-------------   89 (825)
T KOG0267|consen   41 RSLVTGGEDEKVNLWAIGKPN-AITSLTGHESPIESLTFDTS--------------ERLLA---AGS-------------   89 (825)
T ss_pred             eeeccCCCceeeccccccCCc-hhheeeccCCcceeeecCcc--------------hhhhc---ccc-------------
Confidence            555555544 45588886643 22235579999999987541              11232   111             


Q ss_pred             ccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEcC--CEEEE-EeCCEEEEEECCCCcEEEEEec
Q 002446          187 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYAILT  262 (921)
Q Consensus       187 ~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~--riLAV-a~d~~I~IwDl~T~~~l~tL~t  262 (921)
                                       ..++|+||||..++.+++|.. ...+.+|.|++  .+.|. +.+..+.+||.+..-|.++...
T Consensus        90 -----------------asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s  152 (825)
T KOG0267|consen   90 -----------------ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS  152 (825)
T ss_pred             -----------------cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC
Confidence                             127899999999999999875 67899999984  56666 7899999999998888888765


Q ss_pred             CCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEe
Q 002446          263 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN  342 (921)
Q Consensus       263 ~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~  342 (921)
                      |+.               .+    +.|++.             |.              |.++                 
T Consensus       153 ~~~---------------vv----~~l~ls-------------P~--------------Gr~v-----------------  169 (825)
T KOG0267|consen  153 HTR---------------VV----DVLRLS-------------PD--------------GRWV-----------------  169 (825)
T ss_pred             Ccc---------------ee----EEEeec-------------CC--------------Ccee-----------------
Confidence            521               11    233333             11              1111                 


Q ss_pred             cCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCC
Q 002446          343 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG  422 (921)
Q Consensus       343 lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdG  422 (921)
                                                               ++++.|.+|+|||+..|+.+..|+.|...|.++.|.|..
T Consensus       170 -----------------------------------------~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e  208 (825)
T KOG0267|consen  170 -----------------------------------------ASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE  208 (825)
T ss_pred             -----------------------------------------eccCCcceeeeecccccccccccccccccccccccCchh
Confidence                                                     123446889999999999999999999999999999999


Q ss_pred             CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 002446          423 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR  490 (921)
Q Consensus       423 tlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~D  490 (921)
                      -+|+++|.|++ +++||+.+.              ..+-..  +.....|++.+|+||++.+++|-..
T Consensus       209 ~Lla~Gs~d~t-v~f~dletf--------------e~I~s~--~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  209 VLLAPGSSDRT-VRFWDLETF--------------EVISSG--KPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             hhhccCCCCce-eeeecccee--------------EEeecc--CCccCCceeeeecCCceeeecCchh
Confidence            99999999987 899999974              222221  1112359999999999999988654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.22  E-value=2e-10  Score=132.51  Aligned_cols=121  Identities=17%  Similarity=0.245  Sum_probs=80.9

Q ss_pred             CCCEEEEEECCCCc------eEEE--eccC---CCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCc
Q 002446          388 NVGMVIVRDIVSKN------VIAQ--FRAH---KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS  456 (921)
Q Consensus       388 ~~G~V~IwDl~s~~------~l~~--~~aH---~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~  456 (921)
                      .|+.|+|||+....      +...  +.-|   .-.+++|..+..|++|.....|++ |..|++.......         
T Consensus       238 ~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s-Iy~ynm~s~s~sP---------  307 (720)
T KOG0321|consen  238 ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS-IYFYNMRSLSISP---------  307 (720)
T ss_pred             CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc-EEEEeccccCcCc---------
Confidence            48999999998643      2222  2233   236889999999998777777876 8999988641100         


Q ss_pred             eeEEEEEecccccccE-EEEEEccCCCEEEEEeCCCcEEEEecCCCCCce-eecCCCCCcccccCCcCCccccCCCC
Q 002446          457 YVHLYRLQRGLTNAVI-QDISFSDDSNWIMISSSRGTSHLFAINPLGGSV-NFQPTDANFTTKHGAMAKSGVRWPPN  531 (921)
Q Consensus       457 ~~~l~~l~RG~t~a~I-~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~-~l~~H~~~~~~~~~~~~~~~~r~~~~  531 (921)
                         +..+ -|.-...+ ..=..|||+.+|++|+.|.-..+|.++.....+ .+.+|+-++.         +++|.+.
T Consensus       308 ---~~~~-sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt---------~V~w~pS  371 (720)
T KOG0321|consen  308 ---VAEF-SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVT---------TVRWLPS  371 (720)
T ss_pred             ---hhhc-cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEE---------EEeeccc
Confidence               0000 11111111 123469999999999999999999999877765 4578865554         5666654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=9.8e-10  Score=126.07  Aligned_cols=309  Identities=17%  Similarity=0.175  Sum_probs=188.9

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCC
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRP  164 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rP  164 (921)
                      +|++.|..++.|.   .|    ..|+.|.+.| ++||-+.+ +.+...+. -|+.|+|+++.|.+            ..+
T Consensus       398 GHtg~Vr~iSvdp---~G----~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~------------~~~  456 (733)
T KOG0650|consen  398 GHTGLVRSISVDP---SG----EWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLS------------DLC  456 (733)
T ss_pred             ccCCeEEEEEecC---Cc----ceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCC------------Cce
Confidence            7899999999988   55    6889999777 89999998 44444444 57899999998864            357


Q ss_pred             EEEEEeCCCCcCCccccCCccccc-CC-CCCCcCCCCCCCCCCcEEEEEECC---CCc--EEEEEeCCCCEEEEEEc--C
Q 002446          165 LLVFCADGSRSCGTKVQDGLATAC-NG-TSANYHDLGNGSSVPTVVHFYSLR---SQS--YVHMLKFRSPIYSVRCS--S  235 (921)
Q Consensus       165 LLAvv~~g~~~g~~~~~Dg~~~~~-~g-~~~~~h~~g~~~~~~~tVrIWDL~---Tg~--~V~tL~f~s~V~sV~~S--~  235 (921)
                      +||++-+... .  .+.+..+... .+ +.-..+...+....+..|-.|.-.   .++  ...+|++..+|..|.+-  +
T Consensus       457 vLAvA~~~~~-~--ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG  533 (733)
T KOG0650|consen  457 VLAVAVGECV-L--IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG  533 (733)
T ss_pred             eEEEEecCce-E--EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence            8888776541 0  1111111000 00 000011112333455678899644   222  33567889999999995  6


Q ss_pred             CEEEEEeC----CEEEEEECCCCcEE--E-EEecCCCccCCCCCCCCCccccceeecC--ceEEecCCCceecCCCccCC
Q 002446          236 RVVAICQA----AQVHCFDAATLEIE--Y-AILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNP  306 (921)
Q Consensus       236 riLAVa~d----~~I~IwDl~T~~~l--~-tL~t~p~~~g~p~~~g~~i~~~piAlgp--RwLAyas~~~~~s~~GrvsP  306 (921)
                      ++||+...    ..|.|+++....-.  + ...+.+.               .+.+.|  -+|-.++..           
T Consensus       534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq---------------~v~FHPs~p~lfVaTq~-----------  587 (733)
T KOG0650|consen  534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQ---------------RVKFHPSKPYLFVATQR-----------  587 (733)
T ss_pred             ceEEEeccCCCcceEEEEecccccccCchhhcCCcee---------------EEEecCCCceEEEEecc-----------
Confidence            89988544    69999998754321  1 1111100               011111  111111110           


Q ss_pred             cccccccccccccCCCcceeehh---hhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcc
Q 002446          307 QHLMQSRSFSGFASNGSRVAHYA---KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHF  383 (921)
Q Consensus       307 q~l~~s~~~~~~~s~g~~Va~~A---~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~  383 (921)
                                       .|..|.   .+.-|.|..|.+++.-+..          .|.|.                  ++
T Consensus       588 -----------------~vRiYdL~kqelvKkL~tg~kwiS~msi----------hp~GD------------------nl  622 (733)
T KOG0650|consen  588 -----------------SVRIYDLSKQELVKKLLTGSKWISSMSI----------HPNGD------------------NL  622 (733)
T ss_pred             -----------------ceEEEehhHHHHHHHHhcCCeeeeeeee----------cCCCC------------------eE
Confidence                             111111   1334555555555544321          12111                  23


Q ss_pred             cccCCCCEEEEEECCC-CceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 002446          384 PDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR  462 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s-~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~  462 (921)
                      +-+..++.+..+|+.- .++..+++-|...|++|+|.+.=-++|+||.||+ +.||--+-...-     -.......+..
T Consensus       623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~VY~Dl-----~qnpliVPlK~  696 (733)
T KOG0650|consen  623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGMVYNDL-----LQNPLIVPLKR  696 (733)
T ss_pred             EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEeeeeehhh-----hcCCceEeeee
Confidence            3456788999999984 4678899999999999999999999999999998 678854432000     00012344555


Q ss_pred             Eecccccc---cEEEEEEccCCCEEEEEeCCCcEEEE
Q 002446          463 LQRGLTNA---VIQDISFSDDSNWIMISSSRGTSHLF  496 (921)
Q Consensus       463 l~RG~t~a---~I~sIaFSPDg~~LAsgS~DgTVhVW  496 (921)
                      | |||...   -|.++.|.|.--||.+++.||||++|
T Consensus       697 L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  697 L-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             c-cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            5 455322   18899999999999999999999999

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.21  E-value=1.2e-09  Score=122.45  Aligned_cols=177  Identities=18%  Similarity=0.199  Sum_probs=129.1

Q ss_pred             cEEEEEECCCCcEEEEEeC-CCCEEEEEEc---CCEEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccc
Q 002446          206 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP  281 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S---~riLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~p  281 (921)
                      +.|.|||.+|.+.++.++. +..|.+++|-   .++.+.+.|..|++|++..+..+.++-+|+..              .
T Consensus       224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~--------------v  289 (479)
T KOG0299|consen  224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG--------------V  289 (479)
T ss_pred             ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc--------------e
Confidence            7799999999999999875 6799999994   57888899999999999988776666665321              1


Q ss_pred             eeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCC
Q 002446          282 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD  361 (921)
Q Consensus       282 iAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~  361 (921)
                      ++++    |.+          +                  +.                                      
T Consensus       290 ~~Id----aL~----------r------------------eR--------------------------------------  299 (479)
T KOG0299|consen  290 LGID----ALS----------R------------------ER--------------------------------------  299 (479)
T ss_pred             eeec----hhc----------c------------------cc--------------------------------------
Confidence            1110    000          0                  00                                      


Q ss_pred             CcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCC
Q 002446          362 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII  441 (921)
Q Consensus       362 ~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~  441 (921)
                                          .+.-++.|.++++|++..- ..-.|++|.+.|-|++|=.+- .++|+|++|. |-+|++.
T Consensus       300 --------------------~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~-HfvsGSdnG~-IaLWs~~  356 (479)
T KOG0299|consen  300 --------------------CVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDE-HFVSGSDNGS-IALWSLL  356 (479)
T ss_pred             --------------------eEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEeccc-ceeeccCCce-EEEeeec
Confidence                                0011346789999999543 345788999999999998654 6899999997 9999998


Q ss_pred             CCCCCCCCccCCCCceeEEEEEeccccc--------ccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          442 PGILGTSSACDAGTSYVHLYRLQRGLTN--------AVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       442 ~g~~~~~s~~~~~~~~~~l~~l~RG~t~--------a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      .-.+            ..++.+..|..+        ..|++|+-.|.+..+|+||.+|.|+||.++++
T Consensus       357 KKkp------------lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  357 KKKP------------LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ccCc------------eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            6411            111121111111        24999999999999999999999999999886

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.21  E-value=9.6e-10  Score=123.18  Aligned_cols=99  Identities=22%  Similarity=0.328  Sum_probs=77.1

Q ss_pred             CCCEEEEEECCCCce-EEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 002446          388 NVGMVIVRDIVSKNV-IAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR  465 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~-l~~~~aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~R  465 (921)
                      +-|...+||+.++.. ...++-|...|+.|+|+|- -.+|||||.|+| .+|||+..- .+..+        -.++.+. 
T Consensus       299 ~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l-~~K~s--------p~lst~~-  367 (498)
T KOG4328|consen  299 NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQL-RGKAS--------PFLSTLP-  367 (498)
T ss_pred             cccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhh-cCCCC--------cceeccc-
Confidence            346788999987654 7788899999999999995 568999999998 899999864 11100        0244442 


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 002446          466 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       466 G~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                        +...|.+..|||++--|++.+.|.+|+|||..
T Consensus       368 --HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  368 --HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             --ccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence              22349999999988889999999999999985

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.21  E-value=6.3e-11  Score=143.87  Aligned_cols=247  Identities=17%  Similarity=0.218  Sum_probs=168.0

Q ss_pred             EEEecccCCC--CCCCeEEEEEccCc-EEEEEccCC--CCeEEee---eeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           94 AGFDKLESEA--GATRRVLLLGYRSG-FQVWDVEEA--DNVHDLV---SRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        94 ~~Fd~~~~d~--~~~~~vLllG~~~G-fqVWDv~~~--~~~~elv---S~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      -+|++|.+..  +...-+|+.|.++| +-+||.+..  ++-.+++   +.|.|+|+.+.|-+.             .+++
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~-------------q~nl  131 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF-------------QGNL  131 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc-------------CCce
Confidence            4666665432  11235888888776 899999873  4444444   578999999988642             3467


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEE---eCCCCEEEEEEcC---CEEE
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHML---KFRSPIYSVRCSS---RVVA  239 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL---~f~s~V~sV~~S~---riLA  239 (921)
                      ||.+++                                 .+.|.||||..-+.-.+.   .+.+.|..|++|+   ++||
T Consensus       132 LASGa~---------------------------------~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILA  178 (1049)
T KOG0307|consen  132 LASGAD---------------------------------DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILA  178 (1049)
T ss_pred             eeccCC---------------------------------CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhh
Confidence            764432                                 156999999875543333   3578899999985   6788


Q ss_pred             EE-eCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccc
Q 002446          240 IC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF  318 (921)
Q Consensus       240 Va-~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~  318 (921)
                      .+ ..+++.|||++.-+.+-.+..++..          -.++.       |++.             |+           
T Consensus       179 S~s~sg~~~iWDlr~~~pii~ls~~~~~----------~~~S~-------l~Wh-------------P~-----------  217 (1049)
T KOG0307|consen  179 SGSPSGRAVIWDLRKKKPIIKLSDTPGR----------MHCSV-------LAWH-------------PD-----------  217 (1049)
T ss_pred             ccCCCCCceeccccCCCcccccccCCCc----------cceee-------eeeC-------------CC-----------
Confidence            74 4569999999977654444332110          00011       1111             21           


Q ss_pred             cCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECC
Q 002446          319 ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV  398 (921)
Q Consensus       319 ~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~  398 (921)
                                                                 ....+..++              +.+..-.|.+||++
T Consensus       218 -------------------------------------------~aTql~~As--------------~dd~~PviqlWDlR  240 (1049)
T KOG0307|consen  218 -------------------------------------------HATQLLVAS--------------GDDSAPVIQLWDLR  240 (1049)
T ss_pred             -------------------------------------------Cceeeeeec--------------CCCCCceeEeeccc
Confidence                                                       111111111              11234579999987


Q ss_pred             C-CceEEEeccCCCCeEEEEECCCC-CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEE
Q 002446          399 S-KNVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS  476 (921)
Q Consensus       399 s-~~~l~~~~aH~~pIsaLaFSPdG-tlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIa  476 (921)
                      . ..++.+++.|...|.+|.|.+.+ ++|+|++.|++ |-+|+..++              +.++++-++  ...+.++.
T Consensus       241 ~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tg--------------Evl~~~p~~--~nW~fdv~  303 (1049)
T KOG0307|consen  241 FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTG--------------EVLGELPAQ--GNWCFDVQ  303 (1049)
T ss_pred             ccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCc--------------eEeeecCCC--Ccceeeee
Confidence            5 45788899999999999999976 99999999998 889999886              567777542  23489999


Q ss_pred             EccCCC-EEEEEeCCCcEEEEecCCC
Q 002446          477 FSDDSN-WIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       477 FSPDg~-~LAsgS~DgTVhVWdi~~~  501 (921)
                      |+|-.- .||++|-||+|-||.+...
T Consensus       304 w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  304 WCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             ecCCCcchhhhheeccceeeeeeecC
Confidence            999554 8999999999999999764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.20  E-value=1.6e-09  Score=120.81  Aligned_cols=239  Identities=17%  Similarity=0.257  Sum_probs=160.0

Q ss_pred             CCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        86 ~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      +|.-.|+|+.|.+   +.   +.++....+..|+||.+.... ...+..-|+++|.++..-|+.              -+
T Consensus       259 Gh~kki~~v~~~~---~~---~~v~~aSad~~i~vws~~~~s-~~~~~~~h~~~V~~ls~h~tg--------------eY  317 (506)
T KOG0289|consen  259 GHTKKITSVKFHK---DL---DTVITASADEIIRVWSVPLSS-EPTSSRPHEEPVTGLSLHPTG--------------EY  317 (506)
T ss_pred             CcceEEEEEEecc---ch---hheeecCCcceEEeecccccc-CccccccccccceeeeeccCC--------------cE
Confidence            5666799999988   43   245555556679999998854 445566789999999886641              23


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCC-C--CEEEEEEcC--CEEEE
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFR-S--PIYSVRCSS--RVVAI  240 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~-s--~V~sV~~S~--riLAV  240 (921)
                      |.-+++                                 +++..|.|+++|.++...... +  .+.+..|-+  -+++.
T Consensus       318 llsAs~---------------------------------d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgt  364 (506)
T KOG0289|consen  318 LLSASN---------------------------------DGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGT  364 (506)
T ss_pred             EEEecC---------------------------------CceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEec
Confidence            332221                                 267889999999988777664 2  467788864  45555


Q ss_pred             -EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccccccccccc
Q 002446          241 -CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFA  319 (921)
Q Consensus       241 -a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~  319 (921)
                       ..++.|+|||+........+         |+      +.+|+    +-|+|+                           
T Consensus       365 gt~d~~vkiwdlks~~~~a~F---------pg------ht~~v----k~i~Fs---------------------------  398 (506)
T KOG0289|consen  365 GTPDGVVKIWDLKSQTNVAKF---------PG------HTGPV----KAISFS---------------------------  398 (506)
T ss_pred             cCCCceEEEEEcCCccccccC---------CC------CCCce----eEEEec---------------------------
Confidence             67889999999876533222         21      12333    223443                           


Q ss_pred             CCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCC
Q 002446          320 SNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS  399 (921)
Q Consensus       320 s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s  399 (921)
                                               |.|      |+                           ++.+.+++.|++||++.
T Consensus       399 -------------------------ENG------Y~---------------------------Lat~add~~V~lwDLRK  420 (506)
T KOG0289|consen  399 -------------------------ENG------YW---------------------------LATAADDGSVKLWDLRK  420 (506)
T ss_pred             -------------------------cCc------eE---------------------------EEEEecCCeEEEEEehh
Confidence                                     222      22                           12345677899999998


Q ss_pred             CceEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCC-CCCCCccCCCCceeEEEEEecccccccEEEEEE
Q 002446          400 KNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI-LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF  477 (921)
Q Consensus       400 ~~~l~~~~-aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~-~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaF  477 (921)
                      .+...+|. .-..+|.+++|+++|++|+.++.|   ++||-..... .|           .++..+.  .+.+..+.+.|
T Consensus       421 l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~---l~Vy~~~k~~k~W-----------~~~~~~~--~~sg~st~v~F  484 (506)
T KOG0289|consen  421 LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD---LQVYICKKKTKSW-----------TEIKELA--DHSGLSTGVRF  484 (506)
T ss_pred             hcccceeeccccccceeEEEcCCCCeEEeecce---eEEEEEecccccc-----------eeeehhh--hcccccceeee
Confidence            88777776 334589999999999999999665   5555444210 11           1222221  12234778999


Q ss_pred             ccCCCEEEEEeCCCcEEEEec
Q 002446          478 SDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       478 SPDg~~LAsgS~DgTVhVWdi  498 (921)
                      -.+.++++++|+|...+|+.+
T Consensus       485 g~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  485 GEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cccceEEeeccchhheEEeec
Confidence            999999999999999999875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=2.6e-10  Score=123.00  Aligned_cols=107  Identities=15%  Similarity=0.244  Sum_probs=87.6

Q ss_pred             ccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR  462 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~  462 (921)
                      ++++..+-+|.|||+. |+.+.++......-...+.||+|++||+++..-. ++||.+--+..|.      ..++..++.
T Consensus       202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD-VkVwE~~f~kdG~------fqev~rvf~  273 (420)
T KOG2096|consen  202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD-VKVWEPIFTKDGT------FQEVKRVFS  273 (420)
T ss_pred             EEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC-ceEEEEEeccCcc------hhhhhhhhe
Confidence            4566778899999999 8999999988888888999999999999998765 8999876432221      223455667


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 002446          463 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       463 l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                      | .||..+ |..+||||+++.+++.|.||+.+|||++
T Consensus       274 L-kGH~sa-V~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  274 L-KGHQSA-VLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             e-ccchhh-eeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            7 476655 9999999999999999999999999986

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=2.2e-09  Score=128.16  Aligned_cols=236  Identities=15%  Similarity=0.208  Sum_probs=159.8

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCE
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPL  165 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPL  165 (921)
                      +.+.|.|+.-+-         ..|+.|. ++.+++|.... ++...++-+-.-|++++.+.              +.+.+
T Consensus        55 ~g~~v~~ia~~s---------~~f~~~s~~~tv~~y~fps-~~~~~iL~Rftlp~r~~~v~--------------g~g~~  110 (933)
T KOG1274|consen   55 SGELVSSIACYS---------NHFLTGSEQNTVLRYKFPS-GEEDTILARFTLPIRDLAVS--------------GSGKM  110 (933)
T ss_pred             cCceeEEEeecc---------cceEEeeccceEEEeeCCC-CCccceeeeeeccceEEEEe--------------cCCcE
Confidence            456677776554         2455555 55689999987 55666777777777777764              23455


Q ss_pred             EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-CCCCEEEEEEc--CCEEEE-E
Q 002446          166 LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-C  241 (921)
Q Consensus       166 LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S--~riLAV-a  241 (921)
                      +|..++                                 +..|++-++.+....+.++ +..+|..|.++  +.+||| +
T Consensus       111 iaagsd---------------------------------D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss  157 (933)
T KOG1274|consen  111 IAAGSD---------------------------------DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS  157 (933)
T ss_pred             EEeecC---------------------------------ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe
Confidence            554443                                 1669999999887777775 57899999996  578998 6


Q ss_pred             eCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCC
Q 002446          242 QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN  321 (921)
Q Consensus       242 ~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~  321 (921)
                      -+++|+|||+.++.+.+++..-......       +. +.+.   .-+|+                              
T Consensus       158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~-------~~-s~i~---~~~aW------------------------------  196 (933)
T KOG1274|consen  158 CDGKVQIWDLQDGILSKTLTGVDKDNEF-------IL-SRIC---TRLAW------------------------------  196 (933)
T ss_pred             cCceEEEEEcccchhhhhcccCCccccc-------cc-ccee---eeeee------------------------------
Confidence            7899999999999988887542110000       00 0000   00011                              


Q ss_pred             CcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCc
Q 002446          322 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN  401 (921)
Q Consensus       322 g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~  401 (921)
                                                           .|+                  +++++-...++.|++|+..+..
T Consensus       197 -------------------------------------~Pk------------------~g~la~~~~d~~Vkvy~r~~we  221 (933)
T KOG1274|consen  197 -------------------------------------HPK------------------GGTLAVPPVDNTVKVYSRKGWE  221 (933)
T ss_pred             -------------------------------------cCC------------------CCeEEeeccCCeEEEEccCCce
Confidence                                                 111                  0123333456889999999988


Q ss_pred             eEEEec--cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEcc
Q 002446          402 VIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD  479 (921)
Q Consensus       402 ~l~~~~--aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSP  479 (921)
                      ....++  -|.+.+++++|||.|+|||+++.||. |-|||+.+.             .+|  +++     ..|.+++|-|
T Consensus       222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~-I~vWnv~t~-------------~~~--~~~-----~~Vc~~aw~p  280 (933)
T KOG1274|consen  222 LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ-ILVWNVDTH-------------ERH--EFK-----RAVCCEAWKP  280 (933)
T ss_pred             eheeecccccccceEEEEEcCCCcEEeeeccCCc-EEEEecccc-------------hhc--ccc-----ceeEEEecCC
Confidence            877776  34455999999999999999999997 899999874             112  222     2399999999


Q ss_pred             CCCEEEEEeCCCcEEEE
Q 002446          480 DSNWIMISSSRGTSHLF  496 (921)
Q Consensus       480 Dg~~LAsgS~DgTVhVW  496 (921)
                      ++.-+-.-..-|+.-+|
T Consensus       281 ~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  281 NANAITLITALGTLGVS  297 (933)
T ss_pred             CCCeeEEEeeccccccC
Confidence            99877666555554444

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.19  E-value=1.3e-09  Score=117.33  Aligned_cols=266  Identities=13%  Similarity=0.173  Sum_probs=166.7

Q ss_pred             CCCCCCCCcEEEEEEecccCCCCCCCeEEEEEc-cCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccc
Q 002446           82 RDDESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFA  160 (921)
Q Consensus        82 ~~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~-~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~  160 (921)
                      ++-++|||.|--+.-+.   .    +.++..+. +..-+||.++. +.|.-.+..|-|.|.+++|.+.            
T Consensus       142 re~~GHkDGiW~Vaa~~---t----qpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikfh~s------------  201 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADS---T----QPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKFHNS------------  201 (481)
T ss_pred             hhhcccccceeeehhhc---C----CcceeecccccceeEEeecc-ccceeeecccccceeeEEeccc------------
Confidence            67889999998777766   2    23444443 66789999998 6787778899999999999752            


Q ss_pred             cCCCEEEEEeCCCCcCCccccCC--cccccCCCCCC--------cCCC-------CCCCCCCcEEEEEECCCCcEEEEEe
Q 002446          161 EVRPLLVFCADGSRSCGTKVQDG--LATACNGTSAN--------YHDL-------GNGSSVPTVVHFYSLRSQSYVHMLK  223 (921)
Q Consensus       161 ~~rPLLAvv~~g~~~g~~~~~Dg--~~~~~~g~~~~--------~h~~-------g~~~~~~~tVrIWDL~Tg~~V~tL~  223 (921)
                        +-|++..+++..   +..=..  .......+.+.        +|.+       +.......+||+       .+..|+
T Consensus       202 --~~L~lTaSGD~t---aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv-------Pl~~lt  269 (481)
T KOG0300|consen  202 --GLLLLTASGDET---AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV-------PLMRLT  269 (481)
T ss_pred             --cceEEEccCCcc---hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee-------eeeeee
Confidence              234333332111   000000  00000000011        1111       111111223332       344444


Q ss_pred             C-CCCEEEEEE--c-CCEEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceec
Q 002446          224 F-RSPIYSVRC--S-SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVS  299 (921)
Q Consensus       224 f-~s~V~sV~~--S-~riLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s  299 (921)
                      - .+.|.+-.+  . .+++..+-|.+-.+||+.|++.++.|.+|.....-            ++      +.        
T Consensus       270 gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtH------------cs------tH--------  323 (481)
T KOG0300|consen  270 GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTH------------CS------TH--------  323 (481)
T ss_pred             ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccc------------cc------cC--------
Confidence            3 455555555  2 35666688999999999999998888776332100            00      00        


Q ss_pred             CCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcc
Q 002446          300 NDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTV  379 (921)
Q Consensus       300 ~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v  379 (921)
                            |.                          +.                                            
T Consensus       324 ------pt--------------------------Qr--------------------------------------------  327 (481)
T KOG0300|consen  324 ------PT--------------------------QR--------------------------------------------  327 (481)
T ss_pred             ------Cc--------------------------ce--------------------------------------------
Confidence                  00                          00                                            


Q ss_pred             cCcccccCCCCEEEEEECCC-CceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 002446          380 NGHFPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV  458 (921)
Q Consensus       380 ~g~~~s~~~~G~V~IwDl~s-~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~  458 (921)
                        ..++...|-+.++||+.. -..+..|++|+..|+++.|..|.+ ++++|+|.| |+|||+..-             ..
T Consensus       328 --LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrT-vKvWdLrNM-------------Rs  390 (481)
T KOG0300|consen  328 --LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRT-VKVWDLRNM-------------RS  390 (481)
T ss_pred             --EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCce-EEEeeeccc-------------cC
Confidence              011234466899999974 356789999999999999998876 788999976 999999864             12


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          459 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       459 ~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      .+.+++   +...++-|+.|.-+..||.--+..-|+|||++-.
T Consensus       391 plATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  391 PLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             cceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence            244553   2345889999999999999999999999999753

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.19  E-value=9.2e-11  Score=128.18  Aligned_cols=214  Identities=13%  Similarity=0.227  Sum_probs=137.1

Q ss_pred             cEEEEEECCCCcEEEEEeC-CCCEEEEEEc-CCEEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCcccccee
Q 002446          206 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA  283 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S-~riLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piA  283 (921)
                      +.|+||||.+.+++.+++. .+.|..|.+. ..++.|+.|++|+.|-+.- ..++++.......+.--.     ..+   
T Consensus        89 G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~-----~~~---  159 (433)
T KOG0268|consen   89 GEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHH-----RKN---  159 (433)
T ss_pred             ceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeeccccccccccc-----ccc---
Confidence            7799999999999999986 5699999996 5788889999999998765 356666543222111000     000   


Q ss_pred             ecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCc
Q 002446          284 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ  363 (921)
Q Consensus       284 lgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~  363 (921)
                         .-.|..+.++.+|..-|..|-.                          .+        .+|+.+|..          
T Consensus       160 ---~~FaTcGe~i~IWD~~R~~Pv~--------------------------sm--------swG~Dti~s----------  192 (433)
T KOG0268|consen  160 ---SVFATCGEQIDIWDEQRDNPVS--------------------------SM--------SWGADSISS----------  192 (433)
T ss_pred             ---ccccccCceeeecccccCCccc--------------------------ee--------ecCCCceeE----------
Confidence               0112222233333222211110                          00        001111000          


Q ss_pred             CCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCC
Q 002446          364 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       364 ~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g  443 (921)
                        + ..+|.      -...++++..++.|.|||+...+++..+-- +..-..|||+|.+--+++|++|- .+..||+..-
T Consensus       193 --v-kfNpv------ETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~-nlY~~DmR~l  261 (433)
T KOG0268|consen  193 --V-KFNPV------ETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDH-NLYTYDMRNL  261 (433)
T ss_pred             --E-ecCCC------cchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccc-cceehhhhhh
Confidence              0 01111      112344566889999999999887654431 12335689999998999999995 5889988753


Q ss_pred             CCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          444 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       444 ~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                                    .+-...++||.+| |.++.|||.|+-|++||-|.||+||.++..
T Consensus       262 --------------~~p~~v~~dhvsA-V~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  262 --------------SRPLNVHKDHVSA-VMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             --------------cccchhhccccee-EEEeccCCCcchhccccccceEEEeecCCC
Confidence                          1222345788877 999999999999999999999999999875

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.18  E-value=2.2e-09  Score=115.93  Aligned_cols=223  Identities=14%  Similarity=0.259  Sum_probs=138.8

Q ss_pred             eEEEEEc-cCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 002446          108 RVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT  186 (921)
Q Consensus       108 ~vLllG~-~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~  186 (921)
                      ..++.|. +..+.|||+....+... +..|.|.|.++++.+. .          .+..||+...           |    
T Consensus        54 ~~~aSGssDetI~IYDm~k~~qlg~-ll~HagsitaL~F~~~-~----------S~shLlS~sd-----------D----  106 (362)
T KOG0294|consen   54 PYVASGSSDETIHIYDMRKRKQLGI-LLSHAGSITALKFYPP-L----------SKSHLLSGSD-----------D----  106 (362)
T ss_pred             eeEeccCCCCcEEEEeccchhhhcc-eeccccceEEEEecCC-c----------chhheeeecC-----------C----
Confidence            5666665 66799999998554444 4458999999999763 1          1124443221           1    


Q ss_pred             ccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEE--cCCE-EEEEeCCEEEEEECCCCcEEEEEec
Q 002446          187 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRC--SSRV-VAICQAAQVHCFDAATLEIEYAILT  262 (921)
Q Consensus       187 ~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~--S~ri-LAVa~d~~I~IwDl~T~~~l~tL~t  262 (921)
                                         +.|.+|+...-+++++|+- ...|..|++  ++++ |+|..|..++.||+.+++.-+.+.-
T Consensus       107 -------------------G~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L  167 (362)
T KOG0294|consen  107 -------------------GHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL  167 (362)
T ss_pred             -------------------CcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc
Confidence                               5699999999999999985 568999999  4454 5668899999999999987655432


Q ss_pred             CCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEe
Q 002446          263 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN  342 (921)
Q Consensus       263 ~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~  342 (921)
                      ...               +-  .-+|++-++.-...   +   +                ..|-.|-.+.++-       
T Consensus       168 ~~~---------------at--~v~w~~~Gd~F~v~---~---~----------------~~i~i~q~d~A~v-------  201 (362)
T KOG0294|consen  168 KNK---------------AT--LVSWSPQGDHFVVS---G---R----------------NKIDIYQLDNASV-------  201 (362)
T ss_pred             CCc---------------ce--eeEEcCCCCEEEEE---e---c----------------cEEEEEecccHhH-------
Confidence            111               00  01233211100000   0   0                0010111111110       


Q ss_pred             cCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEE--CC
Q 002446          343 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF--DP  420 (921)
Q Consensus       343 lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaF--SP  420 (921)
                           +..+..      |.   -+..+.+..      .+.+..+..++.|.+||..+..++..|.+|...|-.+.|  +|
T Consensus       202 -----~~~i~~------~~---r~l~~~~l~------~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~  261 (362)
T KOG0294|consen  202 -----FREIEN------PK---RILCATFLD------GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNP  261 (362)
T ss_pred             -----hhhhhc------cc---cceeeeecC------CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecC
Confidence                 000000      00   000011110      113345667799999999999999999999999999883  77


Q ss_pred             CCCEEEEEecCCCEEEEEeCCCC
Q 002446          421 SGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       421 dGtlLATaS~DGt~IrIWdi~~g  443 (921)
                      ++.+|+|+|.||. |+|||+...
T Consensus       262 ~~~~lvTaSSDG~-I~vWd~~~~  283 (362)
T KOG0294|consen  262 EHEYLVTASSDGF-IKVWDIDME  283 (362)
T ss_pred             CceEEEEeccCce-EEEEEcccc
Confidence            8999999999996 999999874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.17  E-value=2.3e-10  Score=125.65  Aligned_cols=118  Identities=17%  Similarity=0.287  Sum_probs=88.5

Q ss_pred             ccccCCCCEEEEEECCCCc---eEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 002446          383 FPDADNVGMVIVRDIVSKN---VIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV  458 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~---~l~~~~aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~  458 (921)
                      +.+++..+.|++|...++.   -...|.+|+..|-.|++||. ..+||+||.||+ |+|||+..+..         .  .
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~---------~--~  294 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPK---------K--A  294 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCc---------c--c
Confidence            4556677889999988764   22456689999999999996 568999999997 99999987511         1  1


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc---eeecCCCCCcc
Q 002446          459 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS---VNFQPTDANFT  515 (921)
Q Consensus       459 ~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~---~~l~~H~~~~~  515 (921)
                      ++.+  .. +.+.|+-|+|+.+-.+||+|++|||++||||......   ..|..|..++.
T Consensus       295 ~~~~--kA-h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt  351 (440)
T KOG0302|consen  295 AVST--KA-HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT  351 (440)
T ss_pred             eeEe--ec-cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence            2222  12 3457999999999899999999999999999865332   35566644444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=5.3e-09  Score=121.75  Aligned_cols=248  Identities=15%  Similarity=0.208  Sum_probs=171.5

Q ss_pred             CCCCCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCcccc
Q 002446           82 RDDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        82 ~~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~  161 (921)
                      .+.+++-|.+.|+   .   ++    +++.+|.++.+.-||+.+ .+.+......-|++..+++.|.             
T Consensus        66 g~~drsIE~L~W~---e---~~----RLFS~g~sg~i~EwDl~~-lk~~~~~d~~gg~IWsiai~p~-------------  121 (691)
T KOG2048|consen   66 GPEDRSIESLAWA---E---GG----RLFSSGLSGSITEWDLHT-LKQKYNIDSNGGAIWSIAINPE-------------  121 (691)
T ss_pred             cCCCCceeeEEEc---c---CC----eEEeecCCceEEEEeccc-CceeEEecCCCcceeEEEeCCc-------------
Confidence            4667788888888   2   23    899999999999999998 3444445556688998888653             


Q ss_pred             CCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC---CCCEEEEEEcC--C
Q 002446          162 VRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF---RSPIYSVRCSS--R  236 (921)
Q Consensus       162 ~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f---~s~V~sV~~S~--r  236 (921)
                       ...|++.+++                                 +.+.+.+...++......|   .+.|.+|.+++  .
T Consensus       122 -~~~l~Igcdd---------------------------------Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~  167 (691)
T KOG2048|consen  122 -NTILAIGCDD---------------------------------GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT  167 (691)
T ss_pred             -cceEEeecCC---------------------------------ceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence             1345555442                                 3466667666666655555   47899999985  3


Q ss_pred             -EEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccccccc
Q 002446          237 -VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSF  315 (921)
Q Consensus       237 -iLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~  315 (921)
                       +++.+.|+.|+|||+.+++.++.+ +-.. .+.               +      ...+.++|                
T Consensus       168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~-~~~~-d~l---------------~------k~~~~iVW----------------  208 (691)
T KOG2048|consen  168 KIAGGSIDGVIRIWDVKSGQTLHII-TMQL-DRL---------------S------KREPTIVW----------------  208 (691)
T ss_pred             EEEecccCceEEEEEcCCCceEEEe-eecc-ccc---------------c------cCCceEEE----------------
Confidence             344488999999999998877632 2100 000               0      00001111                


Q ss_pred             ccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEE
Q 002446          316 SGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVR  395 (921)
Q Consensus       316 ~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~Iw  395 (921)
                                             ++..|-                                   .+++++++..|+|++|
T Consensus       209 -----------------------Sv~~Lr-----------------------------------d~tI~sgDS~G~V~FW  230 (691)
T KOG2048|consen  209 -----------------------SVLFLR-----------------------------------DSTIASGDSAGTVTFW  230 (691)
T ss_pred             -----------------------EEEEee-----------------------------------cCcEEEecCCceEEEE
Confidence                                   111110                                   1134566778999999


Q ss_pred             ECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEE
Q 002446          396 DIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI  475 (921)
Q Consensus       396 Dl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sI  475 (921)
                      |...++++..++.|..-|.||+-++++.++.+|+.|+++|++......            . .-+...+|.++...|+++
T Consensus       231 d~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~------------~-~wv~~~~r~~h~hdvrs~  297 (691)
T KOG2048|consen  231 DSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK------------S-EWVINSRRDLHAHDVRSM  297 (691)
T ss_pred             cccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc------------c-ceeeeccccCCcccceee
Confidence            999999999999999999999999999999999999996665543322            1 123344555566679999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEecC
Q 002446          476 SFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       476 aFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                      +..++  .|.+|+.|.++.+=...
T Consensus       298 av~~~--~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  298 AVIEN--ALISGGRDFTLAICSSR  319 (691)
T ss_pred             eeecc--eEEecceeeEEEEcccc
Confidence            99988  88999999998875443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.16  E-value=8.4e-10  Score=128.43  Aligned_cols=207  Identities=15%  Similarity=0.228  Sum_probs=136.9

Q ss_pred             cEEEEEECCCCcEEEEEeCCC---CEEE-EEE--c--CCEEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCc
Q 002446          206 TVVHFYSLRSQSYVHMLKFRS---PIYS-VRC--S--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI  277 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s---~V~s-V~~--S--~riLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i  277 (921)
                      ++++||+-+.++++.+..|..   -|.. +++  +  .+++....|..|.+|...+.+.+++|.+|..-           
T Consensus        35 ~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn-----------  103 (745)
T KOG0301|consen   35 GTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN-----------  103 (745)
T ss_pred             CceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc-----------
Confidence            779999999888887665532   2221 333  2  34555588999999999999999999998542           


Q ss_pred             cccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCcccccccccccc
Q 002446          278 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE  357 (921)
Q Consensus       278 ~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~  357 (921)
                         .++++     ......+++                   +|-.+++             .++..|+.++.        
T Consensus       104 ---VC~ls-----~~~~~~~iS-------------------gSWD~Ta-------------kvW~~~~l~~~--------  135 (745)
T KOG0301|consen  104 ---VCSLS-----IGEDGTLIS-------------------GSWDSTA-------------KVWRIGELVYS--------  135 (745)
T ss_pred             ---eeeee-----cCCcCceEe-------------------cccccce-------------EEecchhhhcc--------
Confidence               12211     000000000                   0111111             12222333221        


Q ss_pred             ccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEE
Q 002446          358 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINI  437 (921)
Q Consensus       358 ~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrI  437 (921)
                       ++....++..+      ..+....++++..|.+|++|.-  ++.+.+|.+|+.-|..|++=|++. +++|+.||. |+.
T Consensus       136 -l~gH~asVWAv------~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~  204 (745)
T KOG0301|consen  136 -LQGHTASVWAV------ASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRL  204 (745)
T ss_pred             -cCCcchheeee------eecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEE
Confidence             11111111111      1111235678889999999975  788999999999999999999876 778999996 999


Q ss_pred             EeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 002446          438 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       438 Wdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                      |++..               ..+++++ ||++ -|++|+..+++..+++++.|+|++||+..
T Consensus       205 w~~~g---------------e~l~~~~-ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  205 WDLDG---------------EVLLEMH-GHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             EeccC---------------ceeeeee-ccce-EEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            99943               3555653 6654 49999999999999999999999999987

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.14  E-value=2.9e-08  Score=110.09  Aligned_cols=103  Identities=10%  Similarity=0.142  Sum_probs=67.3

Q ss_pred             CCEEEEEECCC--C--ceEEEeccCC------CCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 002446          389 VGMVIVRDIVS--K--NVIAQFRAHK------SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV  458 (921)
Q Consensus       389 ~G~V~IwDl~s--~--~~l~~~~aH~------~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~  458 (921)
                      ++.|.+||+..  +  +.+..+..+.      .....+.|+|||++|+++......|.+|++...  +        ....
T Consensus       196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~--~--------~~~~  265 (330)
T PRK11028        196 NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED--G--------SVLS  265 (330)
T ss_pred             CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC--C--------CeEE
Confidence            57888888863  2  2333443221      123469999999999998765556999999753  0        0111


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeC-CCcEEEEecCCCCCc
Q 002446          459 HLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGS  504 (921)
Q Consensus       459 ~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~-DgTVhVWdi~~~g~~  504 (921)
                      .+.....|.   ....++|+|||++|+++.. +++|.||+++...+.
T Consensus       266 ~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~  309 (330)
T PRK11028        266 FEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGL  309 (330)
T ss_pred             EeEEEeccc---cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCc
Confidence            122222221   2457899999999998876 899999999754443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=7.1e-10  Score=124.52  Aligned_cols=111  Identities=17%  Similarity=0.194  Sum_probs=86.0

Q ss_pred             CCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          388 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      -.|.+++|.+.+|..+..+.+|-.+|+||.|+-||.+|+|||.||. |.+|++..-....     .......++.+. +|
T Consensus       101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~-V~vW~l~~lv~a~-----~~~~~~p~~~f~-~H  173 (476)
T KOG0646|consen  101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGA-VLVWLLTDLVSAD-----NDHSVKPLHIFS-DH  173 (476)
T ss_pred             ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCcc-EEEEEEEeecccc-----cCCCccceeeec-cC
Confidence            4588999999999999999999999999999999999999999997 8999986531110     111233445553 44


Q ss_pred             ccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCCCCcee
Q 002446          468 TNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVN  506 (921)
Q Consensus       468 t~a~I~sIaFSP--Dg~~LAsgS~DgTVhVWdi~~~g~~~~  506 (921)
                      +- .|+|+...+  -..+|+++|.|.|+++||++.+.-..+
T Consensus       174 tl-sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt  213 (476)
T KOG0646|consen  174 TL-SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT  213 (476)
T ss_pred             cc-eeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE
Confidence            43 499888765  467899999999999999988643333

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.12  E-value=5.7e-11  Score=138.33  Aligned_cols=116  Identities=16%  Similarity=0.316  Sum_probs=97.7

Q ss_pred             ccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR  462 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~  462 (921)
                      ++.+..+|+|++||++..+.+.+|-+|..+|..|.|+|-|.+.|.+|.|+. +++||+...              .+.+.
T Consensus        85 laagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd-~~iwD~Rk~--------------Gc~~~  149 (825)
T KOG0267|consen   85 LAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTD-LKIWDIRKK--------------GCSHT  149 (825)
T ss_pred             hcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccc-ceehhhhcc--------------Cceee
Confidence            445677899999999999999999999999999999999999999999965 999999843              12333


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          463 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       463 l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      + +| +...|..+.|+|||+|++.+++|.+++|||+..+.-...|.+|...+.
T Consensus       150 ~-~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~  200 (825)
T KOG0267|consen  150 Y-KS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQ  200 (825)
T ss_pred             e-cC-CcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccc
Confidence            3 45 445599999999999999999999999999987766677887766544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.11  E-value=2.1e-07  Score=99.10  Aligned_cols=254  Identities=18%  Similarity=0.311  Sum_probs=164.5

Q ss_pred             CCCCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCC-CeEEeeeeecCCEEEEEEecCCCCCccccCccccCC
Q 002446           85 ESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVR  163 (921)
Q Consensus        85 ~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~-~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~r  163 (921)
                      ..+.+.|.-+.|+.   .+   ..++..+.++.+.+|+..... ....+...+...+..+... .+..           .
T Consensus        62 ~~~~~~i~~~~~~~---~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~  123 (466)
T COG2319          62 RGHEDSITSIAFSP---DG---ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDG-----------N  123 (466)
T ss_pred             eeccceEEEEEECC---CC---cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCc-----------c
Confidence            46778888888887   44   244555568889999998743 2222222222244444432 2110           0


Q ss_pred             CEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCC-CcEEEEEeC-CCCEEEEEEc--CCEEE
Q 002446          164 PLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRS-QSYVHMLKF-RSPIYSVRCS--SRVVA  239 (921)
Q Consensus       164 PLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~T-g~~V~tL~f-~s~V~sV~~S--~riLA  239 (921)
                      .+++.+..                                .++++++||..+ ...+..+.. ...|..+.++  .+.++
T Consensus       124 ~~~~~~~~--------------------------------~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  171 (466)
T COG2319         124 SILLASSS--------------------------------LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA  171 (466)
T ss_pred             eEEeccCC--------------------------------CCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEE
Confidence            12221111                                126799999998 677776665 5788889996  35566


Q ss_pred             EEe--CCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccccccccc
Q 002446          240 ICQ--AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSG  317 (921)
Q Consensus       240 Va~--d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~  317 (921)
                      ++.  ++.+++||+.+...+.++..+..               .+    ..+++..             .          
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~v----~~~~~~~-------------~----------  209 (466)
T COG2319         172 SGSSLDGTIKLWDLRTGKPLSTLAGHTD---------------PV----SSLAFSP-------------D----------  209 (466)
T ss_pred             ecCCCCCceEEEEcCCCceEEeeccCCC---------------ce----EEEEEcC-------------C----------
Confidence            643  89999999998766666654311               01    1122220             0          


Q ss_pred             ccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEEC
Q 002446          318 FASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDI  397 (921)
Q Consensus       318 ~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl  397 (921)
                          +..                                                         .+++...++.|++||.
T Consensus       210 ----~~~---------------------------------------------------------~~~~~~~d~~i~~wd~  228 (466)
T COG2319         210 ----GGL---------------------------------------------------------LIASGSSDGTIRLWDL  228 (466)
T ss_pred             ----cce---------------------------------------------------------EEEEecCCCcEEEEEC
Confidence                000                                                         0011245688999999


Q ss_pred             CCCceEE-EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEE
Q 002446          398 VSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS  476 (921)
Q Consensus       398 ~s~~~l~-~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIa  476 (921)
                      ..+..+. .+..|...+ ...|+|++.++++++.|+. +++|++...             ...+..+ .++ ...|.++.
T Consensus       229 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~-------------~~~~~~~-~~~-~~~v~~~~  291 (466)
T COG2319         229 STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSS-------------SSLLRTL-SGH-SSSVLSVA  291 (466)
T ss_pred             CCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCC-------------CcEEEEE-ecC-CccEEEEE
Confidence            9888888 799999886 4489999999999999987 999999865             1122333 333 34599999


Q ss_pred             EccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 002446          477 FSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ  508 (921)
Q Consensus       477 FSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~  508 (921)
                      |+|++..+++++.|+++++|++..........
T Consensus       292 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  323 (466)
T COG2319         292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLT  323 (466)
T ss_pred             ECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence            99999999999999999999887765444443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=3.1e-08  Score=102.97  Aligned_cols=100  Identities=20%  Similarity=0.342  Sum_probs=83.7

Q ss_pred             ccccCCCCEEEEEECCCCceEEEec--cC-----CCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCC
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFR--AH-----KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT  455 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~--aH-----~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~  455 (921)
                      ++++..+.+|+.||+.-..++.++.  -|     .+.|++++.+|.|++||++-.|.. ..+||+.-+            
T Consensus       197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lydirg~------------  263 (350)
T KOG0641|consen  197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYDIRGG------------  263 (350)
T ss_pred             EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEEeeCC------------
Confidence            3456778899999999888887775  22     368999999999999999999975 799999875            


Q ss_pred             ceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 002446          456 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       456 ~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                        +.+.+++.  +.+.|.|+-|||-..|+.++|-|..|++=|+.
T Consensus       264 --r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  264 --RMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             --ceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence              45555542  45779999999999999999999999999885

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.10  E-value=9.7e-11  Score=131.13  Aligned_cols=209  Identities=16%  Similarity=0.206  Sum_probs=136.7

Q ss_pred             cEEEEEECCCCcEEEEEeCCCCEEEEEE--cCCEEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCcccccee
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRC--SSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA  283 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s~V~sV~~--S~riLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piA  283 (921)
                      +.|--+|..|+++..+|.....|++|.|  +.+++||++.+.++||| ..+..+++|..+..+.-        +.+=|.-
T Consensus       151 GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtElHClk~~~~v~r--------LeFLPyH  221 (545)
T KOG1272|consen  151 GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTELHCLKRHIRVAR--------LEFLPYH  221 (545)
T ss_pred             cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcEEeehhhcCchhh--------hcccchh
Confidence            5688899999999999999999999999  68999999999999999 45666888876532110        1111100


Q ss_pred             ecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCc
Q 002446          284 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ  363 (921)
Q Consensus       284 lgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~  363 (921)
                         =.||.+      +..|.+.-+.          -|.|++|+...+..           |+..                
T Consensus       222 ---fLL~~~------~~~G~L~Y~D----------VS~GklVa~~~t~~-----------G~~~----------------  255 (545)
T KOG1272|consen  222 ---FLLVAA------SEAGFLKYQD----------VSTGKLVASIRTGA-----------GRTD----------------  255 (545)
T ss_pred             ---heeeec------ccCCceEEEe----------echhhhhHHHHccC-----------Cccc----------------
Confidence               011111      1122221111          12344443322211           1110                


Q ss_pred             CCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCC
Q 002446          364 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       364 ~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g  443 (921)
                        .-.-+|   .|+++    -.+...|+|.+|...+.+++..+..|.++|++|+++|+|+|+||++.|.. ++|||+...
T Consensus       256 --vm~qNP---~NaVi----h~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~  325 (545)
T KOG1272|consen  256 --VMKQNP---YNAVI----HLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNF  325 (545)
T ss_pred             --hhhcCC---ccceE----EEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccc
Confidence              000011   12222    23566799999999999999999999999999999999999999999965 999999874


Q ss_pred             CCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 002446          444 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       444 ~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi  498 (921)
                                    .++.+++.   ......++||.-|- ||.+ ...-|+||.=
T Consensus       326 --------------~ql~t~~t---p~~a~~ls~Sqkgl-LA~~-~G~~v~iw~d  361 (545)
T KOG1272|consen  326 --------------YQLHTYRT---PHPASNLSLSQKGL-LALS-YGDHVQIWKD  361 (545)
T ss_pred             --------------cccceeec---CCCccccccccccc-eeee-cCCeeeeehh
Confidence                          34455432   22367899997774 3333 3346899963

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.09  E-value=1.7e-09  Score=116.50  Aligned_cols=110  Identities=15%  Similarity=0.250  Sum_probs=89.4

Q ss_pred             ccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR  462 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~  462 (921)
                      .+++.-|.+..+||++++.++..+.+|.+..+.++-.|.-++++|+|.|-| +|+||..+.             ...+..
T Consensus       287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT-FRLWDFRea-------------I~sV~V  352 (481)
T KOG0300|consen  287 MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT-FRLWDFREA-------------IQSVAV  352 (481)
T ss_pred             eeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce-eEeccchhh-------------cceeee
Confidence            345677889999999999999999999999999999999999999999965 999999864             222333


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc-eeecC
Q 002446          463 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS-VNFQP  509 (921)
Q Consensus       463 l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~-~~l~~  509 (921)
                       ..||+. .|+++.|.-|.+ +++||+|.||+|||+..-..+ .+++.
T Consensus       353 -FQGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt  397 (481)
T KOG0300|consen  353 -FQGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT  397 (481)
T ss_pred             -eccccc-ceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec
Confidence             357765 499999998865 779999999999999764332 34443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=1e-08  Score=119.33  Aligned_cols=191  Identities=19%  Similarity=0.279  Sum_probs=130.9

Q ss_pred             cEEEEEECCCCcEE-EEEeC--CCCEEEEEEc--CCEEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCcccc
Q 002446          206 TVVHFYSLRSQSYV-HMLKF--RSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG  280 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V-~tL~f--~s~V~sV~~S--~riLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~  280 (921)
                      +.|.||+++.+=+. ..|..  .+.|.++++.  .|++.+.+++.|.-||+.+++.++.+.....            ...
T Consensus        47 g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg------------~IW  114 (691)
T KOG2048|consen   47 GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG------------AIW  114 (691)
T ss_pred             CcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCc------------cee
Confidence            67999999987433 33443  4689999996  5888889999999999999998877653210            111


Q ss_pred             ceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccC
Q 002446          281 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP  360 (921)
Q Consensus       281 piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p  360 (921)
                      .||+       .             |.              +           ..                         
T Consensus       115 siai-------~-------------p~--------------~-----------~~-------------------------  124 (691)
T KOG2048|consen  115 SIAI-------N-------------PE--------------N-----------TI-------------------------  124 (691)
T ss_pred             EEEe-------C-------------Cc--------------c-----------ce-------------------------
Confidence            2221       1             11              0           00                         


Q ss_pred             CCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceE--EEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEE
Q 002446          361 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI--AQFRAHKSPISALCFDPSGILLVTASVQGHNINIF  438 (921)
Q Consensus       361 ~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l--~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIW  438 (921)
                                            ++-++.+|.+..++...+...  ..|...++.|.+|+|+|+|+.||+|+.||. |++|
T Consensus       125 ----------------------l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~-Iriw  181 (691)
T KOG2048|consen  125 ----------------------LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV-IRIW  181 (691)
T ss_pred             ----------------------EEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce-EEEE
Confidence                                  011245565555666555443  234456789999999999999999999995 9999


Q ss_pred             eCCCCCCCCCCccCCCCceeE-----EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCC
Q 002446          439 KIIPGILGTSSACDAGTSYVH-----LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN  513 (921)
Q Consensus       439 di~~g~~~~~s~~~~~~~~~~-----l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~  513 (921)
                      |+..+            ...+     +-++.++ ...-|+++.|=.|+. ||+|.+.|||.+||-..+.....+..|..+
T Consensus       182 d~~~~------------~t~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiqS~~~h~ad  247 (691)
T KOG2048|consen  182 DVKSG------------QTLHIITMQLDRLSKR-EPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQSHSCHDAD  247 (691)
T ss_pred             EcCCC------------ceEEEeeecccccccC-CceEEEEEEEeecCc-EEEecCCceEEEEcccCcchhhhhhhhhcc
Confidence            99986            1122     2233332 223489999987765 789999999999999887666677777665


Q ss_pred             cc
Q 002446          514 FT  515 (921)
Q Consensus       514 ~~  515 (921)
                      +.
T Consensus       248 Vl  249 (691)
T KOG2048|consen  248 VL  249 (691)
T ss_pred             ee
Confidence            44

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.07  E-value=1e-07  Score=105.77  Aligned_cols=112  Identities=8%  Similarity=0.134  Sum_probs=72.3

Q ss_pred             CCCEEEEEECCCCceEE-------EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 002446          388 NVGMVIVRDIVSKNVIA-------QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL  460 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~l~-------~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l  460 (921)
                      .++.|.|||+.+...+.       .+... .....++|+|||++|+++......|.+|++... .         +....+
T Consensus       146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~---------~~~~~~  214 (330)
T PRK11028        146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-H---------GEIECV  214 (330)
T ss_pred             CCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-C---------CCEEEE
Confidence            35789999997643221       12222 335679999999999988874455999999752 0         012223


Q ss_pred             EEEecc---c-ccccEEEEEEccCCCEEEEEeC-CCcEEEEecCCCCCceeecCC
Q 002446          461 YRLQRG---L-TNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSVNFQPT  510 (921)
Q Consensus       461 ~~l~RG---~-t~a~I~sIaFSPDg~~LAsgS~-DgTVhVWdi~~~g~~~~l~~H  510 (921)
                      .++...   . .......|.|+||+++|+++.. +++|.||++++.++...+..|
T Consensus       215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~  269 (330)
T PRK11028        215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH  269 (330)
T ss_pred             EEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE
Confidence            333210   0 0011346999999999999854 789999999887666555554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.05  E-value=8.4e-09  Score=112.04  Aligned_cols=254  Identities=16%  Similarity=0.250  Sum_probs=152.5

Q ss_pred             CeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 002446          107 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT  186 (921)
Q Consensus       107 ~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~  186 (921)
                      +-+.+.||.+-++|.|+.. +.+..-+-.|.+.|..+++.|.              +|-|.++...         |    
T Consensus       106 p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~--------------~~qlvls~Sk---------D----  157 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPD--------------RPQLVLSASK---------D----  157 (385)
T ss_pred             eeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCC--------------CCcEEEEecC---------C----
Confidence            3455556566689999988 5566666678899999988773              4555555421         2    


Q ss_pred             ccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe----CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCcEEEE
Q 002446          187 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK----FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYA  259 (921)
Q Consensus       187 ~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~----f~s~V~sV~~S--~riLAV-a~d~~I~IwDl~T~~~l~t  259 (921)
                                         .+||+|+++++.|+..+.    ++..|.+|.|+  +++|+. ..|.+|.+|++...+-...
T Consensus       158 -------------------~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~  218 (385)
T KOG1034|consen  158 -------------------HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK  218 (385)
T ss_pred             -------------------ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence                               779999999999999985    47899999997  466776 7889999999996543323


Q ss_pred             EecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcce
Q 002446          260 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG  339 (921)
Q Consensus       260 L~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasG  339 (921)
                      |+-. ... .+.     ....|+         +..                 .-.||...+         ++.=+..+..
T Consensus       219 lE~s-~~~-~~~-----~t~~pf---------pt~-----------------~~~fp~fst---------~diHrnyVDC  256 (385)
T KOG1034|consen  219 LELS-ITY-SPN-----KTTRPF---------PTP-----------------KTHFPDFST---------TDIHRNYVDC  256 (385)
T ss_pred             hhhh-ccc-CCC-----CccCcC---------Ccc-----------------ccccccccc---------cccccchHHH
Confidence            3211 000 000     000111         100                 000111000         0000111123


Q ss_pred             eEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECC-C-------------CceEEE
Q 002446          340 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-S-------------KNVIAQ  405 (921)
Q Consensus       340 l~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~-s-------------~~~l~~  405 (921)
                      ++++|+...                                    +...++.|..|-.. -             -..+.+
T Consensus       257 vrw~gd~il------------------------------------SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~  300 (385)
T KOG1034|consen  257 VRWFGDFIL------------------------------------SKSCENAIVCWKPGKLEESIHNVKPPESATTILGE  300 (385)
T ss_pred             HHHHhhhee------------------------------------ecccCceEEEEecchhhhhhhccCCCccceeeeeE
Confidence            344444321                                    12223345555441 0             123445


Q ss_pred             eccCCCCeEEE--EECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCE
Q 002446          406 FRAHKSPISAL--CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW  483 (921)
Q Consensus       406 ~~aH~~pIsaL--aFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~  483 (921)
                      |.-....|.-|  +|+|-+++||.+...|+ +.+||+....+..        ...+.+. .+   .+.|+..+||.||.+
T Consensus       301 ~~~~~c~iWfirf~~d~~~~~la~gnq~g~-v~vwdL~~~ep~~--------~ttl~~s-~~---~~tVRQ~sfS~dgs~  367 (385)
T KOG1034|consen  301 FDYPMCDIWFIRFAFDPWQKMLALGNQSGK-VYVWDLDNNEPPK--------CTTLTHS-KS---GSTVRQTSFSRDGSI  367 (385)
T ss_pred             eccCccceEEEEEeecHHHHHHhhccCCCc-EEEEECCCCCCcc--------CceEEec-cc---cceeeeeeecccCcE
Confidence            55555566665  45667999999999997 8999998752111        1112111 22   345999999999999


Q ss_pred             EEEEeCCCcEEEEec
Q 002446          484 IMISSSRGTSHLFAI  498 (921)
Q Consensus       484 LAsgS~DgTVhVWdi  498 (921)
                      |+...+|+||--||.
T Consensus       368 lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  368 LVLVCDDGTVWRWDR  382 (385)
T ss_pred             EEEEeCCCcEEEEEe
Confidence            999999999988885

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=2.4e-08  Score=115.52  Aligned_cols=79  Identities=16%  Similarity=0.151  Sum_probs=55.9

Q ss_pred             EEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcE
Q 002446          414 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS  493 (921)
Q Consensus       414 saLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTV  493 (921)
                      .+++|+|||++|+.++.++  +.+||+.++            ...   .+..+.   ...+++|||||++|+.++.++.+
T Consensus       336 ~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g------------~~~---~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~  395 (429)
T PRK01742        336 YSAQISADGKTLVMINGDN--VVKQDLTSG------------STE---VLSSTF---LDESPSISPNGIMIIYSSTQGLG  395 (429)
T ss_pred             CCccCCCCCCEEEEEcCCC--EEEEECCCC------------CeE---EecCCC---CCCCceECCCCCEEEEEEcCCCc
Confidence            4578999999999988764  556998775            111   121121   23568899999999999999999


Q ss_pred             EEEecCC--CCCceeecCCCC
Q 002446          494 HLFAINP--LGGSVNFQPTDA  512 (921)
Q Consensus       494 hVWdi~~--~g~~~~l~~H~~  512 (921)
                      .+|.+..  +.....+.+|.+
T Consensus       396 ~~l~~~~~~G~~~~~l~~~~g  416 (429)
T PRK01742        396 KVLQLVSADGRFKARLPGSDG  416 (429)
T ss_pred             eEEEEEECCCCceEEccCCCC
Confidence            9998743  334456666644

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.04  E-value=1.2e-08  Score=114.56  Aligned_cols=98  Identities=16%  Similarity=0.320  Sum_probs=77.9

Q ss_pred             cCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 002446          386 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR  465 (921)
Q Consensus       386 ~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~R  465 (921)
                      .+..|.|.|....++..+.+|+- .+.|+.++|+.||+.|..++.+|. |.+||+...            .+.+.+.-.-
T Consensus       321 ~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~Ge-V~v~nl~~~------------~~~~rf~D~G  386 (514)
T KOG2055|consen  321 AGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGE-VYVWNLRQN------------SCLHRFVDDG  386 (514)
T ss_pred             cccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCce-EEEEecCCc------------ceEEEEeecC
Confidence            34568889988888888888874 367999999999999999999996 899999875            2333333322


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          466 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       466 G~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                      +. .  =+++|.|+++.|||+||..|-|-|||.+.
T Consensus       387 ~v-~--gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  387 SV-H--GTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             cc-c--eeeeeecCCCceEEeccCcceEEEeccch
Confidence            22 1  36889999999999999999999999765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.03  E-value=1.2e-09  Score=120.22  Aligned_cols=106  Identities=18%  Similarity=0.289  Sum_probs=85.2

Q ss_pred             CcccccCCCCEEEEEECCCC---ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce
Q 002446          381 GHFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY  457 (921)
Q Consensus       381 g~~~s~~~~G~V~IwDl~s~---~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~  457 (921)
                      +.|+++..||.|+|||++++   .++ ..++|.+-|+.|.|+..-.+||++++||+ ++|||+.....+           
T Consensus       271 ~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~~-----------  337 (440)
T KOG0302|consen  271 GVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKSG-----------  337 (440)
T ss_pred             ceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcceeeecCCCce-EEEEEhhhccCC-----------
Confidence            45678889999999999987   343 34899999999999999889999999998 899999975211           


Q ss_pred             eEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCC
Q 002446          458 VHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       458 ~~l~~l~RG~t~a~I~sIaFSP-Dg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      ..+..+.+  +.+.|++|.|+| +...||+++.|..|.|||++-.
T Consensus       338 ~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  338 QPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             CcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence            12233332  335699999998 5778899999999999999753

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=3.2e-09  Score=121.97  Aligned_cols=94  Identities=17%  Similarity=0.237  Sum_probs=77.1

Q ss_pred             CCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          389 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       389 ~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      ...|+|||+....++..+..-..-|+.|+.+|.|.-|+.++.|++ +..||+.-.              ...|+.-|-|.
T Consensus       586 q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k-~~WfDldls--------------skPyk~lr~H~  650 (733)
T KOG0650|consen  586 QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK-MCWFDLDLS--------------SKPYKTLRLHE  650 (733)
T ss_pred             ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe-eEEEEcccC--------------cchhHHhhhhh
Confidence            357999999998888888877788999999999999999999987 789998864              11233224444


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 002446          469 NAVIQDISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi  498 (921)
                      . .|++++|.+-=..||+||.|||++||--
T Consensus       651 ~-avr~Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  651 K-AVRSVAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             h-hhhhhhhccccceeeeecCCCcEEEEee
Confidence            3 4999999999999999999999999953

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.01  E-value=2.1e-07  Score=105.64  Aligned_cols=101  Identities=17%  Similarity=0.288  Sum_probs=78.2

Q ss_pred             cccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY  461 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~  461 (921)
                      +++-+...|.-.|.|.++...+..-.. +.++++|+|+|||.+||.||.|+. |.||.+...             .....
T Consensus       420 ~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~-------------g~~y~  484 (626)
T KOG2106|consen  420 VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSAN-------------GRKYS  484 (626)
T ss_pred             eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe-EEEEEECCC-------------CcEEE
Confidence            344455678889999999555444344 899999999999999999999987 999999864             12222


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 002446          462 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       462 ~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi  498 (921)
                      ++ +-.+.+.|+.+.||+|++||.+-|.|-.+-.|+-
T Consensus       485 r~-~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  485 RV-GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             Ee-eeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence            22 1222267999999999999999999999999943

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.99  E-value=2.2e-08  Score=112.59  Aligned_cols=109  Identities=18%  Similarity=0.169  Sum_probs=74.5

Q ss_pred             cccCCCCEEEEEECCCCc----eEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 002446          384 PDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH  459 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~~----~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~  459 (921)
                      ++++.+++++|||+....    ++-..-.|..+|.+..|||+|-.|+|.+.|.+ |||||..--  .  ....+.....|
T Consensus       339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~--s--a~~~p~~~I~H  413 (498)
T KOG4328|consen  339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCI--S--AKDEPLGTIPH  413 (498)
T ss_pred             eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccc--c--ccCCccceeec
Confidence            345668899999997643    33445589999999999998777999999976 999998411  0  00111112222


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          460 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       460 l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                      -...-|-.   .+...+|.||..+|++|-.-.-|-|||-+-
T Consensus       414 n~~t~Rwl---T~fKA~W~P~~~li~vg~~~r~IDv~~~~~  451 (498)
T KOG4328|consen  414 NNRTGRWL---TPFKAAWDPDYNLIVVGRYPRPIDVFDGNG  451 (498)
T ss_pred             cCcccccc---cchhheeCCCccEEEEeccCcceeEEcCCC
Confidence            11111111   145678999999999999999999988543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=1.1e-08  Score=115.16  Aligned_cols=121  Identities=17%  Similarity=0.204  Sum_probs=87.2

Q ss_pred             ccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCcc----CCCCcee
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC----DAGTSYV  458 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~----~~~~~~~  458 (921)
                      +.+...|.++++||+..+.++.++. ...+|.+++.+|-++.+..|..+|. |-+.++..- .+. +.+    +......
T Consensus       191 l~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~-~~~-~~~v~~k~~~~~~t  266 (476)
T KOG0646|consen  191 LYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKL-SGQ-SAGVNQKGRHEENT  266 (476)
T ss_pred             EEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcce-EEeeehhcC-Ccc-cccccccccccccc
Confidence            3456778999999999999887775 3468999999999999999999996 666666542 110 000    0000111


Q ss_pred             EEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 002446          459 HLYRLQRGLTN-AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ  508 (921)
Q Consensus       459 ~l~~l~RG~t~-a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~  508 (921)
                      .+..+ -|+.. ..|+|++.|-||..|++|+.||+|.|||+.......++.
T Consensus       267 ~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  267 QINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             eeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            22233 35444 359999999999999999999999999998876655554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.98  E-value=5.5e-09  Score=110.74  Aligned_cols=71  Identities=21%  Similarity=0.314  Sum_probs=58.5

Q ss_pred             CCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 002446          411 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR  490 (921)
Q Consensus       411 ~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~D  490 (921)
                      -.|..+..-||++.||||+.||+ ||||...+.              ..+..|.  .+.+-|+++||+||...+|.+|.|
T Consensus       252 pGv~gvrIRpD~KIlATAGWD~R-iRVyswrtl--------------~pLAVLk--yHsagvn~vAfspd~~lmAaaskD  314 (323)
T KOG0322|consen  252 PGVSGVRIRPDGKILATAGWDHR-IRVYSWRTL--------------NPLAVLK--YHSAGVNAVAFSPDCELMAAASKD  314 (323)
T ss_pred             CCccceEEccCCcEEeecccCCc-EEEEEeccC--------------Cchhhhh--hhhcceeEEEeCCCCchhhhccCC
Confidence            35777889999999999999998 999998875              2222332  123559999999999999999999


Q ss_pred             CcEEEEec
Q 002446          491 GTSHLFAI  498 (921)
Q Consensus       491 gTVhVWdi  498 (921)
                      ++|-+|++
T Consensus       315 ~rISLWkL  322 (323)
T KOG0322|consen  315 ARISLWKL  322 (323)
T ss_pred             ceEEeeec
Confidence            99999997

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.98  E-value=1.8e-09  Score=119.76  Aligned_cols=130  Identities=15%  Similarity=0.243  Sum_probs=98.7

Q ss_pred             ccccCCCCEEEEEECCCC---------ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCC--CCCCcc
Q 002446          383 FPDADNVGMVIVRDIVSK---------NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL--GTSSAC  451 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~---------~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~--~~~s~~  451 (921)
                      +++++.|..|+||-+...         .-+..|..|..+|+++.|+|+|.+||+|+++|. |.+|....-..  ... ..
T Consensus        29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~-v~lWk~~~~~~~~~d~-e~  106 (434)
T KOG1009|consen   29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE-VFLWKQGDVRIFDADT-EA  106 (434)
T ss_pred             eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce-EEEEEecCcCCccccc-hh
Confidence            456677889999987532         235677899999999999999999999999997 89997662100  000 01


Q ss_pred             CCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          452 DAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       452 ~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      +.....+.+++.-||| ...|++++|+||+.++++++.|.++++||++.+.-...+..|..-+.
T Consensus       107 ~~~ke~w~v~k~lr~h-~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq  169 (434)
T KOG1009|consen  107 DLNKEKWVVKKVLRGH-RDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ  169 (434)
T ss_pred             hhCccceEEEEEeccc-ccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence            1112345566666775 35699999999999999999999999999999877777888866666

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=7.8e-09  Score=112.76  Aligned_cols=104  Identities=19%  Similarity=0.288  Sum_probs=77.4

Q ss_pred             CCEEEEEECCCCce-EEEe-ccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 002446          389 VGMVIVRDIVSKNV-IAQF-RAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR  465 (921)
Q Consensus       389 ~G~V~IwDl~s~~~-l~~~-~aH~~pIsaLaFSP-dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~R  465 (921)
                      +-.|.+||++..+. +..+ ..|..-|++|+|.| |-.+|+|||.||- |+|||+......        ....  ..+. 
T Consensus       142 ~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d~Ee--------DaL~--~viN-  209 (376)
T KOG1188|consen  142 DASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKDNEE--------DALL--HVIN-  209 (376)
T ss_pred             ceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCCcch--------hhHH--Hhhc-
Confidence            45699999998654 5544 59999999999999 4679999999995 999999865110        1112  2222 


Q ss_pred             ccccccEEEEEEccCC-CEEEEEeCCCcEEEEecCCCCCcee
Q 002446          466 GLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLGGSVN  506 (921)
Q Consensus       466 G~t~a~I~sIaFSPDg-~~LAsgS~DgTVhVWdi~~~g~~~~  506 (921)
                        +.+.|-+|.|.-++ +.|.+-+...|..+|+++...+...
T Consensus       210 --~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~  249 (376)
T KOG1188|consen  210 --HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW  249 (376)
T ss_pred             --ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence              22349999998888 4578888899999999998764443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.97  E-value=9.9e-10  Score=129.07  Aligned_cols=213  Identities=15%  Similarity=0.144  Sum_probs=135.5

Q ss_pred             ccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY  461 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSP-dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~  461 (921)
                      ++++..||+|++||+...+...++.+....|..|+|+| .+..+|++.+.|. +++||+...             .++..
T Consensus       149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~-lqlWDlRqp-------------~r~~~  214 (839)
T KOG0269|consen  149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY-LQLWDLRQP-------------DRCEK  214 (839)
T ss_pred             EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce-EEEeeccCc-------------hhHHH
Confidence            45788999999999999999999999999999999999 5889999999886 899999864             11212


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcccccCCcCCccccCCCCCCCCCCCCcc
Q 002446          462 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQS  541 (921)
Q Consensus       462 ~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~~~~~~~~~~~~r~~~~s~l~~~~~~~  541 (921)
                      +|  .-+...|.|+.|+|+..|||+|+.|++|+||++...........|+       ..|++. ++|-|-.      +.+
T Consensus       215 k~--~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-------iapv~r-VkWRP~~------~~h  278 (839)
T KOG0269|consen  215 KL--TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-------IAPVGR-VKWRPAR------SYH  278 (839)
T ss_pred             Hh--hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-------cceeee-eeeccCc------cch
Confidence            22  2233469999999999999999999999999998643333333332       122322 3444332      223


Q ss_pred             cccCCCceeee--eeeEEecCCCCCCccccchhhhccCCccCCCcceeeeeeccCC-----CccccccCCcccccccEEE
Q 002446          542 LCASGPPVTLS--VVSRIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHNCKG-----NSETYAAGSSLKIKNHLLV  614 (921)
Q Consensus       542 l~~~~~pv~ls--~v~rI~~~~~~w~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~v  614 (921)
                      |+ .-+-|.=.  -|=-||++=                        |+..--.|..     --|   ++   ..-+-||-
T Consensus       279 LA-tcsmv~dtsV~VWDvrRPY------------------------IP~~t~~eH~~~vt~i~W---~~---~d~~~l~s  327 (839)
T KOG0269|consen  279 LA-TCSMVVDTSVHVWDVRRPY------------------------IPYATFLEHTDSVTGIAW---DS---GDRINLWS  327 (839)
T ss_pred             hh-hhhccccceEEEEeecccc------------------------ccceeeeccCccccceec---cC---CCceeeEe
Confidence            32 11111000  011222221                        2211112211     113   11   25567888


Q ss_pred             EccCCcEEEEeeecccCCCcccCCCCCCCC-CCCCCCCCceEEEeeee
Q 002446          615 FSPSGCMIQYALRISTGLDVTMGVPGLGSA-YDSVPEDDPRLVVEAIQ  661 (921)
Q Consensus       615 ~sp~G~liqy~L~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vep~~  661 (921)
                      .+-+|.+.|+..+-...+-..+     +.. ..-.++-++-+.|+|+.
T Consensus       328 ~sKD~tv~qh~~knat~pid~a-----~~~~~s~g~~g~l~fa~n~~~  370 (839)
T KOG0269|consen  328 CSKDGTVLQHLFKNATTPIDLA-----NNGGLSVGQFGDLYFAVNPEL  370 (839)
T ss_pred             ecCccHHHHhhhhcccChhhhc-----CcccccccccCceeEEecccc
Confidence            9999999999887654433322     222 23348888999999876

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.92  E-value=6.1e-08  Score=114.84  Aligned_cols=102  Identities=10%  Similarity=0.257  Sum_probs=81.1

Q ss_pred             ccccCCCCEEEEEECC-CCceEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 002446          383 FPDADNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL  460 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~-s~~~l~~~~aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l  460 (921)
                      |.+++ |.+|+||.-. ...++..+..+...|++++|||- -..+|+++.||+ |.|||+.....+.            +
T Consensus       414 fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWDLl~~~~~P------------v  479 (555)
T KOG1587|consen  414 FLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWDLLQDDEEP------------V  479 (555)
T ss_pred             eeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhhhhccccCC------------c
Confidence            33433 8899999998 77888899999999999999996 578999999997 9999998752211            1


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          461 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       461 ~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                      .+...+  ......+.|+++|+.||+|...|++|+|++.+
T Consensus       480 ~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  480 LSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            222222  23477888999999999999999999999964

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.91  E-value=5e-09  Score=120.53  Aligned_cols=99  Identities=22%  Similarity=0.304  Sum_probs=81.9

Q ss_pred             cCCCCEEEEEECCCC-------ceEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce
Q 002446          386 ADNVGMVIVRDIVSK-------NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY  457 (921)
Q Consensus       386 ~~~~G~V~IwDl~s~-------~~l~~~~aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~  457 (921)
                      +..+|.|+||-+..+       ++...+.+|...|+.|.|.|- ...||+++.|-| |+|||+...              
T Consensus       646 a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~--------------  710 (1012)
T KOG1445|consen  646 ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANA--------------  710 (1012)
T ss_pred             cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhh--------------
Confidence            467899999998753       466788999999999999995 668999999987 999999975              


Q ss_pred             eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          458 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       458 ~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      ....+| -||+. .|.++||||||+.+|+.+.||+++||.-...
T Consensus       711 ~~~~~l-~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~  752 (1012)
T KOG1445|consen  711 KLYSRL-VGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYEPRSR  752 (1012)
T ss_pred             hhhhee-ccCcC-ceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence            111233 46654 4999999999999999999999999986653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=1.4e-06  Score=100.98  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=65.2

Q ss_pred             EEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       391 ~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DG--t~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      .|.++|+.+++. ..+..+.....+.+|+|||++|+.++.++  ..|.+||+.++            ..   ..+..+. 
T Consensus       312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g------------~~---~~Lt~~~-  374 (429)
T PRK03629        312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG------------GV---QVLTDTF-  374 (429)
T ss_pred             eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC------------Ce---EEeCCCC-
Confidence            355567766644 33443444566789999999998876543  24777888765            11   2232221 


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCc---EEEEecCCCCCceeecCCCCC
Q 002446          469 NAVIQDISFSDDSNWIMISSSRGT---SHLFAINPLGGSVNFQPTDAN  513 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~DgT---VhVWdi~~~g~~~~l~~H~~~  513 (921)
                        ...+.+|||||++|+.++.++.   +.++++ +++....+.+|.+.
T Consensus       375 --~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~  419 (429)
T PRK03629        375 --LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQ  419 (429)
T ss_pred             --CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCC
Confidence              2346889999999999998876   455555 33344566666443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.86  E-value=9e-08  Score=102.73  Aligned_cols=117  Identities=16%  Similarity=0.217  Sum_probs=76.5

Q ss_pred             ccccCCCCEEEEEECCC-CceEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCCCCCC-------CCCccCC
Q 002446          383 FPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILG-------TSSACDA  453 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s-~~~l~~~~aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~g~~~-------~~s~~~~  453 (921)
                      +++++.+|.|+|||... +.++..+.+|..-|.++.|+|. .++|.|++.|.. +.+|....-...       ..+...-
T Consensus       230 lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca~svSSE~qi~~~~dese~e~  308 (370)
T KOG1007|consen  230 LVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCASSVSSEQQIEFEDDESESED  308 (370)
T ss_pred             EEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEEeccccccccccccccccccCcc
Confidence            34567889999999985 5688999999999999999996 778999999975 888865442100       0000000


Q ss_pred             CCceeEEEEEecc------cccccEEEEEEccCCCE-EEEEeCCCcEEEEecCC
Q 002446          454 GTSYVHLYRLQRG------LTNAVIQDISFSDDSNW-IMISSSRGTSHLFAINP  500 (921)
Q Consensus       454 ~~~~~~l~~l~RG------~t~a~I~sIaFSPDg~~-LAsgS~DgTVhVWdi~~  500 (921)
                      ........-|.-|      .+.-.|++++||.-.-| ||+=|-||.+.|=.+.+
T Consensus       309 ~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  309 EDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             hhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            0000110111111      12224999999765555 67889999998876654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=1.3e-08  Score=106.98  Aligned_cols=114  Identities=18%  Similarity=0.338  Sum_probs=89.7

Q ss_pred             ccccCCCCEEEEEECCCC---ceEEEeccCCCCeEEEEECC--CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce
Q 002446          383 FPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY  457 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~---~~l~~~~aH~~pIsaLaFSP--dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~  457 (921)
                      ++++..|++|+|++..+.   +++.+|.+|.+||..++|-.  -|++||+||.||+ |.||.-..+ .+.          
T Consensus        26 lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk-VIiWke~~g-~w~----------   93 (299)
T KOG1332|consen   26 LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK-VIIWKEENG-RWT----------   93 (299)
T ss_pred             eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-EEEEecCCC-chh----------
Confidence            456778999999999864   57899999999999999988  8999999999998 789987765 211          


Q ss_pred             eEEEEEecccccccEEEEEEccC--CCEEEEEeCCCcEEEEecCCCCCce---eecCCC
Q 002446          458 VHLYRLQRGLTNAVIQDISFSDD--SNWIMISSSRGTSHLFAINPLGGSV---NFQPTD  511 (921)
Q Consensus       458 ~~l~~l~RG~t~a~I~sIaFSPD--g~~LAsgS~DgTVhVWdi~~~g~~~---~l~~H~  511 (921)
                       +.++  +..+.+.|++|+|.|.  |-.||++|+||+|.|+++...++-.   ..+.|.
T Consensus        94 -k~~e--~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~  149 (299)
T KOG1332|consen   94 -KAYE--HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE  149 (299)
T ss_pred             -hhhh--hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc
Confidence             2222  2234566999999885  6789999999999999998875432   235663

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.85  E-value=7.6e-09  Score=112.37  Aligned_cols=100  Identities=22%  Similarity=0.369  Sum_probs=85.1

Q ss_pred             ccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          385 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       385 s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      .++.-|.|+|.|+.++++...+.+|..+|+.|+|.|+ -++|++||.|. .||+|++.+.              .++..+
T Consensus       110 ~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~-svRlwnI~~~--------------~Cv~Vf  174 (385)
T KOG1034|consen  110 AGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDH-SVRLWNIQTD--------------VCVAVF  174 (385)
T ss_pred             eecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCc-eEEEEeccCC--------------eEEEEe
Confidence            3456799999999999999999999999999999997 47999999995 5999999986              344333


Q ss_pred             --ecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          464 --QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       464 --~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                        ..||. ..|.++.|++||.+||++++|.++++|+++.
T Consensus       175 GG~egHr-deVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  175 GGVEGHR-DEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             ccccccc-CcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence              22332 2499999999999999999999999999984

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.81  E-value=1.7e-06  Score=95.75  Aligned_cols=198  Identities=19%  Similarity=0.284  Sum_probs=130.2

Q ss_pred             EEEEECCCCcEEEEEeCC----CCEEEEEEcC--CEEEE---EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCcc
Q 002446          208 VHFYSLRSQSYVHMLKFR----SPIYSVRCSS--RVVAI---CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG  278 (921)
Q Consensus       208 VrIWDL~Tg~~V~tL~f~----s~V~sV~~S~--riLAV---a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~  278 (921)
                      |.|||+++-+.+++|.-.    ..+.++..|.  -+||.   ...+.|++||+.+++..-++..|..             
T Consensus       108 IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~-------------  174 (391)
T KOG2110|consen  108 IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG-------------  174 (391)
T ss_pred             EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC-------------
Confidence            899999999999999752    3466666664  48887   2357999999999999888887742             


Q ss_pred             ccceeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccc
Q 002446          279 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF  358 (921)
Q Consensus       279 ~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~  358 (921)
                        ++|    -|||..                           .|.++                                 
T Consensus       175 --~lA----alafs~---------------------------~G~ll---------------------------------  188 (391)
T KOG2110|consen  175 --PLA----ALAFSP---------------------------DGTLL---------------------------------  188 (391)
T ss_pred             --cee----EEEECC---------------------------CCCEE---------------------------------
Confidence              343    255541                           12221                                 


Q ss_pred             cCCCcCCcccccCCCCCCCcccCcccccCCCC-EEEEEECCCCceEEEeccCC--CCeEEEEECCCCCEEEEEecCCCEE
Q 002446          359 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVG-MVIVRDIVSKNVIAQFRAHK--SPISALCFDPSGILLVTASVQGHNI  435 (921)
Q Consensus       359 ~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G-~V~IwDl~s~~~l~~~~aH~--~pIsaLaFSPdGtlLATaS~DGt~I  435 (921)
                                               +++...| .|||+++.+|+.+.+|+.-.  ..|.+|+|+||+++|+..|..+| |
T Consensus       189 -------------------------ATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-V  242 (391)
T KOG2110|consen  189 -------------------------ATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-V  242 (391)
T ss_pred             -------------------------EEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-E
Confidence                                     1112223 58999999999999999554  35889999999999999999988 9


Q ss_pred             EEEeCCCCCC---C-CCCccCCC------------CceeEEEEEecccccccE------EEEEEc--cCCCEEEEEeCCC
Q 002446          436 NIFKIIPGIL---G-TSSACDAG------------TSYVHLYRLQRGLTNAVI------QDISFS--DDSNWIMISSSRG  491 (921)
Q Consensus       436 rIWdi~~g~~---~-~~s~~~~~------------~~~~~l~~l~RG~t~a~I------~sIaFS--PDg~~LAsgS~Dg  491 (921)
                      +||.+.....   . +....++.            ..+..++...|-+-.++|      ..++|+  ++..++.+++.||
T Consensus       243 HiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG  322 (391)
T KOG2110|consen  243 HIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDG  322 (391)
T ss_pred             EEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCC
Confidence            9999876421   0 00001110            011111122222211111      244555  5889999999999


Q ss_pred             cEEEEecCCC-CCce-eecCC
Q 002446          492 TSHLFAINPL-GGSV-NFQPT  510 (921)
Q Consensus       492 TVhVWdi~~~-g~~~-~l~~H  510 (921)
                      .+..|.+.+. +|.. .+..|
T Consensus       323 ~~y~y~l~~~~gGec~lik~h  343 (391)
T KOG2110|consen  323 HLYSYRLPPKEGGECALIKRH  343 (391)
T ss_pred             eEEEEEcCCCCCceeEEEEee
Confidence            9999999873 4444 44555

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.80  E-value=1.4e-07  Score=109.51  Aligned_cols=101  Identities=11%  Similarity=0.127  Sum_probs=70.9

Q ss_pred             CCCEEEEEECCCC--ceEEEeccCCCC-e-EEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          388 NVGMVIVRDIVSK--NVIAQFRAHKSP-I-SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       388 ~~G~V~IwDl~s~--~~l~~~~aH~~p-I-saLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      .|+.|..|++.+.  .+++.|.+|... + ..-..+|||.+|++++.|++ ..||.+.... ..             -.+
T Consensus       291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~-ayiw~vs~~e-~~-------------~~~  355 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ-AYIWVVSSPE-AP-------------PAL  355 (720)
T ss_pred             cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc-eeeeeecCcc-CC-------------hhh
Confidence            3789999999764  456666665421 1 12357999999999999987 8999998641 00             122


Q ss_pred             ecccccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCCCCce
Q 002446          464 QRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSV  505 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSP--Dg~~LAsgS~DgTVhVWdi~~~g~~~  505 (921)
                      .-||+. .|++++|.|  ++. +|++|+|-+++||++..+.+..
T Consensus       356 l~Ght~-eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l~~~l~e~  397 (720)
T KOG0321|consen  356 LLGHTR-EVTTVRWLPSATTP-VATCSDDFRVKIWRLSNGLEEI  397 (720)
T ss_pred             hhCcce-EEEEEeeccccCCC-ceeeccCcceEEEeccCchhhc
Confidence            236543 489999955  555 5555999999999998765544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.80  E-value=1.3e-06  Score=92.94  Aligned_cols=99  Identities=25%  Similarity=0.447  Sum_probs=78.8

Q ss_pred             CCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc
Q 002446          388 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG  466 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGt-lLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG  466 (921)
                      .++.+++||+..+..+..+..|...|.+++|+|+|. ++++++.|++ |++||...+              ..+.....+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~-i~~wd~~~~--------------~~~~~~~~~  240 (466)
T COG2319         176 LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT-IRLWDLSTG--------------KLLRSTLSG  240 (466)
T ss_pred             CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCc-EEEEECCCC--------------cEEeeecCC
Confidence            368999999999999999999999999999999998 6666689987 789987743              222212344


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 002446          467 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG  503 (921)
Q Consensus       467 ~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~  503 (921)
                      +... . ...|+|++.++++++.|+++++|++.....
T Consensus       241 ~~~~-~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         241 HSDS-V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             CCcc-e-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence            4332 2 228999999999999999999999987655

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.79  E-value=3.3e-08  Score=117.04  Aligned_cols=280  Identities=16%  Similarity=0.235  Sum_probs=172.0

Q ss_pred             CCCCCCCcEEEEEEecccCCCCCCCeEEEEEccCc-EEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCcccc
Q 002446           83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~G-fqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~  161 (921)
                      ..-+|..-|.++-||+   .|    +.++.||++- ++||..++ +.+..-+.+|.|.++-+++.-+             
T Consensus       185 rLlgH~naVyca~fDr---tg----~~Iitgsdd~lvKiwS~et-~~~lAs~rGhs~ditdlavs~~-------------  243 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDR---TG----RYIITGSDDRLVKIWSMET-ARCLASCRGHSGDITDLAVSSN-------------  243 (1113)
T ss_pred             HHHhhhhheeeeeecc---cc----ceEeecCccceeeeeeccc-hhhhccCCCCccccchhccchh-------------
Confidence            4457899999999999   66    7888888776 69999887 3454456678888877665321             


Q ss_pred             CCCE-EEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEe-CCCCEEEEEEcCCEEE
Q 002446          162 VRPL-LVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSSRVVA  239 (921)
Q Consensus       162 ~rPL-LAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~-f~s~V~sV~~S~riLA  239 (921)
                        ++ +|..                                 ..++.||+|-|.++..|..|. +.+.|.+|+|+++- +
T Consensus       244 --n~~iaaa---------------------------------S~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-s  287 (1113)
T KOG0644|consen  244 --NTMIAAA---------------------------------SNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-S  287 (1113)
T ss_pred             --hhhhhhc---------------------------------ccCceEEEEecCCCchHHHHhccccceeeeccCccc-c
Confidence              22 2211                                 134889999999999999886 46799999999875 5


Q ss_pred             EEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCccCCccccccccccccc
Q 002446          240 ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFA  319 (921)
Q Consensus       240 Va~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~  319 (921)
                      .+.++++++||++ +..+   ...|.+....  ++ .+ +..+-+-..|-+|.+        |+-               
T Consensus       288 ss~dgt~~~wd~r-~~~~---~y~prp~~~~--~~-~~-~~s~~~~~~~~~f~T--------gs~---------------  336 (1113)
T KOG0644|consen  288 SSDDGTCRIWDAR-LEPR---IYVPRPLKFT--EK-DL-VDSILFENNGDRFLT--------GSR---------------  336 (1113)
T ss_pred             CCCCCceEecccc-cccc---ccCCCCCCcc--cc-cc-eeeeecccccccccc--------ccC---------------
Confidence            5778999999998 2222   1122111000  00 00 000000011122210        000               


Q ss_pred             CCCcceeehhhhcchhhcceeEecCCccccc-cccccccccCCCcCCcccccCCCCCCCcccCcccccCCCCEEEEEECC
Q 002446          320 SNGSRVAHYAKESSKHLAAGIVNLGDLGYKK-LSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV  398 (921)
Q Consensus       320 s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~-ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~  398 (921)
                                     ...++.+.+--..++. +..|.              ...    +..+...+++-.+-.+.+|.+.
T Consensus       337 ---------------d~ea~n~e~~~l~~~~~~lif~--------------t~s----sd~~~~~~~ar~~~~~~vwnl~  383 (1113)
T KOG0644|consen  337 ---------------DGEARNHEFEQLAWRSNLLIFV--------------TRS----SDLSSIVVTARNDHRLCVWNLY  383 (1113)
T ss_pred             ---------------CcccccchhhHhhhhccceEEE--------------ecc----ccccccceeeeeeeEeeeeecc
Confidence                           0000000000000000 00000              000    0000011233445678899999


Q ss_pred             CCceEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEE
Q 002446          399 SKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF  477 (921)
Q Consensus       399 s~~~l~~~~aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaF  477 (921)
                      ++.+++.+.+|..++..|.|.|= -+...+|+.||. +.|||+..+            ...+.|.  .|  ..++.+.+|
T Consensus       384 ~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~eg------------~pik~y~--~g--h~kl~d~kF  446 (1113)
T KOG0644|consen  384 TGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS-TIIWDIWEG------------IPIKHYF--IG--HGKLVDGKF  446 (1113)
T ss_pred             cchhhhhhcccccceeeeeecCCCcHhhhhccCCCc-eEeeecccC------------Ccceeee--cc--cceeecccc
Confidence            99999999999999999999994 556667899997 689999886            1223343  34  345889999


Q ss_pred             ccCCCEEEEEeCCCcEEEEecCC
Q 002446          478 SDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       478 SPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                      |+||+-++..-+-|-+.|+..-.
T Consensus       447 Sqdgts~~lsd~hgql~i~g~gq  469 (1113)
T KOG0644|consen  447 SQDGTSIALSDDHGQLYILGTGQ  469 (1113)
T ss_pred             CCCCceEecCCCCCceEEeccCC
Confidence            99999999999999998876543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=98.78  E-value=7.1e-08  Score=104.14  Aligned_cols=116  Identities=13%  Similarity=0.207  Sum_probs=88.3

Q ss_pred             ccccCCCCEEEEEECCCCceEEEec--cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL  460 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~--aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l  460 (921)
                      ++++..|++|+++|+........|+  ....+|.+|.|.|.|.+|+.|.+.-+ +|+||+.+..            +..-
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~-~rlYdv~T~Q------------cfvs  253 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT-LRLYDVNTYQ------------CFVS  253 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCc-eeEEecccee------------Eeee
Confidence            3466789999999998765555555  33469999999999999999888765 8999999851            1000


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee-cCCCC
Q 002446          461 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDA  512 (921)
Q Consensus       461 ~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l-~~H~~  512 (921)
                      ..-.-+++. .|+++-+|+.|++-+++|.||.|+|||=-...+..++ +.|.+
T Consensus       254 anPd~qht~-ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g  305 (430)
T KOG0640|consen  254 ANPDDQHTG-AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG  305 (430)
T ss_pred             cCccccccc-ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC
Confidence            111224443 4999999999999999999999999997777677666 56643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=3.2e-07  Score=101.86  Aligned_cols=107  Identities=21%  Similarity=0.238  Sum_probs=88.7

Q ss_pred             ccccCCCCEEEEEECCCC-ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 002446          383 FPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY  461 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~-~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~  461 (921)
                      |+++..-+.|++||...+ +++.+|.--..+|+++...|+|+++.+|...|. +..||+..+              .++.
T Consensus       219 fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~--------------kl~g  283 (412)
T KOG3881|consen  219 FATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGG--------------KLLG  283 (412)
T ss_pred             EEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCc--------------eeec
Confidence            444455588999999875 688999888899999999999999999999997 899999876              3333


Q ss_pred             EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCce
Q 002446          462 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV  505 (921)
Q Consensus       462 ~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~  505 (921)
                      ....|.+.+ |.+|.-.|..++||+++.|+-+||||+.+.+-..
T Consensus       284 ~~~kg~tGs-irsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  284 CGLKGITGS-IRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             cccCCccCC-cceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence            333566554 9999999999999999999999999999855443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.77  E-value=1.4e-06  Score=104.64  Aligned_cols=109  Identities=18%  Similarity=0.269  Sum_probs=83.5

Q ss_pred             cccCCCCEEEEEECCC--C--ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 002446          384 PDADNVGMVIVRDIVS--K--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH  459 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s--~--~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~  459 (921)
                      +.+..+|.|.||.--.  +  .....|.=|..+|.+|+|++||.+|.+|+..| .+-+|.+.++            ..+.
T Consensus       221 Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~-VLv~Wq~~T~------------~kqf  287 (792)
T KOG1963|consen  221 AAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG-VLVLWQLETG------------KKQF  287 (792)
T ss_pred             EEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce-EEEEEeecCC------------Cccc
Confidence            4566789999995322  1  23456777889999999999999999999998 5889999986            1112


Q ss_pred             EEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 002446          460 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT  510 (921)
Q Consensus       460 l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H  510 (921)
                         |.|-  .+.|..|.+|||+.+.+....|+.||+-...+-....++.+-
T Consensus       288 ---LPRL--gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi  333 (792)
T KOG1963|consen  288 ---LPRL--GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGI  333 (792)
T ss_pred             ---cccc--CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCc
Confidence               2221  356999999999999999999999999988765555555443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=2.5e-08  Score=107.94  Aligned_cols=128  Identities=20%  Similarity=0.298  Sum_probs=88.7

Q ss_pred             cccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCC-----CCCc--cCC-
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG-----TSSA--CDA-  453 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~-----~~s~--~~~-  453 (921)
                      +++.+..+|.|.|||+.+..+-..|.+|..||++||||+||++|+|+|.|- .|.+||+..+...     .++-  ..+ 
T Consensus        37 ~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~-si~lwDl~~gs~l~rirf~spv~~~q~h  115 (405)
T KOG1273|consen   37 YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDW-SIKLWDLLKGSPLKRIRFDSPVWGAQWH  115 (405)
T ss_pred             eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCc-eeEEEeccCCCceeEEEccCccceeeec
Confidence            455678899999999999998889999999999999999999999999996 5999999887220     0000  000 


Q ss_pred             -CCceeEE----------EEEec-----------ccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 002446          454 -GTSYVHL----------YRLQR-----------GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT  510 (921)
Q Consensus       454 -~~~~~~l----------~~l~R-----------G~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H  510 (921)
                       ......+          ..+.-           |.-+..-.+..|.+-|+|+.+|+.+|.++|++.++......++.-
T Consensus       116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit  194 (405)
T KOG1273|consen  116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT  194 (405)
T ss_pred             cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec
Confidence             0000000          01100           000000112347788999999999999999999998777666543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.74  E-value=4.3e-07  Score=106.37  Aligned_cols=113  Identities=19%  Similarity=0.165  Sum_probs=76.5

Q ss_pred             CEEEEEECC--CCceEEEeccCCCCeEEEEECCCCC---EEEEEecCCCEEEEEeCCCCCCCCC------CccCC-CCce
Q 002446          390 GMVIVRDIV--SKNVIAQFRAHKSPISALCFDPSGI---LLVTASVQGHNINIFKIIPGILGTS------SACDA-GTSY  457 (921)
Q Consensus       390 G~V~IwDl~--s~~~l~~~~aH~~pIsaLaFSPdGt---lLATaS~DGt~IrIWdi~~g~~~~~------s~~~~-~~~~  457 (921)
                      -.|.||.-.  +-+.+..+++|..-|..|+|..-|.   +|||+|.|. .||||.+.......+      ...-. ....
T Consensus       169 ~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~-yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f  247 (764)
T KOG1063|consen  169 FVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDR-YIRIWRIVLGDDEDSNEREDSLTTLSNLPVF  247 (764)
T ss_pred             eEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCce-EEEEEEEEecCCccccccccccccccCCcee
Confidence            344454433  3357789999999999999998766   899999995 599999876521000      00000 0001


Q ss_pred             eEEE---------EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc
Q 002446          458 VHLY---------RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS  504 (921)
Q Consensus       458 ~~l~---------~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~  504 (921)
                      ..+.         .+--||... |+++-|+|++..|.++|+|.|+.||.-.+..|.
T Consensus       248 ~~l~~i~~~is~eall~GHeDW-V~sv~W~p~~~~LLSASaDksmiiW~pd~~tGi  302 (764)
T KOG1063|consen  248 MILEEIQYRISFEALLMGHEDW-VYSVWWHPEGLDLLSASADKSMIIWKPDENTGI  302 (764)
T ss_pred             eeeeeEEEEEehhhhhcCcccc-eEEEEEccchhhheecccCcceEEEecCCccce
Confidence            1111         122366554 999999999999999999999999987766443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=6.3e-06  Score=95.62  Aligned_cols=81  Identities=16%  Similarity=0.204  Sum_probs=53.9

Q ss_pred             EEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       391 ~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DG--t~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      .|.++|+.+++. ..+..+...+...+|||||++||..+.++  ..|.+||+..+             ...  .+..+. 
T Consensus       315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~-------------~~~--~lt~~~-  377 (435)
T PRK05137        315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS-------------GER--ILTSGF-  377 (435)
T ss_pred             eEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC-------------ceE--eccCCC-
Confidence            578888876654 33443455667789999999999887543  24667776543             111  222221 


Q ss_pred             cccEEEEEEccCCCEEEEEeCC
Q 002446          469 NAVIQDISFSDDSNWIMISSSR  490 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~D  490 (921)
                        .+.+++|||||++|+..+.+
T Consensus       378 --~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        378 --LVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             --CCCCCeECCCCCEEEEEEcc
Confidence              36789999999999887654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.73  E-value=2.4e-08  Score=116.52  Aligned_cols=99  Identities=15%  Similarity=0.330  Sum_probs=79.8

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccccc
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN  469 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~  469 (921)
                      ..|+||...+-..+..++.|.-.|+.|+|||||++|+++|.|.+ +.+|.........         ..  +..-..| .
T Consensus       552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt-~sl~~~~~~~~~e---------~~--fa~~k~H-t  618 (764)
T KOG1063|consen  552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT-VSLYEVQEDIKDE---------FR--FACLKAH-T  618 (764)
T ss_pred             eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce-EEeeeeecccchh---------hh--hcccccc-c
Confidence            47999999998888899999999999999999999999999976 8999887641100         00  1111122 2


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          470 AVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       470 a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      -.|++++|+||+++|||+|.|.+|+||.+...
T Consensus       619 RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  619 RIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             eEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            24999999999999999999999999998764

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.72  E-value=1.5e-07  Score=104.39  Aligned_cols=118  Identities=13%  Similarity=0.126  Sum_probs=89.1

Q ss_pred             cccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          384 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      .+++.+.+|.||++.+++.+-++. |..-|.+++|+.||.+|+|++.|.+ |||||..++              ..+.+-
T Consensus       148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr~~--------------~~v~e~  211 (472)
T KOG0303|consen  148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPRRG--------------TVVSEG  211 (472)
T ss_pred             hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eEEEcCCCC--------------cEeeec
Confidence            455678899999999999988888 9999999999999999999999976 999999886              223333


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeC---CCcEEEEecCCCCC---ceeecCCCCCccccc
Q 002446          464 QRGLTNAVIQDISFSDDSNWIMISSS---RGTSHLFAINPLGG---SVNFQPTDANFTTKH  518 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSPDg~~LAsgS~---DgTVhVWdi~~~g~---~~~l~~H~~~~~~~~  518 (921)
                       .+|..++-+-+-|=.+|.++-+|-+   +..+-|||-..-.+   ...+.+-++..-+|+
T Consensus       212 -~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFy  271 (472)
T KOG0303|consen  212 -VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFY  271 (472)
T ss_pred             -ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeee
Confidence             4566666677889899995555543   56788998654433   344555555555544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=4.6e-06  Score=96.76  Aligned_cols=91  Identities=14%  Similarity=0.212  Sum_probs=55.8

Q ss_pred             EEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       391 ~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DG--t~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      .|.++|+.+++.. .+..+......++|||||++|+..+.++  ..|.+||+.++            ..   ..+..+. 
T Consensus       317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g------------~~---~~Lt~~~-  379 (433)
T PRK04922        317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG------------SV---RTLTPGS-  379 (433)
T ss_pred             eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC------------Ce---EECCCCC-
Confidence            4666677666532 2222333455689999999999876543  24889998765            11   1332222 


Q ss_pred             cccEEEEEEccCCCEEEEEeCC-CcEEEEecCC
Q 002446          469 NAVIQDISFSDDSNWIMISSSR-GTSHLFAINP  500 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~D-gTVhVWdi~~  500 (921)
                        .....+|||||++|+..+.+ +.-+||-+..
T Consensus       380 --~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        380 --LDESPSFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             --CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence              24567999999998887764 3434444433

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.70  E-value=1.5e-07  Score=97.92  Aligned_cols=91  Identities=15%  Similarity=0.357  Sum_probs=71.4

Q ss_pred             CCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecC---CCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          387 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ---GHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       387 ~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~D---Gt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      ..+..|.+||+. .+.+..|.  ..++..|+|||+|++||+|+.+   |. +.+||+...              ..+.+.
T Consensus        80 ~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~--------------~~i~~~  141 (194)
T PF08662_consen   80 SMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKK--------------KKISTF  141 (194)
T ss_pred             cCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCC--------------EEeecc
Confidence            345689999997 56666664  5688999999999999999854   43 899999864              444444


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeC------CCcEEEEecC
Q 002446          464 QRGLTNAVIQDISFSDDSNWIMISSS------RGTSHLFAIN  499 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSPDg~~LAsgS~------DgTVhVWdi~  499 (921)
                      ..    ..+.+++|||||++|++++.      |+.++||++.
T Consensus       142 ~~----~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  142 EH----SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cc----CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            32    23789999999999999875      7889999984

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.68  E-value=1.2e-07  Score=105.12  Aligned_cols=114  Identities=12%  Similarity=0.212  Sum_probs=93.4

Q ss_pred             ccccCCCCEEEEEECCCC-------ceEEEeccCCCCeEEEEECCCC-CEEEEEecCCCEEEEEeCCCCCCCCCCccCCC
Q 002446          383 FPDADNVGMVIVRDIVSK-------NVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAG  454 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~-------~~l~~~~aH~~pIsaLaFSPdG-tlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~  454 (921)
                      ++++..|.+|.||++-.+       +++..|.+|...|.-++|.|.. ..|+|++.|.+ |.||++.++           
T Consensus        97 IASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~-v~iWnv~tg-----------  164 (472)
T KOG0303|consen   97 IASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT-VSIWNVGTG-----------  164 (472)
T ss_pred             eecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce-EEEEeccCC-----------
Confidence            467788999999998643       5688999999999999999974 58999999965 999999997           


Q ss_pred             CceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCc
Q 002446          455 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF  514 (921)
Q Consensus       455 ~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~  514 (921)
                         ..+.++.   +.-.|++++|+.||.+|++++.|..|+|||..+..-...-.+|.+.-
T Consensus       165 ---eali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k  218 (472)
T KOG0303|consen  165 ---EALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK  218 (472)
T ss_pred             ---ceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence               3455664   34569999999999999999999999999998864444446776653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.67  E-value=1.7e-07  Score=105.30  Aligned_cols=118  Identities=15%  Similarity=0.276  Sum_probs=95.5

Q ss_pred             CcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 002446          381 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH  459 (921)
Q Consensus       381 g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~  459 (921)
                      ..+++++.|.+|++||+.++++..++..|...|.+|+|.|. .++|+++|.||+ ++++|....  ..+         ..
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~-V~l~D~R~~--~~s---------~~  324 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT-VALKDCRDP--SNS---------GK  324 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccce-EEeeeccCc--ccc---------Cc
Confidence            34567888999999999999999999999999999999995 889999999998 899999852  110         12


Q ss_pred             EEEEecccccccEEEEEEccCCCE-EEEEeCCCcEEEEecCCCCCce-eecCCCCCcc
Q 002446          460 LYRLQRGLTNAVIQDISFSDDSNW-IMISSSRGTSHLFAINPLGGSV-NFQPTDANFT  515 (921)
Q Consensus       460 l~~l~RG~t~a~I~sIaFSPDg~~-LAsgS~DgTVhVWdi~~~g~~~-~l~~H~~~~~  515 (921)
                      .+++     .+.|-.++|.|.+.. +.+++.||++|=||+...+..+ ++++|.+.+.
T Consensus       325 ~wk~-----~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS  377 (463)
T KOG0270|consen  325 EWKF-----DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS  377 (463)
T ss_pred             eEEe-----ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence            3444     245999999987764 5678899999999999876554 7799977665

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=6.7e-08  Score=118.12  Aligned_cols=102  Identities=18%  Similarity=0.237  Sum_probs=79.0

Q ss_pred             ccCCCCEEEEEECCCCceEEEeccCCC--CeEEEEECCCC-CEEEEEecCCC--EEEEEeCCCCCCCCCCccCCCCceeE
Q 002446          385 DADNVGMVIVRDIVSKNVIAQFRAHKS--PISALCFDPSG-ILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYVH  459 (921)
Q Consensus       385 s~~~~G~V~IwDl~s~~~l~~~~aH~~--pIsaLaFSPdG-tlLATaS~DGt--~IrIWdi~~g~~~~~s~~~~~~~~~~  459 (921)
                      ++...|.+.|||++.++++-.|..|..  .++.|+|+||+ +.|++|+.|.+  +|.+||+.-.   +          ..
T Consensus       179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a---s----------sP  245 (1049)
T KOG0307|consen  179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA---S----------SP  245 (1049)
T ss_pred             ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc---C----------Cc
Confidence            445668899999999999888887765  47889999985 56888877754  6999998753   1          11


Q ss_pred             EEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEecCCC
Q 002446          460 LYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       460 l~~l~RG~t~a~I~sIaFSPDg-~~LAsgS~DgTVhVWdi~~~  501 (921)
                      +..+ ++|..+ |.+++|++.+ ++|++++.|+.|.+|+.+++
T Consensus       246 ~k~~-~~H~~G-ilslsWc~~D~~lllSsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  246 LKIL-EGHQRG-ILSLSWCPQDPRLLLSSGKDNRIICWNPNTG  286 (1049)
T ss_pred             hhhh-cccccc-eeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence            2233 455443 9999999855 99999999999999999884

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.67  E-value=1.1e-06  Score=94.42  Aligned_cols=100  Identities=17%  Similarity=0.250  Sum_probs=80.7

Q ss_pred             CCCCEEEEEECCCCceEEEec-cCCCCeEEEEECCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 002446          387 DNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ  464 (921)
Q Consensus       387 ~~~G~V~IwDl~s~~~l~~~~-aH~~pIsaLaFSPdGt-lLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~  464 (921)
                      ..++++..||+.+.+....++ +|...|..|.|+|+-+ +||||++||. |||||+...             ...+.++ 
T Consensus       190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~t-------------k~pv~el-  254 (370)
T KOG1007|consen  190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKT-------------KFPVQEL-  254 (370)
T ss_pred             eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCC-------------Ccccccc-
Confidence            457899999999988777776 9999999999999865 6999999997 999999864             1234455 


Q ss_pred             cccccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCC
Q 002446          465 RGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLG  502 (921)
Q Consensus       465 RG~t~a~I~sIaFSP-Dg~~LAsgS~DgTVhVWdi~~~g  502 (921)
                      .+|. +.|+++-|.| -.+.|.+|++|..|-+|-...-.
T Consensus       255 ~~Hs-HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  255 PGHS-HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             CCCc-eEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence            3544 4599999998 46788899999999999876543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.66  E-value=1.4e-06  Score=93.95  Aligned_cols=89  Identities=19%  Similarity=0.347  Sum_probs=66.4

Q ss_pred             CEEEEEECCCC-ceEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          390 GMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       390 G~V~IwDl~s~-~~l~~~~aH~~pIsaLaFSP-dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      ..|.|.|+... .+++.++.|.+.|..++|.| +...|+||++|- .+-|||+..-....  ..    .....|+.    
T Consensus       266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~-qaliWDl~q~~~~~--~~----dPilay~a----  334 (364)
T KOG0290|consen  266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC-QALIWDLQQMPREN--GE----DPILAYTA----  334 (364)
T ss_pred             ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc-eEEEEecccccccC--CC----Cchhhhhc----
Confidence            57899999864 68899999999999999999 577999999995 58999998741100  00    11122332    


Q ss_pred             ccccEEEEEEcc-CCCEEEEEeCC
Q 002446          468 TNAVIQDISFSD-DSNWIMISSSR  490 (921)
Q Consensus       468 t~a~I~sIaFSP-Dg~~LAsgS~D  490 (921)
                       .+.|..|.|++ .+.|||++...
T Consensus       335 -~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  335 -GGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             -cceeeeeeecccCCCEEEEEecC
Confidence             23599999984 78999998754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.65  E-value=1.2e-05  Score=93.33  Aligned_cols=72  Identities=22%  Similarity=0.329  Sum_probs=47.2

Q ss_pred             eEEEEECCCCCEEEEEecCCC--EEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 002446          413 ISALCFDPSGILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR  490 (921)
Q Consensus       413 IsaLaFSPdGtlLATaS~DGt--~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~D  490 (921)
                      ....+|||||++||.++.++.  .|.+||+.++            ...   .+..+   ......+|+|||++|+.++.+
T Consensus       330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g------------~~~---~lt~~---~~~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATG------------QVT---ALTDT---TRDESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             cCceEECCCCCEEEEEEccCCcEEEEEEECCCC------------CeE---EccCC---CCccCceECCCCCEEEEEEec
Confidence            345789999999998876642  4889998765            111   22222   124678999999999988765


Q ss_pred             C-cEEEEecCCCC
Q 002446          491 G-TSHLFAINPLG  502 (921)
Q Consensus       491 g-TVhVWdi~~~g  502 (921)
                      + .-.++-+...+
T Consensus       392 ~g~~~l~~~~~~g  404 (427)
T PRK02889        392 GGRSVLAAVSSDG  404 (427)
T ss_pred             CCCEEEEEEECCC
Confidence            4 33455444333

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.65  E-value=8.3e-07  Score=100.69  Aligned_cols=107  Identities=14%  Similarity=0.225  Sum_probs=83.6

Q ss_pred             ccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR  462 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~  462 (921)
                      +.+++..|.|+|||+..+.+...++.|++.|++|.++-...+||+.+.-|. |.|..+.++.              ..-+
T Consensus        94 ~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd-iiih~~~t~~--------------~tt~  158 (673)
T KOG4378|consen   94 EISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGD-IIIHGTKTKQ--------------KTTT  158 (673)
T ss_pred             eeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCc-EEEEecccCc--------------cccc
Confidence            345677899999999988888899999999999999999999999999887 7898888761              1112


Q ss_pred             EecccccccEEEEEEccCCCEE-EEEeCCCcEEEEecCCCCCce
Q 002446          463 LQRGLTNAVIQDISFSDDSNWI-MISSSRGTSHLFAINPLGGSV  505 (921)
Q Consensus       463 l~RG~t~a~I~sIaFSPDg~~L-AsgS~DgTVhVWdi~~~g~~~  505 (921)
                      |.-+. ...|.-+.|||-.+++ .++|++|+|+|||+.......
T Consensus       159 f~~~s-gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~  201 (673)
T KOG4378|consen  159 FTIDS-GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF  201 (673)
T ss_pred             eecCC-CCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc
Confidence            22121 1236688999988875 578999999999997654433

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.63  E-value=1e-06  Score=105.70  Aligned_cols=104  Identities=13%  Similarity=0.175  Sum_probs=77.0

Q ss_pred             CCCEEEEEECCCCceEE----EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          388 NVGMVIVRDIVSKNVIA----QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~l~----~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      ....+.+|+..++....    .-+-|+.+++|.+|||.++++|++..||+ |.||.-... .+         .......+
T Consensus       179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~vw~d~~~-~~---------~~~t~t~l  247 (792)
T KOG1963|consen  179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-ILVWRDFGS-SD---------DSETCTLL  247 (792)
T ss_pred             EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EEEEecccc-cc---------ccccceEE
Confidence            34567888887754111    11267888999999999999999999998 899964431 00         01112345


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc
Q 002446          464 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS  504 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~  504 (921)
                      ++.+  +.|.+++||+||.+|.+|+..+.+-+|.+.+.+..
T Consensus       248 HWH~--~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq  286 (792)
T KOG1963|consen  248 HWHH--DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ  286 (792)
T ss_pred             Eecc--cccceeEEecCCceEeecccceEEEEEeecCCCcc
Confidence            5543  46999999999999999999999999999987643

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.59  E-value=3e-05  Score=84.78  Aligned_cols=108  Identities=19%  Similarity=0.269  Sum_probs=72.0

Q ss_pred             EEEEEECCCCceEEEeccC--CCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCC---CCccCC-------CCcee
Q 002446          391 MVIVRDIVSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT---SSACDA-------GTSYV  458 (921)
Q Consensus       391 ~V~IwDl~s~~~l~~~~aH--~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~---~s~~~~-------~~~~~  458 (921)
                      .|+|||..+|+.+..|+.-  ...|.||+||||+.+||.+|++|| ++||.+.......   ++....       .++.+
T Consensus       205 LIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~w  283 (346)
T KOG2111|consen  205 LIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEW  283 (346)
T ss_pred             EEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccchhcccce
Confidence            4899999999999999833  357999999999999999999998 8999998743211   111100       01112


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          459 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       459 ~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      -+.+++-  ......-++|-.+.+-++....||+-+=+.+.+.
T Consensus       284 S~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~  324 (346)
T KOG2111|consen  284 SFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK  324 (346)
T ss_pred             eEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence            2222211  1122456788888666666677898766555543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.59  E-value=3.7e-07  Score=105.57  Aligned_cols=91  Identities=14%  Similarity=0.263  Sum_probs=71.1

Q ss_pred             cccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          384 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      +.+.++-+|+|||+.+.+....|.+|+..|-.++|||||+++||.+.||+ |+||+-...+             ..+|+-
T Consensus       694 a~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e-------------~pv~Eg  759 (1012)
T KOG1445|consen  694 AVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSRE-------------QPVYEG  759 (1012)
T ss_pred             hhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCC-------------CccccC
Confidence            34567789999999999999999999999999999999999999999998 8999876541             112221


Q ss_pred             e--cccccccEEEEEEccCCCEEEEEeCCC
Q 002446          464 Q--RGLTNAVIQDISFSDDSNWIMISSSRG  491 (921)
Q Consensus       464 ~--RG~t~a~I~sIaFSPDg~~LAsgS~Dg  491 (921)
                      .  -|...|   -|.|.-||+++.+.+.|.
T Consensus       760 ~gpvgtRgA---Ri~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  760 KGPVGTRGA---RILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             CCCccCcce---eEEEEecCcEEEEecccc
Confidence            0  122223   466888999999888764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.57  E-value=1.2e-06  Score=106.38  Aligned_cols=108  Identities=13%  Similarity=0.156  Sum_probs=75.8

Q ss_pred             cccccCCCCEEEEEECCCCceE--EEeccCC--C-CeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCc
Q 002446          382 HFPDADNVGMVIVRDIVSKNVI--AQFRAHK--S-PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS  456 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l--~~~~aH~--~-pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~  456 (921)
                      .++++..+|.|++||+......  -++..|.  + ..++|...++..++|+|+. + .|+||++.-..-..         
T Consensus      1271 elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~G~~l~~--------- 1339 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLSGEQLNI--------- 1339 (1387)
T ss_pred             ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecChhhhcc---------
Confidence            3456678899999999874322  2333554  3 5999999999999999998 4 49999987530000         


Q ss_pred             eeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          457 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       457 ~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                       ..-+...-|.....+.|++|.|---.+|+|+.|.+|-||...+.
T Consensus      1340 -~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 -IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             -cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence             00001011222223789999999999999999999999987765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.57  E-value=0.00016  Score=81.55  Aligned_cols=85  Identities=18%  Similarity=0.394  Sum_probs=60.0

Q ss_pred             CeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEe-CC
Q 002446          412 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SR  490 (921)
Q Consensus       412 pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS-~D  490 (921)
                      ....|+++|||++|..+......|-+|++... .         +....+..+.-+  ......++|+|||+||+++. .+
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~---------g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s  313 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA-T---------GTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDS  313 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-T---------TTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTT
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecC-C---------CceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCC
Confidence            57889999999999988877777999999542 1         123333333321  12278999999999999887 56


Q ss_pred             CcEEEEecCCCCCceeec
Q 002446          491 GTSHLFAINPLGGSVNFQ  508 (921)
Q Consensus       491 gTVhVWdi~~~g~~~~l~  508 (921)
                      ++|.+|+++...+.....
T Consensus       314 ~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  314 NTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             TEEEEEEEETTTTEEEEE
T ss_pred             CeEEEEEEeCCCCcEEEe
Confidence            799999998766665543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.55  E-value=1.7e-05  Score=88.83  Aligned_cols=304  Identities=20%  Similarity=0.305  Sum_probs=164.8

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCC--------eEEeeeeecCCEEEEEEecCCCCCccccCc
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADN--------VHDLVSRYDGPVSFMQMLPRPITSKRSRDK  158 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~--------~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~  158 (921)
                      .++.|.-+.|.+   ...  ..+...|.++.++||-++....        ..-.+++|++.|.++++.|+          
T Consensus        12 ~~~pv~s~dfq~---n~~--~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~----------   76 (434)
T KOG1009|consen   12 DHEPVYSVDFQK---NSL--NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD----------   76 (434)
T ss_pred             CCCceEEEEecc---Ccc--cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC----------
Confidence            467788888888   321  1555666688899999976421        12235789999999999874          


Q ss_pred             cccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECC--------C-----C---cEEEEE
Q 002446          159 FAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLR--------S-----Q---SYVHML  222 (921)
Q Consensus       159 F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~--------T-----g---~~V~tL  222 (921)
                          ..+||.++++                                 +.|.+|-..        +     .   ...+.+
T Consensus        77 ----gelLASg~D~---------------------------------g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l  119 (434)
T KOG1009|consen   77 ----GELLASGGDG---------------------------------GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVL  119 (434)
T ss_pred             ----cCeeeecCCC---------------------------------ceEEEEEecCcCCccccchhhhCccceEEEEEe
Confidence                2578777653                                 234444332        3     1   122333


Q ss_pred             e-CCCCEEEEEEc--CCEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecC--ceEEecCCCc
Q 002446          223 K-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPV  296 (921)
Q Consensus       223 ~-f~s~V~sV~~S--~riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgp--RwLAyas~~~  296 (921)
                      . +...||.++++  .+++++ +.++.+++||+..++.+..+..|....            .-+|..|  +++|.-+.  
T Consensus       120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yv------------qgvawDpl~qyv~s~s~--  185 (434)
T KOG1009|consen  120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYV------------QGVAWDPLNQYVASKSS--  185 (434)
T ss_pred             cccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccc------------ceeecchhhhhhhhhcc--
Confidence            3 35799999997  356655 889999999999999998888775421            1133322  33332211  


Q ss_pred             eecCCCccCCcccccccccccccCCCcceeehhhhc--chhhc----ceeEecCCccccccccccc--cccCCCcCCccc
Q 002446          297 VVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKES--SKHLA----AGIVNLGDLGYKKLSQYCS--EFLPDSQNSLQS  368 (921)
Q Consensus       297 ~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~--sK~La----sGl~~lGd~g~k~ls~y~~--~~~p~~~~si~s  368 (921)
                           .| .|....-        .--..+..++...  ++.-.    .-++.+.|...+   .++.  .++|++.  .. 
T Consensus       186 -----dr-~~~~~~~--------~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk---sFFrRlsfTPdG~--ll-  245 (434)
T KOG1009|consen  186 -----DR-HPEGFSA--------KLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK---SFFRRLSFTPDGS--LL-  245 (434)
T ss_pred             -----Cc-ccceeee--------eeeeeeeeeeeeEeeecccCCCCcceeeeeecCchh---hhhhhcccCCCCc--EE-
Confidence                 11 0000000        0000000111000  00000    001111111111   1111  1223331  10 


Q ss_pred             ccCCCCCCCcccCcccccC--CCCEEEEEECC-CCceEEEeccCCCCeEEEEECC------------------CCCEEEE
Q 002446          369 AIPGGKSNGTVNGHFPDAD--NVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDP------------------SGILLVT  427 (921)
Q Consensus       369 a~~~~k~~g~v~g~~~s~~--~~G~V~IwDl~-s~~~l~~~~aH~~pIsaLaFSP------------------dGtlLAT  427 (921)
                      ..|.        +.+-.++  ...+.++|+-. ..++++.+..-..+..++.|+|                  -+..+|.
T Consensus       246 vtPa--------g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfai  317 (434)
T KOG1009|consen  246 VTPA--------GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAI  317 (434)
T ss_pred             Eccc--------ceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEE
Confidence            0110        0000000  02334555433 2467778887778888888765                  2345677


Q ss_pred             EecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          428 ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       428 aS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      |..+  .+.|||..+-              ..++.+. +.+-+.|++||||+||..|+++|.||-+-+--+.+.
T Consensus       318 At~~--svyvydtq~~--------------~P~~~v~-nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  318 ATKN--SVYVYDTQTL--------------EPLAVVD-NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             eecc--eEEEeccccc--------------cceEEEe-eeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence            7776  4899998863              2233332 334456999999999999999999998877666553

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.54  E-value=1.9e-06  Score=92.88  Aligned_cols=107  Identities=16%  Similarity=0.239  Sum_probs=81.9

Q ss_pred             cccccCCCCEEEEEECCCCceEEEec---cCCCCeEEEEECC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQFR---AHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY  457 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~~~---aH~~pIsaLaFSP-dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~  457 (921)
                      .|++.+.||.|+++|+....--..+-   ....|...|++++ |-.+|||-..|...|.|-|+...             +
T Consensus       211 ~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-------------~  277 (364)
T KOG0290|consen  211 VFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-------------C  277 (364)
T ss_pred             eEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-------------C
Confidence            45566789999999998875433333   2246888899998 56789998888888999999874             2


Q ss_pred             eEEEEEecccccccEEEEEEccC-CCEEEEEeCCCcEEEEecCCCCC
Q 002446          458 VHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGG  503 (921)
Q Consensus       458 ~~l~~l~RG~t~a~I~sIaFSPD-g~~LAsgS~DgTVhVWdi~~~g~  503 (921)
                      ..+.+| |+| .+.|+.|+|.|. +..|+++++|.-+-|||+.....
T Consensus       278 tpva~L-~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  278 TPVARL-RNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             cceehh-hcC-cccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            345566 454 467999999996 46899999999999999986533

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=9.3e-07  Score=98.99  Aligned_cols=75  Identities=19%  Similarity=0.301  Sum_probs=63.1

Q ss_pred             CCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 002446          410 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS  489 (921)
Q Consensus       410 ~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~  489 (921)
                      ...|++|+.|+||+++|-++.||. |-|+++..-              +.++-.++-|- ..|+.|.|+||.+++++.|.
T Consensus       281 ~~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~l--------------q~~~~vk~aH~-~~VT~ltF~Pdsr~~~svSs  344 (398)
T KOG0771|consen  281 FKSISSLAVSDDGKFLALGTMDGS-VAIYDAKSL--------------QRLQYVKEAHL-GFVTGLTFSPDSRYLASVSS  344 (398)
T ss_pred             cCcceeEEEcCCCcEEEEeccCCc-EEEEEecee--------------eeeEeehhhhe-eeeeeEEEcCCcCccccccc
Confidence            358999999999999999999996 899998763              44555555443 35999999999999999999


Q ss_pred             CCcEEEEecCC
Q 002446          490 RGTSHLFAINP  500 (921)
Q Consensus       490 DgTVhVWdi~~  500 (921)
                      |.+++|..+.-
T Consensus       345 ~~~~~v~~l~v  355 (398)
T KOG0771|consen  345 DNEAAVTKLAV  355 (398)
T ss_pred             CCceeEEEEee
Confidence            99999998854

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=3e-07  Score=102.88  Aligned_cols=131  Identities=17%  Similarity=0.250  Sum_probs=93.1

Q ss_pred             cccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCC--CCC--C--------
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL--GTS--S--------  449 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~--~~~--s--------  449 (921)
                      .+++++.||++|||+..+...+..+.+|...|.+|.|||||++||+-+.|+  .+||++.++.+  ..+  +        
T Consensus       158 ~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~--~~VW~~~~g~~~a~~t~~~k~~~~~~c  235 (398)
T KOG0771|consen  158 KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADS--ARVWSVNTGAALARKTPFSKDEMFSSC  235 (398)
T ss_pred             EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCc--eEEEEeccCchhhhcCCcccchhhhhc
Confidence            456778899999999998888889999999999999999999999999993  79999998721  000  0        


Q ss_pred             ---ccC------------CCCceeE-EEEEecc---------c-ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 002446          450 ---ACD------------AGTSYVH-LYRLQRG---------L-TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG  503 (921)
Q Consensus       450 ---~~~------------~~~~~~~-l~~l~RG---------~-t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~  503 (921)
                         ..+            +...... -..+.++         . ....|.+++.|+||+++|.|+.||.|-|++..+-..
T Consensus       236 RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~  315 (398)
T KOG0771|consen  236 RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR  315 (398)
T ss_pred             eecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee
Confidence               000            0000000 0011112         0 011389999999999999999999999999987644


Q ss_pred             ceee-cCCCCCc
Q 002446          504 SVNF-QPTDANF  514 (921)
Q Consensus       504 ~~~l-~~H~~~~  514 (921)
                      ..-+ +.|..-+
T Consensus       316 ~~~vk~aH~~~V  327 (398)
T KOG0771|consen  316 LQYVKEAHLGFV  327 (398)
T ss_pred             eEeehhhheeee
Confidence            4333 6675433

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=2.2e-07  Score=106.78  Aligned_cols=114  Identities=20%  Similarity=0.300  Sum_probs=88.8

Q ss_pred             CcccccCCCCEEEEEECCC--------CceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccC
Q 002446          381 GHFPDADNVGMVIVRDIVS--------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD  452 (921)
Q Consensus       381 g~~~s~~~~G~V~IwDl~s--------~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~  452 (921)
                      ++++++..+|++++|.++.        -+++.+|++|.+||-|++.+++|..+.||+.||+ |+.|++.+. ..+....+
T Consensus       307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n-~dp~ds~d  384 (577)
T KOG0642|consen  307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPN-QDPDDSYD  384 (577)
T ss_pred             CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCC-CCcccccC
Confidence            3567788999999999932        2578899999999999999999999999999998 999988743 11111111


Q ss_pred             CCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          453 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       453 ~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      +    .-+....-||+.+ |+.+++|+...+|+++|.|||+++|.....
T Consensus       385 p----~vl~~~l~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~~~  428 (577)
T KOG0642|consen  385 P----SVLSGTLLGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPTEE  428 (577)
T ss_pred             c----chhccceeccccc-eeeeeecccccceeeecCCceEEeeccCCc
Confidence            1    1112223588766 999999999999999999999999987543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.51  E-value=1.5e-07  Score=107.63  Aligned_cols=95  Identities=18%  Similarity=0.303  Sum_probs=69.8

Q ss_pred             ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccC
Q 002446          401 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD  480 (921)
Q Consensus       401 ~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPD  480 (921)
                      .++..+.--.++|...+|||||++||+.|.||. +||||..+.               +|.-+-+-+- +-..|++||||
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~---------------eLlg~mkSYF-GGLLCvcWSPD  343 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQ---------------ELLGVMKSYF-GGLLCVCWSPD  343 (636)
T ss_pred             CccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHH---------------HHHHHHHhhc-cceEEEEEcCC
Confidence            455555444568999999999999999999997 899998874               1111111111 12789999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 002446          481 SNWIMISSSRGTSHLFAINPLGGSVNFQPTDA  512 (921)
Q Consensus       481 g~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~  512 (921)
                      |+||++|+.|.-|-||.+....-...=++|.+
T Consensus       344 GKyIvtGGEDDLVtVwSf~erRVVARGqGHkS  375 (636)
T KOG2394|consen  344 GKYIVTGGEDDLVTVWSFEERRVVARGQGHKS  375 (636)
T ss_pred             ccEEEecCCcceEEEEEeccceEEEecccccc
Confidence            99999999999999999977533333366643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.49  E-value=4.3e-06  Score=96.94  Aligned_cols=90  Identities=10%  Similarity=0.124  Sum_probs=61.6

Q ss_pred             EEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEec-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccc
Q 002446          392 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA  470 (921)
Q Consensus       392 V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~-DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a  470 (921)
                      |.+||+.+++. ..+..|...+.+.+|+|||+.|+.++. +|. .+||++... .         .. ..  .+  +.. .
T Consensus       274 Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~-~---------~~-~~--~l--~~~-~  335 (429)
T PRK01742        274 IYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSAS-G---------GG-AS--LV--GGR-G  335 (429)
T ss_pred             EEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECC-C---------CC-eE--Ee--cCC-C
Confidence            56667776654 556677778889999999998876664 565 799987653 0         01 11  11  111 1


Q ss_pred             cEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 002446          471 VIQDISFSDDSNWIMISSSRGTSHLFAINPLG  502 (921)
Q Consensus       471 ~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g  502 (921)
                        .+++|||||++|+.++.++ +.+||+.++.
T Consensus       336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~  364 (429)
T PRK01742        336 --YSAQISADGKTLVMINGDN-VVKQDLTSGS  364 (429)
T ss_pred             --CCccCCCCCCEEEEEcCCC-EEEEECCCCC
Confidence              3578999999999988866 5558987643

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.45  E-value=1.1e-06  Score=100.72  Aligned_cols=61  Identities=11%  Similarity=0.324  Sum_probs=55.5

Q ss_pred             cccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCC
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g  443 (921)
                      +++....||.++|+|+.+.+++..++..-+...|++|||||+|+||+++|- .+.||.....
T Consensus       304 ~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~er  364 (636)
T KOG2394|consen  304 YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEER  364 (636)
T ss_pred             eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEeccc
Confidence            556678899999999999999999998889999999999999999999995 7999998864

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.42  E-value=0.00043  Score=78.66  Aligned_cols=101  Identities=15%  Similarity=0.173  Sum_probs=70.1

Q ss_pred             CEEEEEECCC-----CceEEEecc-------CCCCeEEEEECCCCCEEEEEec---------CCCEEEEEeCCCCCCCCC
Q 002446          390 GMVIVRDIVS-----KNVIAQFRA-------HKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTS  448 (921)
Q Consensus       390 G~V~IwDl~s-----~~~l~~~~a-------H~~pIsaLaFSPdGtlLATaS~---------DGt~IrIWdi~~g~~~~~  448 (921)
                      |+|.+.|+..     .+.+..+..       ..+.+.-++|+|||+.|..+..         -++.|-++|+.++     
T Consensus       215 G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~-----  289 (352)
T TIGR02658       215 GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG-----  289 (352)
T ss_pred             CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC-----
Confidence            9999999644     333333321       2234445999999998887542         1245888888875     


Q ss_pred             CccCCCCceeEEEEEecccccccEEEEEEccCCC-EEEEEe-CCCcEEEEecCCCCCceee
Q 002446          449 SACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       449 s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~-~LAsgS-~DgTVhVWdi~~~g~~~~l  507 (921)
                               +.+.++.-|   ..+..|+||||++ +|.+.. .+++|.|+|+.+......+
T Consensus       290 ---------kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       290 ---------KRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             ---------eEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence                     445555444   3588999999999 887776 5889999999887555554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.41  E-value=9.4e-05  Score=84.43  Aligned_cols=85  Identities=18%  Similarity=0.261  Sum_probs=56.7

Q ss_pred             EEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCC--EEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       391 ~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt--~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      .|.++|+.+++. ..+..+...+..++|+|||++|+.++.++.  .|.+||+.++            ...   .+..+  
T Consensus       303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~------------~~~---~l~~~--  364 (417)
T TIGR02800       303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG------------GER---VLTDT--  364 (417)
T ss_pred             eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC------------CeE---EccCC--
Confidence            577788877654 344445566778899999999999887752  3677777653            111   12111  


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEE
Q 002446          469 NAVIQDISFSDDSNWIMISSSRGTSH  494 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~DgTVh  494 (921)
                       ......+|+|||++|+.++.++...
T Consensus       365 -~~~~~p~~spdg~~l~~~~~~~~~~  389 (417)
T TIGR02800       365 -GLDESPSFAPNGRMILYATTRGGRG  389 (417)
T ss_pred             -CCCCCceECCCCCEEEEEEeCCCcE
Confidence             1234678999999999888876443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.39  E-value=2.5e-05  Score=90.68  Aligned_cols=94  Identities=19%  Similarity=0.232  Sum_probs=62.4

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEE--eCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF--KIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIW--di~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      ..|.+||+.+++. ..+..|.......+|+|||+.|+.++..+....||  |+..+            ....+ ++ .| 
T Consensus       272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g------------~~~~l-t~-~g-  335 (433)
T PRK04922        272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG------------SAERL-TF-QG-  335 (433)
T ss_pred             ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC------------CeEEe-ec-CC-
Confidence            4689999988865 45666666667899999999998877543224455  44433            11222 22 12 


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCC---cEEEEecCCC
Q 002446          468 TNAVIQDISFSDDSNWIMISSSRG---TSHLFAINPL  501 (921)
Q Consensus       468 t~a~I~sIaFSPDg~~LAsgS~Dg---TVhVWdi~~~  501 (921)
                        .....++|||||++||..+.++   .|.+|++.+.
T Consensus       336 --~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g  370 (433)
T PRK04922        336 --NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG  370 (433)
T ss_pred             --CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence              1244689999999999876543   5888888653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.38  E-value=5.2e-06  Score=95.15  Aligned_cols=81  Identities=15%  Similarity=0.104  Sum_probs=62.1

Q ss_pred             ccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR  462 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~  462 (921)
                      +++++.|-..+|||.. |+.+..-.+|..||++++|+|| +++|.+|.. + .|+   ...                   
T Consensus       201 I~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t-~R~---~~p-------------------  254 (737)
T KOG1524|consen  201 IASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-T-ARF---SSP-------------------  254 (737)
T ss_pred             eeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-e-eee---cCC-------------------
Confidence            4566778899999976 4566677899999999999999 888887764 3 441   111                   


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEE
Q 002446          463 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSH  494 (921)
Q Consensus       463 l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVh  494 (921)
                           ....|..++||+||..+++|+..|-+.
T Consensus       255 -----~~GSifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  255 -----RVGSIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             -----CccceEEEEEcCCCceeeccccCceEE
Confidence                 112388999999999999999888653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.36  E-value=2.9e-05  Score=94.76  Aligned_cols=114  Identities=16%  Similarity=0.203  Sum_probs=83.5

Q ss_pred             ccccCCCCEEEEEECCCC---ceEEEeccCCCC--eEEEEECCCCCE-EEEEecCCCEEEEEeCCCCCCCCCCccCCCCc
Q 002446          383 FPDADNVGMVIVRDIVSK---NVIAQFRAHKSP--ISALCFDPSGIL-LVTASVQGHNINIFKIIPGILGTSSACDAGTS  456 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~---~~l~~~~aH~~p--IsaLaFSPdGtl-LATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~  456 (921)
                      ++.+-.||.|++||....   ..+...+.|+..  |..+.|.+.|-- |++||.+|. |++||+.......        -
T Consensus      1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~--------~ 1294 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKET--------F 1294 (1387)
T ss_pred             EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccc--------c
Confidence            455667899999998753   467888999987  999999998876 999999997 9999998731111        0


Q ss_pred             eeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 002446          457 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT  510 (921)
Q Consensus       457 ~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H  510 (921)
                      ....+.-..|.   ..+++...++...+|+|+. +.|+||++.- .....++.+
T Consensus      1295 ~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n 1343 (1387)
T KOG1517|consen 1295 LTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYN 1343 (1387)
T ss_pred             ceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccC
Confidence            11111111242   3778999999999999999 9999999853 344455544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.35  E-value=8.6e-07  Score=67.48  Aligned_cols=38  Identities=29%  Similarity=0.680  Sum_probs=36.1

Q ss_pred             ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEe
Q 002446          401 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK  439 (921)
Q Consensus       401 ~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWd  439 (921)
                      +++.+|++|.++|.+|+|+|++.+|||++.|++ |+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence            578999999999999999999999999999987 99997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=4.5e-05  Score=83.04  Aligned_cols=118  Identities=15%  Similarity=0.217  Sum_probs=84.8

Q ss_pred             cccccCCCCEEEEEECCCC----ceEEEeccCCCCeEEEEECCC--CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCC
Q 002446          382 HFPDADNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGT  455 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~----~~l~~~~aH~~pIsaLaFSPd--GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~  455 (921)
                      ..+++..|++|+|||..+.    .+-...++|.+.|..+.+-+-  |+.+|+||.|++ +.||.-....... .    +.
T Consensus        27 RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt-v~iWEE~~~~~~~-~----~~  100 (361)
T KOG2445|consen   27 RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT-VSIWEEQEKSEEA-H----GR  100 (361)
T ss_pred             eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc-eeeeeeccccccc-c----cc
Confidence            3456778899999997543    577889999999999999774  999999999998 8999764320000 0    00


Q ss_pred             ceeEEEEEecccccccEEEEEEcc--CCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          456 SYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       456 ~~~~l~~l~RG~t~a~I~sIaFSP--Dg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                      .=....+|.  .....|++|+|+|  -|-.||+++.||++|||+.-.......+
T Consensus       101 ~Wv~~ttl~--DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W  152 (361)
T KOG2445|consen  101 RWVRRTTLV--DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW  152 (361)
T ss_pred             eeEEEEEee--cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence            001112221  1122499999998  5889999999999999998776665544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.34  E-value=0.00028  Score=81.59  Aligned_cols=51  Identities=12%  Similarity=0.123  Sum_probs=37.5

Q ss_pred             cEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe--C--CEEEEEECCCCcE
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ--A--AQVHCFDAATLEI  256 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVa~--d--~~I~IwDl~T~~~  256 (921)
                      ..|.+||+.+++......++..+...+++  ++.|+++.  +  ..|++||+.+++.
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~  279 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL  279 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence            46899999999876655666666678887  46776533  2  2799999998764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.33  E-value=5.3e-05  Score=88.10  Aligned_cols=95  Identities=19%  Similarity=0.177  Sum_probs=61.8

Q ss_pred             EEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccc
Q 002446          391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA  470 (921)
Q Consensus       391 ~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a  470 (921)
                      .|.+||+.+++.. .+..+...+...+|+|||+.|+.++.++...+||.+... .         +....+ .. .+   .
T Consensus       268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-~---------g~~~~l-t~-~~---~  331 (429)
T PRK03629        268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-G---------GAPQRI-TW-EG---S  331 (429)
T ss_pred             EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-C---------CCeEEe-ec-CC---C
Confidence            5889999888764 444445577889999999999888775433567754332 0         011222 11 11   1


Q ss_pred             cEEEEEEccCCCEEEEEeCCC---cEEEEecCCC
Q 002446          471 VIQDISFSDDSNWIMISSSRG---TSHLFAINPL  501 (921)
Q Consensus       471 ~I~sIaFSPDg~~LAsgS~Dg---TVhVWdi~~~  501 (921)
                      ...+.+|||||++|+..+.++   .+.+||+...
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g  365 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  365 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            256789999999998876543   4667777553

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.33  E-value=0.00012  Score=85.03  Aligned_cols=92  Identities=12%  Similarity=0.177  Sum_probs=61.4

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~D-Gt-~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      ..|.+||+.+++. ..+..|.......+|+|||+.|+.++.. |. .|.+||+..+            ..+.   +..+ 
T Consensus       270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~------------~~~~---lt~~-  332 (435)
T PRK05137        270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS------------NPRR---ISFG-  332 (435)
T ss_pred             ceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC------------CeEE---eecC-
Confidence            4588889988765 4566676667789999999999988753 32 3666676543            1222   2211 


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCC---cEEEEecC
Q 002446          468 TNAVIQDISFSDDSNWIMISSSRG---TSHLFAIN  499 (921)
Q Consensus       468 t~a~I~sIaFSPDg~~LAsgS~Dg---TVhVWdi~  499 (921)
                       ...+...+|||||++||..+.++   .|.+|++.
T Consensus       333 -~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~  366 (435)
T PRK05137        333 -GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD  366 (435)
T ss_pred             -CCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence             12356788999999999877543   46666653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.30  E-value=6.6e-05  Score=87.17  Aligned_cols=95  Identities=12%  Similarity=0.113  Sum_probs=61.4

Q ss_pred             EEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccc
Q 002446          391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA  470 (921)
Q Consensus       391 ~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a  470 (921)
                      .|.++|+.++. +..+..|...+...+|+|||+.|+..+..+....||.+... .         +....+ .+. +.   
T Consensus       265 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-~---------g~~~~l-t~~-g~---  328 (427)
T PRK02889        265 QIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-G---------GAAQRV-TFT-GS---  328 (427)
T ss_pred             eEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-C---------CceEEE-ecC-CC---
Confidence            35556666554 45566666666778999999999877764333678876532 0         011222 222 21   


Q ss_pred             cEEEEEEccCCCEEEEEeCCC---cEEEEecCCC
Q 002446          471 VIQDISFSDDSNWIMISSSRG---TSHLFAINPL  501 (921)
Q Consensus       471 ~I~sIaFSPDg~~LAsgS~Dg---TVhVWdi~~~  501 (921)
                      .....+|||||++||..+.++   .|.+||+...
T Consensus       329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            134678999999999887665   5899998764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.29  E-value=9.5e-06  Score=86.69  Aligned_cols=58  Identities=22%  Similarity=0.315  Sum_probs=54.7

Q ss_pred             cccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeC
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI  440 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi  440 (921)
                      .+++++-||.|+||..++.++++.++-|...|.+|+|+||..++|.||.|++ |-+|++
T Consensus       265 IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL  322 (323)
T KOG0322|consen  265 ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL  322 (323)
T ss_pred             EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence            4677889999999999999999999999999999999999999999999987 999986

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.26  E-value=2.3e-06  Score=99.58  Aligned_cols=144  Identities=13%  Similarity=0.249  Sum_probs=107.4

Q ss_pred             CEEEEEEc--CCEEEEEeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccceeecCceEEecCCCceecCCCcc
Q 002446          227 PIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRV  304 (921)
Q Consensus       227 ~V~sV~~S--~riLAVa~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piAlgpRwLAyas~~~~~s~~Grv  304 (921)
                      .|++|+|-  +.-|+++.++++++||...+..++++.+|.+..                   ..+||+-+          
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtV-------------------ycVAys~d----------   64 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTV-------------------YCVAYAKD----------   64 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceE-------------------EEEEEccC----------
Confidence            78888885  456777888999999999999999999986521                   12456510          


Q ss_pred             CCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCcCCcccccCCCCCCCcccCccc
Q 002446          305 NPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFP  384 (921)
Q Consensus       305 sPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~~si~sa~~~~k~~g~v~g~~~  384 (921)
                                       |+                                                          .|+
T Consensus        65 -----------------Gk----------------------------------------------------------rFA   69 (1081)
T KOG1538|consen   65 -----------------GK----------------------------------------------------------RFA   69 (1081)
T ss_pred             -----------------Cc----------------------------------------------------------eec
Confidence                             11                                                          133


Q ss_pred             ccCCCCEEEEEECCCCceEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          385 DADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       385 s~~~~G~V~IwDl~s~~~l~~~~-aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      ++..|..|.||.-.   ....++ .|+..|.||.|+|-...||||+-..  +-+|.....               .+.+.
T Consensus        70 SG~aDK~VI~W~~k---lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~qK---------------~V~K~  129 (1081)
T KOG1538|consen   70 SGSADKSVIIWTSK---LEGILKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQK---------------SVSKH  129 (1081)
T ss_pred             cCCCceeEEEeccc---ccceeeeccCCeeeEeecCchHHHhhhcchhh--ccccChhhh---------------hHHhh
Confidence            45567889999754   334455 7999999999999999999999763  778976642               11111


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 002446          464 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA  497 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWd  497 (921)
                       +  ..++|.+++|..||+|||.|-.+|||-|-+
T Consensus       130 -k--ss~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen  130 -K--SSSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             -h--hheeEEEeeecCCCcEEEEeccCceEEeec
Confidence             1  245699999999999999999999999863

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.26  E-value=3.1e-05  Score=82.07  Aligned_cols=109  Identities=12%  Similarity=0.263  Sum_probs=75.2

Q ss_pred             cCCCCEEEEEECCCCceEEEeccCCCCeEEEEE-CCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 002446          386 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF-DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ  464 (921)
Q Consensus       386 ~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaF-SPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~  464 (921)
                      ++.|+.++-||+++|+...++++|+..|.++.- +.+| .+.|+++||+ +||||+.++.+-..  -+   ...+ ..+-
T Consensus       132 AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGt-vRvWd~kt~k~v~~--ie---~yk~-~~~l  203 (325)
T KOG0649|consen  132 AGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG-QILSGAEDGT-VRVWDTKTQKHVSM--IE---PYKN-PNLL  203 (325)
T ss_pred             ecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc-ceeecCCCcc-EEEEeccccceeEE--ec---cccC-hhhc
Confidence            346899999999999999999999999999998 5555 4789999998 89999998611000  00   0000 1122


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCce
Q 002446          465 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV  505 (921)
Q Consensus       465 RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~  505 (921)
                      |-+....|-+++  -|..|+++|+.. ..-||.+.......
T Consensus       204 Rp~~g~wigala--~~edWlvCGgGp-~lslwhLrsse~t~  241 (325)
T KOG0649|consen  204 RPDWGKWIGALA--VNEDWLVCGGGP-KLSLWHLRSSESTC  241 (325)
T ss_pred             CcccCceeEEEe--ccCceEEecCCC-ceeEEeccCCCceE
Confidence            333333355554  567799888754 68899998764443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.25  E-value=7.7e-06  Score=89.86  Aligned_cols=105  Identities=17%  Similarity=0.251  Sum_probs=76.3

Q ss_pred             ccCCCCEEEEEECCCCceEEEec--cCC-CCeEEEEECCCCCEEEEEecCC---CEEEEEeCCCCCCCCCCccCCCCcee
Q 002446          385 DADNVGMVIVRDIVSKNVIAQFR--AHK-SPISALCFDPSGILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYV  458 (921)
Q Consensus       385 s~~~~G~V~IwDl~s~~~l~~~~--aH~-~pIsaLaFSPdGtlLATaS~DG---t~IrIWdi~~g~~~~~s~~~~~~~~~  458 (921)
                      ++..+|+|++||+++...++.+.  +|. .|..|++.+-.+.+++++...-   -.+.+||+...             .+
T Consensus        89 s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~-------------qq  155 (376)
T KOG1188|consen   89 SCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE-------------QQ  155 (376)
T ss_pred             EeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc-------------cc
Confidence            34568999999999877665554  666 4677777777889999886532   24889999874             01


Q ss_pred             EEEEEecccccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCCC
Q 002446          459 HLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGG  503 (921)
Q Consensus       459 ~l~~l~RG~t~a~I~sIaFSP-Dg~~LAsgS~DgTVhVWdi~~~g~  503 (921)
                      .+..+..- +.-.|++|.|.| |-..|++||.||-|-|||+....+
T Consensus       156 ~l~~~~eS-H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  156 LLRQLNES-HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             hhhhhhhh-ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            12222222 334599999999 678999999999999999986533

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.22  E-value=0.00066  Score=79.56  Aligned_cols=51  Identities=16%  Similarity=0.158  Sum_probs=35.7

Q ss_pred             cEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEe--CC--EEEEEECCCCcE
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ--AA--QVHCFDAATLEI  256 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVa~--d~--~I~IwDl~T~~~  256 (921)
                      ..|.+||+.+++......++.......++  ++.|+++.  ++  .|+++|+.+++.
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~  298 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL  298 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence            46999999999865544556555677886  46666532  33  699999988764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.22  E-value=4.1e-07  Score=108.01  Aligned_cols=96  Identities=22%  Similarity=0.383  Sum_probs=84.1

Q ss_pred             ccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR  462 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~  462 (921)
                      +.++.++-.|+||...+..+++..++|.+.|+.++.+.+..++|++|.|. +|++|.+..+              ..+ .
T Consensus       205 Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~-vIrvWrl~~~--------------~pv-s  268 (1113)
T KOG0644|consen  205 IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDK-VIRVWRLPDG--------------APV-S  268 (1113)
T ss_pred             EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCc-eEEEEecCCC--------------chH-H
Confidence            34567788999999999999999999999999999999999999999995 7999999876              222 3


Q ss_pred             EecccccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 002446          463 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       463 l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                      +-|||+.| |++|+|||--    +++.|||+++||..
T Consensus       269 vLrghtga-vtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  269 VLRGHTGA-VTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             HHhccccc-eeeeccCccc----cCCCCCceEecccc
Confidence            44898876 9999999965    88999999999986

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.22  E-value=0.00035  Score=79.96  Aligned_cols=183  Identities=15%  Similarity=0.130  Sum_probs=113.8

Q ss_pred             cEEEEEECCCCcEEEEEeCCCCEE-EEEEc--CCEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccc
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIY-SVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP  281 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s~V~-sV~~S--~riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~p  281 (921)
                      +.|.|.|..+.+.+.++.....+. .+.++  +|++.| ..++.|.++|+.+++.+.++.....               |
T Consensus        16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---------------~   80 (369)
T PF02239_consen   16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---------------P   80 (369)
T ss_dssp             TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---------------E
T ss_pred             CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---------------c
Confidence            679999999999999999765554 46666  477666 6688999999999999888875321               1


Q ss_pred             eeecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCC
Q 002446          282 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD  361 (921)
Q Consensus       282 iAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~  361 (921)
                           +-+|++.                           .|+.+           +                        
T Consensus        81 -----~~i~~s~---------------------------DG~~~-----------~------------------------   93 (369)
T PF02239_consen   81 -----RGIAVSP---------------------------DGKYV-----------Y------------------------   93 (369)
T ss_dssp             -----EEEEE-----------------------------TTTEE-----------E------------------------
T ss_pred             -----ceEEEcC---------------------------CCCEE-----------E------------------------
Confidence                 2233331                           11111           1                        


Q ss_pred             CcCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccC-------CCCeEEEEECCCCCEEEEEecCCCE
Q 002446          362 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH-------KSPISALCFDPSGILLVTASVQGHN  434 (921)
Q Consensus       362 ~~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH-------~~pIsaLaFSPdGtlLATaS~DGt~  434 (921)
                                            +....++.|.|+|..+.+++.++...       .+.+.+|..+|....++.+-.|...
T Consensus        94 ----------------------v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~  151 (369)
T PF02239_consen   94 ----------------------VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE  151 (369)
T ss_dssp             ----------------------EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred             ----------------------EEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence                                  00122478999999999999988743       3468899999999988877777443


Q ss_pred             EEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEE-eCCCcEEEEecCCCCCceee
Q 002446          435 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       435 IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsg-S~DgTVhVWdi~~~g~~~~l  507 (921)
                      |-+-|....            .......+..|.   ...+..|+||++|+.++ ..++.+-++|..+.+....+
T Consensus       152 I~vVdy~d~------------~~~~~~~i~~g~---~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  152 IWVVDYSDP------------KNLKVTTIKVGR---FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI  210 (369)
T ss_dssp             EEEEETTTS------------SCEEEEEEE--T---TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEEEEeccc------------cccceeeecccc---cccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence            545565442            112223333332   26799999999987664 56779999998876444343

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.22  E-value=2.2e-06  Score=98.30  Aligned_cols=101  Identities=15%  Similarity=0.218  Sum_probs=80.8

Q ss_pred             eEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEcc--
Q 002446          402 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--  479 (921)
Q Consensus       402 ~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSP--  479 (921)
                      ..+.+.+|++-|.||.|+.||.+||+||+|-+ +.|||....              +.++.++.||+ +.|.++.|=|  
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r-~ivWd~~~~--------------KllhsI~TgHt-aNIFsvKFvP~t  105 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTR-LIVWDPFEY--------------KLLHSISTGHT-ANIFSVKFVPYT  105 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcce-EEeecchhc--------------ceeeeeecccc-cceeEEeeeccC
Confidence            34678999999999999999999999999965 899998753              56677778876 5699999987  


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCC----------ceeecCCCCCccccc
Q 002446          480 DSNWIMISSSRGTSHLFAINPLGG----------SVNFQPTDANFTTKH  518 (921)
Q Consensus       480 Dg~~LAsgS~DgTVhVWdi~~~g~----------~~~l~~H~~~~~~~~  518 (921)
                      ..+.+++|..|..|||||+...++          ...+..|...+.+..
T Consensus       106 nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria  154 (758)
T KOG1310|consen  106 NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIA  154 (758)
T ss_pred             CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhhee
Confidence            578899999999999999985221          123466766665543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.19  E-value=1.4e-05  Score=83.30  Aligned_cols=95  Identities=11%  Similarity=0.274  Sum_probs=66.9

Q ss_pred             CEEEEEECCC-CceEEEec-cCCCCeEEEEECCCCCEEEEEe--cCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 002446          390 GMVIVRDIVS-KNVIAQFR-AHKSPISALCFDPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR  465 (921)
Q Consensus       390 G~V~IwDl~s-~~~l~~~~-aH~~pIsaLaFSPdGtlLATaS--~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~R  465 (921)
                      |...||.+.. ...+..+. ...++|.+++|+|+|+.||.+.  .++ .|.|||+..               ..++++..
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~-~v~lyd~~~---------------~~i~~~~~  100 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPA-KVTLYDVKG---------------KKIFSFGT  100 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCc-ccEEEcCcc---------------cEeEeecC
Confidence            4455555532 23445554 3346899999999999987664  344 499999963               35566643


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCC---CcEEEEecCCCCCc
Q 002446          466 GLTNAVIQDISFSDDSNWIMISSSR---GTSHLFAINPLGGS  504 (921)
Q Consensus       466 G~t~a~I~sIaFSPDg~~LAsgS~D---gTVhVWdi~~~g~~  504 (921)
                          ..+..|.|||+|++||+++.+   |.+.+||+......
T Consensus       101 ----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i  138 (194)
T PF08662_consen  101 ----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI  138 (194)
T ss_pred             ----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence                247889999999999998754   66999999865433

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.17  E-value=0.0016  Score=72.58  Aligned_cols=106  Identities=13%  Similarity=0.220  Sum_probs=71.0

Q ss_pred             CCEEEEEECCCC-ceEEEeccC---------CCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 002446          389 VGMVIVRDIVSK-NVIAQFRAH---------KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV  458 (921)
Q Consensus       389 ~G~V~IwDl~s~-~~l~~~~aH---------~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~  458 (921)
                      +++|.+|+.... ..+..++.+         .....+|..+|||++|..+..--..|-+|.+.+.            . .
T Consensus       212 ~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~------------~-g  278 (346)
T COG2706         212 NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD------------G-G  278 (346)
T ss_pred             CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC------------C-C
Confidence            456777776652 222333322         2467889999999999987765567899999875            0 1


Q ss_pred             EEEEEeccccccc-EEEEEEccCCCEEEEEeCCC-cEEEEecCCCCCceee
Q 002446          459 HLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRG-TSHLFAINPLGGSVNF  507 (921)
Q Consensus       459 ~l~~l~RG~t~a~-I~sIaFSPDg~~LAsgS~Dg-TVhVWdi~~~g~~~~l  507 (921)
                      +|--+.+-.+... -.+..|+|++++|+++..++ +++||.+++..+....
T Consensus       279 ~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         279 KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence            1222222222232 57899999999999888754 7999999987776554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.16  E-value=2.5e-05  Score=90.36  Aligned_cols=57  Identities=23%  Similarity=0.402  Sum_probs=53.1

Q ss_pred             ccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCC
Q 002446          385 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP  442 (921)
Q Consensus       385 s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~  442 (921)
                      ....+++|+++|..++.+++...+|...+++++|.|+|-+|++++.||. +++|.+..
T Consensus       506 ~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~  562 (577)
T KOG0642|consen  506 TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDV  562 (577)
T ss_pred             ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccc
Confidence            4567899999999999999999999999999999999999999999997 89998864

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.11  E-value=0.0015  Score=76.25  Aligned_cols=93  Identities=15%  Similarity=0.169  Sum_probs=57.4

Q ss_pred             EEEEECCC-CceEEEeccCCCCeEEEEECCCCCEEEEEecCC--CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          392 VIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       392 V~IwDl~s-~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DG--t~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      |.++++.. +.....+..+...+...+|||||++||.++.++  ..|.+||+..+            ...   .+..+  
T Consensus       307 ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g------------~~~---~Lt~~--  369 (428)
T PRK01029        307 IYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG------------RDY---QLTTS--  369 (428)
T ss_pred             EEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC------------CeE---EccCC--
Confidence            44444432 222344445556777899999999998776542  35889998765            112   22222  


Q ss_pred             cccEEEEEEccCCCEEEEEeC-C--CcEEEEecCCC
Q 002446          469 NAVIQDISFSDDSNWIMISSS-R--GTSHLFAINPL  501 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~-D--gTVhVWdi~~~  501 (921)
                      ...+.+.+|+|||++|+..+. +  ..+.++++...
T Consensus       370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            123678999999999986543 3  34666666543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.10  E-value=2.7e-05  Score=88.94  Aligned_cols=105  Identities=21%  Similarity=0.358  Sum_probs=78.3

Q ss_pred             CCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc
Q 002446          387 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG  466 (921)
Q Consensus       387 ~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG  466 (921)
                      ..+|.|.|.|..+.+++..+.....+-..++|+|||++|.+++.||. |.++|+.+.              +.+.+++-|
T Consensus        13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~-vsviD~~~~--------------~~v~~i~~G   77 (369)
T PF02239_consen   13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGT-VSVIDLATG--------------KVVATIKVG   77 (369)
T ss_dssp             GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSE-EEEEETTSS--------------SEEEEEE-S
T ss_pred             cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCe-EEEEECCcc--------------cEEEEEecC
Confidence            45689999999999999999976555556889999999999999986 899999986              456677656


Q ss_pred             cccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCCceeecC
Q 002446          467 LTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQP  509 (921)
Q Consensus       467 ~t~a~I~sIaFSPDg~~LAsgS-~DgTVhVWdi~~~g~~~~l~~  509 (921)
                      ..   -.++++|+||+|++++. ..+++.|+|..+......+..
T Consensus        78 ~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~  118 (369)
T PF02239_consen   78 GN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT  118 (369)
T ss_dssp             SE---EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred             CC---cceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence            43   57899999999999876 689999999988755555543

...

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=0.00016  Score=80.36  Aligned_cols=102  Identities=17%  Similarity=0.255  Sum_probs=74.2

Q ss_pred             CCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          389 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       389 ~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      +..|+|||..++..+....---+.++-|.|||||.+|..|.-|+. ++||+....  +.          ..-+.+-    
T Consensus       217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav-frlw~e~q~--wt----------~erw~lg----  279 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV-FRLWQENQS--WT----------KERWILG----  279 (445)
T ss_pred             cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce-eeeehhccc--ce----------ecceecc----
Confidence            357999999998876555455678999999999999999999986 999965542  00          1112232    


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 002446          469 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ  508 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~  508 (921)
                      ...|+.-+|+|+|++|..+.. |.-+||.+.-.++...+.
T Consensus       280 sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~  318 (445)
T KOG2139|consen  280 SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFL  318 (445)
T ss_pred             CCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcccc
Confidence            236999999999999987765 455688887655554443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.06  E-value=0.00011  Score=87.52  Aligned_cols=107  Identities=14%  Similarity=0.104  Sum_probs=73.8

Q ss_pred             cccccCCCCEEEEEE---CCCC-----ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCC
Q 002446          382 HFPDADNVGMVIVRD---IVSK-----NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA  453 (921)
Q Consensus       382 ~~~s~~~~G~V~IwD---l~s~-----~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~  453 (921)
                      +|+-+...|.|.--.   ....     +.+..+..|.++|.++.|+|=+..+..++.|.+ ++||.-...          
T Consensus       362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~----------  430 (555)
T KOG1587|consen  362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVI----------  430 (555)
T ss_pred             eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCC----------
Confidence            344455667776622   2211     335577789999999999998887666666876 899987632          


Q ss_pred             CCceeEEEEEecccccccEEEEEEccC-CCEEEEEeCCCcEEEEecCCCCCc
Q 002446          454 GTSYVHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGS  504 (921)
Q Consensus       454 ~~~~~~l~~l~RG~t~a~I~sIaFSPD-g~~LAsgS~DgTVhVWdi~~~g~~  504 (921)
                         ...++.+.+-  ...|++++|||- ...||++..||++.|||+......
T Consensus       431 ---~~Pl~~~~~~--~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~  477 (555)
T KOG1587|consen  431 ---ASPLLSLDSS--PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE  477 (555)
T ss_pred             ---CCcchhhhhc--cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence               1223344332  234999999996 467889999999999999764333

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.02  E-value=0.00043  Score=79.02  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=61.9

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCC-C-EEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-H-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DG-t-~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      ..|.+||+.++.. ..+..|.......+|+|||+.|+.++.++ . .|.++|+..+            ...   .+..+ 
T Consensus       258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~------------~~~---~l~~~-  320 (417)
T TIGR02800       258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG------------EVR---RLTFR-  320 (417)
T ss_pred             ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC------------CEE---EeecC-
Confidence            3588889887754 44555555566789999999988777643 2 3555565543            111   22211 


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCC---cEEEEecCC
Q 002446          468 TNAVIQDISFSDDSNWIMISSSRG---TSHLFAINP  500 (921)
Q Consensus       468 t~a~I~sIaFSPDg~~LAsgS~Dg---TVhVWdi~~  500 (921)
                       ...+..++|||||++|+.++.++   .|.+||+..
T Consensus       321 -~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       321 -GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             -CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence             12366789999999999998876   677777765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=0.00035  Score=78.27  Aligned_cols=80  Identities=15%  Similarity=0.227  Sum_probs=62.3

Q ss_pred             CCCCEEEEEECCCCceEEE-eccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 002446          387 DNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR  465 (921)
Q Consensus       387 ~~~G~V~IwDl~s~~~l~~-~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~R  465 (921)
                      +.-|.+..+|+..++.+.. |++-++.|++|-..|.+.+||+|+-|. .+||||+.+.              ..++..+ 
T Consensus       266 n~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDR-yvRIhD~ktr--------------kll~kvY-  329 (412)
T KOG3881|consen  266 NTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDR-YVRIHDIKTR--------------KLLHKVY-  329 (412)
T ss_pred             cccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccce-eEEEeecccc--------------hhhhhhh-
Confidence            4457888999999988877 889999999999999999999999995 5999999984              2333332 


Q ss_pred             ccccccEEEEEEccCCCEE
Q 002446          466 GLTNAVIQDISFSDDSNWI  484 (921)
Q Consensus       466 G~t~a~I~sIaFSPDg~~L  484 (921)
                        -.+.+++|-+.++-.+.
T Consensus       330 --vKs~lt~il~~~~~n~e  346 (412)
T KOG3881|consen  330 --VKSRLTFILLRDDVNIE  346 (412)
T ss_pred             --hhccccEEEecCCcccc
Confidence              22347788887765543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.86  E-value=0.0021  Score=74.38  Aligned_cols=93  Identities=15%  Similarity=0.171  Sum_probs=59.3

Q ss_pred             EEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       391 ~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~D-Gt-~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      .|.+||+.+++. ..+..+........|+|||+.|+..+.. |. .|.++|+..+            ....+ .. .+. 
T Consensus       268 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g------------~~~~l-t~-~~~-  331 (430)
T PRK00178        268 EIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG------------RAERV-TF-VGN-  331 (430)
T ss_pred             eEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC------------CEEEe-ec-CCC-
Confidence            588889988765 3455566666778999999988877654 32 3555566543            12222 21 121 


Q ss_pred             cccEEEEEEccCCCEEEEEeCC-C--cEEEEecCCC
Q 002446          469 NAVIQDISFSDDSNWIMISSSR-G--TSHLFAINPL  501 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~D-g--TVhVWdi~~~  501 (921)
                        .....+|||||++|+..+.+ +  .|.+||+.+.
T Consensus       332 --~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        332 --YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             --CccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence              13457899999999988754 3  3666776553

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=97.85  E-value=0.00023  Score=78.12  Aligned_cols=111  Identities=15%  Similarity=0.142  Sum_probs=76.9

Q ss_pred             CCCEEEEEEC-CCCce--EEEecc-----CCCCeEEEEECC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCcee
Q 002446          388 NVGMVIVRDI-VSKNV--IAQFRA-----HKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV  458 (921)
Q Consensus       388 ~~G~V~IwDl-~s~~~--l~~~~a-----H~~pIsaLaFSP-dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~  458 (921)
                      ....|+|+|+ ..|+.  +.....     ..+-|+|++|+| +.++||.++.-.+ +-|+.-...              .
T Consensus       177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~-~giy~~~~~--------------~  241 (406)
T KOG2919|consen  177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQR-VGIYNDDGR--------------R  241 (406)
T ss_pred             ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccce-eeeEecCCC--------------C
Confidence            3456888887 33332  111122     367799999999 5668998887644 677765543              3


Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeC-CCcEEEEecCCCCCce-eecCCCCCcc
Q 002446          459 HLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSV-NFQPTDANFT  515 (921)
Q Consensus       459 ~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~-DgTVhVWdi~~~g~~~-~l~~H~~~~~  515 (921)
                      .++.|. |+.. -|+-+.|.+||+.|.+|+. |-.|-.|||...+.++ .+..|.+.++
T Consensus       242 pl~llg-gh~g-GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TN  298 (406)
T KOG2919|consen  242 PLQLLG-GHGG-GVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTN  298 (406)
T ss_pred             ceeeec-ccCC-CeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCcc
Confidence            445553 5443 3999999999999999886 6689999999877664 7788865443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.85  E-value=0.0011  Score=77.64  Aligned_cols=92  Identities=18%  Similarity=0.302  Sum_probs=58.3

Q ss_pred             EEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEE--eCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF--KIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       391 ~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIW--di~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      .|.++|+.+++. ..+..|.......+|+|||+.|+..+..+....||  |+.++            ....+ ++ .+..
T Consensus       287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g------------~~~~L-t~-~g~~  351 (448)
T PRK04792        287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG------------KVSRL-TF-EGEQ  351 (448)
T ss_pred             EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC------------CEEEE-ec-CCCC
Confidence            588889887764 45555666677889999999988776543224455  55443            11222 11 2221


Q ss_pred             cccEEEEEEccCCCEEEEEeC-CCcEEEEecCC
Q 002446          469 NAVIQDISFSDDSNWIMISSS-RGTSHLFAINP  500 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~-DgTVhVWdi~~  500 (921)
                         ....+|||||++|+..+. ++..+||-+..
T Consensus       352 ---~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl  381 (448)
T PRK04792        352 ---NLGGSITPDGRSMIMVNRTNGKFNIARQDL  381 (448)
T ss_pred             ---CcCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence               345799999999988765 45566665543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.84  E-value=5.1e-05  Score=92.87  Aligned_cols=94  Identities=17%  Similarity=0.196  Sum_probs=75.2

Q ss_pred             CCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          388 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      .-|.|.+|+....+.-..+.+|.+.|-++.|+-||+++||+|+|-+ ||+|++.+.....             ... -||
T Consensus       153 v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~-------------~~~-fgH  217 (967)
T KOG0974|consen  153 VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLG-------------CTG-FGH  217 (967)
T ss_pred             ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccC-------------ccc-ccc
Confidence            3478999998744433368899999999999999999999999965 9999999861110             011 244


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 002446          468 TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       468 t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                       +|+|+.++|.|.  .+++++.|-|.++|+.+
T Consensus       218 -saRvw~~~~~~n--~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  218 -SARVWACCFLPN--RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             -cceeEEEEeccc--eeEEeccceEEEEEecc
Confidence             578999999999  99999999999999543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.80  E-value=0.021  Score=66.59  Aligned_cols=50  Identities=12%  Similarity=0.140  Sum_probs=37.7

Q ss_pred             EEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeC----CEEEEEECCCCcE
Q 002446          207 VVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQA----AQVHCFDAATLEI  256 (921)
Q Consensus       207 tVrIWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVa~d----~~I~IwDl~T~~~  256 (921)
                      .|.++|+.+|+......++..+....++  ++.|++...    ..|+++|+.+++.
T Consensus       214 ~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~  269 (419)
T PRK04043        214 TLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL  269 (419)
T ss_pred             EEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence            5899999999877766777777777786  456665432    4899999988763

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.78  E-value=0.0005  Score=80.27  Aligned_cols=111  Identities=9%  Similarity=0.116  Sum_probs=92.1

Q ss_pred             cCCCCEEEEEECCCCceEEEec--cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          386 ADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       386 ~~~~G~V~IwDl~s~~~l~~~~--aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      +...|.|.+|++..+++-..|.  .|.++|.++..+.+-..|-+++.|++ +-.|+....              .++...
T Consensus        76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~-v~~~~~~~~--------------~~~~~~  140 (541)
T KOG4547|consen   76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLK-VVYILEKEK--------------VIIRIW  140 (541)
T ss_pred             ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCcee-EEEEecccc--------------eeeeee
Confidence            3456899999999999988887  89999999999999999999999987 889998874              343333


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 002446          464 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~  515 (921)
                      . +.+ -.+.+++.+|||+.++++|  ++|++||+++..-...|.+|.+.+.
T Consensus       141 ~-~~~-~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~  188 (541)
T KOG4547|consen  141 K-EQK-PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVR  188 (541)
T ss_pred             c-cCC-CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceE
Confidence            2 222 3489999999999999997  5899999999888889999977654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.77  E-value=8.6e-05  Score=56.38  Aligned_cols=37  Identities=30%  Similarity=0.516  Sum_probs=30.9

Q ss_pred             EEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 002446          459 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA  497 (921)
Q Consensus       459 ~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWd  497 (921)
                      .+.++ +|+. ..|++|+|+|++++||+++.|++|+|||
T Consensus         3 ~~~~~-~~h~-~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTF-RGHS-SSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEE-ESSS-SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEE-cCCC-CcEEEEEEecccccceeeCCCCEEEEEC
Confidence            34455 4654 3599999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.77  E-value=6.8e-05  Score=83.11  Aligned_cols=77  Identities=23%  Similarity=0.391  Sum_probs=62.8

Q ss_pred             eccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEE
Q 002446          406 FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIM  485 (921)
Q Consensus       406 ~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LA  485 (921)
                      -++| .+|++|++++||+.|+|||.+...|.|||..++            ....+.  .+|..  -+.-+.|||||.+|.
T Consensus       192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg------------~~~pL~--~~glg--g~slLkwSPdgd~lf  254 (445)
T KOG2139|consen  192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG------------QKIPLI--PKGLG--GFSLLKWSPDGDVLF  254 (445)
T ss_pred             CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC------------Cccccc--ccCCC--ceeeEEEcCCCCEEE
Confidence            3466 699999999999999999998888999999987            222332  23322  378899999999999


Q ss_pred             EEeCCCcEEEEecC
Q 002446          486 ISSSRGTSHLFAIN  499 (921)
Q Consensus       486 sgS~DgTVhVWdi~  499 (921)
                      .++-|++.+||..+
T Consensus       255 aAt~davfrlw~e~  268 (445)
T KOG2139|consen  255 AATCDAVFRLWQEN  268 (445)
T ss_pred             Eecccceeeeehhc
Confidence            99999999999654

>KOG4415 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=1.6e-05  Score=80.83  Aligned_cols=32  Identities=22%  Similarity=0.457  Sum_probs=29.9

Q ss_pred             eeeeeeEEeecCC-CcccccCCeeEEEEeecCc
Q 002446          724 LYISEAELQMHPP-RIPLWAKPQIYFQSMMIKD  755 (921)
Q Consensus       724 ~ylSnaEvq~h~~-~~plW~~~qi~F~~m~~~~  755 (921)
                      .||++|||.||.+ ||+|||+|||.|+.+...+
T Consensus        28 eWl~hVEi~Th~gPHRriWmGPQFef~eih~d~   60 (247)
T KOG4415|consen   28 EWLPHVEIRTHLGPHRRIWMGPQFEFFEIHEDD   60 (247)
T ss_pred             ccccceEEEeccCccceeeecCceeEEEecCCC
Confidence            7999999999999 9999999999999998654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.71  E-value=0.0044  Score=77.61  Aligned_cols=108  Identities=15%  Similarity=0.194  Sum_probs=66.5

Q ss_pred             CCCEEEEEECCCCceEEEec-cCCCCeEEEEECCCC---CEEEEEec-CCCEEEEEeCCCCCC----CCC-CccCCCCce
Q 002446          388 NVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSG---ILLVTASV-QGHNINIFKIIPGIL----GTS-SACDAGTSY  457 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~l~~~~-aH~~pIsaLaFSPdG---tlLATaS~-DGt~IrIWdi~~g~~----~~~-s~~~~~~~~  457 (921)
                      ..|++.+||+.=+.++.... +|..+|..|+..|--   ...++++. -.+-+-+|++.++..    +.+ .+.    . 
T Consensus      1215 s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p----~- 1289 (1431)
T KOG1240|consen 1215 SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAP----I- 1289 (1431)
T ss_pred             CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCc----c-
Confidence            35789999999888887766 556889888877742   46666655 233489999988721    000 000    0 


Q ss_pred             eEEEEEe----c-ccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 002446          458 VHLYRLQ----R-GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG  502 (921)
Q Consensus       458 ~~l~~l~----R-G~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g  502 (921)
                       .-+.+.    | -..-+ ....++.--+.++.+|+.|+.|+.||.....
T Consensus      1290 -ls~~~Ps~~~~kp~~~~-~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1290 -LSYALPSNDARKPDSLA-GISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             -hhhhcccccCCCCCccc-ceeeecccCCceeeecCCccceeeccCCCcc
Confidence             000000    0 00111 2334565667789999999999999997653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.71  E-value=0.00039  Score=80.89  Aligned_cols=188  Identities=16%  Similarity=0.246  Sum_probs=124.4

Q ss_pred             EEEEEECCCCcEEEEEeCC-CCEEEEEEc--CCEEEEE-eCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCccccce
Q 002446          207 VVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL  282 (921)
Q Consensus       207 tVrIWDL~Tg~~V~tL~f~-s~V~sV~~S--~riLAVa-~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~pi  282 (921)
                      .|.-.+|..|..+..++.. +.+..|.+|  ..+||++ .++.|.+||.++-....+|.....+...|+.       + -
T Consensus       156 evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~-------~-~  227 (703)
T KOG2321|consen  156 EVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG-------D-A  227 (703)
T ss_pred             ceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccc-------c-c
Confidence            4666699999999988875 688888888  4788884 4889999999988776666532221111100       0 0


Q ss_pred             eecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCC
Q 002446          283 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS  362 (921)
Q Consensus       283 AlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~  362 (921)
                      +.++.-|.|..+                                                                    
T Consensus       228 ~~svTal~F~d~--------------------------------------------------------------------  239 (703)
T KOG2321|consen  228 APSVTALKFRDD--------------------------------------------------------------------  239 (703)
T ss_pred             cCcceEEEecCC--------------------------------------------------------------------
Confidence            000001111100                                                                    


Q ss_pred             cCCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCC--CCeEEEEECCCC--CEEEEEecCCCEEEEE
Q 002446          363 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK--SPISALCFDPSG--ILLVTASVQGHNINIF  438 (921)
Q Consensus       363 ~~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~--~pIsaLaFSPdG--tlLATaS~DGt~IrIW  438 (921)
                                    |+   +++-+...|.|.|||+.+.+++ ..+.|.  -||..+.|.+.+  ..|+|  .|.++++||
T Consensus       240 --------------gL---~~aVGts~G~v~iyDLRa~~pl-~~kdh~~e~pi~~l~~~~~~~q~~v~S--~Dk~~~kiW  299 (703)
T KOG2321|consen  240 --------------GL---HVAVGTSTGSVLIYDLRASKPL-LVKDHGYELPIKKLDWQDTDQQNKVVS--MDKRILKIW  299 (703)
T ss_pred             --------------ce---eEEeeccCCcEEEEEcccCCce-eecccCCccceeeecccccCCCceEEe--cchHHhhhc
Confidence                          00   1222345689999999998876 345554  689999998874  45555  455679999


Q ss_pred             eCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          439 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       439 di~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                      |-.++.              ....+   .....|.++||=|++-+|.++-....++.|=|..-|..+.+
T Consensus       300 d~~~Gk--------------~~asi---Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrW  351 (703)
T KOG2321|consen  300 DECTGK--------------PMASI---EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRW  351 (703)
T ss_pred             ccccCC--------------ceeec---cccCCcCceeeecCCceEEEecCCCcceeEEccccCCCchh
Confidence            988761              11111   12234999999999999999999999999988777666554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.70  E-value=0.0027  Score=74.16  Aligned_cols=110  Identities=16%  Similarity=0.263  Sum_probs=77.7

Q ss_pred             cccCCCCEEEEEECCCCceEEEecc------CCC-----CeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccC
Q 002446          384 PDADNVGMVIVRDIVSKNVIAQFRA------HKS-----PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD  452 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~~~l~~~~a------H~~-----pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~  452 (921)
                      +.+..+|.|..||...+..+.++..      |.+     .|++|+|+.||-.++.|...|. +-|||+...         
T Consensus       191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~---------  260 (703)
T KOG2321|consen  191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRAS---------  260 (703)
T ss_pred             EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccC---------
Confidence            3345678999999998877666653      333     4999999999999999999998 899999874         


Q ss_pred             CCCceeEEEEEecccccccEEEEEEccC-CCEEEEEeCCCcEEEEecCCCCCceeecC
Q 002446          453 AGTSYVHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGSVNFQP  509 (921)
Q Consensus       453 ~~~~~~~l~~l~RG~t~a~I~sIaFSPD-g~~LAsgS~DgTVhVWdi~~~g~~~~l~~  509 (921)
                           ..+..-..+ ..-+|..+.|-+. .+--+++.+..+++|||-.++.....+..
T Consensus       261 -----~pl~~kdh~-~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp  312 (703)
T KOG2321|consen  261 -----KPLLVKDHG-YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP  312 (703)
T ss_pred             -----CceeecccC-CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc
Confidence                 112111112 2235899999664 33333444566899999988877666654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.67  E-value=5.2e-05  Score=88.79  Aligned_cols=89  Identities=16%  Similarity=0.222  Sum_probs=72.2

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccccc
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN  469 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~  469 (921)
                      ..+.|||...|..+.++++|+..|.|++++.||+++|+++.|. .+.||.-.-.                 -.|+..|+.
T Consensus        33 ~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK-~VI~W~~klE-----------------G~LkYSH~D   94 (1081)
T KOG1538|consen   33 SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADK-SVIIWTSKLE-----------------GILKYSHND   94 (1081)
T ss_pred             CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCce-eEEEeccccc-----------------ceeeeccCC
Confidence            5799999999999999999999999999999999999999996 5889975532                 123333433


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 002446          470 AVIQDISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       470 a~I~sIaFSPDg~~LAsgS~DgTVhVWdi  498 (921)
                       .|+|++|.|-+..||+++... .-+|..
T Consensus        95 -~IQCMsFNP~~h~LasCsLsd-FglWS~  121 (1081)
T KOG1538|consen   95 -AIQCMSFNPITHQLASCSLSD-FGLWSP  121 (1081)
T ss_pred             -eeeEeecCchHHHhhhcchhh-ccccCh
Confidence             499999999999999987642 445644

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.65  E-value=0.0036  Score=73.04  Aligned_cols=77  Identities=18%  Similarity=0.140  Sum_probs=47.5

Q ss_pred             CCeEEEEECCCCCEEEEEec-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 002446          411 SPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS  489 (921)
Q Consensus       411 ~pIsaLaFSPdGtlLATaS~-DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~  489 (921)
                      ......+|||||+.||..+. +|+ .+||.+.....+           .....+..+  ...+...+|||||++||..+.
T Consensus       281 ~~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~~~g-----------~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~~  346 (428)
T PRK01029        281 GTQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQIDPEG-----------QSPRLLTKK--YRNSSCPAWSPDGKKIAFCSV  346 (428)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCC-ceEEEEECcccc-----------cceEEeccC--CCCccceeECCCCCEEEEEEc
Confidence            34466899999998887764 554 566654321000           011122111  123678899999999998765


Q ss_pred             C---CcEEEEecCCC
Q 002446          490 R---GTSHLFAINPL  501 (921)
Q Consensus       490 D---gTVhVWdi~~~  501 (921)
                      +   ..|++||+..+
T Consensus       347 ~~g~~~I~v~dl~~g  361 (428)
T PRK01029        347 IKGVRQICVYDLATG  361 (428)
T ss_pred             CCCCcEEEEEECCCC
Confidence            4   35788888654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.60  E-value=0.00014  Score=81.59  Aligned_cols=103  Identities=16%  Similarity=0.148  Sum_probs=76.2

Q ss_pred             CCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc
Q 002446          387 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG  466 (921)
Q Consensus       387 ~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG  466 (921)
                      +.+..+.+|....+. ...+-+|-+-++.|+|+||++++.||+.|++ |||=...-.              .-+..+--|
T Consensus       129 gD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~--------------f~IesfclG  192 (390)
T KOG3914|consen  129 GDVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPAT--------------FVIESFCLG  192 (390)
T ss_pred             CCceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcc--------------cchhhhccc
Confidence            344667777766643 3566799999999999999999999999997 888654421              122334446


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          467 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       467 ~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                      |+. -|..|+.-++ +.|+++|.|+|+++||+..+....++
T Consensus       193 H~e-FVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  193 HKE-FVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             cHh-heeeeeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence            654 3888887654 66999999999999999998776443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.60  E-value=0.00074  Score=74.38  Aligned_cols=93  Identities=14%  Similarity=0.266  Sum_probs=65.0

Q ss_pred             CCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecC-----------------------------------
Q 002446          387 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-----------------------------------  431 (921)
Q Consensus       387 ~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~D-----------------------------------  431 (921)
                      +.+-.|.||.+-+.+.. .++--+..+..++|+|||++.|.++..                                   
T Consensus       111 eF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd  189 (447)
T KOG4497|consen  111 EFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD  189 (447)
T ss_pred             cceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence            44567889998877653 333334456788999999998888642                                   


Q ss_pred             CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 002446          432 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA  497 (921)
Q Consensus       432 Gt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWd  497 (921)
                      |..+-|||.--.              ..+|..+||..   |..++|||.+++||+|+.|+.+||-+
T Consensus       190 g~~laVwd~~Le--------------ykv~aYe~~lG---~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  190 GNWLAVWDNVLE--------------YKVYAYERGLG---LKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             CcEEEEecchhh--------------heeeeeeeccc---eeEEEeccccceEEeeccchhhhhhc
Confidence            333444443221              24556667653   88999999999999999999999854

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.57  E-value=0.014  Score=67.09  Aligned_cols=51  Identities=14%  Similarity=0.166  Sum_probs=41.0

Q ss_pred             cEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCC-EEEEEECCCCcE
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAA-QVHCFDAATLEI  256 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVa~d~-~I~IwDl~T~~~  256 (921)
                      -.|-|||..+++..+..+-=+.|.+|..+  ++.++|+.++ +|.++|+.++..
T Consensus       382 D~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         382 DKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             ceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            36889999999866655556889999996  5778887665 999999999864

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.56  E-value=0.059  Score=69.81  Aligned_cols=81  Identities=10%  Similarity=0.109  Sum_probs=53.2

Q ss_pred             EEEEECCCCCEEEEEecCCCEEEEEeCCCCCC----CCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 002446          414 SALCFDPSGILLVTASVQGHNINIFKIIPGIL----GTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS  489 (921)
Q Consensus       414 saLaFSPdGtlLATaS~DGt~IrIWdi~~g~~----~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~  489 (921)
                      ..|+|+++|.++++-+.+++ |++||..++..    +.. ..+.. ....   + .+. -.....|++++||+.+++-+.
T Consensus       807 ~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G-~~G~~-dG~~---~-~a~-l~~P~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTG-KAGFK-DGKA---L-KAQ-LSEPAGLALGENGRLFVADTN  878 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccC-CcCCC-CCcc---c-ccc-cCCceEEEEeCCCCEEEEECC
Confidence            47899999998777766654 99999876510    000 00000 0000   0 000 013678999999999999999


Q ss_pred             CCcEEEEecCCCC
Q 002446          490 RGTSHLFAINPLG  502 (921)
Q Consensus       490 DgTVhVWdi~~~g  502 (921)
                      +++|++||+.+..
T Consensus       879 Nn~Irvid~~~~~  891 (1057)
T PLN02919        879 NSLIRYLDLNKGE  891 (1057)
T ss_pred             CCEEEEEECCCCc
Confidence            9999999998753

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.55  E-value=0.0069  Score=71.11  Aligned_cols=97  Identities=21%  Similarity=0.346  Sum_probs=76.7

Q ss_pred             ccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 002446          385 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ  464 (921)
Q Consensus       385 s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~  464 (921)
                      +.+.+++|..|+...++.++.+++-+..+.+++.+|||++|++||..   |++||+.+.              +.+.+| 
T Consensus       119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~---ik~~~~~~k--------------evv~~f-  180 (541)
T KOG4547|consen  119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASRQ---IKVLDIETK--------------EVVITF-  180 (541)
T ss_pred             ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccce---EEEEEccCc--------------eEEEEe-
Confidence            44667899999999999999999999999999999999999999853   999999985              333333 


Q ss_pred             cccccccEEEEEEccC-----CCEEEEE-eCCCcEEEEecCC
Q 002446          465 RGLTNAVIQDISFSDD-----SNWIMIS-SSRGTSHLFAINP  500 (921)
Q Consensus       465 RG~t~a~I~sIaFSPD-----g~~LAsg-S~DgTVhVWdi~~  500 (921)
                      .|| ...|.+++|--+     |+||.++ -.+.-+-+|-+..
T Consensus       181 tgh-~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  181 TGH-GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cCC-CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            565 456999999877     6666543 3455567777655

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.55  E-value=0.00086  Score=82.54  Aligned_cols=101  Identities=17%  Similarity=0.209  Sum_probs=80.4

Q ss_pred             ccCCCCEEEEEECCCCceEE-EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          385 DADNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       385 s~~~~G~V~IwDl~s~~~l~-~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      +...|..+++|++++.+.+. +.=+|+..|..++|.|+  +|+|++.|-| .++|+..-.             ....|+-
T Consensus       192 s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~~~~-------------~l~~y~~  255 (967)
T KOG0974|consen  192 SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGVNGT-------------QLEVYDE  255 (967)
T ss_pred             EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEecccc-------------eehhhhh
Confidence            34567889999999988766 56699999999999999  9999999976 899965432             1223443


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc
Q 002446          464 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS  504 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~  504 (921)
                      ++|   .-|+.++..++..++.+++.|+++++|++..-+..
T Consensus       256 h~g---~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e  293 (967)
T KOG0974|consen  256 HSG---KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE  293 (967)
T ss_pred             hhh---cceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence            333   34999999999999999999999999999765443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.55  E-value=0.053  Score=61.32  Aligned_cols=54  Identities=19%  Similarity=0.323  Sum_probs=38.1

Q ss_pred             CCEEEEEECC--CC--ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCC
Q 002446          389 VGMVIVRDIV--SK--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP  442 (921)
Q Consensus       389 ~G~V~IwDl~--s~--~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~  442 (921)
                      ...|.+|++.  ++  +.+..+.....--..++|+|||++|+.+..+...|.+|++..
T Consensus       266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            4567888873  23  334444443344688999999999999998887899998864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.53  E-value=0.0016  Score=81.36  Aligned_cols=96  Identities=14%  Similarity=0.284  Sum_probs=73.6

Q ss_pred             EECCCCceEEEeccCCCCeEEEEECCCC-CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEE
Q 002446          395 RDIVSKNVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ  473 (921)
Q Consensus       395 wDl~s~~~l~~~~aH~~pIsaLaFSPdG-tlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~  473 (921)
                      |.. .|..++++..|...|..++.++.- .+++|||.||+ ||||++..- .+...    .....+.|..    ...++.
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~-~~~~~----s~rS~ltys~----~~sr~~ 1102 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKL-EGEGG----SARSELTYSP----EGSRVE 1102 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhh-hcCcc----eeeeeEEEec----cCCceE
Confidence            443 367889999999999999888764 99999999998 999999864 11100    0112333333    223589


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          474 DISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       474 sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      .+.+.+.|..+|+++.||.|+++++..+
T Consensus      1103 ~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1103 KVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred             EEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence            9999999999999999999999999886

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.51  E-value=0.0081  Score=66.82  Aligned_cols=80  Identities=16%  Similarity=0.213  Sum_probs=56.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec-----------ccccccEEEEEE
Q 002446          409 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR-----------GLTNAVIQDISF  477 (921)
Q Consensus       409 H~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~R-----------G~t~a~I~sIaF  477 (921)
                      --+.|+.++|+++|+|++|-+.- + ++|||+... ..+          ...|.++.           ...-..=..++|
T Consensus       271 iIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme-~~p----------v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~  337 (433)
T KOG1354|consen  271 IISSISDVKFSHSGRYILSRDYL-T-VKLWDLNME-AKP----------VETYPVHEYLRSKLCSLYENDAIFDKFECSW  337 (433)
T ss_pred             HhhhhhceEEccCCcEEEEeccc-e-eEEEecccc-CCc----------ceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence            34689999999999999997665 4 999999543 100          11122110           000011246899


Q ss_pred             ccCCCEEEEEeCCCcEEEEecCCC
Q 002446          478 SDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       478 SPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      |-|+.++++||-..-+|||++..+
T Consensus       338 sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  338 SGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             cCCcceEecccccceEEEecCCCC
Confidence            999999999999999999997664

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.49  E-value=0.033  Score=58.24  Aligned_cols=91  Identities=15%  Similarity=0.245  Sum_probs=61.0

Q ss_pred             CCEEEEEECCCCceEEEeccCCCC----------e-EEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce
Q 002446          389 VGMVIVRDIVSKNVIAQFRAHKSP----------I-SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY  457 (921)
Q Consensus       389 ~G~V~IwDl~s~~~l~~~~aH~~p----------I-saLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~  457 (921)
                      .|.|..+|+.+|+.+.....+..+          + ..+.++ +| .+..++.+|..+.+ |+.++              
T Consensus       131 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg--------------  193 (238)
T PF13360_consen  131 SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATG--------------  193 (238)
T ss_dssp             CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTT--------------
T ss_pred             cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCC--------------
Confidence            578899999999988888765432          1 233344 55 66666777765667 99886              


Q ss_pred             eEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          458 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       458 ~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      ..+++..  ...  +.. ....++..|.+++.+++++.||+.++
T Consensus       194 ~~~w~~~--~~~--~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  194 EKLWSKP--ISG--IYS-LPSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             EEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred             CEEEEec--CCC--ccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence            3344322  111  222 25678888888889999999999885

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.45  E-value=0.063  Score=60.92  Aligned_cols=103  Identities=13%  Similarity=0.130  Sum_probs=64.8

Q ss_pred             cCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 002446          386 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR  465 (921)
Q Consensus       386 ~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~R  465 (921)
                      ...+|.+..||..+++.+......  .....  ..++..|..++.+|. +..+|..++              ..+++...
T Consensus       247 ~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p--~~~~~~vyv~~~~G~-l~~~d~~tG--------------~~~W~~~~  307 (377)
T TIGR03300       247 VSYQGRVAALDLRSGRVLWKRDAS--SYQGP--AVDDNRLYVTDADGV-VVALDRRSG--------------SELWKNDE  307 (377)
T ss_pred             EEcCCEEEEEECCCCcEEEeeccC--CccCc--eEeCCEEEEECCCCe-EEEEECCCC--------------cEEEcccc
Confidence            345789999999999887766521  11122  235667777788886 899999876              33444321


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 002446          466 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT  510 (921)
Q Consensus       466 G~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H  510 (921)
                       .......+...  .+..|.+++.+|.+++||..++...-.+..|
T Consensus       308 -~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~  349 (377)
T TIGR03300       308 -LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD  349 (377)
T ss_pred             -ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence             00111111122  4678999999999999998776444444444

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=97.45  E-value=0.0017  Score=74.67  Aligned_cols=122  Identities=16%  Similarity=0.143  Sum_probs=77.9

Q ss_pred             CCCCCCCcEEEEEEecccCCCCCCCeEEEEEccC-cEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCcccc
Q 002446           83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~-GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~  161 (921)
                      ..+.|+.-|.-+-|++   .|    .+|+.|.+. .+.|||-....-.....|.|...|.-.+|+|.           .+
T Consensus       137 kL~~H~GcVntV~FN~---~G----d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~-----------s~  198 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQ---RG----DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF-----------SG  198 (559)
T ss_pred             cccCCCCccceeeecc---cC----ceeeccCccceEEeehhhccCcccccccccccchhhhhccCC-----------CC
Confidence            5568899999999999   66    588888765 57999998754444456788878887788763           34


Q ss_pred             CCCEEEEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEEC-CCCcEEEEE---eCCCCEEEEEE---c
Q 002446          162 VRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSL-RSQSYVHML---KFRSPIYSVRC---S  234 (921)
Q Consensus       162 ~rPLLAvv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL-~Tg~~V~tL---~f~s~V~sV~~---S  234 (921)
                      .++++. |+.          |                       +.||+=.+ .++.+..+.   ++..+|.-++.   +
T Consensus       199 d~ti~~-~s~----------d-----------------------gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~s  244 (559)
T KOG1334|consen  199 DRTIVT-SSR----------D-----------------------GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDS  244 (559)
T ss_pred             CcCcee-ccc----------c-----------------------CceeeeeeccccceecceecccccCccceeeecCCC
Confidence            455442 221          2                       22333322 233333222   35677777777   3


Q ss_pred             CC-EEEEEeCCEEEEEECCCCcE
Q 002446          235 SR-VVAICQAAQVHCFDAATLEI  256 (921)
Q Consensus       235 ~r-iLAVa~d~~I~IwDl~T~~~  256 (921)
                      ++ ++..+.++.+.-+|+++...
T Consensus       245 p~~f~S~geD~~v~~~Dlr~~~p  267 (559)
T KOG1334|consen  245 PKPFLSCGEDAVVFHIDLRQDVP  267 (559)
T ss_pred             CCcccccccccceeeeeeccCCc
Confidence            44 44457778888899887653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.43  E-value=0.00096  Score=74.61  Aligned_cols=107  Identities=12%  Similarity=0.116  Sum_probs=84.3

Q ss_pred             ccccCCCCEEEEEECC------CCceEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCC
Q 002446          383 FPDADNVGMVIVRDIV------SKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT  455 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~------s~~~l~~~~-aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~  455 (921)
                      +++++.+-.++||.+.      +.+++.... .|.+.|-||+|+-..++|.++..+|+ +..-|+.+.            
T Consensus        71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~-VI~HDiEt~------------  137 (609)
T KOG4227|consen   71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT-VIKHDIETK------------  137 (609)
T ss_pred             EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce-eEeeecccc------------
Confidence            4567788899999985      345665555 45589999999999999999999998 678899874            


Q ss_pred             ceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc
Q 002446          456 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS  504 (921)
Q Consensus       456 ~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~  504 (921)
                        ..+|.+........|+.+.-+|-.+.|++.+.++-|-+||+......
T Consensus       138 --qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~  184 (609)
T KOG4227|consen  138 --QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP  184 (609)
T ss_pred             --eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence              44555533333335999999999999999999999999999875433

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.42  E-value=0.00015  Score=82.61  Aligned_cols=107  Identities=10%  Similarity=0.271  Sum_probs=89.1

Q ss_pred             ccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEE
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR  462 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~  462 (921)
                      +++++..|.++.-|+.+|+.++.|..-.+++..|+-+|-...+-+|-..|+ |.+|.-...              ..|.+
T Consensus       224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlWSP~sk--------------ePLvK  288 (545)
T KOG1272|consen  224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLWSPNSK--------------EPLVK  288 (545)
T ss_pred             eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEecCCCCc--------------chHHH
Confidence            346677899999999999999999999999999999999999999999998 899975542              12222


Q ss_pred             E--ecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 002446          463 L--QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ  508 (921)
Q Consensus       463 l--~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~  508 (921)
                      +  +||    .|.+||+.++|+|+||++.|..++|||+..+....+++
T Consensus       289 iLcH~g----~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~  332 (545)
T KOG1272|consen  289 ILCHRG----PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR  332 (545)
T ss_pred             HHhcCC----CcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence            2  333    48999999999999999999999999999887555543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.39  E-value=0.00065  Score=72.29  Aligned_cols=80  Identities=20%  Similarity=0.272  Sum_probs=64.2

Q ss_pred             CeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 002446          412 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG  491 (921)
Q Consensus       412 pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~Dg  491 (921)
                      .|++|-.+|...-|.+|+.|+. |.-||++++               .+.+..|||+.. |.+++--.-+..+.+|+.||
T Consensus       116 eINam~ldP~enSi~~AgGD~~-~y~~dlE~G---------------~i~r~~rGHtDY-vH~vv~R~~~~qilsG~EDG  178 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGV-IYQVDLEDG---------------RIQREYRGHTDY-VHSVVGRNANGQILSGAEDG  178 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeE-EEEEEecCC---------------EEEEEEcCCcce-eeeeeecccCcceeecCCCc
Confidence            6899999998888888888985 899999987               344556898865 88998844445577999999


Q ss_pred             cEEEEecCCCCCceeec
Q 002446          492 TSHLFAINPLGGSVNFQ  508 (921)
Q Consensus       492 TVhVWdi~~~g~~~~l~  508 (921)
                      |+||||..+.+....+.
T Consensus       179 tvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  179 TVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             cEEEEeccccceeEEec
Confidence            99999999876665553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.37  E-value=0.00047  Score=79.78  Aligned_cols=111  Identities=14%  Similarity=0.168  Sum_probs=82.6

Q ss_pred             ccccCCCCEEEEEECCCCceEEEec-cCCCCeEEEEECC--CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH  459 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~-aH~~pIsaLaFSP--dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~  459 (921)
                      ++++..|-.+.|||.-..+++..+. +|+..|-+++|=|  +.++++||+.|. .|+|||+.....+.      ......
T Consensus        65 L~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk-~i~lfdl~~~~~~~------~d~~~~  137 (758)
T KOG1310|consen   65 LASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK-LIKLFDLDSSKEGG------MDHGME  137 (758)
T ss_pred             EeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc-eEEEEecccccccc------cccCcc
Confidence            4577788899999999999988887 9999999999999  578999999996 59999998531000      000000


Q ss_pred             EEEEecccccccEEEEEEccCC-CEEEEEeCCCcEEEEecCC
Q 002446          460 LYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       460 l~~l~RG~t~a~I~sIaFSPDg-~~LAsgS~DgTVhVWdi~~  500 (921)
                      .-..-.+-+..+|..|+-.|++ .-|-+++.|||++-+|+..
T Consensus       138 ~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  138 ETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             chhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            0000112223357889999999 7788999999999999976

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=97.32  E-value=0.00032  Score=80.98  Aligned_cols=115  Identities=20%  Similarity=0.192  Sum_probs=79.9

Q ss_pred             cccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCC------C---------C
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI------L---------G  446 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~------~---------~  446 (921)
                      +++-+.+||.+.|.. .++++...+.+|.++|.|-.|+|||+-|+|+++||- |+||.-.--.      .         +
T Consensus        77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~-iKiWSrsGMLRStl~Q~~~~v~c~~W~  154 (737)
T KOG1524|consen   77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGV-IKIWSRSGMLRSTVVQNEESIRCARWA  154 (737)
T ss_pred             eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCce-EEEEeccchHHHHHhhcCceeEEEEEC
Confidence            445567789888876 456777889999999999999999999999999996 9999643210      0         1


Q ss_pred             CCCccCCCCceeEEE---------EEecccccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 002446          447 TSSACDAGTSYVHLY---------RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       447 ~~s~~~~~~~~~~l~---------~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi  498 (921)
                      +.|..-....+.|++         .+++.-+..-|.++.|++.+..+++|+.|-..+|||-
T Consensus       155 p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~  215 (737)
T KOG1524|consen  155 PNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA  215 (737)
T ss_pred             CCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc
Confidence            111000000011111         1122223345999999999999999999999999995

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.31  E-value=0.004  Score=71.40  Aligned_cols=104  Identities=19%  Similarity=0.284  Sum_probs=77.7

Q ss_pred             cCCCC-EEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 002446          386 ADNVG-MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ  464 (921)
Q Consensus       386 ~~~~G-~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~  464 (921)
                      +..+| .+-|||..+++. ..+...-+.|-+|+.+|||++++.|-.... |-+.|+.++            ..+.+-+-+
T Consensus       377 gt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vididng------------nv~~idkS~  442 (668)
T COG4946         377 GTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDIDNG------------NVRLIDKSE  442 (668)
T ss_pred             eccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEecCC------------CeeEecccc
Confidence            34556 899999998865 566677789999999999999999887765 677788876            233333333


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCC----cEEEEecCCCCCceeec
Q 002446          465 RGLTNAVIQDISFSDDSNWIMISSSRG----TSHLFAINPLGGSVNFQ  508 (921)
Q Consensus       465 RG~t~a~I~sIaFSPDg~~LAsgS~Dg----TVhVWdi~~~g~~~~l~  508 (921)
                      .|    -|++++|+|+++|||-+=-+|    .|||||+... ....+.
T Consensus       443 ~~----lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Kiy~vT  485 (668)
T COG4946         443 YG----LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KIYDVT  485 (668)
T ss_pred             cc----eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eEEEec
Confidence            33    399999999999999876665    6999999663 444443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=97.26  E-value=0.0036  Score=68.99  Aligned_cols=100  Identities=13%  Similarity=0.100  Sum_probs=76.3

Q ss_pred             CCCCEEEEEECCCC---ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          387 DNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       387 ~~~G~V~IwDl~s~---~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      .+...|.||.....   +..++++.|...|+.|+++|.+..|+||+.|.. -.||....+..       |    .....|
T Consensus        29 ~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-ayVw~~~~~~~-------W----kptlvL   96 (361)
T KOG1523|consen   29 PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-AYVWTQPSGGT-------W----KPTLVL   96 (361)
T ss_pred             cCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-ccccccCCCCe-------e----ccceeE
Confidence            34457888887664   478899999999999999999999999999965 79998854411       1    111222


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          464 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                      .|- .. ..++|.|||.++.||+||.-..|-||=++.
T Consensus        97 lRi-Nr-AAt~V~WsP~enkFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   97 LRI-NR-AATCVKWSPKENKFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             EEe-cc-ceeeEeecCcCceEEeccCccEEEEEEEec
Confidence            232 22 278999999999999999999999987654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=97.23  E-value=0.1  Score=61.47  Aligned_cols=100  Identities=13%  Similarity=0.251  Sum_probs=72.4

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEec-CCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~-DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      -++++++++...+.-.+. -.+||.+++|+|+|+-++.+-. -=-.+.|||+.-               ..++.+-.|-.
T Consensus       251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---------------~~v~df~egpR  314 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---------------KPVFDFPEGPR  314 (566)
T ss_pred             ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---------------CEeEeCCCCCc
Confidence            467888887444433333 3689999999999998877531 112378888763               35677765543


Q ss_pred             cccEEEEEEccCCCEEEEEeC---CCcEEEEecCCCCCceeecC
Q 002446          469 NAVIQDISFSDDSNWIMISSS---RGTSHLFAINPLGGSVNFQP  509 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~---DgTVhVWdi~~~g~~~~l~~  509 (921)
                          +++-|+|.|++|+.++-   .|.+-|||+...+....+..
T Consensus       315 ----N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a  354 (566)
T KOG2315|consen  315 ----NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA  354 (566)
T ss_pred             ----cceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc
Confidence                46889999999998875   67899999999877766644

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.19  E-value=0.0006  Score=76.18  Aligned_cols=101  Identities=15%  Similarity=0.158  Sum_probs=74.2

Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCC
Q 002446          403 IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN  482 (921)
Q Consensus       403 l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~  482 (921)
                      .+.+.+|.+-|.+|.||.+|++||++++|-+ ++||.+........        .+. ..+...++...|.|++|.-..+
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~-~~~W~~de~~~~k~--------~KP-I~~~~~~H~SNIF~L~F~~~N~  118 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMH-GRVWNVDELMVRKT--------PKP-IGVMEHPHRSNIFSLEFDLENR  118 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcce-eeeechHHHHhhcC--------CCC-ceeccCccccceEEEEEccCCe
Confidence            3456799999999999999999999999976 89999875311000        011 1222222335699999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCCceeecCCCCCc
Q 002446          483 WIMISSSRGTSHLFAINPLGGSVNFQPTDANF  514 (921)
Q Consensus       483 ~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~  514 (921)
                      +|.+|..++||.+-|+.+. +..-+..|.++-
T Consensus       119 ~~~SG~~~~~VI~HDiEt~-qsi~V~~~~~~~  149 (609)
T KOG4227|consen  119 FLYSGERWGTVIKHDIETK-QSIYVANENNNR  149 (609)
T ss_pred             eEecCCCcceeEeeecccc-eeeeeecccCcc
Confidence            9999999999999999885 344445565543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.18  E-value=0.0022  Score=75.58  Aligned_cols=91  Identities=15%  Similarity=0.204  Sum_probs=69.5

Q ss_pred             EEEEECCCCce--EEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          392 VIVRDIVSKNV--IAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       392 V~IwDl~s~~~--l~~~~-aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      -.+|++..+++  ++..+ .+.+.|.+.+++|+.+.|+.|..||. |.+||...+             ..+..+.     
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~-------------~t~~~ka-----  298 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRG-------------VTLLAKA-----  298 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCCC-------------eeeeeee-----
Confidence            34677765532  22222 67889999999999999999999997 899999875             1111111     


Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          469 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      .-....++|+|||..|++|+..|.+.+||+.-.
T Consensus       299 ~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  299 EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            123789999999999999999999999999764

>smart00320 WD40 WD40 repeats

Probab=97.18  E-value=0.001  Score=46.80  Aligned_cols=39  Identities=26%  Similarity=0.663  Sum_probs=34.8

Q ss_pred             CceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEe
Q 002446          400 KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK  439 (921)
Q Consensus       400 ~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWd  439 (921)
                      ++++..+.+|...|.+++|+|++.++++++.||+ +++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence            3566788899999999999999999999999997 89996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.16  E-value=0.0011  Score=85.08  Aligned_cols=91  Identities=19%  Similarity=0.387  Sum_probs=69.0

Q ss_pred             CCCEEEEEECCC---CceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 002446          388 NVGMVIVRDIVS---KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ  464 (921)
Q Consensus       388 ~~G~V~IwDl~s---~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~  464 (921)
                      .++.|.+||.--   ...+.  .+|.+.+++++|-|.-++|.||+.+|. |.|||+...            ..+|  +  
T Consensus      2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqr------------ql~h--~-- 2373 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQR------------QLRH--T-- 2373 (2439)
T ss_pred             CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHH------------HHHH--H--
Confidence            346788898642   23333  899999999999999999999999998 899999863            1111  1  


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          465 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       465 RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                             ++.  +. .-.+|.+++.+|+++||+++.++-...+
T Consensus      2374 -------~~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2374 -------FQA--LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             -------hhh--hh-hhheeeccCcccceEEEEccccchhhcC
Confidence                   122  23 4578999999999999999988655554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.13  E-value=0.2  Score=56.95  Aligned_cols=92  Identities=17%  Similarity=0.201  Sum_probs=57.5

Q ss_pred             cCCCCEEEEEECCCCceEEEeccCCC-CeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 002446          386 ADNVGMVIVRDIVSKNVIAQFRAHKS-PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ  464 (921)
Q Consensus       386 ~~~~G~V~IwDl~s~~~l~~~~aH~~-pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~  464 (921)
                      ...+|.|..+|..+++.+........ .......  .|.+|.+++.+|. +.+||..++              +.++++.
T Consensus       285 ~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~tG--------------~~~~~~~  347 (377)
T TIGR03300       285 TDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSREDG--------------SFVARLK  347 (377)
T ss_pred             ECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCCC--------------CEEEEEE
Confidence            35679999999999988766632111 1222222  4668888999996 899998876              3445543


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 002446          465 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA  497 (921)
Q Consensus       465 RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWd  497 (921)
                      -+.. ....+.++. |+ .|.+++.||+++.|.
T Consensus       348 ~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       348 TDGS-GIASPPVVV-GD-GLLVQTRDGDLYAFR  377 (377)
T ss_pred             cCCC-ccccCCEEE-CC-EEEEEeCCceEEEeC
Confidence            2211 111222222 33 477899999998874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.13  E-value=0.005  Score=68.83  Aligned_cols=114  Identities=19%  Similarity=0.299  Sum_probs=82.8

Q ss_pred             eEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeC-CC
Q 002446          413 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RG  491 (921)
Q Consensus       413 IsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~-Dg  491 (921)
                      +-+..|+|+|++|++++-.-..|.+|++..+.-          .....+.++.|.-   -.-|+|+|++++.-+.+. ++
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L----------~~~~~~~v~~G~G---PRHi~FHpn~k~aY~v~EL~s  213 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKL----------TPADPAEVKPGAG---PRHIVFHPNGKYAYLVNELNS  213 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCcc----------ccccccccCCCCC---cceEEEcCCCcEEEEEeccCC
Confidence            778899999999999986544699999997611          0111233344432   467999999999877664 99


Q ss_pred             cEEEEecCCC-CCceeecCCCCCcccccCCcCCccccCCCCCCCCCCCCcccccCC
Q 002446          492 TSHLFAINPL-GGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASG  546 (921)
Q Consensus       492 TVhVWdi~~~-g~~~~l~~H~~~~~~~~~~~~~~~~r~~~~s~l~~~~~~~l~~~~  546 (921)
                      ||-+|.+++. +....++.|...+.+|.|..+...++.+       +|+.-|+++|
T Consensus       214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis-------~dGrFLYasN  262 (346)
T COG2706         214 TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS-------PDGRFLYASN  262 (346)
T ss_pred             EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC-------CCCCEEEEec
Confidence            9999999996 4556889998888888777666655555       4566666655

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.12  E-value=0.0044  Score=74.47  Aligned_cols=102  Identities=23%  Similarity=0.342  Sum_probs=77.3

Q ss_pred             cccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecC------C---CEEEEEeCCCCCCCCCCccCCC
Q 002446          384 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ------G---HNINIFKIIPGILGTSSACDAG  454 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~D------G---t~IrIWdi~~g~~~~~s~~~~~  454 (921)
                      +-+.+.|+|.|+|+.++.+-+.|..|++.|.+|.|--... |++.+..      |   +.+.|-|+.+|.          
T Consensus       441 AvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGl----------  509 (1062)
T KOG1912|consen  441 AVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGL----------  509 (1062)
T ss_pred             EeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEccccc----------
Confidence            3456789999999999999999999999999999976655 4444332      1   124566777761          


Q ss_pred             CceeEEEEEe--cccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          455 TSYVHLYRLQ--RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       455 ~~~~~l~~l~--RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                         .  ..+|  ++...+.|..|--|.-++|||+.=.|.-+-|||+.+.
T Consensus       510 ---s--k~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  510 ---S--KRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             ---c--cccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence               1  1232  4555567999999999999999999999999999654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=97.10  E-value=0.0067  Score=66.95  Aligned_cols=97  Identities=10%  Similarity=0.056  Sum_probs=68.9

Q ss_pred             CCEEEEEECCC-C--ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 002446          389 VGMVIVRDIVS-K--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR  465 (921)
Q Consensus       389 ~G~V~IwDl~s-~--~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~R  465 (921)
                      |..-+||.... +  ++.-.|..|....+++.++|.+..+|++|.- +.|-||-.+....+=-        .+|+.+-.|
T Consensus        76 drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga-r~isVcy~E~ENdWWV--------sKhikkPir  146 (361)
T KOG1523|consen   76 DRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGA-RLISVCYYEQENDWWV--------SKHIKKPIR  146 (361)
T ss_pred             CCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCc-cEEEEEEEecccceeh--------hhhhCCccc
Confidence            33445555522 2  3455667889999999999999999999986 5689987765411100        022222212


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 002446          466 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       466 G~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi  498 (921)
                          ..|.+++|.|++-.||+||.|+.++||..
T Consensus       147 ----Stv~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  147 ----STVTSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             ----cceeeeeccCCcceecccccCcceeEEEE
Confidence                34999999999999999999999999974

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.08  E-value=0.012  Score=65.44  Aligned_cols=99  Identities=20%  Similarity=0.364  Sum_probs=77.1

Q ss_pred             CCCCEEEEE--ECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 002446          387 DNVGMVIVR--DIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ  464 (921)
Q Consensus       387 ~~~G~V~Iw--Dl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~  464 (921)
                      ...|.|.+-  +...-.++.++++|..+|.+++++|...+|.+++.|- .+.+||+.-. .            ...+++.
T Consensus       172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~-~vi~wdigg~-~------------g~~~el~  237 (404)
T KOG1409|consen  172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDH-SVIMWDIGGR-K------------GTAYELQ  237 (404)
T ss_pred             ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccC-ceEEEeccCC-c------------ceeeeec
Confidence            444555553  3445678899999999999999999999999999995 5899999754 1            1235554


Q ss_pred             cccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          465 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       465 RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                       |+ ..+|+.++.-+--+.+.+.+.||.|-+|+++-.
T Consensus       238 -gh-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  238 -GH-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             -cc-hhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence             33 345888888888899999999999999999753

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.07  E-value=0.0029  Score=69.87  Aligned_cols=86  Identities=17%  Similarity=0.279  Sum_probs=66.8

Q ss_pred             CCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc
Q 002446          388 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG  466 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGt-lLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG  466 (921)
                      .+++|.+|++....--..+..-..+++++++||||+ +|.|..-|-+ |.||.+.+.            ++.+   +.  
T Consensus        69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lr-iTVWSL~t~------------~~~~---~~--  130 (447)
T KOG4497|consen   69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLR-ITVWSLNTQ------------KGYL---LP--  130 (447)
T ss_pred             ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeE-EEEEEeccc------------eeEE---ec--
Confidence            367999999998887788888889999999999996 4555556654 999999875            2222   22  


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCC
Q 002446          467 LTNAVIQDISFSDDSNWIMISSSRG  491 (921)
Q Consensus       467 ~t~a~I~sIaFSPDg~~LAsgS~Dg  491 (921)
                      +..+.+..++|.|||++.|..+.+.
T Consensus       131 ~pK~~~kg~~f~~dg~f~ai~sRrD  155 (447)
T KOG4497|consen  131 HPKTNVKGYAFHPDGQFCAILSRRD  155 (447)
T ss_pred             ccccCceeEEECCCCceeeeeeccc
Confidence            2223478999999999999998763

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.03  E-value=0.0077  Score=68.61  Aligned_cols=102  Identities=10%  Similarity=0.036  Sum_probs=76.0

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEec---------CCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHL  460 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~---------DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l  460 (921)
                      |.|.|.|..+++.+.++..-..|-. + +||||+.|..|..         +...|.|||+.+.              ..+
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--------------~~~   90 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--------------LPI   90 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--------------cEE
Confidence            7899999999999999985444443 4 9999999999887         5557999999986              334


Q ss_pred             EEEecccc-----cccEEEEEEccCCCEEEEEe-C-CCcEEEEecCCCCCceee
Q 002446          461 YRLQRGLT-----NAVIQDISFSDDSNWIMISS-S-RGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       461 ~~l~RG~t-----~a~I~sIaFSPDg~~LAsgS-~-DgTVhVWdi~~~g~~~~l  507 (921)
                      .++.-+..     ...-..+++||||++|.+.. . +..|-|.|+....-...+
T Consensus        91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei  144 (352)
T TIGR02658        91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM  144 (352)
T ss_pred             eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence            44432211     12245799999999999877 3 789999999886444434

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.97  E-value=0.71  Score=59.25  Aligned_cols=98  Identities=14%  Similarity=0.192  Sum_probs=66.1

Q ss_pred             CCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecC--CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc
Q 002446          389 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ--GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG  466 (921)
Q Consensus       389 ~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~D--Gt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG  466 (921)
                      .-.++||+-+ |.+..+-+.-.+--.+|+|-|+|.++|++-..  ...|..|.=. |            ..+--+.++..
T Consensus       236 ~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-G------------LrhgeF~l~~~  301 (928)
T PF04762_consen  236 RRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-G------------LRHGEFTLRFD  301 (928)
T ss_pred             eeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-C------------cEeeeEecCCC
Confidence            3689999976 55444444333334568999999999998762  2345555422 1            11223555433


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          467 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       467 ~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      .....|..|+|++||..||+.-.|. |.+|-...|
T Consensus       302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence            3345699999999999999988665 999998776

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.92  E-value=0.48  Score=49.49  Aligned_cols=57  Identities=12%  Similarity=0.063  Sum_probs=42.5

Q ss_pred             cEEEEEECCCCcEEEEEeCC---CCEE--EEEEcCCEEEEEeCCEEEEEECCCCcEEEEEec
Q 002446          206 TVVHFYSLRSQSYVHMLKFR---SPIY--SVRCSSRVVAICQAAQVHCFDAATLEIEYAILT  262 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~---s~V~--sV~~S~riLAVa~d~~I~IwDl~T~~~l~tL~t  262 (921)
                      ++|..||+++|+.+....+.   ....  .+.-.+++++...++.|++||+.|++.+++...
T Consensus         3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~   64 (238)
T PF13360_consen    3 GTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL   64 (238)
T ss_dssp             SEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec
Confidence            67999999999999999872   2333  222234444446889999999999998888764

...

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=96.88  E-value=0.012  Score=71.93  Aligned_cols=182  Identities=14%  Similarity=0.128  Sum_probs=124.6

Q ss_pred             cEEEEEECCCCcEEEEEeCCC-CEEEEEEcCCEEEE-EeCCEEEEEECCCCcEEEEEecCCCccCCCCCCCCCcccccee
Q 002446          206 TVVHFYSLRSQSYVHMLKFRS-PIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA  283 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s-~V~sV~~S~riLAV-a~d~~I~IwDl~T~~~l~tL~t~p~~~g~p~~~g~~i~~~piA  283 (921)
                      ..+-.+|+++.+..+.....+ .|.=++-|.|++.. ...++|.+-|..+.+.++++.+|..            ....|.
T Consensus       157 ~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~------------siSDfD  224 (1118)
T KOG1275|consen  157 EKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG------------SISDFD  224 (1118)
T ss_pred             hheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeecccc------------ceeeee
Confidence            456788999999988888854 68888888887776 5668999999999999999998843            122233


Q ss_pred             ecCceEEecCCCceecCCCccCCcccccccccccccCCCcceeehhhhcchhhcceeEecCCccccccccccccccCCCc
Q 002446          284 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ  363 (921)
Q Consensus       284 lgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~LasGl~~lGd~g~k~ls~y~~~~~p~~~  363 (921)
                      +....|+..                                                   |-..+    .|         
T Consensus       225 v~GNlLitC---------------------------------------------------G~S~R----~~---------  240 (1118)
T KOG1275|consen  225 VQGNLLITC---------------------------------------------------GYSMR----RY---------  240 (1118)
T ss_pred             ccCCeEEEe---------------------------------------------------ecccc----cc---------
Confidence            322222221                                                   10000    00         


Q ss_pred             CCcccccCCCCCCCcccCcccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCC
Q 002446          364 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIP  442 (921)
Q Consensus       364 ~si~sa~~~~k~~g~v~g~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~  442 (921)
                                           .-.-|--|+|||+...+.+.-+.-|.+| .-+.|.|. -+.||.+|.-|. +.+-|..+
T Consensus       241 ---------------------~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~  297 (1118)
T KOG1275|consen  241 ---------------------NLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTAT  297 (1118)
T ss_pred             ---------------------cccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeeccccc
Confidence                                 0012446899999999888888877777 67899997 567888888887 77777443


Q ss_pred             CCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 002446          443 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       443 g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi  498 (921)
                      -       +.+.....++...     ..-|..+++|+.++.+|.|-.+|.||+|.=
T Consensus       298 l-------sNP~~~~~~v~p~-----~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  298 L-------SNPPAGVKMVNPN-----GSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             c-------CCCccceeEEccC-----CCcceeEEecCCCceEEEecccCcEeeecC
Confidence            2       0011111222111     122889999999999999999999999983

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=96.87  E-value=0.021  Score=66.93  Aligned_cols=51  Identities=25%  Similarity=0.488  Sum_probs=41.5

Q ss_pred             CCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCC-----CEEEEEeCC
Q 002446          389 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-----HNINIFKII  441 (921)
Q Consensus       389 ~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DG-----t~IrIWdi~  441 (921)
                      .|.|-|||+.+.+++..+++-..  +-..|+|||.+++||..-=     ..|+||+..
T Consensus       335 ~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  335 PGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            58899999999999999987654  4478999999999997531     238999875

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.79  E-value=0.69  Score=51.88  Aligned_cols=96  Identities=21%  Similarity=0.276  Sum_probs=63.5

Q ss_pred             EEEEEECCCCceEEE--e--ccCCCCeEEEEECCCCCEEEEEecCCC------EEEEEeCCCCCCCCCCccCCCCceeEE
Q 002446          391 MVIVRDIVSKNVIAQ--F--RAHKSPISALCFDPSGILLVTASVQGH------NINIFKIIPGILGTSSACDAGTSYVHL  460 (921)
Q Consensus       391 ~V~IwDl~s~~~l~~--~--~aH~~pIsaLaFSPdGtlLATaS~DGt------~IrIWdi~~g~~~~~s~~~~~~~~~~l  460 (921)
                      .+.+-|..+++++.+  +  .-|.-+|..|+++++|+.+.-.-.+|-      .+-+++-...              ..+
T Consensus       139 sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--------------~~~  204 (305)
T PF07433_consen  139 SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--------------LRL  204 (305)
T ss_pred             ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--------------cee
Confidence            355678888988877  5  238889999999999998887766653      1111111110              000


Q ss_pred             EEE----ecccccccEEEEEEccCCCEEEEEeCCC-cEEEEecCCC
Q 002446          461 YRL----QRGLTNAVIQDISFSDDSNWIMISSSRG-TSHLFAINPL  501 (921)
Q Consensus       461 ~~l----~RG~t~a~I~sIaFSPDg~~LAsgS~Dg-TVhVWdi~~~  501 (921)
                      ...    .+.+... |-+|+|++|+.++|++|-+| .+.+||..+.
T Consensus       205 ~~~p~~~~~~l~~Y-~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg  249 (305)
T PF07433_consen  205 LPAPEEQWRRLNGY-IGSIAADRDGRLIAVTSPRGGRVAVWDAATG  249 (305)
T ss_pred             ccCChHHHHhhCCc-eEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence            111    1122222 88999999999998888765 7899998875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.56  E-value=0.29  Score=57.22  Aligned_cols=81  Identities=23%  Similarity=0.187  Sum_probs=49.0

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecC-CC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~D-Gt-~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      ..|.++|+.+++. ..+..+........|+|||+.|+-.+.. |. .|.+.|+..+            ..+.+ .. .|.
T Consensus       257 ~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g------------~~~rl-t~-~g~  321 (419)
T PRK04043        257 PDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG------------SVEQV-VF-HGK  321 (419)
T ss_pred             cEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC------------CeEeC-cc-CCC
Confidence            4688888877763 3444443333446899999988777654 33 3455555543            12221 11 122


Q ss_pred             ccccEEEEEEccCCCEEEEEeCC
Q 002446          468 TNAVIQDISFSDDSNWIMISSSR  490 (921)
Q Consensus       468 t~a~I~sIaFSPDg~~LAsgS~D  490 (921)
                           ...+|||||++||..+..
T Consensus       322 -----~~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        322 -----NNSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             -----cCceECCCCCEEEEEEcC
Confidence                 124899999999988765

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=96.54  E-value=0.012  Score=64.46  Aligned_cols=102  Identities=13%  Similarity=0.138  Sum_probs=73.0

Q ss_pred             CCCEEEEEECCCCce--EEEeccCCCCeEEEEECCC-CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe
Q 002446          388 NVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ  464 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~--l~~~~aH~~pIsaLaFSPd-GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~  464 (921)
                      ..|.+.+-+.....+  ++.+++|.-++...+|+.. -.++.||++||. +.-||+.-.             ...++.-.
T Consensus       141 s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p-------------~~~i~~n~  206 (339)
T KOG0280|consen  141 SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP-------------KTFIWHNS  206 (339)
T ss_pred             CCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC-------------cceeeecc
Confidence            345555444444433  3488999999999999874 568999999996 899999832             12334322


Q ss_pred             cccccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCCCc
Q 002446          465 RGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGS  504 (921)
Q Consensus       465 RG~t~a~I~sIaFSP-Dg~~LAsgS~DgTVhVWdi~~~g~~  504 (921)
                      +-|+.. |.+|.=|| +..+||+|+-|-+|++||...-+++
T Consensus       207 kvH~~G-V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP  246 (339)
T KOG0280|consen  207 KVHTSG-VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP  246 (339)
T ss_pred             eeeecc-eEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence            333333 78887775 7999999999999999999865443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=96.33  E-value=0.041  Score=67.65  Aligned_cols=100  Identities=14%  Similarity=0.216  Sum_probs=69.4

Q ss_pred             eEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccc
Q 002446          108 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA  187 (921)
Q Consensus       108 ~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLLAvv~~g~~~g~~~~~Dg~~~~  187 (921)
                      .++..|..+.+-.+|+.... ...+..-..+.|..++.-                 .-+.+|++.               
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~-e~r~~~v~a~~v~imR~N-----------------nr~lf~G~t---------------  195 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEK-ETRTTNVSASGVTIMRYN-----------------NRNLFCGDT---------------  195 (1118)
T ss_pred             ceeecchhhheeeeecccce-eeeeeeccCCceEEEEec-----------------CcEEEeecc---------------
Confidence            55555667788899998732 222333334457766642                 123445542               


Q ss_pred             cCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeC-CCCEEEEEEcCCEEEEE----------eCCEEEEEECCCCcE
Q 002446          188 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAIC----------QAAQVHCFDAATLEI  256 (921)
Q Consensus       188 ~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f-~s~V~sV~~S~riLAVa----------~d~~I~IwDl~T~~~  256 (921)
                                       .++|.+=|+++.+.+|++.. ...|.++...+++|+.|          .|.-|.+||+++++.
T Consensus       196 -----------------~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra  258 (1118)
T KOG1275|consen  196 -----------------RGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA  258 (1118)
T ss_pred             -----------------cceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence                             17899999999999999985 67899999998888775          245688999998875


Q ss_pred             E
Q 002446          257 E  257 (921)
Q Consensus       257 l  257 (921)
                      +
T Consensus       259 l  259 (1118)
T KOG1275|consen  259 L  259 (1118)
T ss_pred             c
Confidence            4

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.18  E-value=1.9  Score=45.95  Aligned_cols=99  Identities=17%  Similarity=0.134  Sum_probs=62.5

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccccc
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN  469 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~  469 (921)
                      |.|..++.. ++....+ ..-..-..|+|+|||+.|..+......|..|++... ...      ....+.+..+..+.  
T Consensus       115 g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~-~~~------~~~~~~~~~~~~~~--  183 (246)
T PF08450_consen  115 GSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD-GGE------LSNRRVFIDFPGGP--  183 (246)
T ss_dssp             EEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT-TCC------EEEEEEEEE-SSSS--
T ss_pred             cceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEecccc-ccc------eeeeeeEEEcCCCC--
Confidence            677778877 4433332 233456789999999988766666555778877643 000      00112233333221  


Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 002446          470 AVIQDISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       470 a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                      ...-.+++..+|+..++.-..+.|.+|+-.
T Consensus       184 g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  184 GYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             CEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             cCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            236789999999998888888899998865

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.013  Score=66.37  Aligned_cols=96  Identities=20%  Similarity=0.184  Sum_probs=75.5

Q ss_pred             EEEEECCCCceEEEeccCCCCeEEEEECCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccc
Q 002446          392 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA  470 (921)
Q Consensus       392 V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGt-lLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a  470 (921)
                      |++.+-.+.+.+..+..|...|..|+|||... +|..+|.+. .|+|+|+.+.            .+...|..+     +
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~n-kiki~dlet~------------~~vssy~a~-----~  236 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGN-KIKIMDLETS------------CVVSSYIAY-----N  236 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCc-eEEEEecccc------------eeeeheecc-----C
Confidence            78888777777778889999999999999988 788888875 4999999985            233344443     3


Q ss_pred             cEEEEEEccCCC-EEEEEeCCCcEEEEecCCCCCce
Q 002446          471 VIQDISFSDDSN-WIMISSSRGTSHLFAINPLGGSV  505 (921)
Q Consensus       471 ~I~sIaFSPDg~-~LAsgS~DgTVhVWdi~~~g~~~  505 (921)
                      .|++++|.-|.. +|..|-.+|.|.|||+....+..
T Consensus       237 ~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~  272 (463)
T KOG1645|consen  237 QIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL  272 (463)
T ss_pred             CceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence            499999987665 56677889999999998765543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.06  E-value=0.76  Score=50.60  Aligned_cols=99  Identities=18%  Similarity=0.243  Sum_probs=60.8

Q ss_pred             CCCCeEEEEECCCCCEEEEEecCCC----------EEEEEeCCCCCCC----CCCccCC-----CCceeEEEE----Eec
Q 002446          409 HKSPISALCFDPSGILLVTASVQGH----------NINIFKIIPGILG----TSSACDA-----GTSYVHLYR----LQR  465 (921)
Q Consensus       409 H~~pIsaLaFSPdGtlLATaS~DGt----------~IrIWdi~~g~~~----~~s~~~~-----~~~~~~l~~----l~R  465 (921)
                      +...|+++.|+|.-++|..|+..-.          -+.-|.+..+.+-    .....+.     ......+..    .+.
T Consensus       146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~  225 (282)
T PF15492_consen  146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ  225 (282)
T ss_pred             CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence            4679999999999898887753211          1567777655220    0000000     001111111    112


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          466 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       466 G~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                      +.....|..|+.||||+.||+...+|.+-||++..-.....+
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            323344999999999999999999999999999665444333

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=95.97  E-value=0.79  Score=53.83  Aligned_cols=123  Identities=14%  Similarity=0.121  Sum_probs=78.6

Q ss_pred             CCCcEEEEEEecccCCCCCCCeEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccccCCCEE
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLL  166 (921)
Q Consensus        87 ~kd~V~w~~Fd~~~~d~~~~~~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~~~rPLL  166 (921)
                      ....+..++|..   -|    ..|......|+++|+-+..+   .++.-+..-|+.+.+.|+              +.+|
T Consensus        31 ~~~p~~~~~~SP---~G----~~l~~~~~~~V~~~~g~~~~---~l~~~~~~~V~~~~fSP~--------------~kYL   86 (561)
T COG5354          31 ENWPVAYVSESP---LG----TYLFSEHAAGVECWGGPSKA---KLVRFRHPDVKYLDFSPN--------------EKYL   86 (561)
T ss_pred             cCcchhheeecC---cc----hheehhhccceEEccccchh---heeeeecCCceecccCcc--------------ccee
Confidence            445677777766   33    78888889999999988743   344455667888888774              3455


Q ss_pred             EEEeCCCCcCCccccCCcccccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCCC-C-----EEEEEEcCCEEEE
Q 002446          167 VFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS-P-----IYSVRCSSRVVAI  240 (921)
Q Consensus       167 Avv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~s-~-----V~sV~~S~riLAV  240 (921)
                      ..-.....      .+.           .| .+.+....+.+.+||..+|..+..+.... +     +..-.++.+++|=
T Consensus        87 ~tw~~~pi------~~p-----------e~-e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR  148 (561)
T COG5354          87 VTWSREPI------IEP-----------EI-EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVAR  148 (561)
T ss_pred             eeeccCCc------cCh-----------hh-ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhh
Confidence            43333211      010           00 01122233579999999999999887632 2     4444445666665


Q ss_pred             EeCCEEEEEEC
Q 002446          241 CQAAQVHCFDA  251 (921)
Q Consensus       241 a~d~~I~IwDl  251 (921)
                      .....++|+++
T Consensus       149 vv~~sl~i~e~  159 (561)
T COG5354         149 VVGSSLYIHEI  159 (561)
T ss_pred             hccCeEEEEec
Confidence            56778999997

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=95.87  E-value=0.62  Score=50.98  Aligned_cols=61  Identities=13%  Similarity=0.136  Sum_probs=42.8

Q ss_pred             cccccCCCCEEEEEECCCCceEEE-----eccCCCCeEEEEECCCCC--EEEEEecCCCEEEEEeCCCC
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQ-----FRAHKSPISALCFDPSGI--LLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~-----~~aH~~pIsaLaFSPdGt--lLATaS~DGt~IrIWdi~~g  443 (921)
                      .|+.+..+|++.|||+........     -..|.++|..+.|+|-|-  +|.-.-.-+ -++|-|+.++
T Consensus       217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs-~~hv~D~R~~  284 (344)
T KOG4532|consen  217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFS-RVHVVDTRNY  284 (344)
T ss_pred             eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcc-eEEEEEcccC
Confidence            456677899999999987543222     236889999999999765  343333333 4788888875

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=95.57  E-value=0.052  Score=63.70  Aligned_cols=93  Identities=17%  Similarity=0.246  Sum_probs=63.2

Q ss_pred             EEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEec----------CCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 002446          391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSYVHL  460 (921)
Q Consensus       391 ~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~----------DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l  460 (921)
                      -|.+|--.+-..++.| .|. .|..+.|||.-+||+|=|.          +|+.+.|||+.+|              ...
T Consensus       232 GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG--------------~lk  295 (698)
T KOG2314|consen  232 GIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG--------------LLK  295 (698)
T ss_pred             ceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc--------------chh
Confidence            3778865554444444 343 5889999999999999763          5677999999997              111


Q ss_pred             EEEe--cccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          461 YRLQ--RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       461 ~~l~--RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      ..+.  ++. ...-.=.-||.|++|+|.-.. .+|+||+....
T Consensus       296 rsF~~~~~~-~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf  336 (698)
T KOG2314|consen  296 RSFPVIKSP-YLKWPIFRWSHDDKYFARMTG-NSISIYETPSF  336 (698)
T ss_pred             cceeccCCC-ccccceEEeccCCceeEEecc-ceEEEEecCce
Confidence            1111  111 112334679999999998877 57999987664

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.52  E-value=1.4  Score=49.75  Aligned_cols=100  Identities=18%  Similarity=0.235  Sum_probs=58.9

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccccc
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN  469 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~  469 (921)
                      |.|+.+|. .+..+..+..|-.--+.|+|||||+.|..+......|.-|++... .+..  ++  ...........|.  
T Consensus       143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~-~g~~--~~--~~~~~~~~~~~G~--  214 (307)
T COG3386         143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA-TGPI--GG--RRGFVDFDEEPGL--  214 (307)
T ss_pred             ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc-cCcc--CC--cceEEEccCCCCC--
Confidence            55666665 466666666665555679999999999999888666777776631 1110  00  0001111112232  


Q ss_pred             ccEEEEEEccCCCEEEEEeCCC-cEEEEecC
Q 002446          470 AVIQDISFSDDSNWIMISSSRG-TSHLFAIN  499 (921)
Q Consensus       470 a~I~sIaFSPDg~~LAsgS~Dg-TVhVWdi~  499 (921)
                        .-.++...||.+-+++-.+| .|++|+..
T Consensus       215 --PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         215 --PDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             --CCceEEeCCCCEEEecccCCceEEEECCC
Confidence              34567777787775444443 78888765

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=95.34  E-value=0.8  Score=48.82  Aligned_cols=95  Identities=23%  Similarity=0.292  Sum_probs=59.1

Q ss_pred             CCEEEEEECCCCceEEEeccCCCCeEEEEEC-CCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          389 VGMVIVRDIVSKNVIAQFRAHKSPISALCFD-PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       389 ~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFS-PdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      .+.|..||..+++... +....  ...++|. ++|+++++. .++  +.++|..++            ....+.....+.
T Consensus        21 ~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~-~~~--~~~~d~~~g------------~~~~~~~~~~~~   82 (246)
T PF08450_consen   21 GGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVAD-SGG--IAVVDPDTG------------KVTVLADLPDGG   82 (246)
T ss_dssp             TTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEE-TTC--EEEEETTTT------------EEEEEEEEETTC
T ss_pred             CCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEE-cCc--eEEEecCCC------------cEEEEeeccCCC
Confidence            4788999998876532 33222  5566777 787776664 443  577788775            344455553232


Q ss_pred             -ccccEEEEEEccCCCEEEEEeCCCc------EEEEecCCC
Q 002446          468 -TNAVIQDISFSDDSNWIMISSSRGT------SHLFAINPL  501 (921)
Q Consensus       468 -t~a~I~sIaFSPDg~~LAsgS~DgT------VhVWdi~~~  501 (921)
                       .....+++++.|||++.++.+....      =.||.+.+.
T Consensus        83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~  123 (246)
T PF08450_consen   83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD  123 (246)
T ss_dssp             SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred             cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence             3455999999999998887765533      345666555

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=95.33  E-value=8  Score=49.95  Aligned_cols=75  Identities=7%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE-EEecccccccEEEEEEcc-CCCEEE
Q 002446          408 AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY-RLQRGLTNAVIQDISFSD-DSNWIM  485 (921)
Q Consensus       408 aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~-~l~RG~t~a~I~sIaFSP-Dg~~LA  485 (921)
                      .....|..|+||+|++.||..-.|.  |.+|-....             .+.++ +++-. ....+..+.|+| +...|.
T Consensus       302 ~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NY-------------HWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~  365 (928)
T PF04762_consen  302 PEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNY-------------HWYLKQEIRFS-SSESVNFVKWDPEKPLRLH  365 (928)
T ss_pred             CCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCC-------------EEEEEEEEEcc-CCCCCCceEECCCCCCEEE
Confidence            3455789999999999999987663  899987764             22222 23211 122255599999 556688


Q ss_pred             EEeCCCcEEEEec
Q 002446          486 ISSSRGTSHLFAI  498 (921)
Q Consensus       486 sgS~DgTVhVWdi  498 (921)
                      +.+..|.+..++.
T Consensus       366 v~t~~g~~~~~~~  378 (928)
T PF04762_consen  366 VLTSNGQYEIYDF  378 (928)
T ss_pred             EEecCCcEEEEEE
Confidence            8888788766655

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=95.29  E-value=0.091  Score=68.68  Aligned_cols=121  Identities=16%  Similarity=0.196  Sum_probs=88.5

Q ss_pred             ccccCCCCEEEEEECCCCceEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCC-----C----------
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-----G----------  446 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~-aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~-----~----------  446 (921)
                      ++++..+|.|++|.-..++.+..++ +-.+.|+.+.|+.+|.....+..||. +-+|.+.+-..     +          
T Consensus      2223 Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred             EEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccCCcceeccccCCccccceeee
Confidence            4577889999999999999888888 33488999999999999999999997 89999876311     0          


Q ss_pred             --------CCCc----cCC----CCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 002446          447 --------TSSA----CDA----GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ  508 (921)
Q Consensus       447 --------~~s~----~~~----~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~  508 (921)
                              .++-    +.|    ......+.+.+-    .-++++++-|.-+.|.+|+.+|.|.|||+........++
T Consensus      2302 ~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~----~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2302 GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD----GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             ehhhhccccCCCCCcccchhcccCcccceeeeecC----CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence                    0000    000    011122222221    227899999999999999999999999998765554443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.22  E-value=0.97  Score=50.45  Aligned_cols=94  Identities=13%  Similarity=0.211  Sum_probs=59.4

Q ss_pred             CEEEEEECCCCc-eEE--EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc
Q 002446          390 GMVIVRDIVSKN-VIA--QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG  466 (921)
Q Consensus       390 G~V~IwDl~s~~-~l~--~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG  466 (921)
                      ..|.+|++...+ .+.  .+..+ ..|++|..  -+.+++.++.... +.++.....             ...+..+.|-
T Consensus       107 ~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~--~~~~I~vgD~~~s-v~~~~~~~~-------------~~~l~~va~d  169 (321)
T PF03178_consen  107 NKLYVYDLDNSKTLLKKAFYDSP-FYITSLSV--FKNYILVGDAMKS-VSLLRYDEE-------------NNKLILVARD  169 (321)
T ss_dssp             TEEEEEEEETTSSEEEEEEE-BS-SSEEEEEE--ETTEEEEEESSSS-EEEEEEETT-------------TE-EEEEEEE
T ss_pred             CEEEEEEccCcccchhhheecce-EEEEEEec--cccEEEEEEcccC-EEEEEEEcc-------------CCEEEEEEec
Confidence            578888887776 322  22222 24444443  4668888887654 677754432             1234445554


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          467 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       467 ~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                      .....+.+++|-+|++.++++..+|.+++|...+
T Consensus       170 ~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  170 YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            4444589999987778999999999999999865

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.20  E-value=0.053  Score=63.28  Aligned_cols=124  Identities=21%  Similarity=0.262  Sum_probs=82.6

Q ss_pred             cccccCCCCEEEEEECCC-------CceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCC---------
Q 002446          382 HFPDADNVGMVIVRDIVS-------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL---------  445 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s-------~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~---------  445 (921)
                      .|+++..|.+|++|.+..       ..+..+..+|+.+|..+.|=.|-+++|++  ||. |++||-.-+..         
T Consensus       749 SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g-iHlWDPFigr~Laq~~dapk  825 (1034)
T KOG4190|consen  749 SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG-IHLWDPFIGRLLAQMEDAPK  825 (1034)
T ss_pred             ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc-ceeecccccchhHhhhcCcc
Confidence            456778899999999864       34667788999999999999999999876  454 89999654311         


Q ss_pred             -CCC--------------Cc-cCCCCce--------eEEEEEec---ccccccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 002446          446 -GTS--------------SA-CDAGTSY--------VHLYRLQR---GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       446 -~~~--------------s~-~~~~~~~--------~~l~~l~R---G~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi  498 (921)
                       +..              .+ +...+.+        .-..+++-   -..++.+.+|+..|.|+|+|.+-+.|+|-+.|.
T Consensus       826 ~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDa  905 (1034)
T KOG4190|consen  826 EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDA  905 (1034)
T ss_pred             cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEec
Confidence             000              00 0000000        00111110   112345889999999999999999999999998


Q ss_pred             CCCCCceeec
Q 002446          499 NPLGGSVNFQ  508 (921)
Q Consensus       499 ~~~g~~~~l~  508 (921)
                      .++.-...++
T Consensus       906 R~G~vINswr  915 (1034)
T KOG4190|consen  906 RNGKVINSWR  915 (1034)
T ss_pred             CCCceeccCC
Confidence            7764444443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=95.15  E-value=0.23  Score=54.16  Aligned_cols=99  Identities=12%  Similarity=0.052  Sum_probs=65.0

Q ss_pred             CCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          388 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      ..+++.+-+....+...++..  -.+.++++|||++++++.++-.. |-.|.+...            ...++. .+...
T Consensus       138 ht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgds~~-Vf~y~id~~------------sey~~~-~~~a~  201 (344)
T KOG4532|consen  138 HTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGDSRR-VFRYAIDDE------------SEYIEN-IYEAP  201 (344)
T ss_pred             cceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecCCCc-ceEEEeCCc------------cceeee-eEecc
Confidence            334444444444443333332  12788999999999999887654 677777754            112222 11122


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 002446          468 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG  502 (921)
Q Consensus       468 t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g  502 (921)
                      +.-.=.+.+||.....+|+++.||++-|||+..-+
T Consensus       202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             cCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence            22224688999999999999999999999997653

>smart00320 WD40 WD40 repeats

Probab=95.10  E-value=0.037  Score=38.49  Aligned_cols=28  Identities=25%  Similarity=0.525  Sum_probs=26.0

Q ss_pred             ccEEEEEEccCCCEEEEEeCCCcEEEEe
Q 002446          470 AVIQDISFSDDSNWIMISSSRGTSHLFA  497 (921)
Q Consensus       470 a~I~sIaFSPDg~~LAsgS~DgTVhVWd  497 (921)
                      ..|.+++|+++++++++++.|+++++|+
T Consensus        13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       13 GPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3599999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.04  E-value=0.02  Score=66.64  Aligned_cols=85  Identities=21%  Similarity=0.256  Sum_probs=61.9

Q ss_pred             eEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCC
Q 002446          402 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS  481 (921)
Q Consensus       402 ~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg  481 (921)
                      .+..|.+|+..|.+++-=.+..-+++||.|.| +++|.+.+...+       .+...+.++.. . +...|.+|-|-.|-
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKT-VKLWSik~EgD~-------~~tsaCQfTY~-a-Hkk~i~~igfL~~l  796 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKT-VKLWSIKPEGDE-------IGTSACQFTYQ-A-HKKPIHDIGFLADL  796 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCce-EEEEEeccccCc-------cccceeeeEhh-h-ccCcccceeeeecc
Confidence            35677899999999876667777999999987 899999975211       11112333432 1 23359999999999


Q ss_pred             CEEEEEeCCCcEEEEec
Q 002446          482 NWIMISSSRGTSHLFAI  498 (921)
Q Consensus       482 ~~LAsgS~DgTVhVWdi  498 (921)
                      +++|++  ||-||+||-
T Consensus       797 r~i~Sc--D~giHlWDP  811 (1034)
T KOG4190|consen  797 RSIASC--DGGIHLWDP  811 (1034)
T ss_pred             ceeeec--cCcceeecc
Confidence            998876  899999984

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.95  E-value=7.9  Score=43.22  Aligned_cols=50  Identities=6%  Similarity=0.246  Sum_probs=41.1

Q ss_pred             cEEEEEECCCC-------cEEEEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECCCCc
Q 002446          206 TVVHFYSLRSQ-------SYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLE  255 (921)
Q Consensus       206 ~tVrIWDL~Tg-------~~V~tL~f~s~V~sV~~S~riLAVa~d~~I~IwDl~T~~  255 (921)
                      +.|.++++...       +.++..+++++|++|..-...|+++..++|++|++...+
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~  118 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK  118 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence            88999999985       455666789999999986666888889999999998777

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=94.92  E-value=1.5  Score=53.89  Aligned_cols=117  Identities=13%  Similarity=0.112  Sum_probs=85.8

Q ss_pred             eEEEEEccCcEEEEEccCCCCeEEeeeeecCCEEEEEEecCCCCCccccCccc--cCCCEEEEEeCCCCcCCccccCCcc
Q 002446          108 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFA--EVRPLLVFCADGSRSCGTKVQDGLA  185 (921)
Q Consensus       108 ~vLllG~~~GfqVWDv~~~~~~~elvS~~dG~Vr~v~~lP~P~~~~~~~d~F~--~~rPLLAvv~~g~~~g~~~~~Dg~~  185 (921)
                      -+++-|..+-+-|-|.-.. .....+..|...|..+++.|.|...    |.|.  ...++||+...              
T Consensus        27 GLiAygshslV~VVDs~s~-q~iqsie~h~s~V~~VrWap~~~p~----~llS~~~~~lliAsaD~--------------   87 (1062)
T KOG1912|consen   27 GLIAYGSHSLVSVVDSRSL-QLIQSIELHQSAVTSVRWAPAPSPR----DLLSPSSSQLLIASADI--------------   87 (1062)
T ss_pred             ceEEEecCceEEEEehhhh-hhhhccccCccceeEEEeccCCCch----hccCccccceeEEeccc--------------
Confidence            4788888888888888774 2334567788999999999887532    3343  23455654432              


Q ss_pred             cccCCCCCCcCCCCCCCCCCcEEEEEECCCCcEEEEEeCC-CCEEEEEE------cCCEEEE-EeCCEEEEEECCCCcEE
Q 002446          186 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFR-SPIYSVRC------SSRVVAI-CQAAQVHCFDAATLEIE  257 (921)
Q Consensus       186 ~~~~g~~~~~h~~g~~~~~~~tVrIWDL~Tg~~V~tL~f~-s~V~sV~~------S~riLAV-a~d~~I~IwDl~T~~~l  257 (921)
                                         .+.|-+||...+..+..|+.+ .+|.++.+      |+.+|++ .....|.+|+..||++.
T Consensus        88 -------------------~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~  148 (1062)
T KOG1912|consen   88 -------------------SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF  148 (1062)
T ss_pred             -------------------cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee
Confidence                               156899999999998888874 58888888      3455554 67789999999999988


Q ss_pred             EEEec
Q 002446          258 YAILT  262 (921)
Q Consensus       258 ~tL~t  262 (921)
                      +....
T Consensus       149 Wk~~y  153 (1062)
T KOG1912|consen  149 WKYDY  153 (1062)
T ss_pred             ecccc
Confidence            77653

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=94.76  E-value=0.063  Score=63.03  Aligned_cols=95  Identities=22%  Similarity=0.213  Sum_probs=66.4

Q ss_pred             CeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCC-
Q 002446          412 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-  490 (921)
Q Consensus       412 pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~D-  490 (921)
                      .=+.+.|||-|+||+|--..|  |.+|--...              .   .++|=.|+ .|+-+.|||+.+||++=|-- 
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G--I~lWGG~~f--------------~---r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p  271 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG--IALWGGESF--------------D---RIQRFYHP-GVQFIDFSPNEKYLVTYSPEP  271 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc--eeeecCccH--------------H---HHHhccCC-CceeeecCCccceEEEecCCc
Confidence            346799999999999988887  789943321              1   22232232 39999999999999987642 


Q ss_pred             ----------CcEEEEecCCCCCceeecCCCCCcccccCCcCCccccCCCCC
Q 002446          491 ----------GTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNL  532 (921)
Q Consensus       491 ----------gTVhVWdi~~~g~~~~l~~H~~~~~~~~~~~~~~~~r~~~~s  532 (921)
                                ..+.||||.++....++..-      ....+.-+.|||+..-
T Consensus       272 ~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~------~~~~~~WP~frWS~Dd  317 (698)
T KOG2314|consen  272 IIVEEDDNEGQQLIIWDIATGLLKRSFPVI------KSPYLKWPIFRWSHDD  317 (698)
T ss_pred             cccCcccCCCceEEEEEccccchhcceecc------CCCccccceEEeccCC
Confidence                      46899999998666666432      2234555677887654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.64  E-value=0.12  Score=61.77  Aligned_cols=77  Identities=18%  Similarity=0.301  Sum_probs=60.4

Q ss_pred             CeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEe-cccccccEEEEEEccCCCEEEEEeCC
Q 002446          412 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGLTNAVIQDISFSDDSNWIMISSSR  490 (921)
Q Consensus       412 pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~-RG~t~a~I~sIaFSPDg~~LAsgS~D  490 (921)
                      .|-.+-|+|.=.++|++-.+|. +-|..+.-               +.++++. +|...  ..++||.|||+.||+|-.|
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~ge-lli~R~n~---------------qRlwtip~p~~~v--~~sL~W~~DGkllaVg~kd   83 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGE-LLIHRLNW---------------QRLWTIPIPGENV--TASLCWRPDGKLLAVGFKD   83 (665)
T ss_pred             ceEEEEEcCccchhheeccCCc-EEEEEecc---------------ceeEeccCCCCcc--ceeeeecCCCCEEEEEecC
Confidence            4666889999999999999997 55666552               3456665 44321  2499999999999999999


Q ss_pred             CcEEEEecCCCCCcee
Q 002446          491 GTSHLFAINPLGGSVN  506 (921)
Q Consensus       491 gTVhVWdi~~~g~~~~  506 (921)
                      |||+|-|+.+++....
T Consensus        84 G~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   84 GTIRLHDVEKGGRLVS   99 (665)
T ss_pred             CeEEEEEccCCCceec
Confidence            9999999999877665

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.63  E-value=0.12  Score=63.08  Aligned_cols=94  Identities=20%  Similarity=0.213  Sum_probs=69.8

Q ss_pred             cccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEE
Q 002446          384 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l  463 (921)
                      +=+.+.|.|.+++....-  .+...|...      +-+|.++||||.||+ +.|..+.+.            ...+.+.+
T Consensus        53 ~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~------------~~~~~~df  111 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTD------------DEITQYDF  111 (846)
T ss_pred             eeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCc-EEEeeccCC------------ccceeEec
Confidence            345678999999876542  455566554      789999999999998 788887764            22345677


Q ss_pred             ecccccccEEEEEEccC-----CCEEEEEeCCCcEEEEecCCCCCc
Q 002446          464 QRGLTNAVIQDISFSDD-----SNWIMISSSRGTSHLFAINPLGGS  504 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSPD-----g~~LAsgS~DgTVhVWdi~~~g~~  504 (921)
                      +|     .|.+|+++||     ++.+++|+..| +.++.-+=.|..
T Consensus       112 ~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk  151 (846)
T KOG2066|consen  112 KR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK  151 (846)
T ss_pred             CC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence            65     3889999999     88899999999 878765444433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.44  E-value=0.62  Score=54.72  Aligned_cols=51  Identities=12%  Similarity=0.142  Sum_probs=41.5

Q ss_pred             cEEEEEECCCCcEEEEEeCCCCEEEEEEcC--CEEEEEeCC----EEEEEECCCCcE
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRCSS--RVVAICQAA----QVHCFDAATLEI  256 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S~--riLAVa~d~----~I~IwDl~T~~~  256 (921)
                      ..+.++|+.+++....+.|+..-..-+|++  +.||.+..+    .|+++|+.+.+.
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~  274 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL  274 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc
Confidence            468899999999988888888777888874  777776543    899999998773

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=94.37  E-value=0.11  Score=58.32  Aligned_cols=105  Identities=14%  Similarity=0.194  Sum_probs=72.2

Q ss_pred             ccCCCCEEEEEECCCC----ceEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeE
Q 002446          385 DADNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH  459 (921)
Q Consensus       385 s~~~~G~V~IwDl~s~----~~l~~~~aH~~pIsaLaFSP-dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~  459 (921)
                      .+...|.|.++|+..+    .-.++---|.++|++|..=. ++++|++.+-+|+ |++||..--..+           .-
T Consensus       269 ~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~-----------~~  336 (425)
T KOG2695|consen  269 NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKCK-----------KS  336 (425)
T ss_pred             ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhcc-----------cc
Confidence            3567799999999865    23334446899999987666 8899999999998 999998753110           01


Q ss_pred             EEEEeccccccc-EEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 002446          460 LYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPLG  502 (921)
Q Consensus       460 l~~l~RG~t~a~-I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g  502 (921)
                      +... .||.+.. -.-+-..+....++++++|--.+||.+..+.
T Consensus       337 V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  337 VMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             eeee-ecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            2222 3543221 1122345677788889999999999998753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.31  E-value=5.7  Score=45.67  Aligned_cols=57  Identities=7%  Similarity=0.032  Sum_probs=42.4

Q ss_pred             cEEEEEECCCCcEEEEEeCCCCEEE-EEE-cCCEEEEEeCCEEEEEECCCCcEEEEEec
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYS-VRC-SSRVVAICQAAQVHCFDAATLEIEYAILT  262 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s~V~s-V~~-S~riLAVa~d~~I~IwDl~T~~~l~tL~t  262 (921)
                      +.|.-+|.+||+.+-+.+....+.+ ..+ ..++++...+++|+.+|+.|++.+++...
T Consensus       130 g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  188 (394)
T PRK11138        130 GQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL  188 (394)
T ss_pred             CEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence            5688899999999888877655442 122 34444446678999999999999988764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=94.02  E-value=0.28  Score=53.94  Aligned_cols=72  Identities=19%  Similarity=0.299  Sum_probs=48.6

Q ss_pred             EEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEE
Q 002446          416 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL  495 (921)
Q Consensus       416 LaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhV  495 (921)
                      ++.+.||++||.--+  +.|-|=..... .         ++........+. ....-+.++||||+..||.+.+.|||+|
T Consensus         3 ~~~~~~Gk~lAi~qd--~~iEiRsa~Dd-f---------~si~~kcqVpkD-~~PQWRkl~WSpD~tlLa~a~S~G~i~v   69 (282)
T PF15492_consen    3 LALSSDGKLLAILQD--QCIEIRSAKDD-F---------SSIIGKCQVPKD-PNPQWRKLAWSPDCTLLAYAESTGTIRV   69 (282)
T ss_pred             eeecCCCcEEEEEec--cEEEEEeccCC-c---------hheeEEEecCCC-CCchheEEEECCCCcEEEEEcCCCeEEE
Confidence            678899999998543  34666555443 1         111111223222 2233778999999999999999999999


Q ss_pred             EecCC
Q 002446          496 FAINP  500 (921)
Q Consensus       496 Wdi~~  500 (921)
                      ||+..
T Consensus        70 fdl~g   74 (282)
T PF15492_consen   70 FDLMG   74 (282)
T ss_pred             Eeccc
Confidence            99854

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=93.77  E-value=0.11  Score=60.71  Aligned_cols=93  Identities=15%  Similarity=0.253  Sum_probs=66.9

Q ss_pred             EECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEE
Q 002446          395 RDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQD  474 (921)
Q Consensus       395 wDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~s  474 (921)
                      |.-.+...-..+.+-.-|+..++|||.|++|++....|  |.+|+-...              ..+.++    .+..|..
T Consensus        17 ~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~--V~~~~g~~~--------------~~l~~~----~~~~V~~   76 (561)
T COG5354          17 WNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG--VECWGGPSK--------------AKLVRF----RHPDVKY   76 (561)
T ss_pred             ecCccccccccccccCcchhheeecCcchheehhhccc--eEEccccch--------------hheeee----ecCCcee
Confidence            55455444455555677999999999999999987765  899976543              122233    2346999


Q ss_pred             EEEccCCCEEEEEeCCCc---------------EEEEecCCCCCceee
Q 002446          475 ISFSDDSNWIMISSSRGT---------------SHLFAINPLGGSVNF  507 (921)
Q Consensus       475 IaFSPDg~~LAsgS~DgT---------------VhVWdi~~~g~~~~l  507 (921)
                      +.|||.++||.+=+....               +.|||+..+.-...+
T Consensus        77 ~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf  124 (561)
T COG5354          77 LDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF  124 (561)
T ss_pred             cccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec
Confidence            999999999999877665               888998775444444

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.65  E-value=0.37  Score=58.49  Aligned_cols=104  Identities=18%  Similarity=0.231  Sum_probs=74.3

Q ss_pred             cccCCCCEEEEEECCCC-ceEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 002446          384 PDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY  461 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~-~~l~~~~aH~~pIsaLaFSP-dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~  461 (921)
                      ++...+-.|..||+.+. .++-.+..-...-+.|+++- ++..||+  ..|+.|+|||+..+   +          ..+.
T Consensus       131 atcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas--shg~~i~vwd~r~g---s----------~pl~  195 (1081)
T KOG0309|consen  131 ATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS--SHGNDIFVWDLRKG---S----------TPLC  195 (1081)
T ss_pred             eeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh--ccCCceEEEeccCC---C----------cceE
Confidence            34455678999999886 35555554445667789987 6777765  56778999999886   1          2345


Q ss_pred             EEecccccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCCCc
Q 002446          462 RLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGS  504 (921)
Q Consensus       462 ~l~RG~t~a~I~sIaFSP-Dg~~LAsgS~DgTVhVWdi~~~g~~  504 (921)
                      .+++  +.+.|+.++|.. .-..+.+.++||||+.|+.+.....
T Consensus       196 s~K~--~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  196 SLKG--HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             Eecc--cceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence            6654  345699999954 4456788999999999999875443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=93.58  E-value=0.96  Score=51.69  Aligned_cols=59  Identities=24%  Similarity=0.318  Sum_probs=47.2

Q ss_pred             ccccCCCCEEEEEECCCCceEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCC
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~-aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g  443 (921)
                      +.+++.|+.|+|-.+..--.+..|- +|+.-|+.|+.-++- +|+++|.|+| +++||+..+
T Consensus       166 IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~t-lr~Wd~~sg  225 (390)
T KOG3914|consen  166 IITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKT-LRLWDITSG  225 (390)
T ss_pred             EEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCc-EEEEecccC
Confidence            3456778888887666666666665 899999999998654 5999999998 899999987

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=93.24  E-value=0.22  Score=40.64  Aligned_cols=30  Identities=10%  Similarity=0.298  Sum_probs=28.0

Q ss_pred             cccEEEEEEccCCCEEEEEeCCCcEEEEec
Q 002446          469 NAVIQDISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi  498 (921)
                      .+.|..++|||....||.++.||.|.||++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            345999999999999999999999999999

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.15  E-value=9.7  Score=43.78  Aligned_cols=89  Identities=11%  Similarity=0.031  Sum_probs=48.2

Q ss_pred             CCEEEEEECCCCceEEEeccCCC-CeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          389 VGMVIVRDIVSKNVIAQFRAHKS-PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       389 ~G~V~IwDl~s~~~l~~~~aH~~-pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      +|.|..+|..+++.+.....-.. ..++...  .+.+|..++.+|. +.++|..++              +.+++.+-+.
T Consensus       303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~-l~~ld~~tG--------------~~~~~~~~~~  365 (394)
T PRK11138        303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGY-LHWINREDG--------------RFVAQQKVDS  365 (394)
T ss_pred             CCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCE-EEEEECCCC--------------CEEEEEEcCC
Confidence            45666666666665543321110 1111111  1445667888987 788898876              3344443221


Q ss_pred             ccccEE-EEEEccCCCEEEEEeCCCcEEEEec
Q 002446          468 TNAVIQ-DISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       468 t~a~I~-sIaFSPDg~~LAsgS~DgTVhVWdi  498 (921)
                      .  .+. ...+  .+..|.+++.||+++.|++
T Consensus       366 ~--~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        366 S--GFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             C--cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            1  121 1122  2457888899999998875

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=93.11  E-value=0.18  Score=56.60  Aligned_cols=113  Identities=16%  Similarity=0.195  Sum_probs=82.3

Q ss_pred             CCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          388 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      .+-.|-+-|++++.. ..|. .++.|-++.|.-.+.++..+...|. |-+.|+.....|.         .++...+.   
T Consensus       232 ~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG~---------~~~a~rly---  296 (425)
T KOG2695|consen  232 LSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQGN---------GWCAQRLY---  296 (425)
T ss_pred             ccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccCC---------CcceEEEE---
Confidence            345677788887743 3454 5678999999999999999999997 7899998752222         34444453   


Q ss_pred             ccccEEEEEEcc-CCCEEEEEeCCCcEEEEecCCCCC---ceeecCCCCCcc
Q 002446          468 TNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGG---SVNFQPTDANFT  515 (921)
Q Consensus       468 t~a~I~sIaFSP-Dg~~LAsgS~DgTVhVWdi~~~g~---~~~l~~H~~~~~  515 (921)
                      +...|+++..=. ++++|.+++++|+|++||+.-.+.   .....+|.+...
T Consensus       297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a  348 (425)
T KOG2695|consen  297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA  348 (425)
T ss_pred             cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc
Confidence            233477777655 789999999999999999987666   556678865433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=93.10  E-value=0.9  Score=59.19  Aligned_cols=115  Identities=11%  Similarity=0.051  Sum_probs=67.5

Q ss_pred             ccCCCCEEEEEECCCCceEEEeccC---------------CCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCC
Q 002446          385 DADNVGMVIVRDIVSKNVIAQFRAH---------------KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSS  449 (921)
Q Consensus       385 s~~~~G~V~IwDl~s~~~l~~~~aH---------------~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s  449 (921)
                      +....+.|++||..++... .+.+.               -.....|+|+|||+.|..++.+.+.|++||+.++......
T Consensus       700 ad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        700 AMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             EECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence            3345678999998776542 22211               1234569999999977777666567999998864100000


Q ss_pred             ccCCCCceeEEEEEec--cc----ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 002446          450 ACDAGTSYVHLYRLQR--GL----TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       450 ~~~~~~~~~~l~~l~R--G~----t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~  501 (921)
                      .++.. ....++.+-.  |.    .-.....|+|++||+.+++-+.+++|++||..+.
T Consensus       779 gg~~~-~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg  835 (1057)
T PLN02919        779 GGDPT-FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK  835 (1057)
T ss_pred             ecccc-cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence            00000 0000011100  00    0011468999999999999999999999998753

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.85  E-value=0.26  Score=59.65  Aligned_cols=101  Identities=10%  Similarity=0.160  Sum_probs=73.6

Q ss_pred             CCCCEEEEEECCCCceEE-EeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 002446          387 DNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR  465 (921)
Q Consensus       387 ~~~G~V~IwDl~s~~~l~-~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~R  465 (921)
                      ...|.|.+|.-..+.... ...+-.+.+..++.|++..+.|.|+..|. |-||.+....+.           ..+| +.+
T Consensus        52 sS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p~-----------~~~~-~t~  118 (726)
T KOG3621|consen   52 SSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELPR-----------DLDY-VTP  118 (726)
T ss_pred             cccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCCC-----------ccee-ecc
Confidence            456899999877665322 22234556777899999999998888886 899988764111           1222 223


Q ss_pred             ccc--cccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          466 GLT--NAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       466 G~t--~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                      ++.  ..+|++++||+|++.|.+|-+.|+|+.-.++.
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            333  44699999999999999999999999988876

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=92.79  E-value=0.23  Score=55.68  Aligned_cols=81  Identities=27%  Similarity=0.331  Sum_probs=56.1

Q ss_pred             CCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc--------------ccccEEEEE
Q 002446          411 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL--------------TNAVIQDIS  476 (921)
Q Consensus       411 ~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~--------------t~a~I~sIa  476 (921)
                      .-|+++.|+.+|.+||||+.+|+ +-+|.-.....             +.|.++...              -.-+|..|.
T Consensus        26 diis~vef~~~Ge~LatGdkgGR-Vv~f~r~~~~~-------------~ey~~~t~fqshepEFDYLkSleieEKinkIr   91 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGR-VVLFEREKLYK-------------GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIR   91 (433)
T ss_pred             cceeeEEeecccceEeecCCCCe-EEEeecccccc-------------cceeeeeeeeccCcccchhhhhhhhhhhhhce
Confidence            35899999999999999999998 67885443200             011111110              112488999


Q ss_pred             EccCCC--EEEEEeCCCcEEEEecCCCCCce
Q 002446          477 FSDDSN--WIMISSSRGTSHLFAINPLGGSV  505 (921)
Q Consensus       477 FSPDg~--~LAsgS~DgTVhVWdi~~~g~~~  505 (921)
                      |.+++.  .+...+.|.||++|.+...+...
T Consensus        92 w~~~~n~a~FLlstNdktiKlWKi~er~~k~  122 (433)
T KOG1354|consen   92 WLDDGNLAEFLLSTNDKTIKLWKIRERGSKK  122 (433)
T ss_pred             ecCCCCccEEEEecCCcceeeeeeecccccc
Confidence            988765  57788899999999998754433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=92.63  E-value=0.2  Score=60.34  Aligned_cols=98  Identities=15%  Similarity=0.237  Sum_probs=71.4

Q ss_pred             cccCCCCEEEEEECCCC---------------ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCC
Q 002446          384 PDADNVGMVIVRDIVSK---------------NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTS  448 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~---------------~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~  448 (921)
                      +-++.+|.++|..+.+.               ..-.++.+|+..|.-+.|+-+.+.|-|.+.+| .|.||-+-.+ .+. 
T Consensus        30 AcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G-lIiVWmlykg-sW~-  106 (1189)
T KOG2041|consen   30 ACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG-LIIVWMLYKG-SWC-  106 (1189)
T ss_pred             EeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc-eEEEEeeecc-cHH-
Confidence            34556777777765432               12346789999999999999999999999998 5899988765 111 


Q ss_pred             CccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 002446          449 SACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF  496 (921)
Q Consensus       449 s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVW  496 (921)
                               ..+.. .|  ....|.+++|..||+.+++.-.||.|.|=
T Consensus       107 ---------EEMiN-nR--nKSvV~SmsWn~dG~kIcIvYeDGavIVG  142 (1189)
T KOG2041|consen  107 ---------EEMIN-NR--NKSVVVSMSWNLDGTKICIVYEDGAVIVG  142 (1189)
T ss_pred             ---------HHHhh-Cc--CccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence                     11111 12  23459999999999999999999887653

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=92.34  E-value=4.1  Score=43.97  Aligned_cols=43  Identities=19%  Similarity=0.111  Sum_probs=37.4

Q ss_pred             EEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECCCCcEEEEEec
Q 002446          220 HMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT  262 (921)
Q Consensus       220 ~tL~f~s~V~sV~~S~riLAVa~d~~I~IwDl~T~~~l~tL~t  262 (921)
                      ..|++.+...++.+...+|.+..++.|.||++.++++++++..
T Consensus       223 ~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  223 STIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             cEEEcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence            4788888888999988888887788999999999999998864

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=91.90  E-value=0.5  Score=52.24  Aligned_cols=104  Identities=13%  Similarity=0.125  Sum_probs=69.5

Q ss_pred             cccCCCCEEEEEECC-CCceEEE-eccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE
Q 002446          384 PDADNVGMVIVRDIV-SKNVIAQ-FRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL  460 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~-s~~~l~~-~~aH~~pIsaLaFSP-dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l  460 (921)
                      -+++.||.+.-||+. .++.+.+ .+-|+..|.++.=|| .+++++||+.|-+ |++||+..-             .+.+
T Consensus       182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm-------------~kPl  247 (339)
T KOG0280|consen  182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNM-------------GKPL  247 (339)
T ss_pred             EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcc-------------cCcc
Confidence            367889999999998 4445544 678999999998887 6999999999976 999999842             1112


Q ss_pred             EEEecccccccEEEEEEccCCC-EEEEEeCCCcEEEEecCCCCCc
Q 002446          461 YRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLGGS  504 (921)
Q Consensus       461 ~~l~RG~t~a~I~sIaFSPDg~-~LAsgS~DgTVhVWdi~~~g~~  504 (921)
                      +.-.   ...-|+-|.++|--. .|..+.+-.-.+|-+++.....
T Consensus       248 ~~~~---v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e  289 (339)
T KOG0280|consen  248 FKAK---VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE  289 (339)
T ss_pred             ccCc---cccceEEEEecchhhhHHHHHHHhcCceEEEecccccc
Confidence            2111   112267777777432 3334445555677777654443

>PRK02888 nitrous-oxide reductase; Validated

Probab=91.79  E-value=1.6  Score=53.25  Aligned_cols=114  Identities=12%  Similarity=0.112  Sum_probs=67.0

Q ss_pred             cCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEe---cCCCE-----------EEEEeCCCCC----CCC
Q 002446          386 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS---VQGHN-----------INIFKIIPGI----LGT  447 (921)
Q Consensus       386 ~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS---~DGt~-----------IrIWdi~~g~----~~~  447 (921)
                      ....+++.+.|..+.++..++.--. .-..++|+|||+++.+++   ..|..           +.+|++....    .|.
T Consensus       211 ~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK  289 (635)
T PRK02888        211 KKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGK  289 (635)
T ss_pred             cceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCC
Confidence            3456889999999988888876433 235578999999998875   32221           2333332100    000


Q ss_pred             C--------CccCCCC----ceeEEEEEecccccccEEEEEEccCCCEEEEEeC-CCcEEEEecCCCCC
Q 002446          448 S--------SACDAGT----SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGG  503 (921)
Q Consensus       448 ~--------s~~~~~~----~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~-DgTVhVWdi~~~g~  503 (921)
                      .        +.-+...    ....++.+.-|   .....|++||||+|+.+++. +.||.|.|+.+...
T Consensus       290 ~~~V~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        290 FKTIGGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             EEEECCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence            0        0000000    00122223222   22568999999999887665 89999999988543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=91.67  E-value=0.5  Score=56.65  Aligned_cols=58  Identities=17%  Similarity=0.376  Sum_probs=48.5

Q ss_pred             cccCCCCEEEEEECCCCceEEEeccCCCCeE-EEEECCCCCEEEEEecCCCEEEEEeCCCC
Q 002446          384 PDADNVGMVIVRDIVSKNVIAQFRAHKSPIS-ALCFDPSGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       384 ~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIs-aLaFSPdGtlLATaS~DGt~IrIWdi~~g  443 (921)
                      +....+|.|.++-+. -+.+.+|.-|..+++ ++||.|||++||.|=.||+ |+|-|+..+
T Consensus        36 A~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~   94 (665)
T KOG4640|consen   36 ATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKG   94 (665)
T ss_pred             heeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCC
Confidence            444567878887776 566788887877887 9999999999999999998 999999986

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=91.49  E-value=17  Score=43.40  Aligned_cols=57  Identities=11%  Similarity=0.069  Sum_probs=39.3

Q ss_pred             cEEEEEECCCCcEEEEEeCCCC-------E--EEEEE-c-CCEEEEEeCCEEEEEECCCCcEEEEEec
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSP-------I--YSVRC-S-SRVVAICQAAQVHCFDAATLEIEYAILT  262 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s~-------V--~sV~~-S-~riLAVa~d~~I~IwDl~T~~~l~tL~t  262 (921)
                      +.|.-.|++||+.+-+.+....       +  ..+.. . .++++...++.|+.+|+.|++.++....
T Consensus        71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            4577779999988877655322       1  11223 3 4555557789999999999999988754

The alignment model contains an 8-bladed beta-propeller.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.42  E-value=29  Score=39.23  Aligned_cols=71  Identities=20%  Similarity=0.333  Sum_probs=48.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEe
Q 002446          409 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS  488 (921)
Q Consensus       409 H~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS  488 (921)
                      -.+.|-+|+|+++|.++|..|-.|..+.+||..++              ..+-.    ..-..+..++-.+++ |+++++
T Consensus       215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg--------------~~~~~----~~l~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG--------------RLLGS----VPLPDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC--------------CEeec----cccCceeeeeecCCc-eEEeCC
Confidence            35789999999999999999988889999999987              12111    122346677777777 555543


Q ss_pred             CCCcEEEEecCCC
Q 002446          489 SRGTSHLFAINPL  501 (921)
Q Consensus       489 ~DgTVhVWdi~~~  501 (921)
                       .|.  ++.+...
T Consensus       276 -~G~--~~~~~~~  285 (305)
T PF07433_consen  276 -QGQ--LIRLSPD  285 (305)
T ss_pred             -Ccc--EEEccCc
Confidence             343  5555544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=91.07  E-value=0.14  Score=55.68  Aligned_cols=57  Identities=23%  Similarity=0.279  Sum_probs=48.0

Q ss_pred             ccCCCCEEEEEECCCCc-eEEEeccCCCCeEEEEECC-CCCEEEEEecCCCEEEEEeCCC
Q 002446          385 DADNVGMVIVRDIVSKN-VIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIP  442 (921)
Q Consensus       385 s~~~~G~V~IwDl~s~~-~l~~~~aH~~pIsaLaFSP-dGtlLATaS~DGt~IrIWdi~~  442 (921)
                      .+..+|.|.|||..+.. +...+++|+.+|.-+-|.| ++..|.|||.||. +--||..+
T Consensus       197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~  255 (319)
T KOG4714|consen  197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDAST  255 (319)
T ss_pred             EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCC
Confidence            45678999999999875 4556789999999999999 6899999999997 56777764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=90.96  E-value=0.34  Score=56.48  Aligned_cols=97  Identities=18%  Similarity=0.282  Sum_probs=72.5

Q ss_pred             eEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEcc--
Q 002446          402 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--  479 (921)
Q Consensus       402 ~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSP--  479 (921)
                      +...|..|.+-|..|-|+..|+.|+++|+|-+ |-+||...+              .....+.-||... |..-.|=|  
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~-vv~WdW~~~--------------~~~l~f~SGH~~N-vfQaKFiP~s  197 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQ-VVVWDWVSG--------------SPKLSFESGHCNN-VFQAKFIPFS  197 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccce-EEeehhhcc--------------Ccccccccccccc-hhhhhccCCC
Confidence            44567899999999999999999999999975 889999875              2334566676554 44445755  


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCce---eecCCCCCc
Q 002446          480 DSNWIMISSSRGTSHLFAINPLGGSV---NFQPTDANF  514 (921)
Q Consensus       480 Dg~~LAsgS~DgTVhVWdi~~~g~~~---~l~~H~~~~  514 (921)
                      +.+-+++.+.||-|++=.+...+...   .+..|.+.+
T Consensus       198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~v  235 (559)
T KOG1334|consen  198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPV  235 (559)
T ss_pred             CCcCceeccccCceeeeeeccccceecceecccccCcc
Confidence            55779999999999998887665543   334555443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=90.94  E-value=0.48  Score=52.60  Aligned_cols=103  Identities=17%  Similarity=0.249  Sum_probs=68.1

Q ss_pred             ccccCCCCEEEEEECCCCc----------------eEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCC
Q 002446          383 FPDADNVGMVIVRDIVSKN----------------VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG  446 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~----------------~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~  446 (921)
                      +.-....|.|++-|+....                .+.-|.+-.+.|+.+.|+++|+++++-+.-  .++|||+....  
T Consensus       237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl--tvkiwDvnm~k--  312 (460)
T COG5170         237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL--TVKIWDVNMAK--  312 (460)
T ss_pred             EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc--eEEEEeccccc--
Confidence            3334456889999987321                112233445789999999999999987665  49999998641  


Q ss_pred             CCCccCCCCceeEEEEE--ec--------cc-ccc--cEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          447 TSSACDAGTSYVHLYRL--QR--------GL-TNA--VIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       447 ~~s~~~~~~~~~~l~~l--~R--------G~-t~a--~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                                 .++++.  +.        -. ..|  .=..|.||-|.+.+.+||-.+..-|+...+
T Consensus       313 -----------~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         313 -----------NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             -----------CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence                       112211  00        00 011  124689999999999999999888887554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=90.80  E-value=39  Score=39.60  Aligned_cols=48  Identities=17%  Similarity=0.331  Sum_probs=39.9

Q ss_pred             CcEEEEEECCCCcEEEEEeCC-CCEEEEEEc--CCEEEEEeCCEEEEEECCC
Q 002446          205 PTVVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQAAQVHCFDAAT  253 (921)
Q Consensus       205 ~~tVrIWDL~Tg~~V~tL~f~-s~V~sV~~S--~riLAVa~d~~I~IwDl~T  253 (921)
                      |..|+||+. .|+.+.++.++ +.|..+.|+  .++|+|..++.+++||+..
T Consensus        60 p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   60 PNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             CcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence            347999997 57788888885 689999996  4778889999999999873

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=90.17  E-value=0.91  Score=54.21  Aligned_cols=58  Identities=17%  Similarity=0.270  Sum_probs=47.2

Q ss_pred             ccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCC
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       383 ~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g  443 (921)
                      ++-+..||.|++||...+.  .++..+.-..+.++|+|+|.++++|+..|. +.+||+.-.
T Consensus       274 LvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALs  331 (545)
T PF11768_consen  274 LVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALS  331 (545)
T ss_pred             EEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeecC
Confidence            3456789999999987763  334445566788999999999999999997 899999875

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.05  E-value=0.86  Score=52.86  Aligned_cols=115  Identities=16%  Similarity=0.184  Sum_probs=77.1

Q ss_pred             CCCEEEEEECCCCc-eEEEec-cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCC-CC-CCCCccCCCCceeEEEEE
Q 002446          388 NVGMVIVRDIVSKN-VIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG-IL-GTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       388 ~~G~V~IwDl~s~~-~l~~~~-aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g-~~-~~~s~~~~~~~~~~l~~l  463 (921)
                      ..|.|.|+|-.... .+..++ -|.+||.++.++|-|...++.+..| +|.-|..... .. ..--.... ..-..+|.+
T Consensus       120 ~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g-mVEyWs~e~~~qfPr~~l~~~~-K~eTdLy~f  197 (558)
T KOG0882|consen  120 KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG-MVEYWSAEGPFQFPRTNLNFEL-KHETDLYGF  197 (558)
T ss_pred             cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc-eeEeecCCCcccCccccccccc-cccchhhcc
Confidence            45788999876543 344444 7999999999999999999988887 5999988741 00 00000000 000112322


Q ss_pred             ecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCcee
Q 002446          464 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN  506 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~  506 (921)
                      ..-  .....++.|||+|..+++-+.|.+|++|+..++.-...
T Consensus       198 ~K~--Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  198 PKA--KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             ccc--ccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence            211  12378999999999999999999999999987644333

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=89.30  E-value=0.43  Score=52.02  Aligned_cols=95  Identities=14%  Similarity=0.245  Sum_probs=61.7

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCC-EEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGt-lLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      +..++|+++-.+.+..-+.-...|++++-.|.-+ ++++|+.|| .+-|||.... .-.          .-++.   . +
T Consensus       159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg-~~~l~d~rn~-~~p----------~S~l~---a-h  222 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDG-IVGLWDARNV-AMP----------VSLLK---A-H  222 (319)
T ss_pred             cceeeecccccccccccccccccchhhhCCcccccEEEEecCCC-eEEEEEcccc-cch----------HHHHH---H-h
Confidence            4456677654332211111123499999999655 555566666 6999999864 100          01111   2 2


Q ss_pred             cccEEEEEEcc-CCCEEEEEeCCCcEEEEecCC
Q 002446          469 NAVIQDISFSD-DSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       469 ~a~I~sIaFSP-Dg~~LAsgS~DgTVhVWdi~~  500 (921)
                      .+.|+.|-|.| ++..|.+++.||.+--||-++
T Consensus       223 k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  223 KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            35699999998 788999999999999999875

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.05  E-value=1.2  Score=50.75  Aligned_cols=103  Identities=12%  Similarity=0.173  Sum_probs=58.6

Q ss_pred             CCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccc
Q 002446          389 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       389 ~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t  468 (921)
                      .+.+.|||+.+++....... ...+....|||||+.||-....  .|.++++..+....-...+ ...   ++   -|..
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~--nly~~~~~~~~~~~lT~dg-~~~---i~---nG~~   91 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDN--NLYLRDLATGQETQLTTDG-EPG---IY---NGVP   91 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETT--EEEEESSTTSEEEESES---TTT---EE---ESB-
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecC--ceEEEECCCCCeEEecccc-cee---EE---cCcc
Confidence            36799999999866443333 6789999999999999998753  5888887654110000000 000   00   0100


Q ss_pred             --------cccEEEEEEccCCCEEEEEeC-CCcEEEEecCCC
Q 002446          469 --------NAVIQDISFSDDSNWIMISSS-RGTSHLFAINPL  501 (921)
Q Consensus       469 --------~a~I~sIaFSPDg~~LAsgS~-DgTVhVWdi~~~  501 (921)
                              -..-..+-|||||++||.... +..|+.+.+..+
T Consensus        92 dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~  133 (353)
T PF00930_consen   92 DWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY  133 (353)
T ss_dssp             -HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE
T ss_pred             ceeccccccccccceEECCCCCEEEEEEECCcCCceEEeecc
Confidence                    001135889999999998654 445666655443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=88.86  E-value=0.21  Score=61.41  Aligned_cols=106  Identities=10%  Similarity=0.146  Sum_probs=81.8

Q ss_pred             cccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCC-EEEEEeCCCCCCCCCCccCCCCceeEE
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH-NINIFKIIPGILGTSSACDAGTSYVHL  460 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt-~IrIWdi~~g~~~~~s~~~~~~~~~~l  460 (921)
                      +++-+...|.|++|++.+|....+..+|.++|+.|.=+.||.++.|.|.-.. ..-+|++...             ....
T Consensus      1115 hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~-------------~~~~ 1181 (1516)
T KOG1832|consen 1115 HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST-------------GGPR 1181 (1516)
T ss_pred             eEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc-------------cCcc
Confidence            5566678899999999999999999999999999999999999888765433 4568887652             1112


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCcee
Q 002446          461 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN  506 (921)
Q Consensus       461 ~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~  506 (921)
                      +.+. +     =.++.||...++=+.|+....++|||+.+.....+
T Consensus      1182 Hsf~-e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1182 HSFD-E-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             cccc-c-----cceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence            2332 2     23688998888888898888999999998644433

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=88.74  E-value=1.1  Score=36.59  Aligned_cols=31  Identities=16%  Similarity=0.390  Sum_probs=27.7

Q ss_pred             CCCeEEEEECCCCCEEEEEecCCCEEEEEeCC
Q 002446          410 KSPISALCFDPSGILLVTASVQGHNINIFKII  441 (921)
Q Consensus       410 ~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~  441 (921)
                      ..+|.+++|+|...+||.++.+|. |.||++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCe-EEEEECC
Confidence            357999999999999999999997 8999883

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=88.06  E-value=1.1  Score=51.08  Aligned_cols=57  Identities=26%  Similarity=0.364  Sum_probs=45.1

Q ss_pred             cEEEEEECCCCcEEEEEeCCCCEEEEEEc----CCEEEEEe-CCEEEEEECCCCcEEEEEec
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS----SRVVAICQ-AAQVHCFDAATLEIEYAILT  262 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S----~riLAVa~-d~~I~IwDl~T~~~l~tL~t  262 (921)
                      +.|=+||++|++.+..+....++.+|..+    +.++++.. ++.+.+||+.|++.+++++.
T Consensus       269 teVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  269 TEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             eEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            67888999999999999998889899997    35556654 57999999999999998864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.02  E-value=22  Score=42.17  Aligned_cols=58  Identities=19%  Similarity=0.289  Sum_probs=38.3

Q ss_pred             CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 002446          422 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       422 GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~  500 (921)
                      |.+|+..+.+  .|.+||+.++              ..+.++.    -..|..|.||+||+++|..+.+ ++.|++.+.
T Consensus       117 G~LL~~~~~~--~i~~yDw~~~--------------~~i~~i~----v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  117 GNLLGVKSSD--FICFYDWETG--------------KLIRRID----VSAVKYVIWSDDGELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             SSSEEEEETT--EEEEE-TTT----------------EEEEES----S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred             CcEEEEECCC--CEEEEEhhHc--------------ceeeEEe----cCCCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence            9999988776  4899999985              3344432    2238999999999999999865 788877643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=87.82  E-value=0.62  Score=57.33  Aligned_cols=98  Identities=18%  Similarity=0.269  Sum_probs=70.1

Q ss_pred             CCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecc
Q 002446          387 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG  466 (921)
Q Consensus       387 ~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG  466 (921)
                      ...|.|.|| +++|++-....- .-.+++|||.|.--.||.+=..|- +.+|...+.               ..++..- 
T Consensus        38 er~GSVtIf-adtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~---------------e~htv~~-   98 (1416)
T KOG3617|consen   38 ERGGSVTIF-ADTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTT---------------ETHTVVE-   98 (1416)
T ss_pred             CCCceEEEE-ecCCCCCccccc-ceehhhhccChHHHHHhhccccce-eEEEecCCc---------------eeeeecc-
Confidence            345778887 345554332221 112456999999999999988885 899987763               2223322 


Q ss_pred             cccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCC
Q 002446          467 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG  503 (921)
Q Consensus       467 ~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~  503 (921)
                      .+.+.|+-+.|||||..+.++-.-|.+|+|.+.--|.
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~  135 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE  135 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence            2457799999999999999999999999999875433

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=87.39  E-value=5  Score=38.76  Aligned_cols=65  Identities=17%  Similarity=0.214  Sum_probs=44.6

Q ss_pred             eEEEEEC---CCC-CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEEe
Q 002446          413 ISALCFD---PSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS  488 (921)
Q Consensus       413 IsaLaFS---PdG-tlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS  488 (921)
                      |++|++.   -|| .-|+.||+|.. ||||+-..                .++++..   ...|++++-... ..||-+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~~e----------------~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l   60 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKGDE----------------IVAEITE---TDKVTSLCSLGG-GRFAYAL   60 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcE-EEEEeCCc----------------EEEEEec---ccceEEEEEcCC-CEEEEEe
Confidence            4555544   454 36888999975 99998653                3445432   245888877776 5688888


Q ss_pred             CCCcEEEEec
Q 002446          489 SRGTSHLFAI  498 (921)
Q Consensus       489 ~DgTVhVWdi  498 (921)
                      ..|||-||+-
T Consensus        61 ~NGTVGvY~~   70 (111)
T PF14783_consen   61 ANGTVGVYDR   70 (111)
T ss_pred             cCCEEEEEeC
Confidence            9999887754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=86.98  E-value=3.7  Score=50.17  Aligned_cols=241  Identities=15%  Similarity=0.183  Sum_probs=123.5

Q ss_pred             ccCCCCEEEEEECCCCceEEEec--cCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEE--
Q 002446          385 DADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL--  460 (921)
Q Consensus       385 s~~~~G~V~IwDl~s~~~l~~~~--aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l--  460 (921)
                      +.+.+|.|.||-+-.+.=...+-  ..++-|.+|+|+-||+.++.+-.||. |.|=.++-.               .+  
T Consensus        88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa-vIVGsvdGN---------------RIwg  151 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA-VIVGSVDGN---------------RIWG  151 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC-EEEEeeccc---------------eecc
Confidence            34667999999987765332222  44577899999999999998888886 434333321               11  


Q ss_pred             EEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcccccCCcCCccccCCCCCCCCCCCCc
Q 002446          461 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQ  540 (921)
Q Consensus       461 ~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l~~H~~~~~~~~~~~~~~~~r~~~~s~l~~~~~~  540 (921)
                      .+| .|..   ...+.||+|.+.+..+-..|.+|++|..-.   ...+-|-+..+...|..-+   +.......+|..+.
T Consensus       152 KeL-kg~~---l~hv~ws~D~~~~Lf~~ange~hlydnqgn---F~~Kl~~~c~Vn~tg~~s~---~~~kia~i~w~~g~  221 (1189)
T KOG2041|consen  152 KEL-KGQL---LAHVLWSEDLEQALFKKANGETHLYDNQGN---FERKLEKDCEVNGTGIFSN---FPTKIAEIEWNTGP  221 (1189)
T ss_pred             hhc-chhe---ccceeecccHHHHHhhhcCCcEEEeccccc---HHHhhhhceEEeeeeeecC---CCccccceeeccCc
Confidence            122 2322   336789999999988888999999997531   2222222221111111110   11123344453333


Q ss_pred             ccccCC-Ccee-----eeeeeEEecCCCCCCccccchhhhccC-----CccCCCcceeeeeeccCCCccccccCCccccc
Q 002446          541 SLCASG-PPVT-----LSVVSRIRNGNNGWRGTVSGAAAAATG-----RVSSLSGAIASSFHNCKGNSETYAAGSSLKIK  609 (921)
Q Consensus       541 ~l~~~~-~pv~-----ls~v~rI~~~~~~w~~~v~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  609 (921)
                      .-.+|| -|.-     -..|-.+|+.|.-  ..    +-..||     -.=...|++-|+   |.-..    +.-..+..
T Consensus       222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~--~P----vv~dtgm~~vgakWnh~G~vLAv---cG~~~----da~~~~d~  288 (1189)
T KOG2041|consen  222 YQPVPPDRPRLAVCYANGRMQIMRSENDP--EP----VVVDTGMKIVGAKWNHNGAVLAV---CGNDS----DADEPTDS  288 (1189)
T ss_pred             cccCCCCCCEEEEEEcCceehhhhhcCCC--CC----eEEecccEeecceecCCCcEEEE---ccCcc----cccCcccc
Confidence            222222 1330     1122334444421  11    112233     233456777666   52221    11113344


Q ss_pred             ccEEEEccCCcEEEEeeecccCCCcc--cCCCCCCCCCCCCCCCCceEEEeeeeeeecc
Q 002446          610 NHLLVFSPSGCMIQYALRISTGLDVT--MGVPGLGSAYDSVPEDDPRLVVEAIQKWNIC  666 (921)
Q Consensus       610 ~~L~v~sp~G~liqy~L~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vep~~~Wdvc  666 (921)
                      ...-.|+|-||++.|.=-|-.....-  ++ .+..++. -++..-.--.+.|--+|--|
T Consensus       289 n~v~Fysp~G~i~gtlkvpg~~It~lsWEg-~gLriA~-AvdsfiyfanIRP~ykWgy~  345 (1189)
T KOG2041|consen  289 NKVHFYSPYGHIVGTLKVPGSCITGLSWEG-TGLRIAI-AVDSFIYFANIRPEYKWGYI  345 (1189)
T ss_pred             ceEEEeccchhheEEEecCCceeeeeEEcC-CceEEEE-EecceEEEEeecccceEEEe
Confidence            56778999999999976654321110  00 0111110 01222233467888899877

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=86.69  E-value=70  Score=41.93  Aligned_cols=98  Identities=14%  Similarity=0.211  Sum_probs=59.6

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCC--EEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt--~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      ..|+|||-. +.+-..=..-..-=.+|+|=|+|.++|+--.++.  .|.+|.-.--.++             -+.+++-.
T Consensus       222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg-------------~f~l~~p~  287 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG-------------EFVLPFPL  287 (1265)
T ss_pred             eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc-------------ccccCCcc
Confidence            689999977 3321111122223346999999999999643321  3777753321111             13333333


Q ss_pred             ccccEEEEEEccCCCEEEE---EeCCCcEEEEecCCC
Q 002446          468 TNAVIQDISFSDDSNWIMI---SSSRGTSHLFAINPL  501 (921)
Q Consensus       468 t~a~I~sIaFSPDg~~LAs---gS~DgTVhVWdi~~~  501 (921)
                      ....|..++|+.++..||+   .....-|.+|-+..|
T Consensus       288 de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  288 DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            3333899999999999999   444445999987654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=86.66  E-value=1.6  Score=53.31  Aligned_cols=108  Identities=11%  Similarity=0.206  Sum_probs=74.0

Q ss_pred             EEEEECCC---CceEEEeccCCCCeEEEEECCCC-CEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc
Q 002446          392 VIVRDIVS---KNVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL  467 (921)
Q Consensus       392 V~IwDl~s---~~~l~~~~aH~~pIsaLaFSPdG-tlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~  467 (921)
                      -.||.+..   ..+...+-+|+.+|+.+-|+|.- ..|||++.|- .++.||+...             ...+|...-=+
T Consensus        93 aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt-~vh~wd~rSp-------------~~p~ys~~~w~  158 (1081)
T KOG0309|consen   93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDT-YVHAWDMRSP-------------HRPFYSTSSWR  158 (1081)
T ss_pred             hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccc-cceeeeccCC-------------Ccceeeeeccc
Confidence            45676653   33445566999999999999964 5899999995 5999999864             12334332111


Q ss_pred             ccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc-eeecCCCCCcc
Q 002446          468 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS-VNFQPTDANFT  515 (921)
Q Consensus       468 t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~-~~l~~H~~~~~  515 (921)
                      +.  -..++|+--.-.+.+.+..+-|+|||+..++-+ ..+++|...+.
T Consensus       159 s~--asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn  205 (1081)
T KOG0309|consen  159 SA--ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVN  205 (1081)
T ss_pred             cc--CceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeee
Confidence            22  346889865555556677788999999876655 46788766544

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.42  E-value=1.4  Score=55.81  Aligned_cols=56  Identities=20%  Similarity=0.477  Sum_probs=40.2

Q ss_pred             CCCCEEEEEECCCC-ceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCC
Q 002446          387 DNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       387 ~~~G~V~IwDl~s~-~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g  443 (921)
                      ...|.|...|.... .+...=..-.+||++++|+.||++|+.|=.+|. |.+||+..+
T Consensus       106 Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~  162 (1206)
T KOG2079|consen  106 TSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRA  162 (1206)
T ss_pred             cCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCC
Confidence            34466666666543 111111223579999999999999999999997 999999875

>PRK13616 lipoprotein LpqB; Provisional

Probab=86.25  E-value=4.6  Score=49.51  Aligned_cols=92  Identities=9%  Similarity=0.080  Sum_probs=53.7

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE--EEecc-
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY--RLQRG-  466 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~--~l~RG-  466 (921)
                      ..+.+++... .....+.+.  ..++-.|+|||+.|++.+.....+++.+-...              ..++  .+.-| 
T Consensus       379 s~Lwv~~~gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~--------------gql~~~~vd~ge  441 (591)
T PRK13616        379 SSLWVGPLGG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT--------------GQLARTPVDASA  441 (591)
T ss_pred             eEEEEEeCCC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCC--------------ceEEEEeccCch
Confidence            4566667533 222223333  37788999999999998765344444433211              0112  11111 


Q ss_pred             ---cccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 002446          467 ---LTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       467 ---~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                         .-...|.++.|||||++||... +|.|+|=-+.
T Consensus       442 ~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv  476 (591)
T PRK13616        442 VASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVE  476 (591)
T ss_pred             hhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence               0112499999999999999877 5667664443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=86.11  E-value=2.3  Score=50.02  Aligned_cols=96  Identities=26%  Similarity=0.396  Sum_probs=59.6

Q ss_pred             CEEEEEECCCCc--eEEEeccCCCCeEEEEECCCCCEEEEEec-CCC-EEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 002446          390 GMVIVRDIVSKN--VIAQFRAHKSPISALCFDPSGILLVTASV-QGH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQR  465 (921)
Q Consensus       390 G~V~IwDl~s~~--~l~~~~aH~~pIsaLaFSPdGtlLATaS~-DGt-~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~R  465 (921)
                      ..+.++|+.+++  .+..+.+|..   .-+|+|||++||-++. ||. .|-++|+...               .+.+|.+
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~---------------~~~~Lt~  279 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLDGK---------------NLPRLTN  279 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCCCC---------------cceeccc
Confidence            468899998875  3445556553   3689999998877654 443 2444455443               1222333


Q ss_pred             ccccccEEEEEEccCCCEEEEEeCC-CcEEEEecCCCCCce
Q 002446          466 GLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGGSV  505 (921)
Q Consensus       466 G~t~a~I~sIaFSPDg~~LAsgS~D-gTVhVWdi~~~g~~~  505 (921)
                      +...  -..=+|||||++|+-.|++ |.-.||-+...++..
T Consensus       280 ~~gi--~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~  318 (425)
T COG0823         280 GFGI--NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV  318 (425)
T ss_pred             CCcc--ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence            3221  2256799999999876664 556777777665544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=85.78  E-value=9.1  Score=48.36  Aligned_cols=58  Identities=12%  Similarity=0.189  Sum_probs=45.4

Q ss_pred             cccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCC
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII  441 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~  441 (921)
                      +++-+...|.||+||-...+....|.+-..||..|..+.||++|+..+.  +.+-|+++.
T Consensus       590 ~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t~  647 (794)
T PF08553_consen  590 YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDTL  647 (794)
T ss_pred             eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEEe
Confidence            4455677899999997666666778888899999999999998665443  347788864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=85.39  E-value=22  Score=38.35  Aligned_cols=53  Identities=11%  Similarity=0.134  Sum_probs=44.9

Q ss_pred             CCcEEEEEECCCC-----cEEEEEeCCCCEEEEEEcCCEEEEEeCCEEEEEECCCCcE
Q 002446          204 VPTVVHFYSLRSQ-----SYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEI  256 (921)
Q Consensus       204 ~~~tVrIWDL~Tg-----~~V~tL~f~s~V~sV~~S~riLAVa~d~~I~IwDl~T~~~  256 (921)
                      ..++|.+|.....     +.++++..+..+.+|.+.++.|+++..+...+.|+.++..
T Consensus       112 ~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~  169 (275)
T PF00780_consen  112 VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSP  169 (275)
T ss_pred             ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCc
Confidence            3468888877653     5778889999999999999999999899999999998764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=84.93  E-value=29  Score=39.23  Aligned_cols=121  Identities=21%  Similarity=0.256  Sum_probs=67.5

Q ss_pred             CEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCce-eEEEEEecccc
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY-VHLYRLQRGLT  468 (921)
Q Consensus       390 G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~-~~l~~l~RG~t  468 (921)
                      +.|.-||..+++. ..|......-..+.++..|.+++ + .+|  +.+++..++            .. ..+.....+..
T Consensus        47 ~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~-~-~~g--~~~~~~~~~------------~~~t~~~~~~~~~~  109 (307)
T COG3386          47 GRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIA-C-EHG--VRLLDPDTG------------GKITLLAEPEDGLP  109 (307)
T ss_pred             CeEEEecCCcCce-EEEECCCCcccceeecCCCeEEE-E-ccc--cEEEeccCC------------ceeEEeccccCCCC
Confidence            5677777776543 33433333334456666665444 3 333  577887554            12 33444445555


Q ss_pred             cccEEEEEEccCCCEEEEEeC---------CCcEEEEecCCCCCceee-cCCCCCcccccCCcCCccccCCCCCCCCC-C
Q 002446          469 NAVIQDISFSDDSNWIMISSS---------RGTSHLFAINPLGGSVNF-QPTDANFTTKHGAMAKSGVRWPPNLGLQM-P  537 (921)
Q Consensus       469 ~a~I~sIaFSPDg~~LAsgS~---------DgTVhVWdi~~~g~~~~l-~~H~~~~~~~~~~~~~~~~r~~~~s~l~~-~  537 (921)
                      ....+++...|||.+-+....         ..+=.||.+.+.+....+ ..|                 .....++.| +
T Consensus       110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~-----------------~~~~NGla~Sp  172 (307)
T COG3386         110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDD-----------------LTIPNGLAFSP  172 (307)
T ss_pred             cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCc-----------------EEecCceEECC
Confidence            556789999999998776544         223356666654333333 111                 112345666 8


Q ss_pred             CCccccc
Q 002446          538 NQQSLCA  544 (921)
Q Consensus       538 ~~~~l~~  544 (921)
                      |+++|+.
T Consensus       173 Dg~tly~  179 (307)
T COG3386         173 DGKTLYV  179 (307)
T ss_pred             CCCEEEE
Confidence            8888875

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=84.68  E-value=97  Score=37.07  Aligned_cols=58  Identities=10%  Similarity=0.105  Sum_probs=40.1

Q ss_pred             cEEEEEECCCCcEEEEEeCCCCE------E-EEEEcCCEEEEE----------eCCEEEEEECCCCcEEEEEecC
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPI------Y-SVRCSSRVVAIC----------QAAQVHCFDAATLEIEYAILTN  263 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s~V------~-sV~~S~riLAVa----------~d~~I~IwDl~T~~~l~tL~t~  263 (921)
                      +.|.-+|.+||+.+-..+....+      . +..+...++.+.          .++.|+++|+.|++.+++....
T Consensus       120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~  194 (488)
T cd00216         120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTT  194 (488)
T ss_pred             CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeecc
Confidence            56888899999999887765431      1 112223444443          2468999999999999887653

The alignment model contains an 8-bladed beta-propeller.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.57  E-value=6.2  Score=48.92  Aligned_cols=106  Identities=18%  Similarity=0.324  Sum_probs=72.6

Q ss_pred             cccccCCCCEEEEEECCCCceEEEeccCCCCeEEEEECCC-----CCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCc
Q 002446          382 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-----GILLVTASVQGHNINIFKIIPGILGTSSACDAGTS  456 (921)
Q Consensus       382 ~~~s~~~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPd-----GtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~  456 (921)
                      .++++..||+|.|-.+.+.+...++.=+ -||.+++|+||     .+.+++++..|  +-++.-.-  .+.         
T Consensus        85 y~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag--lvL~er~w--lgn---------  150 (846)
T KOG2066|consen   85 YVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNW--LGN---------  150 (846)
T ss_pred             eEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcce--EEEehhhh--hcC---------
Confidence            3456788999999998888776655543 48999999998     67889998887  44553211  010         


Q ss_pred             eeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCceee
Q 002446          457 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       457 ~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~~~l  507 (921)
                      ...+ .++.|.  ..|.+|+|-  |.++|=++++| |+|||+........+
T Consensus       151 k~~v-~l~~~e--G~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i  195 (846)
T KOG2066|consen  151 KDSV-VLSEGE--GPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI  195 (846)
T ss_pred             ccce-eeecCc--cceEEEEec--CcEEEEecCCC-cEEEeccccceeecc
Confidence            0111 232222  349999995  78999998887 889999876555444

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=83.59  E-value=8.7  Score=45.00  Aligned_cols=97  Identities=16%  Similarity=0.293  Sum_probs=59.9

Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCC----CCCC---ccCCCCc--eeEEEEEecc-------
Q 002446          403 IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL----GTSS---ACDAGTS--YVHLYRLQRG-------  466 (921)
Q Consensus       403 l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~----~~~s---~~~~~~~--~~~l~~l~RG-------  466 (921)
                      +-.|.--+...+++.|+|+|..+++-+.|- .||+|+..++--    ....   ...+...  ..++ +|.|.       
T Consensus       194 Ly~f~K~Kt~pts~Efsp~g~qistl~~Dr-kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V-elgRRmaverel  271 (558)
T KOG0882|consen  194 LYGFPKAKTEPTSFEFSPDGAQISTLNPDR-KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV-ELGRRMAVEREL  271 (558)
T ss_pred             hhcccccccCccceEEccccCcccccCccc-EEEEEEeccchhhhhhhccchhhhhcccccccccee-ehhhhhhHHhhH
Confidence            333444456778999999999999999885 599999988610    0000   0000000  0010 11111       


Q ss_pred             --cccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCC
Q 002446          467 --LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG  502 (921)
Q Consensus       467 --~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g  502 (921)
                        +...+-..++|...|++|.-++.=| |+|+.+.+..
T Consensus       272 ek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~  308 (558)
T KOG0882|consen  272 EKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT  308 (558)
T ss_pred             hhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence              1222346788999999999988766 8888887753

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=83.41  E-value=1e+02  Score=37.51  Aligned_cols=53  Identities=15%  Similarity=0.331  Sum_probs=37.4

Q ss_pred             CCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCC
Q 002446          389 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       389 ~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g  443 (921)
                      -|.+.=+|+.+++.+-.++......... +.-.|.++..++.+|. ++.||..++
T Consensus       440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~-l~a~D~~TG  492 (527)
T TIGR03075       440 MGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGY-FKAFDAKTG  492 (527)
T ss_pred             ceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCe-EEEEECCCC
Confidence            4788899999999988776433222221 1225557777888986 999999997

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=82.99  E-value=20  Score=45.05  Aligned_cols=91  Identities=13%  Similarity=0.252  Sum_probs=57.9

Q ss_pred             CCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCCCCCCcc---CCCCceeEEE---EEecccccccEEEEEEccC---C
Q 002446          411 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC---DAGTSYVHLY---RLQRGLTNAVIQDISFSDD---S  481 (921)
Q Consensus       411 ~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~~~~s~~---~~~~~~~~l~---~l~RG~t~a~I~sIaFSPD---g  481 (921)
                      ..|..|.+||+|++||-++..|  |-|-.+... .|..+..   ...-.|+...   .+.+......|..+.|.|.   +
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r-~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRR-WGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc--EEEEEeccc-cCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            4688899999999999999987  556666431 1111100   0001111110   1122223346999999987   5


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCc
Q 002446          482 NWIMISSSRGTSHLFAINPLGGS  504 (921)
Q Consensus       482 ~~LAsgS~DgTVhVWdi~~~g~~  504 (921)
                      ..|++=++|+++++||+.....+
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCCCC
Confidence            89999999999999999865444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=82.90  E-value=2.7  Score=33.87  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=26.2

Q ss_pred             CCeEEEEECCCC---CEEEEEecCCCEEEEEeCCCC
Q 002446          411 SPISALCFDPSG---ILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       411 ~pIsaLaFSPdG---tlLATaS~DGt~IrIWdi~~g  443 (921)
                      ++|.+++|||+.   .+||.+-..|. |+|+|+..+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcccC
Confidence            478999999854   59998888886 999999853

It contains a characteristic DLL sequence motif.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=82.89  E-value=36  Score=39.05  Aligned_cols=51  Identities=22%  Similarity=0.425  Sum_probs=40.3

Q ss_pred             EEEEEECCCCceEEEeccCCCCeEEEEECCCCC-EEEEEec-CCCEEEEEeCCCC
Q 002446          391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASV-QGHNINIFKIIPG  443 (921)
Q Consensus       391 ~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGt-lLATaS~-DGt~IrIWdi~~g  443 (921)
                      .|-++|+.+++.+..+.. ..+|.+|+.+.|.+ +|.+.+. +|. +.|||..++
T Consensus       270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tG  322 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATG  322 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT-
T ss_pred             EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCC
Confidence            688899999999999883 13688999999988 6655554 565 899999987

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=82.77  E-value=18  Score=41.89  Aligned_cols=95  Identities=15%  Similarity=0.225  Sum_probs=67.1

Q ss_pred             CCCEEEEEECCCCceEEEeccCCCCeEEEEECCCCCEEEEEecC--CCEEEEEeCCCCCCCCCCccCCCCceeEEEEEec
Q 002446          388 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ--GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR  465 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~D--Gt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~R  465 (921)
                      ....|.+.|..+.+.+..+.--. .-..++|+|+|+.+..+...  ...+.+.|..+.              ..+.+...
T Consensus        94 ~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--------------~~~~~~~v  158 (381)
T COG3391          94 DSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--------------KVTATIPV  158 (381)
T ss_pred             CCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC--------------eEEEEEec
Confidence            35789999988887776665222 44569999999888777762  244777777764              23334555


Q ss_pred             ccccccEEEEEEccCCCEEEEEe-CCCcEEEEecCC
Q 002446          466 GLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINP  500 (921)
Q Consensus       466 G~t~a~I~sIaFSPDg~~LAsgS-~DgTVhVWdi~~  500 (921)
                      |...   ..++++|+|+.+.+.. .++++.+++.+.
T Consensus       159 G~~P---~~~a~~p~g~~vyv~~~~~~~v~vi~~~~  191 (381)
T COG3391         159 GNTP---TGVAVDPDGNKVYVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             CCCc---ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence            6433   7899999999766554 789999999544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.17  E-value=70  Score=36.38  Aligned_cols=50  Identities=12%  Similarity=0.111  Sum_probs=39.1

Q ss_pred             cEEEEEECCCCcEEEEEeCCCCEEEEEEc--CCEEEEEeCCEEEEEECCCCc
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLE  255 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s~V~sV~~S--~riLAVa~d~~I~IwDl~T~~  255 (921)
                      +.+-+||+.+++..........+....+|  ++.||...++.|+++++.+.+
T Consensus        23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~   74 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ   74 (353)
T ss_dssp             EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred             eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCC
Confidence            67899999998765543335677788887  689999999999999998884

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=82.09  E-value=7.8  Score=44.01  Aligned_cols=113  Identities=12%  Similarity=0.198  Sum_probs=72.6

Q ss_pred             CCceEEEeccCCCCeEEEEECCCCCEEEEEecCCCEEEEEeCCCCCC--CC-------CCc---------cCCCC-----
Q 002446          399 SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL--GT-------SSA---------CDAGT-----  455 (921)
Q Consensus       399 s~~~l~~~~aH~~pIsaLaFSPdGtlLATaS~DGt~IrIWdi~~g~~--~~-------~s~---------~~~~~-----  455 (921)
                      ....+....+|..+|..+-|+-.-+++++++.|..  -.|-......  |.       +..         ++-..     
T Consensus       103 km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~--~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~l  180 (404)
T KOG1409|consen  103 KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ--FAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITML  180 (404)
T ss_pred             hcchhhhhhhhhcceeeEEecCCceeEEEeccccc--eEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEE
Confidence            33455566688888888888888888888888753  2443322100  00       000         00000     


Q ss_pred             -----ceeEEEEEecccccccEEEEEEccCCCEEEEEeCCCcEEEEecCCCCCc-eeecCCCCCcc
Q 002446          456 -----SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS-VNFQPTDANFT  515 (921)
Q Consensus       456 -----~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~~~g~~-~~l~~H~~~~~  515 (921)
                           .+..++++ +|++. .|++++|.|-.+.|.++..|..+.+|||--..+. ..+++|.+.+.
T Consensus       181 r~~~~~~~~i~~~-~~h~~-~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~  244 (404)
T KOG1409|consen  181 KLEQNGCQLITTF-NGHTG-EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ  244 (404)
T ss_pred             EEeecCCceEEEE-cCccc-ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence                 11223343 56554 4999999999999999999999999999765554 46788876655

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.00  E-value=1.8  Score=54.96  Aligned_cols=74  Identities=11%  Similarity=0.211  Sum_probs=54.6

Q ss_pred             CCCEEEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEEEEeccc-ccccEEEEEEccCCCEEEEEeCCCcEEEEecC
Q 002446          421 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       421 dGtlLATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~-t~a~I~sIaFSPDg~~LAsgS~DgTVhVWdi~  499 (921)
                      -+..+|.++..|+ +-.+|....                +.-+++|. ....|.++||+.||++++.|-.+|-|.+||++
T Consensus        98 ~~~~ivi~Ts~gh-vl~~d~~~n----------------L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~  160 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGH-VLLSDMTGN----------------LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH  160 (1206)
T ss_pred             eeeeEEEEcCchh-hhhhhhhcc----------------cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc
Confidence            5667888888887 677776542                11122221 23459999999999999999999999999999


Q ss_pred             CCCCceeecCCC
Q 002446          500 PLGGSVNFQPTD  511 (921)
Q Consensus       500 ~~g~~~~l~~H~  511 (921)
                      .......+.-|+
T Consensus       161 ~~k~l~~i~e~~  172 (1206)
T KOG2079|consen  161 RAKILKVITEHG  172 (1206)
T ss_pred             CCcceeeeeecC
Confidence            877766665543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=81.19  E-value=13  Score=43.93  Aligned_cols=109  Identities=14%  Similarity=0.134  Sum_probs=55.3

Q ss_pred             CCCCEEEEEECCCCceEEEecc-CCC-CeEEEEECCC--CCE-EEEEecCCCEEEEEeCCCCCCCCCCccCCCCceeEEE
Q 002446          387 DNVGMVIVRDIVSKNVIAQFRA-HKS-PISALCFDPS--GIL-LVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY  461 (921)
Q Consensus       387 ~~~G~V~IwDl~s~~~l~~~~a-H~~-pIsaLaFSPd--Gtl-LATaS~DGt~IrIWdi~~g~~~~~s~~~~~~~~~~l~  461 (921)
                      ..-..+.+||+.+.+.++++.- -.+ -...|.|-.+  -.+ ++.|.-.+++.++|....+ .       |  ..+.+.
T Consensus       219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g-~-------W--~a~kVi  288 (461)
T PF05694_consen  219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG-E-------W--AAEKVI  288 (461)
T ss_dssp             -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT-E-------E--EEEEEE
T ss_pred             cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC-C-------e--eeeEEE
Confidence            3456899999999999998873 222 3456777554  444 4444444444455543332 1       1  112222


Q ss_pred             EEec---------------ccccccEEEEEEccCCCEEEEEe-CCCcEEEEecCCCCCce
Q 002446          462 RLQR---------------GLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSV  505 (921)
Q Consensus       462 ~l~R---------------G~t~a~I~sIaFSPDg~~LAsgS-~DgTVhVWdi~~~g~~~  505 (921)
                      ++.-               +...+-|++|..|.|.+||-.+. .+|.|+.|||+....+.
T Consensus       289 ~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk  348 (461)
T PF05694_consen  289 DIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK  348 (461)
T ss_dssp             EE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred             ECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence            2210               11123489999999999997665 69999999999875543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=81.01  E-value=1.4e+02  Score=36.29  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=37.1

Q ss_pred             cEEEEEECCCCcEEEEEeCCCC--EEEEE-----EcCCEEEEEe------CCEEEEEECCCCcEEEEEecCC
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSP--IYSVR-----CSSRVVAICQ------AAQVHCFDAATLEIEYAILTNP  264 (921)
Q Consensus       206 ~tVrIWDL~Tg~~V~tL~f~s~--V~sV~-----~S~riLAVa~------d~~I~IwDl~T~~~l~tL~t~p  264 (921)
                      +.|.-.|.+||+.+-.......  -+.+.     ...++++...      ++.|+.||+.|++.+++..+-+
T Consensus       130 g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p  201 (527)
T TIGR03075       130 ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVP  201 (527)
T ss_pred             CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcC
Confidence            4567778999988876654210  01111     1233333332      5799999999999998877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.28  E-value=9.9  Score=43.83  Aligned_cols=76  Identities=18%  Similarity=0.300  Sum_probs=48.2

Q ss_pred             CeEEEEECCCCCEEEEE-ecCC---CEEEEEeCCCCCCCCCCccCCCCceeEEEEEecccccccEEEEEEccCCCEEEEE
Q 002446          412 PISALCFDPSGILLVTA-SVQG---HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS  487 (921)
Q Consensus       412 pIsaLaFSPdGtlLATa-S~DG---t~IrIWdi~~g~~~~~s~~~~~~~~~~l~~l~RG~t~a~I~sIaFSPDg~~LAsg  487 (921)
                      .+...++||||++||-+ +..|   ..++|+|+.++              ..+-.   +.....-..++|++|++.|.-.
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--------------~~l~d---~i~~~~~~~~~W~~d~~~~~y~  187 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--------------KFLPD---GIENPKFSSVSWSDDGKGFFYT  187 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--------------EEEEE---EEEEEESEEEEECTTSSEEEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--------------cCcCC---cccccccceEEEeCCCCEEEEE
Confidence            44568999999998866 4444   35999999986              22221   1111222349999999987766


Q ss_pred             eCCCc-----------EEEEecCCCCCc
Q 002446          488 SSRGT-----------SHLFAINPLGGS  504 (921)
Q Consensus       488 S~DgT-----------VhVWdi~~~g~~  504 (921)
                      ..+..           |+.|++.+....
T Consensus       188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~  215 (414)
T PF02897_consen  188 RFDEDQRTSDSGYPRQVYRHKLGTPQSE  215 (414)
T ss_dssp             ECSTTTSS-CCGCCEEEEEEETTS-GGG
T ss_pred             EeCcccccccCCCCcEEEEEECCCChHh
Confidence            65442           667777655443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	921
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	6e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 94.7 bits (235), Expect = 6e-21
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 14/122 (11%)

Query: 379 VNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 438
                  +       V+           +AH +PI  +  +    ++ T S  G  I +F
Sbjct: 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223

Query: 439 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 498
           K   G              V +   +RGL  A + D+ +S D + + + S + T H+F I
Sbjct: 224 KTEDG--------------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI 269

Query: 499 NP 500
             
Sbjct: 270 FN 271

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.9 bits (170), Expect = 3e-12
 Identities = 123/770 (15%), Positives = 223/770 (28%), Gaps = 251/770 (32%)

Query: 127 DNVHDLVSRYDGPVSFMQMLPRPITSKR-------SRDKFAEVRPLL-VFCADGSRSCGT 178
                 V  +D     +Q +P+ I SK        S+D  +    L     +        
Sbjct: 24  VFEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 179 KVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVV 238
            V++ L        +         S+ T + +   R + Y     F    Y+V   SR+ 
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRM-YIEQRDRLYNDNQVFAK--YNV---SRLQ 135

Query: 239 AICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVV 298
              +  Q      A LE+               A  + I  G L  G  W+A     + V
Sbjct: 136 PYLKLRQ------ALLELR-------------PAKNVLI-DGVLGSGKTWVA-----LDV 170

Query: 299 SNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 358
               +V  Q  M    F  F  N   + +     +      +  L  L Y+    + S  
Sbjct: 171 CLSYKV--QCKM---DFKIFWLN---LKNCNSPETV-----LEMLQKLLYQIDPNWTSRS 217

Query: 359 -----LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPI 413
                +    +S+Q+ +         +  + +     ++++ ++ +      F       
Sbjct: 218 DHSSNIKLRIHSIQAEL----RRLLKSKPYENC----LLVLLNVQNAKAWNAFNLS---- 265

Query: 414 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ 473
              C     ILL T         +   +           A T+++ L      LT   ++
Sbjct: 266 ---C----KILLTTR-----FKQVTDFLSA---------ATTTHISLDHHSMTLTPDEVK 304

Query: 474 DISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLG 533
            +       ++                                                 
Sbjct: 305 SL-LL---KYLDCRPQ-------------------------------------------- 316

Query: 534 LQMPNQQSLCASGPPVTLSVVS-RIRNGNNGWRGTVSGAAAAATGRVSSLSGAIASSFHN 592
             +P +  +  +  P  LS+++  IR+G   W                 L+  I SS + 
Sbjct: 317 -DLPRE--VL-TTNPRRLSIIAESIRDGLATWDNW-------KHVNCDKLTTIIESSLNV 365

Query: 593 CKGN--SETYAAGSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPE 650
            +     + +           L VF PS               +   +  L   +  V +
Sbjct: 366 LEPAEYRKMFDR---------LSVFPPS-------------AHIPTIL--LSLIWFDVIK 401

Query: 651 DDPRLVVEAIQKWNICQKQA--------------RREREDN-------IDIYGDNGTLDS 689
            D  +VV  + K+++ +KQ               + + E+        +D Y    T DS
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 690 NKIYPEEVKDGNFASTEANGVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQ 749
           + + P  + D  F S                 HHL   E     HP R+ L+    ++  
Sbjct: 462 DDLIPPYL-DQYFYSHIG--------------HHLKNIE-----HPERMTLF--RMVFL- 498

Query: 750 SMMIKDFKMGEENFLKGEIEIERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNS 809
                DF      FL+ +I   R  +    A       + + LQ  KF +  +       
Sbjct: 499 -----DF-----RFLEQKI---RHDSTAWNASG----SILNTLQQLKFYKPYI-CDNDPK 540

Query: 810 NER----LLHQRSGLSENGLLSRRSSSGSLDSVTVNGALAAEPNIGIEET 855
            ER    +L     + EN + S+       D + +  AL AE     EE 
Sbjct: 541 YERLVNAILDFLPKIEENLICSK-----YTDLLRI--ALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 4e-05
 Identities = 50/329 (15%), Positives = 96/329 (29%), Gaps = 90/329 (27%)

Query: 593 CKGNSETYAA--GSSLKIKNHLLVFSPSGCMIQYALRISTGLDVTMGVPGLGSAYDSVPE 650
                E         L+  N+  + SP    I+   R    +   M +      Y+    
Sbjct: 72  LSKQEEMVQKFVEEVLR-INYKFLMSP----IKTEQR-QPSMMTRMYIEQRDRLYNDNQV 125

Query: 651 DDPRLV--VEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEAN 708
                V  ++   K      + R  +  N+ I G  G   S K            +  A 
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAK--NVLIDGVLG---SGK------------TWVAL 168

Query: 709 GVIEKTKVSPEDKHHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENFLKGEI 768
            V    KV                    +I  W                +   N  +  +
Sbjct: 169 DVCLSYKV--------------QCKMDFKI-FWL--------------NLKNCNSPETVL 199

Query: 769 EI-ERFPTRMIEARSKDLVPVFDYLQSPKFSQARVPTVGRNSNERLLHQRSGLSENGLLS 827
           E+ ++   ++      +     D+  + K     +    +    RLL  +    EN LL 
Sbjct: 200 EMLQKLLYQI----DPNWTSRSDHSSNIKLRIHSI----QAELRRLLKSKPY--ENCLL- 248

Query: 828 RRSSSGSLDSVTVNGALAAEPNIGIEETSLDCPQMPVDTKGF-VNNSVSPKTKTRHEIVN 886
                  L +V                 +L C ++ + T+   V + +S  T T   + +
Sbjct: 249 ------VLLNV-------QNAKA-WNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 887 NSESLRVEAQ-----LKFVNSKIEGLRME 910
           +S +L    +     LK+++ + + L  E
Sbjct: 294 HSMTL-TPDEVKSLLLKYLDCRPQDLPRE 321

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	921
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.004
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 15/106 (14%)

Query: 391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA 450
              + D+        F  H+S I+A+CF P+G    T S                     
Sbjct: 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA--------- 257

Query: 451 CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 496
                    L           I  +SFS     ++        +++
Sbjct: 258 ------DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 4e-04
 Identities = 8/40 (20%), Positives = 14/40 (35%)

Query: 390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS 429
               V D +  +       H + +S L     G+ + T S
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 4e-05
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 356 SEFLPDSQNSLQSAIPGGKSNGTVNGHF-PDADNV-----GMVIVRDIVSKNVIAQFRAH 409
           SEF   SQ +L  ++P       V     P  D +       V    + S      +  H
Sbjct: 1   SEF---SQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEH 57

Query: 410 KSPISALCFDPSGILLVTASVQGH 433
               +     PSG    +  V G+
Sbjct: 58  SHQTTVAKTSPSGYYCASGDVHGN 81

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (96), Expect = 3e-04
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 439
             + V D  +K  +    AH+  +++L F  +   +VT SV    + +++
Sbjct: 269 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 15/147 (10%), Positives = 44/147 (29%), Gaps = 19/147 (12%)

Query: 352 SQYCSEFLPDSQNSLQSAIPGGKS--NGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH 409
              C  + P+S  S  S   G ++  +G              + + D+ +   +     H
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 410 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 469
            + +  + F   G  +++ +     + ++                       +      +
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNK---------------RCMKTLNAHEH 290

Query: 470 AVIQDISFSDDSNWIMISSSRGTSHLF 496
            V   + F   + +++  S   T  ++
Sbjct: 291 FVT-SLDFHKTAPYVVTGSVDQTVKVW 316

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 15/123 (12%), Positives = 32/123 (26%), Gaps = 4/123 (3%)

Query: 376 NGTVNGHFPDADNVGMVIVRDIVSKNVIA----QFRAHKSPISALCFDPSGILLVTASVQ 431
           +                I+ +      I     +   H S +  + F   G  L T   +
Sbjct: 24  DSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK 83

Query: 432 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 491
              +        +   S    A     +L       ++  I+ + FS D  ++   +   
Sbjct: 84  TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 143

Query: 492 TSH 494
              
Sbjct: 144 LIR 146

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 10/91 (10%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 406 FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 465
              HK  + ++ F   G  +V+ S+          +  +   ++  D+ T       +  
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSV-----KLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 466 GLTNAVIQDISFSDDSNWIMISSSRGTSHLF 496
                 +  ++ + +  +I+  S       +
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 15/93 (16%)

Query: 404 AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 463
           A       PIS   ++     +       H ++I++             +G  +V ++ L
Sbjct: 1   AYHSFLVEPISCHAWNKDRTQIAICP-NNHEVHIYEK------------SGNKWVQVHEL 47

Query: 464 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 496
           +      V   + ++ DSN I+   +   ++++
Sbjct: 48  K-EHNGQV-TGVDWAPDSNRIVTCGTDRNAYVW 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	921
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.92
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.92
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.91
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.91
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.91
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.9
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.87
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.85
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.81
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.8
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.74
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.74
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.7
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.68
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.65
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.64
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.63
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.56
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.51
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.45
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.44
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.26
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.13
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.05
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.02
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.99
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.83
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.82
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.81
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.77
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.96
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.56
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.44
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.21
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.19
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.06
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.04
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.95
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.93
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.83
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.7
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	95.51
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.09
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	94.98
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	94.31
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.22
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	92.91
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.04
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.62
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	87.36
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	84.22
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	80.21

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=5.5e-28  Score=177.11  Aligned_cols=252  Identities=10%  Similarity=0.120  Sum_probs=181.7

Q ss_pred             CCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEE
Q ss_conf             99858999982035777878859999816958999715899817833430478899999208987745457434678889
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLL  166 (921)
Q Consensus        87 ~kd~V~w~~Fd~l~~d~~~~~~vLllG~~~GfqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~rPLL  166 (921)
                      ++.+..-+.++.   ++    ..|+.+..+.+.+||+++ .+...++..|.++|.++++.|+              ..+|
T Consensus        16 ~r~~~~~~a~~~---~g----~~l~~~~~~~v~i~~~~~-~~~~~~~~~H~~~v~~~~~sp~--------------g~~l   73 (311)
T d1nr0a1          16 ARGTAVVLGNTP---AG----DKIQYCNGTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSPS--------------GYYC   73 (311)
T ss_dssp             CTTCCCCCEECT---TS----SEEEEEETTEEEEEETTC-SSCCEEECCCSSCEEEEEECTT--------------SSEE
T ss_pred             CCCCEEEEEECC---CC----CEEEEEECCEEEEEECCC-CCEEEEECCCCCCEEEEEEECC--------------CCEE
T ss_conf             788759999969---98----999999699999999999-9661797478888899999489--------------9967


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE--EEEE-CCCCEEEEEEC--CCEEEEE
Q ss_conf             99928988677544578543348998876788999878969999978999199--9993-89978999973--9899999
Q 002446          167 VFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYV--HMLK-FRSPIYSVRCS--SRVVAIC  241 (921)
Q Consensus       167 avv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V--~tL~-f~S~V~sI~~S--~riLAVa  241 (921)
                      |.++.          |                       ++|++||+.+++.+  ..++ +..+|.+|+++  +++++++
T Consensus        74 atg~~----------d-----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~  120 (311)
T d1nr0a1          74 ASGDV----------H-----------------------GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV  120 (311)
T ss_dssp             EEEET----------T-----------------------SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred             ECCCC----------C-----------------------CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             22556----------7-----------------------36746631011110000134335754332333111000111


Q ss_pred             E---CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             1---9989999889994779996188755889999877445621344724896189840038986588655445455665
Q 002446          242 Q---AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF  318 (921)
Q Consensus       242 ~---~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~  318 (921)
                      .   +..+.+||..+.+...++..+..               ++    +.++|..             .           
T Consensus       121 ~~~~~~~~~v~~~~~~~~~~~l~~h~~---------------~v----~~v~~~~-------------~-----------  157 (311)
T d1nr0a1         121 GEGRERFGHVFLFDTGTSNGNLTGQAR---------------AM----NSVDFKP-------------S-----------  157 (311)
T ss_dssp             ECCSSCSEEEEETTTCCBCBCCCCCSS---------------CE----EEEEECS-------------S-----------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC---------------CC----CCCCCCC-------------C-----------
T ss_conf             122111111111111111111111111---------------11----1111121-------------1-----------


Q ss_pred             CCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             68996300011000000101157517765421233323456898677443358998899546766566888779999899
Q 002446          319 ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV  398 (921)
Q Consensus       319 ~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~  398 (921)
                         +..                                                         .++.+..+|.|++||+.
T Consensus       158 ---~~~---------------------------------------------------------~l~sgs~d~~i~i~d~~  177 (311)
T d1nr0a1         158 ---RPF---------------------------------------------------------RIISGSDDNTVAIFEGP  177 (311)
T ss_dssp             ---SSC---------------------------------------------------------EEEEEETTSCEEEEETT
T ss_pred             ---CEE---------------------------------------------------------EECCCCCCCCCCCCCCC
T ss_conf             ---101---------------------------------------------------------20001122111111111


Q ss_pred             CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEC------CCCCCCE
Q ss_conf             9816889314898858999889999999996699789999589899888876678873159999741------6664328
Q 002446          399 SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR------GLTNAVI  472 (921)
Q Consensus       399 s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~R------G~t~a~I  472 (921)
                      +.+.+..+..|..+|.+++|+|+|.+|++++.||. |++|+...+              ..+..+..      |+ ...|
T Consensus       178 ~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~-v~~~d~~~~--------------~~~~~~~~~~~~~~~h-~~~V  241 (311)
T d1nr0a1         178 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDG--------------TKTGVFEDDSLKNVAH-SGSV  241 (311)
T ss_dssp             TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTC--------------CEEEECBCTTSSSCSS-SSCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC--------------CCCCCCCCCCCCCCCC-CCCC
T ss_conf             11111111111111111234764221211111111-100012446--------------4112221111111002-4653


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEECCCCC
Q ss_conf             9999956999999994999199984689998402237888
Q 002446          473 QDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA  512 (921)
Q Consensus       473 ~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l~~H~~  512 (921)
                      .+++|+||+++|++++.||+++||++.+......+..|..
T Consensus       242 ~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~  281 (311)
T d1nr0a1         242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR  281 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
T ss_conf             2102478899999993799699999999969999979998

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.8e-27  Score=170.08  Aligned_cols=291  Identities=13%  Similarity=0.192  Sum_probs=182.1

Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             9999985899998203577787885999981-695899971589981783343047889999920898774545743467
Q 002446           84 DESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        84 ~~~~kd~V~w~~Fd~l~~d~~~~~~vLllG~-~~GfqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~  162 (921)
                      ..+|++.|..+.|..   ++    .+|+.|. ++-++|||+++ ++....+..|.++|.++.+.|..             
T Consensus        13 L~GH~~~I~~l~~sp---~~----~~l~s~s~Dg~i~iWd~~~-~~~~~~~~~h~~~V~~~~~~~~~-------------   71 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHP---VF----SVMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSG-------------   71 (317)
T ss_dssp             EECCSSCEEEEEECS---SS----SEEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTS-------------
T ss_pred             ECCCCCCEEEEEECC---CC----CEEEEEECCCEEEEEECCC-CCEEEEEECCCCCEEEEEEECCC-------------
T ss_conf             858888768999938---98----9999993899299998999-97999995788867777630111-------------


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCC-CCCCCCCC-----CCCCCCC---CCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEE
Q ss_conf             88899992898867754457854-33489988-----7678899---987896999997899919999938-99789999
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLA-TACNGTSA-----NYHDLGN---GSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVR  232 (921)
Q Consensus       163 rPLLavv~~g~~~g~~~~~Dg~~-~~~~g~~~-----~~h~~~~---~~~~~~tVriWDLkTg~~V~tL~f-~S~V~sI~  232 (921)
                       .+++.+................ ..+.+...     ..+..++   .......+++||+++++.+..+.. ...+..+.
T Consensus        72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (317)
T d1vyhc1          72 -KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR  150 (317)
T ss_dssp             -SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEE
T ss_conf             -1011111111101110011111111000000000000169985577652675235751144303468716777630000


Q ss_pred             EC--CCEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCCCCCC
Q ss_conf             73--989999-919989999889994779996188755889999877445621344724896189840038986588655
Q 002446          233 CS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHL  309 (921)
Q Consensus       233 ~S--~riLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l  309 (921)
                      ++  .++|++ ..++.|++|++.+.+....+..+...               +    ..+++........         .
T Consensus       151 ~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~---------------i----~~~~~~~~~~~~~---------~  202 (317)
T d1vyhc1         151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV---------------V----ECISWAPESSYSS---------I  202 (317)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC---------------E----EEEEECCSCGGGG---------G
T ss_pred             CCCCCCEEEEEECCCEEEEEEECCCEEEEEEECCCCC---------------C----EEEEEEECCCCCE---------E
T ss_conf             1667999999927982999751254034788247787---------------3----3799863256411---------1


Q ss_pred             CCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44545566568996300011000000101157517765421233323456898677443358998899546766566888
Q 002446          310 MQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNV  389 (921)
Q Consensus       310 ~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~  389 (921)
                      ..        ..+.                                        .......+        ...+..+..+
T Consensus       203 ~~--------~~~~----------------------------------------~~~~~~~~--------~~~~~~~~~d  226 (317)
T d1vyhc1         203 SE--------ATGS----------------------------------------ETKKSGKP--------GPFLLSGSRD  226 (317)
T ss_dssp             GG--------CCSC----------------------------------------C---------------CCEEEEEETT
T ss_pred             EC--------CCCC----------------------------------------EEEEECCC--------CCEEEECCCC
T ss_conf             03--------4563----------------------------------------03430258--------8614751699


Q ss_pred             CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf             77999989998168893148988589998899999999966997899995898998888766788731599997416664
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN  469 (921)
Q Consensus       390 G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~  469 (921)
                      |.|++||+.+++++..+.+|..+|.+++|+|+|.+|++++.||+ |+|||+.++              ..+..+. ++. 
T Consensus       227 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~--------------~~~~~~~-~h~-  289 (317)
T d1vyhc1         227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNK--------------RCMKTLN-AHE-  289 (317)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTS--------------CCCEEEE-CCS-
T ss_pred             CEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCE-EEEEECCCC--------------CEEEEEC-CCC-
T ss_conf             78999888999688999688998799998799999999979894-999999999--------------1999992-899-


Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             3289999956999999994999199984
Q 002446          470 AVIQDISFSDDSNWIMISSSRGTSHLFA  497 (921)
Q Consensus       470 a~I~sIaFSpDs~~LAsgS~DGTVhIwd  497 (921)
                      ..|.+++|+||+++|++++.||+|+||+
T Consensus       290 ~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         290 HFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf             9889999949999999992899499829

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.2e-27  Score=170.25  Aligned_cols=275  Identities=14%  Similarity=0.210  Sum_probs=179.9

Q ss_pred             CCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEE----EEEECCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             99985899998203577787885999981695899971589981783----34304788999992089877454574346
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDL----VSRYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        86 ~~kd~V~w~~Fd~l~~d~~~~~~vLllG~~~GfqVWDi~~~g~~~ei----vS~~dGpVr~i~ilP~P~~~~~~~d~F~~  161 (921)
                      .|.+.|..+.|..   ++    +.|+.|.++.++|||++.......+    ...|+++|.++++.|+             
T Consensus        49 ~H~~~V~~v~fs~---~g----~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d-------------  108 (337)
T d1gxra_          49 NHGEVVCAVTISN---PT----RHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD-------------  108 (337)
T ss_dssp             CCSSCCCEEEECS---SS----SEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT-------------
T ss_pred             CCCCCEEEEEECC---CC----CEEEEEECCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCC-------------
T ss_conf             9999289999989---99----999999799889977367763311687640488996899998679-------------


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC--CEEEEEEC-CCCEEEEEEC--CC
Q ss_conf             7888999928988677544578543348998876788999878969999978999--19999938-9978999973--98
Q 002446          162 VRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ--SYVHMLKF-RSPIYSVRCS--SR  236 (921)
Q Consensus       162 ~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg--~~V~tL~f-~S~V~sI~~S--~r  236 (921)
                       ..+|+.++.          |                       ++|++||+...  +....+.. ...|..+.++  ..
T Consensus       109 -g~~l~s~~~----------d-----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  154 (337)
T d1gxra_         109 -GCTLIVGGE----------A-----------------------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK  154 (337)
T ss_dssp             -SSEEEEEES----------S-----------------------SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS
T ss_pred             -CCEEEEEEC----------C-----------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -988988612----------3-----------------------321111111111111111111111111111111111


Q ss_pred             EEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECC--CEEEECCCCCEECCCCCCCCCCCCCCC
Q ss_conf             9999-9199899998899947799961887558899998774456213447--248961898400389865886554454
Q 002446          237 VVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSR  313 (921)
Q Consensus       237 iLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgp--RwLAyas~~~~~s~~GrvsPq~l~~s~  313 (921)
                      ++++ +.+..|.+||+.+.++......+...            ...+++++  ..+++++.+-                 
T Consensus       155 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~------------v~~l~~s~~~~~~~~~~~d~-----------------  205 (337)
T d1gxra_         155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG------------ASCIDISNDGTKLWTGGLDN-----------------  205 (337)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSC------------EEEEEECTTSSEEEEEETTS-----------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCC-----------------
T ss_conf             1111111111111111111111111111111------------11012344432112235665-----------------


Q ss_pred             CCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             55665689963000110000001011575177654212333234568986774433589988995467665668887799
Q 002446          314 SFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVI  393 (921)
Q Consensus       314 ~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~  393 (921)
                                .+.-+.....+.+    ..+...  ..+.  .-...|++                  ..++.+..+|.++
T Consensus       206 ----------~v~i~d~~~~~~~----~~~~~~--~~i~--~l~~~~~~------------------~~l~~~~~d~~i~  249 (337)
T d1gxra_         206 ----------TVRSWDLREGRQL----QQHDFT--SQIF--SLGYCPTG------------------EWLAVGMESSNVE  249 (337)
T ss_dssp             ----------EEEEEETTTTEEE----EEEECS--SCEE--EEEECTTS------------------SEEEEEETTSCEE
T ss_pred             ----------CCCCCCCCCCEEE----CCCCCC--CCEE--EEEECCCC------------------CCCCEECCCCCCC
T ss_conf             ----------5321111110000----024666--6157--99971530------------------3000000256421


Q ss_pred             EEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEE
Q ss_conf             99899981688931489885899988999999999669978999958989988887667887315999974166643289
Q 002446          394 VRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ  473 (921)
Q Consensus       394 IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~  473 (921)
                      +||+.+.... ....|..+|++++|+|+|++|++++.||+ |++||+..+              ..+..+.  + ...|.
T Consensus       250 i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~~~--------------~~~~~~~--~-~~~v~  310 (337)
T d1gxra_         250 VLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYG--------------ASIFQSK--E-SSSVL  310 (337)
T ss_dssp             EEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTC--------------CEEEEEE--C-SSCEE
T ss_pred             CCCCCCCCCC-CCCCCCCCCCEEEECCCCCEEEEEECCCE-EEEEECCCC--------------CEEEECC--C-CCCEE
T ss_conf             1111111100-00124565416999899999999948996-999989999--------------7999926--9-99879


Q ss_pred             EEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             9999569999999949991999846
Q 002446          474 DISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       474 sIaFSpDs~~LAsgS~DGTVhIwdi  498 (921)
                      +++|+||+++|++++.||+|+||+|
T Consensus       311 ~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         311 SCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEECCCCEEEEEECCCEEEEEEE
T ss_conf             9999279999999908996999977

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.7e-26  Score=165.83  Aligned_cols=266  Identities=15%  Similarity=0.185  Sum_probs=169.7

Q ss_pred             CCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEEE------------------EECCCEEEEEEEC
Q ss_conf             9998589999820357778788599998169589997158998178334------------------3047889999920
Q 002446           86 SSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVS------------------RYDGPVSFMQMLP  147 (921)
Q Consensus        86 ~~kd~V~w~~Fd~l~~d~~~~~~vLllG~~~GfqVWDi~~~g~~~eivS------------------~~dGpVr~i~ilP  147 (921)
                      +|++.|..++|..   ++    ++|+.|.++.++|||+.+. .....+.                  .++..|+++.+.|
T Consensus        60 ~H~~~V~~l~fs~---dg----~~lasg~d~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  131 (388)
T d1erja_          60 DHTSVVCCVKFSN---DG----EYLATGCNKTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP  131 (388)
T ss_dssp             ECSSCCCEEEECT---TS----SEEEEECBSCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECT
T ss_pred             CCCCCEEEEEECC---CC----CEEEEEECCEEEEEEECCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf             9999689999999---99----9999994994899981364-05766316654432443211101467789889999889


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CC
Q ss_conf             89877454574346788899992898867754457854334899887678899987896999997899919999938-99
Q 002446          148 RPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RS  226 (921)
Q Consensus       148 ~P~~~~~~~d~F~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f-~S  226 (921)
                      +              ..+|+.++.          |                       ++|++||..+++.+..+.. ..
T Consensus       132 ~--------------~~~l~s~~~----------d-----------------------g~v~i~~~~~~~~~~~~~~h~~  164 (388)
T d1erja_         132 D--------------GKFLATGAE----------D-----------------------RLIRIWDIENRKIVMILQGHEQ  164 (388)
T ss_dssp             T--------------SSEEEEEET----------T-----------------------SCEEEEETTTTEEEEEECCCSS
T ss_pred             C--------------CCCCEECCC----------C-----------------------CCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9--------------980121344----------4-----------------------1111211111111111111111


Q ss_pred             CEEEEEEC--CCEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCC
Q ss_conf             78999973--989999-919989999889994779996188755889999877445621344724896189840038986
Q 002446          227 PIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGR  303 (921)
Q Consensus       227 ~V~sI~~S--~riLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~Gr  303 (921)
                      .|..+.++  ...+++ +.++.|++||..+............               ...     +++...         
T Consensus       165 ~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---------------~~~-----~~~~~~---------  215 (388)
T d1erja_         165 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---------------VTT-----VAVSPG---------  215 (388)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---------------EEE-----EEECST---------
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC---------------CCC-----CCCCCC---------
T ss_conf             111101111111111222101565410111111000012454---------------421-----123688---------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             58865544545566568996300011000000101157517765421233323456898677443358998899546766
Q 002446          304 VNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHF  383 (921)
Q Consensus       304 vsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~  383 (921)
                                       .+.                                                          .+
T Consensus       216 -----------------~~~----------------------------------------------------------~l  220 (388)
T d1erja_         216 -----------------DGK----------------------------------------------------------YI  220 (388)
T ss_dssp             -----------------TCC----------------------------------------------------------EE
T ss_pred             -----------------CCC----------------------------------------------------------EE
T ss_conf             -----------------787----------------------------------------------------------58


Q ss_pred             CCCCCCCEEEEEECCCCCEEEEE-------CCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             56688877999989998168893-------14898858999889999999996699789999589899888876678873
Q 002446          384 PDADNVGMVIVRDIVSKNVIAQF-------RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS  456 (921)
Q Consensus       384 ~~~~~~G~V~IwDl~s~~~ia~l-------~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~  456 (921)
                      +.+..+|.|.+||..++..+..+       .+|..+|.+++|+|+|++|++++.||+ |++||+............  ..
T Consensus       221 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~--~~  297 (388)
T d1erja_         221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKSDSKTP--NS  297 (388)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC----------------
T ss_pred             EEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-EEEEECCCCCCCCCCCCC--CC
T ss_conf             997389819996345573000102443334577898789999799999999978992-898751577643210134--44


Q ss_pred             EEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCCC
Q ss_conf             15999974166643289999956999999994999199984689998402237888766
Q 002446          457 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       457 ~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l~~H~~~~~  515 (921)
                      ....... .. +...|.+++|+||+++|++++.||+|+||++.+......+++|.+.+.
T Consensus       298 ~~~~~~~-~~-~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~  354 (388)
T d1erja_         298 GTCEVTY-IG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI  354 (388)
T ss_dssp             -CEEEEE-EC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CCEEEEC-CC-CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE
T ss_conf             2001101-24-553278999889999999996989799999999969999968899789

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=2.8e-26  Score=167.14  Aligned_cols=242  Identities=15%  Similarity=0.222  Sum_probs=173.3

Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCCE-EEEEEEECCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             999985899998203577787885999981-695899971589981-783343047889999920898774545743467
Q 002446           85 ESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNV-HDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        85 ~~~kd~V~w~~Fd~l~~d~~~~~~vLllG~-~~GfqVWDi~~~g~~-~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~  162 (921)
                      .+|++.|..+.|..   ++    +.|+.|. ++.++|||+...... ...+..|.++|.++.+.|+              
T Consensus        55 ~~H~~~v~~~~~sp---~g----~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d--------------  113 (311)
T d1nr0a1          55 TEHSHQTTVAKTSP---SG----YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE--------------  113 (311)
T ss_dssp             CCCSSCEEEEEECT---TS----SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT--------------
T ss_pred             CCCCCCEEEEEEEC---CC----CEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--------------
T ss_conf             47888889999948---99----9672255673674663101111000013433575433233311--------------


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEEEC--CC-EE
Q ss_conf             88899992898867754457854334899887678899987896999997899919999938-9978999973--98-99
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SR-VV  238 (921)
Q Consensus       163 rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f-~S~V~sI~~S--~r-iL  238 (921)
                      ..+|++++++.                               ...+++|++++++.+.++.. ...|..|.|+  ++ ++
T Consensus       114 ~~~l~~~~~~~-------------------------------~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l  162 (311)
T d1nr0a1         114 SKRIAAVGEGR-------------------------------ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI  162 (311)
T ss_dssp             SCEEEEEECCS-------------------------------SCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred             CCCCCCCCCCC-------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             10001111221-------------------------------11111111111111111111111111111121110120


Q ss_pred             EE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf             99-91998999988999477999618875588999987744562134472489618984003898658865544545566
Q 002446          239 AI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSG  317 (921)
Q Consensus       239 AV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~  317 (921)
                      +. +.++.|++||+.+.+....+..+..               ++    .-+++.             |.          
T Consensus       163 ~sgs~d~~i~i~d~~~~~~~~~~~~~~~---------------~i----~~v~~~-------------p~----------  200 (311)
T d1nr0a1         163 ISGSDDNTVAIFEGPPFKFKSTFGEHTK---------------FV----HSVRYN-------------PD----------  200 (311)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSS---------------CE----EEEEEC-------------TT----------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC---------------CC----CCCCCC-------------CC----------
T ss_conf             0011221111111111111111111111---------------11----112347-------------64----------


Q ss_pred             CCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             56899630001100000010115751776542123332345689867744335899889954676656688877999989
Q 002446          318 FASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDI  397 (921)
Q Consensus       318 ~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl  397 (921)
                          +.                                                          .++.+..+|.|++||.
T Consensus       201 ----~~----------------------------------------------------------~l~~~~~d~~v~~~d~  218 (311)
T d1nr0a1         201 ----GS----------------------------------------------------------LFASTGGDGTIVLYNG  218 (311)
T ss_dssp             ----SS----------------------------------------------------------EEEEEETTSCEEEEET
T ss_pred             ----CC----------------------------------------------------------CCCCCCCCCCCCCCCC
T ss_conf             ----22----------------------------------------------------------1211111111100012


Q ss_pred             CCCCEEEEEC-------CCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCC-
Q ss_conf             9981688931-------48988589998899999999966997899995898998888766788731599997416664-
Q 002446          398 VSKNVIAQFR-------AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN-  469 (921)
Q Consensus       398 ~s~~~ia~l~-------aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~-  469 (921)
                      ..+..+..++       +|..+|++++|+|+|++|+|++.||+ |+|||+.++              ..+.++..+... 
T Consensus       219 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~-v~iwd~~t~--------------~~~~~l~~~~~~~  283 (311)
T d1nr0a1         219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATL--------------KVEKTIPVGTRIE  283 (311)
T ss_dssp             TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTT--------------EEEEEEECCSSGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCE-EEEEECCCC--------------CEEEEEECCCCCC
T ss_conf             4464112221111111002465321024788999999937996-999999999--------------6999997999863


Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             328999995699999999499919998468
Q 002446          470 AVIQDISFSDDSNWIMISSSRGTSHLFAIN  499 (921)
Q Consensus       470 a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~  499 (921)
                      ..+.++.|  ++++|++++.||.|++|++.
T Consensus       284 ~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         284 DQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             GCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             CEEEEEEE--CCCEEEEEECCCEEEEEECC
T ss_conf             32999995--19999999899979999588

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.5e-24  Score=157.08  Aligned_cols=117  Identities=16%  Similarity=0.211  Sum_probs=94.8

Q ss_pred             CCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             56688877999989998168893148988589998899999999966997899995898998888766788731599997
Q 002446          384 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       384 ~~~~~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L  463 (921)
                      +.+..++.|++||+.+++++..+.+|..+|++++|+|+|.+|++++.||+ |++|++...              ..+..+
T Consensus       200 ~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~~~--------------~~~~~~  264 (340)
T d1tbga_         200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRAD--------------QELMTY  264 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT--------------EEEEEE
T ss_pred             EEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCE-EEEEEECCC--------------CCCCCC
T ss_conf             87605736999999999488999578898589999799899999969996-999752122--------------111111


Q ss_pred             ECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCCC
Q ss_conf             4166643289999956999999994999199984689998402237888766
Q 002446          464 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l~~H~~~~~  515 (921)
                      ........|.+++|+|++++|++++.||+|+||++........+++|.+.+.
T Consensus       265 ~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~  316 (340)
T d1tbga_         265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS  316 (340)
T ss_dssp             CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             CCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEE
T ss_conf             1224457458999989999999997979899999999939899848999789

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=9.7e-25  Score=158.18  Aligned_cols=249  Identities=11%  Similarity=0.126  Sum_probs=169.5

Q ss_pred             CCCCEEEEEEECCCCCCCCCCEEEEEECCCC-EEEEECCCCCC--EEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             9985899998203577787885999981695-89997158998--17833430478899999208987745457434678
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADN--VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVR  163 (921)
Q Consensus        87 ~kd~V~w~~Fd~l~~d~~~~~~vLllG~~~G-fqVWDi~~~g~--~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~r  163 (921)
                      ..|.|+.++|++   ++    +.|++|..+| ++|||++. ++  ....+..|+++|.++++.|+              .
T Consensus         6 ~~~pIt~~~~s~---dg----~~la~~~~~~~i~iw~~~~-~~~~~~~~l~gH~~~V~~l~fsp~--------------~   63 (371)
T d1k8kc_           6 LVEPISCHAWNK---DR----TQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPD--------------S   63 (371)
T ss_dssp             CSSCCCEEEECT---TS----SEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETT--------------T
T ss_pred             CCCCEEEEEECC---CC----CEEEEEECCCEEEEEECCC-CCEEEEEEECCCCCCEEEEEECCC--------------C
T ss_conf             998838999989---99----9999994889899998889-978999995588998889999799--------------9


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC---CCCEEEEEEC--CCEE
Q ss_conf             8899992898867754457854334899887678899987896999997899919999938---9978999973--9899
Q 002446          164 PLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVV  238 (921)
Q Consensus       164 PLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f---~S~V~sI~~S--~riL  238 (921)
                      .+|+.++.          |                       ++|++||+.+++....+.+   ...|..+.++  .+.+
T Consensus        64 ~~l~s~s~----------D-----------------------~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l  110 (371)
T d1k8kc_          64 NRIVTCGT----------D-----------------------RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF  110 (371)
T ss_dssp             TEEEEEET----------T-----------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEE
T ss_pred             CEEEEEEC----------C-----------------------CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999979----------9-----------------------93999862033211001223221100011111112110


Q ss_pred             EE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECC--CEEEECCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf             99-9199899998899947799961887558899998774456213447--24896189840038986588655445455
Q 002446          239 AI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSF  315 (921)
Q Consensus       239 AV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgp--RwLAyas~~~~~s~~GrvsPq~l~~s~~~  315 (921)
                      ++ +.++.|++|+...................        ....++++|  ++||.+                       
T Consensus       111 ~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~--------~v~~v~~~p~~~~l~s~-----------------------  159 (371)
T d1k8kc_         111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRS--------TVLSLDWHPNSVLLAAG-----------------------  159 (371)
T ss_dssp             EEEETTSSEEEEEEETTTTEEEEEEECTTCCS--------CEEEEEECTTSSEEEEE-----------------------
T ss_pred             EEECCCCCCEEEEEECCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCEECC-----------------------
T ss_conf             00002576302544203343311100101112--------22111111111110001-----------------------


Q ss_pred             CCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             66568996300011000000101157517765421233323456898677443358998899546766566888779999
Q 002446          316 SGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVR  395 (921)
Q Consensus       316 ~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~Iw  395 (921)
                                                                                             ..+|.|++|
T Consensus       160 -----------------------------------------------------------------------s~D~~v~v~  168 (371)
T d1k8kc_         160 -----------------------------------------------------------------------SCDFKCRIF  168 (371)
T ss_dssp             -----------------------------------------------------------------------ETTSCEEEE
T ss_pred             -----------------------------------------------------------------------CCCCEEEEE
T ss_conf             -----------------------------------------------------------------------347679998


Q ss_pred             ECC------------------CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCE
Q ss_conf             899------------------98168893148988589998899999999966997899995898998888766788731
Q 002446          396 DIV------------------SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY  457 (921)
Q Consensus       396 Dl~------------------s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~  457 (921)
                      |..                  .+..+.....|...|.+++|+|+|++|++++.||+ |++||+.++              
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~~~--------------  233 (371)
T d1k8kc_         169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKK--------------  233 (371)
T ss_dssp             ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGT--------------
T ss_pred             EECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCC-CEEEEEECC--------------
T ss_conf             40157643100122111111110112440476674789875123321000014786-058864101--------------


Q ss_pred             EEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEECCC
Q ss_conf             59999741666432899999569999999949991999846899984022378
Q 002446          458 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT  510 (921)
Q Consensus       458 ~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l~~H  510 (921)
                      ..+..+.. + ...|.+++|+||+++||+++ |+.+++|..........+..+
T Consensus       234 ~~~~~~~~-~-~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~  283 (371)
T d1k8kc_         234 MAVATLAS-E-TLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGR  283 (371)
T ss_dssp             TEEEEEEC-S-SCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCC
T ss_pred             CCEEEEEC-C-CCCCEEEEECCCCCEEEEEC-CCCEEEEEEECCCCEEEEEEE
T ss_conf             21000001-4-66520365469997999981-992678776089862887202

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4e-24  Score=154.58  Aligned_cols=99  Identities=12%  Similarity=0.204  Sum_probs=52.6

Q ss_pred             CCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEE---
Q ss_conf             88779999899981688931489885899988999999999669978999958989988887667887315999974---
Q 002446          388 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---  464 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~---  464 (921)
                      .+|.+++||..+.........+...+..+.+.++|.+|++++.||+ |++|++.++              ..+.++.   
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~i~~~~~~--------------~~~~~~~~~~  247 (388)
T d1erja_         183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA-VRVWDSETG--------------FLVERLDSEN  247 (388)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSC-EEEEETTTC--------------CEEEEEC---
T ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCE-EEEEECCCC--------------CCCEEECCCC
T ss_conf             1015654101111110000124544211236887875899738981-999634557--------------3000102443


Q ss_pred             ---CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf             ---16664328999995699999999499919998468999
Q 002446          465 ---RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG  502 (921)
Q Consensus       465 ---RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g  502 (921)
                         .++ ...|.+++|+||+++|++++.|+++++|++....
T Consensus       248 ~~~~~h-~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~  287 (388)
T d1erja_         248 ESGTGH-KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  287 (388)
T ss_dssp             ---CCC-SSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             CCCCCC-CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
T ss_conf             334577-8987899997999999999789928987515776

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=1.8e-23  Score=150.77  Aligned_cols=113  Identities=7%  Similarity=0.093  Sum_probs=70.3

Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCCEEEEE-EEECCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             9999985899998203577787885999981-6958999715899817833-4304788999992089877454574346
Q 002446           84 DESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLV-SRYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        84 ~~~~kd~V~w~~Fd~l~~d~~~~~~vLllG~-~~GfqVWDi~~~g~~~eiv-S~~dGpVr~i~ilP~P~~~~~~~d~F~~  161 (921)
                      ..+|++.|..+.|.+   ++    +.|+.|. ++.+++||+++ +.....+ ..|.++|.++.+.|+             
T Consensus         8 ~~GH~~~V~~l~~s~---dg----~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~h~~~v~~v~~~~~-------------   66 (299)
T d1nr0a2           8 RYGHNKAITALSSSA---DG----KTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSK-------------   66 (299)
T ss_dssp             ECCCSSCEEEEEECT---TS----SEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTT-------------
T ss_pred             CCCCCCCCEEEEECC---CC----CEEEEECCCCEEEEEECCC-CCEEEEECCCCCCCEEEEEEECC-------------
T ss_conf             488887828999979---99----9999990899299999999-96889983788774899884033-------------


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE----EEEEECCCCEEEEEEC--C
Q ss_conf             788899992898867754457854334899887678899987896999997899919----9999389978999973--9
Q 002446          162 VRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY----VHMLKFRSPIYSVRCS--S  235 (921)
Q Consensus       162 ~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~----V~tL~f~S~V~sI~~S--~  235 (921)
                       ..+++...+                                  ..+++|++.....    .........+..+.++  +
T Consensus        67 -g~~~~~~~d----------------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  111 (299)
T d1nr0a2          67 -GDLFTVSWD----------------------------------DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG  111 (299)
T ss_dssp             -SCEEEEETT----------------------------------TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS
T ss_pred             -CEEECCCCE----------------------------------EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -112102310----------------------------------268873167762011100011113443210011221


Q ss_pred             CEEEEEECCEEEEEECC
Q ss_conf             89999919989999889
Q 002446          236 RVVAICQAAQVHCFDAA  252 (921)
Q Consensus       236 riLAVa~~~~I~IfDl~  252 (921)
                      +++++...+.+.+|+..
T Consensus       112 ~~~~~~~~~~i~~~~~~  128 (299)
T d1nr0a2         112 DIAVAACYKHIAIYSHG  128 (299)
T ss_dssp             SCEEEEESSEEEEEETT
T ss_pred             CCCCCCCCCCCCCCCCC
T ss_conf             11112222222111111

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2e-23  Score=150.56  Aligned_cols=118  Identities=15%  Similarity=0.248  Sum_probs=97.1

Q ss_pred             CCCCCCCCEEEEEECCCCCEEEEEC------CCCCCEEEEEECCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCC
Q ss_conf             6566888779999899981688931------48988589998899999999966997--899995898998888766788
Q 002446          383 FPDADNVGMVIVRDIVSKNVIAQFR------AHKSPISALCFDPSGILLVTASVQGH--NINIFKIIPGILGTSSACDAG  454 (921)
Q Consensus       383 ~~~~~~~G~V~IwDl~s~~~ia~l~------aH~~pIsaLaFSPdGtlLATaS~dGt--~IrIwdi~~~~~~~~s~~~~~  454 (921)
                      ++.+..+|.|+|||+.+++++..++      +|..+|.+|+|+|||++|++++.|++  .|++||+.++           
T Consensus       198 lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g-----------  266 (393)
T d1sq9a_         198 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-----------  266 (393)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-----------
T ss_pred             EEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCC-----------
T ss_conf             999938982999860233211000011111242563877004665320112428988421001035321-----------


Q ss_pred             CCEEEEEEEE------------CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCCC
Q ss_conf             7315999974------------166643289999956999999994999199984689998402237888766
Q 002446          455 TSYVHLYRLQ------------RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       455 ~~~~~l~~L~------------RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l~~H~~~~~  515 (921)
                         ..+..+.            .||.. .|++|+|+||+++|++++.|++|+||++.++.....+++|.+.+.
T Consensus       267 ---~~~~~l~~~~~~~~~~~~~~gH~~-~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         267 ---ERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             ---CEEEEECBC--------CCBSBSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             ---EEEEEECCCCCCCCCEEEEECCCC-CEEEECCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf             ---344431156666431023202358-666001389888069877999899999999979999988687613

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-22  Score=144.56  Aligned_cols=280  Identities=17%  Similarity=0.205  Sum_probs=161.2

Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCEEEEEE-CCCCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             999998589999820357778788599998-1695899971589981783343047889999920898774545743467
Q 002446           84 DESSHDQVLWAGFDKLESEAGATRRVLLLG-YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        84 ~~~~kd~V~w~~Fd~l~~d~~~~~~vLllG-~~~GfqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~  162 (921)
                      ..+|++.|.. +|+.   ++    +.|+.| .++-++|||+++ ++....+..|.++|.++.+.|               
T Consensus        12 l~GH~~~V~s-~~~~---~g----~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~h~~~V~~v~~~~---------------   67 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQF---CG----NRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRD---------------   67 (342)
T ss_dssp             EECSTTSCEE-EEEE---ET----TEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEET---------------
T ss_pred             ECCCCCCEEE-EEEE---CC----CEEEEEECCCEEEEEECCC-CCEEEEEECCCCCEEEEEECC---------------
T ss_conf             8886875099-9997---89----9999991899099998999-979999948899989999479---------------


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCEEEE-
Q ss_conf             888999928988677544578543348998876788999878969999978999199999389-978999973989999-
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFR-SPIYSVRCSSRVVAI-  240 (921)
Q Consensus       163 rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f~-S~V~sI~~S~riLAV-  240 (921)
                       .+|+.++.          |                       +++++|+............. ..+.........+.. 
T Consensus        68 -~~l~s~s~----------D-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (342)
T d2ovrb2          68 -NIIISGST----------D-----------------------RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG  113 (342)
T ss_dssp             -TEEEEEET----------T-----------------------SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEE
T ss_pred             -CCCCCCEE----------C-----------------------CCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCC
T ss_conf             -86321000----------0-----------------------0111111110000000123330476520246522123


Q ss_pred             EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             91998999988999477999618875588999987744562134472489618984003898658865544545566568
Q 002446          241 CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFAS  320 (921)
Q Consensus       241 a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s  320 (921)
                      ..+..|.+|+..+.+....+.......            .........++....+      +                  
T Consensus       114 ~~d~~i~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~d------~------------------  157 (342)
T d2ovrb2         114 SRDATLRVWDIETGQCLHVLMGHVAAV------------RCVQYDGRRVVSGAYD------F------------------  157 (342)
T ss_dssp             ETTSEEEEEESSSCCEEEEEECCSSCE------------EEEEECSSCEEEEETT------S------------------
T ss_pred             CCCEEEEEEECCCCCCEEEEECCCCCC------------EEECCCCCEEEEECCC------C------------------
T ss_conf             444037874035563001110011110------------0000133302433589------8------------------


Q ss_pred             CCCCEEEHHHHCCHHHCCEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             99630001100000010115751-77654212333234568986774433589988995467665668887799998999
Q 002446          321 NGSRVAHYAKESSKHLAAGIVNL-GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS  399 (921)
Q Consensus       321 ~g~~Va~~A~~~sK~lasGl~~l-Gd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s  399 (921)
                         .+..+.....+.    +..+ +..                 .........       ...++.+..+|.|++||+..
T Consensus       158 ---~i~~~d~~~~~~----~~~~~~~~-----------------~~~~~~~~~-------~~~l~s~~~dg~i~~~d~~~  206 (342)
T d2ovrb2         158 ---MVKVWDPETETC----LHTLQGHT-----------------NRVYSLQFD-------GIHVVSGSLDTSIRVWDVET  206 (342)
T ss_dssp             ---CEEEEEGGGTEE----EEEECCCS-----------------SCEEEEEEC-------SSEEEEEETTSCEEEEETTT
T ss_pred             ---EEEEEECCCCEE----EEEECCCC-----------------CCCCCCCCC-------CCEEEEEECCCEEEEEECCC
T ss_conf             ---699952523436----67872754-----------------442100689-------99999995899399952556


Q ss_pred             CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCEEEEEEC
Q ss_conf             81688931489885899988999999999669978999958989988887667887315999974166-64328999995
Q 002446          400 KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-TNAVIQDISFS  478 (921)
Q Consensus       400 ~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~-t~a~I~sIaFS  478 (921)
                      .+++..+.+|...+.+++|++  .+|++++.||+ |++|++...              .....+.... +...+.+++| 
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~-i~iwd~~~~--------------~~~~~~~~~~~~~~~~~~~~~-  268 (342)
T d2ovrb2         207 GNCIHTLTGHQSLTSGMELKD--NILVSGNADST-VKIWDIKTG--------------QCLQTLQGPNKHQSAVTCLQF-  268 (342)
T ss_dssp             CCEEEEECCCCSCEEEEEEET--TEEEEEETTSC-EEEEETTTC--------------CEEEEECSTTSCSSCEEEEEE-
T ss_pred             CEEEEEECCCCCCEEEEECCC--CEEEEECCCCE-EEEEECCCC--------------CCCCCCCCCCEEEECEEECCC-
T ss_conf             536567416653205770689--99999748988-999865544--------------221112210001101000013-


Q ss_pred             CCCCEEEEEECCCCEEEEECCCCCCCEEE
Q ss_conf             69999999949991999846899984022
Q 002446          479 DDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       479 pDs~~LAsgS~DGTVhIwdi~~~g~~~~l  507 (921)
                       +++++++++.||+|+||++.+......+
T Consensus       269 -~~~~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         269 -NKNFVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             -CSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             -CCCEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf             -7984499908998999999999798998

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=8.4e-23  Score=146.89  Aligned_cols=245  Identities=13%  Similarity=0.133  Sum_probs=149.6

Q ss_pred             CCCEEEEEEECCCCCCCCCCEEEEEECC-CCEEEEECCCCCCEEE-------EEEEECCCEEEEEEECCCCCCCCCCCCC
Q ss_conf             9858999982035777878859999816-9589997158998178-------3343047889999920898774545743
Q 002446           88 HDQVLWAGFDKLESEAGATRRVLLLGYR-SGFQVWDVEEADNVHD-------LVSRYDGPVSFMQMLPRPITSKRSRDKF  159 (921)
Q Consensus        88 kd~V~w~~Fd~l~~d~~~~~~vLllG~~-~GfqVWDi~~~g~~~e-------ivS~~dGpVr~i~ilP~P~~~~~~~d~F  159 (921)
                      ...|..++|.+.. ++    .+|+.|.. +-++|||+........       .+..+.++|..+.+.++           
T Consensus        63 ~~~v~~v~fsP~~-~g----~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~-----------  126 (325)
T d1pgua1          63 SSVVTTVKFSPIK-GS----QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-----------  126 (325)
T ss_dssp             TSCEEEEEECSST-TC----CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-----------
T ss_pred             CCCEEEEEEEECC-CC----CEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCC-----------
T ss_conf             9988999981179-99----7999994899779854058862156510025411365673779998999-----------


Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEEECC---
Q ss_conf             46788899992898867754457854334899887678899987896999997899919999938-99789999739---
Q 002446          160 AEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---  235 (921)
Q Consensus       160 ~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f-~S~V~sI~~S~---  235 (921)
                         ...|++++.+.        |                       ..+++|+..+++++..++. ...|..+.+++   
T Consensus       127 ---~~~l~~~~~~~--------~-----------------------~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  172 (325)
T d1pgua1         127 ---GRRLCVVGEGR--------D-----------------------NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP  172 (325)
T ss_dssp             ---SSEEEEEECCS--------S-----------------------CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSS
T ss_pred             ---CCCCCEEECCC--------C-----------------------CEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             ---88220100124--------4-----------------------0478885023311001200123432111123432


Q ss_pred             CEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCCCCCCCCCCC
Q ss_conf             89999-91998999988999477999618875588999987744562134472489618984003898658865544545
Q 002446          236 RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRS  314 (921)
Q Consensus       236 riLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~  314 (921)
                      .++++ +.++.|++||..+.+...++.++...            ..++    .-++|.             |+       
T Consensus       173 ~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~------------~~~v----~~v~~~-------------pd-------  216 (325)
T d1pgua1         173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ------------GSFV----RDVEFS-------------PD-------  216 (325)
T ss_dssp             CEEEEEETTTEEEEEETTTBEEEEEECSSSCT------------TCCE----EEEEEC-------------ST-------
T ss_pred             CEEEEEECCCCCCCCCCCCCCCCEECCCCCCC------------CCCC----EEEEEC-------------CC-------
T ss_conf             06888621112211112211000000001577------------7752----776303-------------45-------


Q ss_pred             CCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             56656899630001100000010115751776542123332345689867744335899889954676656688877999
Q 002446          315 FSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIV  394 (921)
Q Consensus       315 ~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~I  394 (921)
                            .+.                                                          .++.+..+|.|++
T Consensus       217 ------~~~----------------------------------------------------------~l~s~~~d~~i~i  232 (325)
T d1pgua1         217 ------SGE----------------------------------------------------------FVITVGSDRKISC  232 (325)
T ss_dssp             ------TCC----------------------------------------------------------EEEEEETTCCEEE
T ss_pred             ------CCE----------------------------------------------------------ECCCCCCCCCEEE
T ss_conf             ------310----------------------------------------------------------0001123321013


Q ss_pred             EECCCCCEEEEECCCCCCEEEEEEC---CCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf             9899981688931489885899988---9999999996699789999589899888876678873159999741666432
Q 002446          395 RDIVSKNVIAQFRAHKSPISALCFD---PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV  471 (921)
Q Consensus       395 wDl~s~~~ia~l~aH~~pIsaLaFS---PdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~  471 (921)
                      ||+.+++++..+++|..++..+.|+   |||++|++++.||+ |+|||+.++              ..+..+..+.+...
T Consensus       233 wd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~iwd~~~~--------------~~~~~~~~~~~~~~  297 (325)
T d1pgua1         233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTS--------------KCVQKWTLDKQQLG  297 (325)
T ss_dssp             EETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEEEETTTT--------------EEEEEEECCTTCGG
T ss_pred             EEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCE-EEEEECCCC--------------CEEEEEEECCCCCC
T ss_conf             430012221111111111111000000368999999958993-999999999--------------78899995487406


Q ss_pred             EE--EEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             89--9999569999999949991999846
Q 002446          472 IQ--DISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       472 I~--sIaFSpDs~~LAsgS~DGTVhIwdi  498 (921)
                      +.  .+.|.++ .+|++++.||+++||+|
T Consensus       298 ~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         298 NQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             CEEEEEEECCC-CEEEEEECCCEEEEEEC
T ss_conf             76999998899-99999979999999979

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4.7e-20  Score=130.84  Aligned_cols=272  Identities=11%  Similarity=0.131  Sum_probs=161.8

Q ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCC-EEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             99999985899998203577787885999981695-89997158998178334304788999992089877454574346
Q 002446           83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~l~~d~~~~~~vLllG~~~G-fqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~  161 (921)
                      ...+|++.|..+.|..   ++    .+|+.|..+| ++|||+.+ ++....+..|.++|.++.+.|.             
T Consensus        50 tL~GH~~~I~~l~~s~---~~----~~l~sgs~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~v~~~~~-------------  108 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGT---DS----RLLVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPS-------------  108 (340)
T ss_dssp             EECCCSSCEEEEEECT---TS----SEEEEEETTTEEEEEETTT-TEEEEEEECSCSCEEEEEECTT-------------
T ss_pred             EECCCCCCEEEEEECC---CC----CEEEEEECCCCEEEEECCC-CEEEEEEECCCCCEEEEEEECC-------------
T ss_conf             9888789888999989---99----9999997899555631021-0257997246533775676012-------------


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCC-----CCCCCCCCCC-------CCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCCE
Q ss_conf             78889999289886775445785-----4334899887-------678899987896999997899919999938-9978
Q 002446          162 VRPLLVFCADGSRSCGTKVQDGL-----ATACNGTSAN-------YHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPI  228 (921)
Q Consensus       162 ~rPLLavv~~g~~~g~~~~~Dg~-----~~~~~g~~~~-------~h~~~~~~~~~~tVriWDLkTg~~V~tL~f-~S~V  228 (921)
                       ..+++.++.......-......     .....+....       ................|...+......... ...+
T Consensus       109 -~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (340)
T d1tbga_         109 -GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV  187 (340)
T ss_dssp             -SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCE
T ss_pred             -CEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             -1144310133201013322221222111001354211011111111111111244543200123221111123310157


Q ss_pred             EEEEEC--CCEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCC
Q ss_conf             999973--989999-91998999988999477999618875588999987744562134472489618984003898658
Q 002446          229 YSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVN  305 (921)
Q Consensus       229 ~sI~~S--~riLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~Grvs  305 (921)
                      ....+.  ..+++. ..++.|++||+.+.+++.++..+..               ++    .-+++.             
T Consensus       188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~---------------~i----~~v~~~-------------  235 (340)
T d1tbga_         188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES---------------DI----NAICFF-------------  235 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSS---------------CE----EEEEEC-------------
T ss_pred             EEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC---------------CE----EEEEEC-------------
T ss_conf             6300124421268760573699999999948899957889---------------85----899997-------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86554454556656899630001100000010115751776542123332345689867744335899889954676656
Q 002446          306 PQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPD  385 (921)
Q Consensus       306 Pq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~  385 (921)
                                                                            |++                  ..++.
T Consensus       236 ------------------------------------------------------p~~------------------~~l~s  243 (340)
T d1tbga_         236 ------------------------------------------------------PNG------------------NAFAT  243 (340)
T ss_dssp             ------------------------------------------------------TTS------------------SEEEE
T ss_pred             ------------------------------------------------------CCC------------------CEEEE
T ss_conf             ------------------------------------------------------998------------------99999


Q ss_pred             CCCCCEEEEEECCCCCEEEEEC--CCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             6888779999899981688931--48988589998899999999966997899995898998888766788731599997
Q 002446          386 ADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL  463 (921)
Q Consensus       386 ~~~~G~V~IwDl~s~~~ia~l~--aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L  463 (921)
                      +..+|.|++||+.....+..+.  .|..+|.+++|+|+|.+|++++.||+ |+|||+.++              ..+..+
T Consensus       244 ~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~--------------~~~~~~  308 (340)
T d1tbga_         244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKA--------------DRAGVL  308 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC-EEEEETTTC--------------CEEEEE
T ss_pred             EECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCE-EEEEECCCC--------------CEEEEE
T ss_conf             96999699975212211111112244574589999899999999979798-999999999--------------398998


Q ss_pred             ECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             4166643289999956999999994999199984
Q 002446          464 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA  497 (921)
Q Consensus       464 ~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwd  497 (921)
                      . ++. ..|.+++|+||+++|++++.||+|+||+
T Consensus       309 ~-~H~-~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         309 A-GHD-NRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             C-CCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             C-CCC-CCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf             4-899-9789999908999999990699799859

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.1e-21  Score=137.76  Aligned_cols=258  Identities=13%  Similarity=0.213  Sum_probs=164.9

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             78334304788999992089877454574346788899992898867754457854334899887678899987896999
Q 002446          130 HDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVH  209 (921)
Q Consensus       130 ~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVr  209 (921)
                      +..+..|.++|.++++.|.              .++|+.++.          |                       ++|+
T Consensus        10 ~~~L~GH~~~I~~l~~sp~--------------~~~l~s~s~----------D-----------------------g~i~   42 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPV--------------FSVMVSASE----------D-----------------------ATIK   42 (317)
T ss_dssp             SCEEECCSSCEEEEEECSS--------------SSEEEEEES----------S-----------------------SCEE
T ss_pred             CEEECCCCCCEEEEEECCC--------------CCEEEEEEC----------C-----------------------CEEE
T ss_conf             4898588887689999389--------------899999938----------9-----------------------9299


Q ss_pred             EEECCCCCEEEEEEC-CCCEEEEEEC--CCEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             997899919999938-9978999973--989999-919989999889994779996188755889999877445621344
Q 002446          210 FYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVG  285 (921)
Q Consensus       210 iWDLkTg~~V~tL~f-~S~V~sI~~S--~riLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlg  285 (921)
                      +||+.+++++++++. ...|.++.++  ..+++. .....+.+|+....+....+..+...            ...+...
T Consensus        43 iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~  110 (317)
T d1vyhc1          43 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN------------VSSVSIM  110 (317)
T ss_dssp             EEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC------------EEEEEEC
T ss_pred             EEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------CEEEECC
T ss_conf             9989999799999578886777763011110111111111011100111111110000000------------0000016


Q ss_pred             C--CEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7--24896189840038986588655445455665689963000110000001011575177654212333234568986
Q 002446          286 P--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ  363 (921)
Q Consensus       286 p--RwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~  363 (921)
                      +  ..++..+.+-                           .+..+..+..+.+. -+  .+...  ..  .+-...|+  
T Consensus       111 ~~~~~~~~~~~d~---------------------------~~~~~~~~~~~~~~-~~--~~~~~--~~--~~~~~~~~--  154 (317)
T d1vyhc1         111 PNGDHIVSASRDK---------------------------TIKMWEVQTGYCVK-TF--TGHRE--WV--RMVRPNQD--  154 (317)
T ss_dssp             SSSSEEEEEETTS---------------------------EEEEEETTTCCEEE-EE--ECCSS--CE--EEEEECTT--
T ss_pred             CCCCEEEEECCCC---------------------------CEEEEECCCCEEEE-EE--CCCCC--CC--EEEECCCC--
T ss_conf             9985577652675---------------------------23575114430346-87--16777--63--00001667--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCC--------------------C
Q ss_conf             77443358998899546766566888779999899981688931489885899988999--------------------9
Q 002446          364 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG--------------------I  423 (921)
Q Consensus       364 ~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdG--------------------t  423 (921)
                                      ...++.+..+|.|++|++.+...+..+..|...+.+++|+|++                    .
T Consensus       155 ----------------~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (317)
T d1vyhc1         155 ----------------GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP  218 (317)
T ss_dssp             ----------------SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred             ----------------CCEEEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCC
T ss_conf             ----------------9999999279829997512540347882477873379986325641110345630343025886


Q ss_pred             EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf             99999669978999958989988887667887315999974166643289999956999999994999199984689998
Q 002446          424 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG  503 (921)
Q Consensus       424 lLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~  503 (921)
                      ++++++.||+ |++|++.++              ..+.++. ++. ..|.+++|+|++++|++++.||+|+||++.....
T Consensus       219 ~~~~~~~d~~-i~~~~~~~~--------------~~~~~~~-~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  281 (317)
T d1vyhc1         219 FLLSGSRDKT-IKMWDVSTG--------------MCLMTLV-GHD-NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC  281 (317)
T ss_dssp             EEEEEETTSE-EEEEETTTT--------------EEEEEEE-CCS-SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred             EEEECCCCCE-EEEEECCCC--------------CEEEEEE-CCC-CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE
T ss_conf             1475169978-999888999--------------6889996-889-9879999879999999997989499999999919


Q ss_pred             CEEECCCCCCCC
Q ss_conf             402237888766
Q 002446          504 SVNFQPTDANFT  515 (921)
Q Consensus       504 ~~~l~~H~~~~~  515 (921)
                      ...+.+|.+.+.
T Consensus       282 ~~~~~~h~~~V~  293 (317)
T d1vyhc1         282 MKTLNAHEHFVT  293 (317)
T ss_dssp             CEEEECCSSCEE
T ss_pred             EEEECCCCCCEE
T ss_conf             999928999889

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.1e-21  Score=138.79  Aligned_cols=258  Identities=15%  Similarity=0.170  Sum_probs=144.4

Q ss_pred             CCCCCCCE-EEEEEECCCCCCCCCCEEEEEECCCC-EEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             99999858-99998203577787885999981695-89997158998178334304788999992089877454574346
Q 002446           84 DESSHDQV-LWAGFDKLESEAGATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAE  161 (921)
Q Consensus        84 ~~~~kd~V-~w~~Fd~l~~d~~~~~~vLllG~~~G-fqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~  161 (921)
                      ..+|++.| ..+.|+     +    ++|+.|..+| ++|||+.+ ++....+..|.++|.++++.|.             
T Consensus         8 L~GH~~~vitc~~~~-----~----~~l~tgs~Dg~i~vWd~~~-~~~~~~l~~H~~~V~~l~~s~~-------------   64 (355)
T d1nexb2           8 LRGHMTSVITCLQFE-----D----NYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHG-------------   64 (355)
T ss_dssp             EECCSSSCEEEEEEE-----T----TEEEEEETTTEEEEEETTT-TEEEEEEECCSSCEEEEEEETT-------------
T ss_pred             ECCCCCCCEEEEEEC-----C----CEEEEEECCCEEEEEECCC-CCEEEEEECCCCCEEEEEECCC-------------
T ss_conf             898378869999988-----9----9999991899099998999-9399999789998899998699-------------


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-E--EEEEEC--CC
Q ss_conf             788899992898867754457854334899887678899987896999997899919999938997-8--999973--98
Q 002446          162 VRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSP-I--YSVRCS--SR  236 (921)
Q Consensus       162 ~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f~S~-V--~sI~~S--~r  236 (921)
                        .+|+.++.          |                       ++|++|++...+.......... .  ......  .+
T Consensus        65 --~~l~s~s~----------D-----------------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (355)
T d1nexb2          65 --GILVSGST----------D-----------------------RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK  109 (355)
T ss_dssp             --TEEEEEET----------T-----------------------CCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEE
T ss_pred             --CEEEEEEC----------C-----------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             --99999964----------5-----------------------244321111111111110011111111111112322


Q ss_pred             EEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf             9999-919989999889994779996188755889999877445621344724896189840038986588655445455
Q 002446          237 VVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSF  315 (921)
Q Consensus       237 iLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~  315 (921)
                      .++. +.++.|++||+.+............              .+..      ......             .      
T Consensus       110 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~--------------~~~~------~~~~~~-------------~------  150 (355)
T d1nexb2         110 YIVTGSRDNTLHVWKLPKESSVPDHGEEHD--------------YPLV------FHTPEE-------------N------  150 (355)
T ss_dssp             EEEEEETTSEEEEEECCC-----------C--------------CCEE------ESCTTT-------------C------
T ss_pred             EEEEECCCCCEEEEECCCCCEECCCCCCCE--------------ECCC------EECCCC-------------C------
T ss_conf             045543888689998567730012465200--------------0100------000112-------------3------


Q ss_pred             CCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             66568996300011000000101157517765421233323456898677443358998899546766566888779999
Q 002446          316 SGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVR  395 (921)
Q Consensus       316 ~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~Iw  395 (921)
                            ...+..             .....   ..+.    ...+++                  ..++.+..++.|++|
T Consensus       151 ------~~~~~~-------------~~~~~---~~v~----~~~~~~------------------~~~~~~~~d~~i~~~  186 (355)
T d1nexb2         151 ------PYFVGV-------------LRGHM---ASVR----TVSGHG------------------NIVVSGSYDNTLIVW  186 (355)
T ss_dssp             ------TTEEEE-------------EECCS---SCEE----EEEEET------------------TEEEEEETTSCEEEE
T ss_pred             ------CCEEEE-------------EEECC---CCCC----CCCCCC------------------CEEEEECCCCEEEEE
T ss_conf             ------401210-------------11002---2210----000256------------------334421144204443


Q ss_pred             ECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEE
Q ss_conf             89998168893148988589998899999999966997899995898998888766788731599997416664328999
Q 002446          396 DIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI  475 (921)
Q Consensus       396 Dl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sI  475 (921)
                      |+.+.+.+..+.++...+.++.|+|++.++++++.||+ |++|++.++              ..+..+. ++. ..|.++
T Consensus       187 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~--------------~~~~~~~-~h~-~~v~~~  249 (355)
T d1nexb2         187 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENG--------------ELMYTLQ-GHT-ALVGLL  249 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTTC--------------CEEEEEC-CCS-SCCCEE
T ss_pred             ECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCE-EEEEECCCC--------------CCCCCCC-CCC-CCCCCC
T ss_conf             01311000110001233211111121002101245636-876301221--------------1111111-111-111111


Q ss_pred             EECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             99569999999949991999846899
Q 002446          476 SFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       476 aFSpDs~~LAsgS~DGTVhIwdi~~~  501 (921)
                      +|+  +++|++++.||+|++|++...
T Consensus       250 ~~~--~~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         250 RLS--DKFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             EEC--SSEEEEECTTSEEEEEETTTC
T ss_pred             CCC--CCEEEEEECCCCCCCCCCCCC
T ss_conf             232--100333201111111111111

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=3.4e-21  Score=137.51  Aligned_cols=255  Identities=11%  Similarity=0.121  Sum_probs=155.9

Q ss_pred             CCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99817833430478899999208987745457434678889999289886775445785433489988767889998789
Q 002446          126 ADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVP  205 (921)
Q Consensus       126 ~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~  205 (921)
                      +|.+.+++..|.++|.++++.|+              ..+|+.++.          |                       
T Consensus         1 ~g~~~~~~~GH~~~V~~l~~s~d--------------g~~l~s~s~----------D-----------------------   33 (299)
T d1nr0a2           1 LGSIDQVRYGHNKAITALSSSAD--------------GKTLFSADA----------E-----------------------   33 (299)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTT--------------SSEEEEEET----------T-----------------------
T ss_pred             CCCCCEECCCCCCCCEEEEECCC--------------CCEEEEECC----------C-----------------------
T ss_conf             98613684888878289999799--------------999999908----------9-----------------------


Q ss_pred             CEEEEEECCCCCEEEEEE--CCCCEEEEEEC--CCEEEEEECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             699999789991999993--89978999973--98999991998999988999477999618875588999987744562
Q 002446          206 TVVHFYSLRSQSYVHMLK--FRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP  281 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~--f~S~V~sI~~S--~riLAVa~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~p  281 (921)
                      ++|++||+.+++.++.+.  +...|.++.++  +++++++.++.|.+|++...... .......  ...      .....
T Consensus        34 g~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~-~~~~~~~--~~~------~~~~~  104 (299)
T d1nr0a2          34 GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD-SSKAVAN--KLS------SQPLG  104 (299)
T ss_dssp             SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC-TTSCCEE--ECS------SCEEE
T ss_pred             CEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEEECCCCEEEEEEECCCCCCCC-CCCCCCC--CCC------CCCCC
T ss_conf             92999999999688998378877489988403311210231026887316776201-1100011--113------44321


Q ss_pred             EEECC--CEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf             13447--2489618984003898658865544545566568996300011000000101157517765421233323456
Q 002446          282 LAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL  359 (921)
Q Consensus       282 iAlgp--RwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~  359 (921)
                      +++++  +.++.....                            .+..+...  + .. .+ ..+..      ..+-.+.
T Consensus       105 ~~~s~~g~~~~~~~~~----------------------------~i~~~~~~--~-~~-~~-~~~~~------~~~~~~s  145 (299)
T d1nr0a2         105 LAVSADGDIAVAACYK----------------------------HIAIYSHG--K-LT-EV-PISYN------SSCVALS  145 (299)
T ss_dssp             EEECTTSSCEEEEESS----------------------------EEEEEETT--E-EE-EE-ECSSC------EEEEEEC
T ss_pred             CCCCCCCCCCCCCCCC----------------------------CCCCCCCC--C-CC-CC-CCCCC------CCCCCCC
T ss_conf             0011221111122222----------------------------22111111--1-11-10-11112------3322111


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE-EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             898677443358998899546766566888779999899981688-9314898858999889999999996699789999
Q 002446          360 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIF  438 (921)
Q Consensus       360 p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~ia-~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIw  438 (921)
                      |++                  ..++.+..+|.|.+||+.+..... ....|..+|++++|+|+|++|++++.+|+ |++|
T Consensus       146 ~~~------------------~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~  206 (299)
T d1nr0a2         146 NDK------------------QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPY  206 (299)
T ss_dssp             TTS------------------CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEE
T ss_pred             CCC------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCC
T ss_conf             111------------------111111111111111111111111111111111111111111111111111111-1111


Q ss_pred             ECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEE
Q ss_conf             589899888876678873159999741666432899999569999999949991999846899984022
Q 002446          439 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       439 di~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l  507 (921)
                      ++..+..           ..++..+ .+ +...|.+++|+|++++|++++.||+++||++........+
T Consensus       207 ~~~~~~~-----------~~~~~~~-~~-h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  262 (299)
T d1nr0a2         207 SVANNFE-----------LAHTNSW-TF-HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII  262 (299)
T ss_dssp             EGGGTTE-----------ESCCCCC-CC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred             CCCCCCC-----------CCCCCCC-CC-CCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEE
T ss_conf             1111111-----------1111111-11-1111111124666451388828997999989999731489

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3e-21  Score=137.86  Aligned_cols=205  Identities=13%  Similarity=0.132  Sum_probs=134.7

Q ss_pred             CEEEEEECCCCC--EEEEEE-CCCCEEEEEEC--CCEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             699999789991--999993-89978999973--989999-919989999889994779996188755889999877445
Q 002446          206 TVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY  279 (921)
Q Consensus       206 ~tVriWDLkTg~--~V~tL~-f~S~V~sI~~S--~riLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~  279 (921)
                      +.|++||+.+++  +++.++ +..+|.+|.|+  +++|+. +.++.|++||+.+.+....+.....             .
T Consensus        29 ~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~-------------~   95 (371)
T d1k8kc_          29 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI-------------N   95 (371)
T ss_dssp             SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC-------------S
T ss_pred             CEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCC-------------C
T ss_conf             989999888997899999558899888999979999999997999399986203321100122322-------------1


Q ss_pred             CCEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf             62134472489618984003898658865544545566568996300011000000101157517765421233323456
Q 002446          280 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL  359 (921)
Q Consensus       280 ~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~  359 (921)
                      .++    .-++|..             .              +.                                    
T Consensus        96 ~~v----~~i~~~p-------------~--------------~~------------------------------------  108 (371)
T d1k8kc_          96 RAA----RCVRWAP-------------N--------------EK------------------------------------  108 (371)
T ss_dssp             SCE----EEEEECT-------------T--------------SS------------------------------------
T ss_pred             CCC----CCCCCCC-------------C--------------CC------------------------------------
T ss_conf             100----0111111-------------1--------------21------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE----EEEECCCCCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf             8986774433589988995467665668887799998999816----889314898858999889999999996699789
Q 002446          360 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV----IAQFRAHKSPISALCFDPSGILLVTASVQGHNI  435 (921)
Q Consensus       360 p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~----ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~I  435 (921)
                                            .++.+..++.+++|++.....    ....+.|...|.+++|+|+|++||+++.||+ +
T Consensus       109 ----------------------~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~-v  165 (371)
T d1k8kc_         109 ----------------------KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK-C  165 (371)
T ss_dssp             ----------------------EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC-E
T ss_pred             ----------------------CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCE-E
T ss_conf             ----------------------10000025763025442033433111001011122211111111111000134767-9


Q ss_pred             EEEECCCCCCCCCCC----CCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEECCCC
Q ss_conf             999589899888876----6788731599997416664328999995699999999499919998468999840223788
Q 002446          436 NIFKIIPGILGTSSA----CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD  511 (921)
Q Consensus       436 rIwdi~~~~~~~~s~----~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l~~H~  511 (921)
                      ++|+...........    .........++... + +...|.+++|+||+++|++++.|+++++|++........+..|.
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  243 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-S-SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET  243 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-C-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCEEEEEECC-C-CCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCC
T ss_conf             998401576431001221111111101124404-7-66747898751233210000147860588641012100000146


Q ss_pred             CCCC
Q ss_conf             8766
Q 002446          512 ANFT  515 (921)
Q Consensus       512 ~~~~  515 (921)
                      ..+.
T Consensus       244 ~~v~  247 (371)
T d1k8kc_         244 LPLL  247 (371)
T ss_dssp             CCEE
T ss_pred             CCCE
T ss_conf             6520

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.5e-21  Score=137.41  Aligned_cols=253  Identities=11%  Similarity=0.078  Sum_probs=160.2

Q ss_pred             CCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCC-CEEE--EEEEE-CCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             99858999982035777878859999816958999715899-8178--33430-47889999920898774545743467
Q 002446           87 SHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEAD-NVHD--LVSRY-DGPVSFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        87 ~kd~V~w~~Fd~l~~d~~~~~~vLllG~~~GfqVWDi~~~g-~~~e--ivS~~-dGpVr~i~ilP~P~~~~~~~d~F~~~  162 (921)
                      .+.++..+.|+.   ++    ..|+.+..+...|+.++... ...+  .+..| ..+|.++++.|..            .
T Consensus        16 ~~~~~t~l~~~~---~~----~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~------------~   76 (325)
T d1pgua1          16 QRNFTTHLSYDP---TT----NAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK------------G   76 (325)
T ss_dssp             CTTCCCCCEEET---TT----TEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSST------------T
T ss_pred             CCCCEEEEEECC---CC----CEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECC------------C
T ss_conf             799847999989---97----9999996998799997688887650289907899988999981179------------9


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE--------E-CCCCEEEEEE
Q ss_conf             888999928988677544578543348998876788999878969999978999199999--------3-8997899997
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHML--------K-FRSPIYSVRC  233 (921)
Q Consensus       163 rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL--------~-f~S~V~sI~~  233 (921)
                      ..+||..+.          |                       ++|++||+..++....+        . +..+|.++.+
T Consensus        77 g~~lasgs~----------D-----------------------g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~  123 (325)
T d1pgua1          77 SQYLCSGDE----------S-----------------------GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW  123 (325)
T ss_dssp             CCEEEEEET----------T-----------------------SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE
T ss_pred             CCEEEEEEC----------C-----------------------CCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEE
T ss_conf             979999948----------9-----------------------9779854058862156510025411365673779998


Q ss_pred             C--CCEEEEEE---CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCCCCC
Q ss_conf             3--98999991---998999988999477999618875588999987744562134472489618984003898658865
Q 002446          234 S--SRVVAICQ---AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQH  308 (921)
Q Consensus       234 S--~riLAVa~---~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq~  308 (921)
                      +  ++.++++.   +..+.+|+..+.+++..+..+..               ++    .-+++..             . 
T Consensus       124 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------------~v----~~~~~~~-------------~-  170 (325)
T d1pgua1         124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ---------------RI----NACHLKQ-------------S-  170 (325)
T ss_dssp             CTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS---------------CE----EEEEECS-------------S-
T ss_pred             CCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCC---------------CC----CCCCCCC-------------C-
T ss_conf             9998822010012440478885023311001200123---------------43----2111123-------------4-


Q ss_pred             CCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54454556656899630001100000010115751776542123332345689867744335899889954676656688
Q 002446          309 LMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADN  388 (921)
Q Consensus       309 l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~  388 (921)
                                   +..                                                         .++.+..
T Consensus       171 -------------~~~---------------------------------------------------------~~~~~~~  180 (325)
T d1pgua1         171 -------------RPM---------------------------------------------------------RSMTVGD  180 (325)
T ss_dssp             -------------SSC---------------------------------------------------------EEEEEET
T ss_pred             -------------CCC---------------------------------------------------------EEEEEEC
T ss_conf             -------------320---------------------------------------------------------6888621


Q ss_pred             CCEEEEEECCCCCEEEEE---CCCCCCEEEEEECCC-CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             877999989998168893---148988589998899-9999999669978999958989988887667887315999974
Q 002446          389 VGMVIVRDIVSKNVIAQF---RAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ  464 (921)
Q Consensus       389 ~G~V~IwDl~s~~~ia~l---~aH~~pIsaLaFSPd-GtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~  464 (921)
                      +|.+++||....+....+   .+|...|.+++|+|+ +.+|++++.||+ |++||+.++              ..+..++
T Consensus       181 d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~~--------------~~~~~l~  245 (325)
T d1pgua1         181 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSG--------------EFLKYIE  245 (325)
T ss_dssp             TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTC--------------CEEEECC
T ss_pred             CCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCC-EEEEEECCC--------------CCCCCCC
T ss_conf             1122111122110000000015777752776303453100001123321-013430012--------------2211111


Q ss_pred             CCCCCC---CEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEECCCC
Q ss_conf             166643---28999995699999999499919998468999840223788
Q 002446          465 RGLTNA---VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD  511 (921)
Q Consensus       465 RG~t~a---~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l~~H~  511 (921)
                       ++...   .+.+++| +|+++|++++.|++++||++........+..|.
T Consensus       246 -~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         246 -DDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             -BTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             -CCCCCCCCCEEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEEEEEECC
T ss_conf             -111111110000003-689999999589939999999997889999548

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=2.4e-20  Score=132.58  Aligned_cols=99  Identities=10%  Similarity=0.123  Sum_probs=68.2

Q ss_pred             EEEEECCCCCEEEEECCCCCCEEEEEECC---CCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf             99998999816889314898858999889---999999996699789999589899888876678873159999741666
Q 002446          392 VIVRDIVSKNVIAQFRAHKSPISALCFDP---SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       392 V~IwDl~s~~~ia~l~aH~~pIsaLaFSP---dGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t  468 (921)
                      +..+++..+.. ..+..+...+..+.+.+   ++.++++++.++. |++||+.+.               ++..+.    
T Consensus       256 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~---------------~~~~~~----  314 (360)
T d1k32a3         256 SSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTR---------------KVTEVK----  314 (360)
T ss_dssp             CEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEE-EEEEETTTC---------------CEEEEE----
T ss_pred             EEECCCCCCCE-EEEEECCCCCEEEEEEECCCCEEEEEECCCCCE-EEEEECCCC---------------EEEEEC----
T ss_conf             01012476752-675413898569999735997069996489987-999979997---------------498864----


Q ss_pred             CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEECCCCC
Q ss_conf             43289999956999999994999199984689998402237888
Q 002446          469 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA  512 (921)
Q Consensus       469 ~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l~~H~~  512 (921)
                       ..|.+++|||||++|++++.||++++|++.....+.++..+..
T Consensus       315 -~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~  357 (360)
T d1k32a3         315 -NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKR  357 (360)
T ss_dssp             -EEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSS
T ss_pred             -CCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCC
T ss_conf             -8868799999898999997899499999999985459984162

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.8e-21  Score=139.17  Aligned_cols=291  Identities=12%  Similarity=0.077  Sum_probs=159.3

Q ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCCEEEEEE--EECCCEEEEEEECCCCCCCCCCCCC
Q ss_conf             99999985899998203577787885999981-69589997158998178334--3047889999920898774545743
Q 002446           83 DDESSHDQVLWAGFDKLESEAGATRRVLLLGY-RSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKF  159 (921)
Q Consensus        83 ~~~~~kd~V~w~~Fd~l~~d~~~~~~vLllG~-~~GfqVWDi~~~g~~~eivS--~~dGpVr~i~ilP~P~~~~~~~d~F  159 (921)
                      -..+|+|.|..+.|.+   ++    .+|+.|. ++.++|||++......++..  .|.++|.++.+.|.           
T Consensus         6 ~~~~h~d~I~~l~fsp---~~----~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~-----------   67 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIP---SK----SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-----------   67 (342)
T ss_dssp             CSSCCSSCEEEEEEEG---GG----TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-----------
T ss_pred             CCCCCCCCEEEEEEEC---CC----CEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECC-----------
T ss_conf             6889989788899958---99----99999979992999975699863689885589998899999589-----------


Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC--CEEEEEE--CC
Q ss_conf             4678889999289886775445785433489988767889998789699999789991999993899--7899997--39
Q 002446          160 AEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS--PIYSVRC--SS  235 (921)
Q Consensus       160 ~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f~S--~V~sI~~--S~  235 (921)
                        ...+|+.++.          |                       ++|++|++..+.....+....  .......  +.
T Consensus        68 --~~~~l~sg~~----------d-----------------------~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (342)
T d1yfqa_          68 --TDLQIYVGTV----------Q-----------------------GEILKVDLIGSPSFQALTNNEANLGICRICKYGD  112 (342)
T ss_dssp             --SSEEEEEEET----------T-----------------------SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETT
T ss_pred             --CCCEEEECCC----------C-----------------------CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             --9978998126----------5-----------------------3114542044320000011111111111111111


Q ss_pred             CEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCE--EECCCEEEECCCC--CEECCCCCCCCCCCC
Q ss_conf             89999-919989999889994779996188755889999877445621--3447248961898--400389865886554
Q 002446          236 RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL--AVGPRWLAYSGSP--VVVSNDGRVNPQHLM  310 (921)
Q Consensus       236 riLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~pi--AlgpRwLAyas~~--~~~s~~GrvsPq~l~  310 (921)
                      ..++. +.+..+.+||+.+.................      .....+  ......++.++.+  +..|..         
T Consensus       113 ~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~~i~~~~~---------  177 (342)
T d1yfqa_         113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK------VKNKIFTMDTNSSRLIVGMNNSQVQWFRL---------  177 (342)
T ss_dssp             TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS------SCCCEEEEEECSSEEEEEESTTEEEEEES---------
T ss_pred             CCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCC------CEEEEEEEECCCCCEEEECCCCCEEEEEC---------
T ss_conf             111110122211102023444330230002430012------00000100016870246517984788760---------


Q ss_pred             CCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             45455665689963000110000001011575177654212333234568986774433589988995467665668887
Q 002446          311 QSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVG  390 (921)
Q Consensus       311 ~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G  390 (921)
                                          ...+....-....... ....   +....+..                 ...+..+..+|
T Consensus       178 --------------------~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~-----------------~~~~~~~s~dg  216 (342)
T d1yfqa_         178 --------------------PLCEDDNGTIEESGLK-YQIR---DVALLPKE-----------------QEGYACSSIDG  216 (342)
T ss_dssp             --------------------SCCTTCCCEEEECSCS-SCEE---EEEECSGG-----------------GCEEEEEETTS
T ss_pred             --------------------CCCCCCCEEEEECCCC-CCEE---EEEEECCC-----------------CCEEEEECCCC
T ss_conf             --------------------5676341112102542-2101---46763699-----------------98788654899


Q ss_pred             EEEEEECCCCCE---------E------EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             799998999816---------8------8931489885899988999999999669978999958989988887667887
Q 002446          391 MVIVRDIVSKNV---------I------AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT  455 (921)
Q Consensus       391 ~V~IwDl~s~~~---------i------a~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~  455 (921)
                      .+.+|++.....         .      .....|..+|++|+|+|+|.+|||++.||+ |+|||+.+.            
T Consensus       217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~-v~vWD~~~~------------  283 (342)
T d1yfqa_         217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTR------------  283 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTT------------
T ss_pred             EEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCE-EEEEECCCC------------
T ss_conf             5999980598640111235125655531477762354315996698447999879998-999999989------------


Q ss_pred             CEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf             315999974166643289999956999999994999199984689
Q 002446          456 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP  500 (921)
Q Consensus       456 ~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~  500 (921)
                        ..+..+.+++   .+..++|+|+++++|+++.|+++++|....
T Consensus       284 --~~l~~~~~~~---~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         284 --KKIKNFAKFN---EDSVVKIACSDNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             --EEEEECCCCS---SSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred             --CEEEEECCCC---CCEEEEEEECCCEEEEEECCCCEEEEEEEC
T ss_conf             --4988705899---987999994799999999199278830127

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-20  Score=132.71  Aligned_cols=279  Identities=11%  Similarity=0.196  Sum_probs=145.0

Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCEEEEEECC-CCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             9999858999982035777878859999816-958999715899817833430478899999208987745457434678
Q 002446           85 ESSHDQVLWAGFDKLESEAGATRRVLLLGYR-SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVR  163 (921)
Q Consensus        85 ~~~kd~V~w~~Fd~l~~d~~~~~~vLllG~~-~GfqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~r  163 (921)
                      ..+...|..+.||     +    +.|+.|.. +-++|||+++ +++...+..|.++|.++.+-+                
T Consensus        12 ~~~~~~V~c~~~d-----~----~~l~sgs~Dg~i~vWd~~~-~~~~~~l~~H~~~V~~v~~~~----------------   65 (293)
T d1p22a2          12 SETSKGVYCLQYD-----D----QKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQYDE----------------   65 (293)
T ss_dssp             CSSCCCEEEEECC-----S----SEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEECCS----------------
T ss_pred             CCCCCCEEEEEEC-----C----CEEEEEECCCEEEEEECCC-CCEEEEEECCCCCEEEEECCC----------------
T ss_conf             8999988999876-----9----9999992899399999999-919999926778776342363----------------


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCEEE-EE
Q ss_conf             889999289886775445785433489988767889998789699999789991999993899-7899997398999-99
Q 002446          164 PLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS-PIYSVRCSSRVVA-IC  241 (921)
Q Consensus       164 PLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f~S-~V~sI~~S~riLA-Va  241 (921)
                      .+|+.++.          |                       ++|++|+++++.......... ...........++ ..
T Consensus        66 ~~l~s~s~----------D-----------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (293)
T d1p22a2          66 RVIITGSS----------D-----------------------STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS  112 (293)
T ss_dssp             SEEEEEET----------T-----------------------SCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEE
T ss_pred             CEEECCCC----------C-----------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf             00210011----------1-----------------------01100000246410011111100001111110000013


Q ss_pred             ECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             19989999889994779996188755889999877445621344724896189840038986588655445455665689
Q 002446          242 QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN  321 (921)
Q Consensus       242 ~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~  321 (921)
                      ..+.+.+||..+...............         ....+...+..+...+.+                          
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~s~d--------------------------  157 (293)
T d1p22a2         113 KDRSIAVWDMASPTDITLRRVLVGHRA---------AVNVVDFDDKYIVSASGD--------------------------  157 (293)
T ss_dssp             TTSCEEEEECSSSSCCEEEEEECCCSS---------CEEEEEEETTEEEEEETT--------------------------
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCC---------CCCCCEECCCCCCCCCCC--------------------------
T ss_conf             566306861344544421210001135---------431100000220110699--------------------------


Q ss_pred             CCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf             96300011000000101157517765421233323456898677443358998899546766566888779999899981
Q 002446          322 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN  401 (921)
Q Consensus       322 g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~  401 (921)
                       ..+..+.....+.+. .+.  +..                 ..+......       ...++.+..+|.|++||+.+..
T Consensus       158 -~~i~~~d~~~~~~~~-~~~--~~~-----------------~~v~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~  209 (293)
T d1p22a2         158 -RTIKVWNTSTCEFVR-TLN--GHK-----------------RGIACLQYR-------DRLVVSGSSDNTIRLWDIECGA  209 (293)
T ss_dssp             -SEEEEEETTTCCEEE-EEE--CCS-----------------SCEEEEEEE-------TTEEEEEETTSCEEEEETTTCC
T ss_pred             -CCEEEECCCCCCEEE-EEC--CCC-----------------CCCCCCCCC-------CCEEEEECCCCEEEEEECCCCE
T ss_conf             -860410078883889-971--554-----------------453221689-------8758876589989998665561


Q ss_pred             EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCC
Q ss_conf             68893148988589998899999999966997899995898998888766788731599997416664328999995699
Q 002446          402 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS  481 (921)
Q Consensus       402 ~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs  481 (921)
                      .+..+.+|...|.+  +++++.+|++++.||+ |+|||+.........     .....+..+ .+|. ..|.+++|  |+
T Consensus       210 ~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~-----~~~~~~~~~-~~H~-~~V~~v~~--d~  277 (293)
T d1p22a2         210 CLRVLEGHEELVRC--IRFDNKRIVSGAYDGK-IKVWDLVAALDPRAP-----AGTLCLRTL-VEHS-GRVFRLQF--DE  277 (293)
T ss_dssp             EEEEECCCSSCEEE--EECCSSEEEEEETTSC-EEEEEHHHHTSTTSC-----TTTTEEEEE-CCCS-SCCCCEEE--CS
T ss_pred             EEEEECCCCEEEEE--CCCCCEEEEEECCCCE-EEEEECCCCCCCCCC-----CCCEEEEEE-CCCC-CCEEEEEE--CC
T ss_conf             46652143100000--1454107999867997-999988888644456-----775455784-5889-98899997--19


Q ss_pred             CEEEEEECCCCEEEEE
Q ss_conf             9999994999199984
Q 002446          482 NWIMISSSRGTSHLFA  497 (921)
Q Consensus       482 ~~LAsgS~DGTVhIwd  497 (921)
                      ++|++++.||+|+|||
T Consensus       278 ~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         278 FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCEEECCSSSEEEEEC
T ss_pred             CEEEEEECCCEEEEEC
T ss_conf             9999992299899959

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.7e-20  Score=130.86  Aligned_cols=236  Identities=12%  Similarity=0.116  Sum_probs=119.2

Q ss_pred             EECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             30478899999208987745457434678889999289886775445785433489988767889998789699999789
Q 002446          135 RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLR  214 (921)
Q Consensus       135 ~~dGpVr~i~ilP~P~~~~~~~d~F~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLk  214 (921)
                      .|..+|.++++.|+              ..+|+.+++                                  .+|++||+.
T Consensus        49 ~H~~~V~~v~fs~~--------------g~~latg~d----------------------------------g~V~iWd~~   80 (337)
T d1gxra_          49 NHGEVVCAVTISNP--------------TRHVYTGGK----------------------------------GCVKVWDIS   80 (337)
T ss_dssp             CCSSCCCEEEECSS--------------SSEEEEECB----------------------------------SEEEEEETT
T ss_pred             CCCCCEEEEEECCC--------------CCEEEEEEC----------------------------------CEEEEEECC
T ss_conf             99992899999899--------------999999979----------------------------------988997736


Q ss_pred             CCCE---EEEEE---CCCCEEEEEEC--CCEEEE-EECCEEEEEECCCCC--EEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             9919---99993---89978999973--989999-919989999889994--7799961887558899998774456213
Q 002446          215 SQSY---VHMLK---FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIGYGPLA  283 (921)
Q Consensus       215 Tg~~---V~tL~---f~S~V~sI~~S--~riLAV-a~~~~I~IfDl~T~~--~l~tl~t~p~~~g~p~~~~~~~~~~piA  283 (921)
                      ++..   +..+.   +...|.+++++  +++|++ +.++.|++||+....  ....+..+..            ....++
T Consensus        81 ~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------~v~~~~  148 (337)
T d1gxra_          81 HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP------------ACYALA  148 (337)
T ss_dssp             STTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS------------CEEEEE
T ss_pred             CCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCC
T ss_conf             77633116876404889968999986799889886123321111111111111111111111------------111111


Q ss_pred             ECC--CEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             447--248961898400389865886554454556656899630001100000010115751776542123332345689
Q 002446          284 VGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD  361 (921)
Q Consensus       284 lgp--RwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~  361 (921)
                      +++  .+|+.++.+.                           .+..+.....+...   ...+..               
T Consensus       149 ~~~~~~~l~s~~~d~---------------------------~i~~~~~~~~~~~~---~~~~~~---------------  183 (337)
T d1gxra_         149 ISPDSKVCFSCCSDG---------------------------NIAVWDLHNQTLVR---QFQGHT---------------  183 (337)
T ss_dssp             ECTTSSEEEEEETTS---------------------------CEEEEETTTTEEEE---EECCCS---------------
T ss_pred             CCCCCCCCCCCCCCC---------------------------CCCCCCCCCCCCCC---CCCCCC---------------
T ss_conf             111111111111111---------------------------11111111111111---111111---------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECC
Q ss_conf             86774433589988995467665668887799998999816889314898858999889999999996699789999589
Q 002446          362 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII  441 (921)
Q Consensus       362 ~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~  441 (921)
                        ..+....-...     ...++.+..+|.|++||+.+++.+..+ .|..+|.+++|+|++.+|++++.+|. |++|++.
T Consensus       184 --~~v~~l~~s~~-----~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~-i~i~d~~  254 (337)
T d1gxra_         184 --DGASCIDISND-----GTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVN  254 (337)
T ss_dssp             --SCEEEEEECTT-----SSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSC-EEEEETT
T ss_pred             --CCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCEEEEEECCCCCCCCEECCCCC-CCCCCCC
T ss_conf             --11110123444-----321122356655321111110000024-66661579997153030000002564-2111111


Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             899888876678873159999741666432899999569999999949991999846899
Q 002446          442 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       442 ~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~  501 (921)
                      ..              . .+.. .+ +...|.+++|+||+++|++++.||++++|++...
T Consensus       255 ~~--------------~-~~~~-~~-~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~  297 (337)
T d1gxra_         255 KP--------------D-KYQL-HL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             SS--------------C-EEEE-CC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             CC--------------C-CCCC-CC-CCCCCCEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf             11--------------1-0000-12-4565416999899999999948996999989999

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.4e-20  Score=130.50  Aligned_cols=265  Identities=11%  Similarity=0.139  Sum_probs=140.4

Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             99999858999982035777878859999816958999715899817833430478899999208987745457434678
Q 002446           84 DESSHDQVLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVR  163 (921)
Q Consensus        84 ~~~~kd~V~w~~Fd~l~~d~~~~~~vLllG~~~GfqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~r  163 (921)
                      ..+|.+.|..+.|++          ++..+.++-+++||+..      ....|.+.|.++.+.+.              .
T Consensus         9 l~gH~~~I~~l~~s~----------l~sgs~Dg~v~~Wd~~~------~~~~h~~~V~~~~~~~~--------------~   58 (287)
T d1pgua2           9 ISGHNKGITALTVNP----------LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA--------------Q   58 (287)
T ss_dssp             ECCCSSCEEEEETTT----------TEEEETTSCEEETTTTE------EECCCCSCEEEEECCST--------------T
T ss_pred             ECCCCCCEEEEEECC----------EEEEECCCEEEEEECCC------CCCCCCCCEEEEEECCC--------------C
T ss_conf             988798649999895----------78984899199998999------88887787899996599--------------7


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEC--CCEEEEE
Q ss_conf             88999928988677544578543348998876788999878969999978999199999389978999973--9899999
Q 002446          164 PLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC  241 (921)
Q Consensus       164 PLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f~S~V~sI~~S--~riLAVa  241 (921)
                      . ++.++.          |                       .+|++|++.      ..++.+.+..+.+.  ..+++++
T Consensus        59 ~-~~s~s~----------D-----------------------~~v~~w~~~------~~~~~~~~~~~~~~~~~~~~~~~   98 (287)
T d1pgua2          59 E-YSSISW----------D-----------------------DTLKVNGIT------KHEFGSQPKVASANNDGFTAVLT   98 (287)
T ss_dssp             C-CEEEET----------T-----------------------TEEEETTEE------EEECSSCEEEEEECSSSEEEEEE
T ss_pred             E-EEEEEE----------C-----------------------CCCCCCCCC------CCCCCCCEEEEEECCCCCEEEEE
T ss_conf             2-898861----------0-----------------------122211111------11112210146641678569996


Q ss_pred             ECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             19989999889994779996188755889999877445621344724896189840038986588655445455665689
Q 002446          242 QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN  321 (921)
Q Consensus       242 ~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~  321 (921)
                      .+..+.+|+..+.+....+.....             ...++.....++....+                          
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~v~~~~--------------------------  139 (287)
T d1pgua2          99 NDDDLLILQSFTGDIIKSVRLNSP-------------GSAVSLSQNYVAVGLEE--------------------------  139 (287)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSC-------------EEEEEECSSEEEEEETT--------------------------
T ss_pred             ECCCCEEEECCCEEEEEECCCCCE-------------EEEEECCCCCEEEECCC--------------------------
T ss_conf             033210000110035431012220-------------35652147511100022--------------------------


Q ss_pred             CCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf             96300011000000101157517765421233323456898677443358998899546766566888779999899981
Q 002446          322 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN  401 (921)
Q Consensus       322 g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~  401 (921)
                      +..+.-|.....+..    ..+.......++..  ...|++                  ..++.+..+|.|++||+.++.
T Consensus       140 ~~~v~~~~~~~~~~~----~~~~~~~~~~v~~~--~~s~~~------------------~~l~~g~~dg~i~i~d~~~~~  195 (287)
T d1pgua2         140 GNTIQVFKLSDLEVS----FDLKTPLRAKPSYI--SISPSE------------------TYIAAGDVMGKILLYDLQSRE  195 (287)
T ss_dssp             TSCEEEEETTEEEEE----EECSSCCSSCEEEE--EECTTS------------------SEEEEEETTSCEEEEETTTTE
T ss_pred             CCEEEEEECCCCCEE----EEEEECCCCCEEEE--EECCCC------------------CCCCCCCCCCCCCCEEECCCC
T ss_conf             100021000122100----01210247853699--951676------------------521101111110000002332


Q ss_pred             EEE-EECCCCCCEEEEEECCC----------CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf             688-93148988589998899----------9999999669978999958989988887667887315999974166643
Q 002446          402 VIA-QFRAHKSPISALCFDPS----------GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA  470 (921)
Q Consensus       402 ~ia-~l~aH~~pIsaLaFSPd----------GtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a  470 (921)
                      .+. .+.+|..+|.+++|+|+          +.+|+|++.||+ |+||++...             ... ....+++. .
T Consensus       196 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~-------------~~~-~~~~~~h~-~  259 (287)
T d1pgua2         196 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRP-------------MKI-IKALNAHK-D  259 (287)
T ss_dssp             EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCT-------------TCC-EEETTSST-T
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCE-EEEEECCCC-------------CEE-EEEECCCC-C
T ss_conf             1100011111111000001365410012678870276649995-999888999-------------758-99927878-9


Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             2899999569999999949991999846
Q 002446          471 VIQDISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       471 ~I~sIaFSpDs~~LAsgS~DGTVhIwdi  498 (921)
                      .|.+++|+||+ .|++++.|++|+||++
T Consensus       260 ~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         260 GVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf             85899998999-8999979992999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=6.4e-20  Score=130.09  Aligned_cols=114  Identities=11%  Similarity=0.142  Sum_probs=86.5

Q ss_pred             CCCCCEEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             6888779999899981688931-489885899988999999999669978999958989988887667887315999974
Q 002446          386 ADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ  464 (921)
Q Consensus       386 ~~~~G~V~IwDl~s~~~ia~l~-aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~  464 (921)
                      +...+.|++|++........+. .|..+|++|+|+|+|++|++++.||. |++||+..+              ..+....
T Consensus       137 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~~--------------~~~~~~~  201 (287)
T d1pgua2         137 LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSR--------------EVKTSRW  201 (287)
T ss_dssp             ETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT--------------EEEECCS
T ss_pred             CCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCC-CCCEEECCC--------------CCCCCCC
T ss_conf             0221000210001221000121024785369995167652110111111-000000233--------------2110001


Q ss_pred             CCCCCCCEEEEEECCC----------CCEEEEEECCCCEEEEECCCCCCCE-EECCCCCCCC
Q ss_conf             1666432899999569----------9999999499919998468999840-2237888766
Q 002446          465 RGLTNAVIQDISFSDD----------SNWIMISSSRGTSHLFAINPLGGSV-NFQPTDANFT  515 (921)
Q Consensus       465 RG~t~a~I~sIaFSpD----------s~~LAsgS~DGTVhIwdi~~~g~~~-~l~~H~~~~~  515 (921)
                      .+ +...|.+++|+|+          +.+||+++.|++++||++...+... .+.+|...+.
T Consensus       202 ~~-h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~  262 (287)
T d1pgua2         202 AF-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN  262 (287)
T ss_dssp             CC-CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEE
T ss_pred             CC-CCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEE
T ss_conf             11-11111000001365410012678870276649995999888999758999278789858

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.4e-19  Score=126.71  Aligned_cols=220  Identities=13%  Similarity=0.179  Sum_probs=123.3

Q ss_pred             CEEEEEECCCCCEEEEEEC-CCCEEEEEECCCEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             6999997899919999938-9978999973989999-9199899998899947799961887558899998774456213
Q 002446          206 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA  283 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f-~S~V~sI~~S~riLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piA  283 (921)
                      ++|++||+.+++++++++. ...|.++.+++.+|+. +.++.+++|+................            .....
T Consensus        37 g~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~  104 (342)
T d2ovrb2          37 NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTST------------VRCMH  104 (342)
T ss_dssp             SCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC------------EEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCEECCCCCCEE------------EEEEE
T ss_conf             909999899997999994889998999947986321000001111111100000001233304------------76520


Q ss_pred             ECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44724896189840038986588655445455665689963000110000001011575177654212333234568986
Q 002446          284 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ  363 (921)
Q Consensus       284 lgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~  363 (921)
                      .....++.+..+..                           +..+.....+..    ..+..                ..
T Consensus       105 ~~~~~~~~~~~d~~---------------------------i~~~~~~~~~~~----~~~~~----------------~~  137 (342)
T d2ovrb2         105 LHEKRVVSGSRDAT---------------------------LRVWDIETGQCL----HVLMG----------------HV  137 (342)
T ss_dssp             EETTEEEEEETTSE---------------------------EEEEESSSCCEE----EEEEC----------------CS
T ss_pred             CCCCCCCCCCCCEE---------------------------EEEEECCCCCCE----EEEEC----------------CC
T ss_conf             24652212344403---------------------------787403556300----11100----------------11


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf             77443358998899546766566888779999899981688931489885899988999999999669978999958989
Q 002446          364 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       364 ~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~  443 (921)
                      .........       ...++.+..++.|++||......+..+.+|...+.++.+  +|.+|++++.||+ |++|++...
T Consensus       138 ~~~~~~~~~-------~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~-i~~~d~~~~  207 (342)
T d2ovrb2         138 AAVRCVQYD-------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETG  207 (342)
T ss_dssp             SCEEEEEEC-------SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTC
T ss_pred             CCCEEECCC-------CCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCC--CCCEEEEEECCCE-EEEEECCCC
T ss_conf             110000013-------330243358986999525234366787275444210068--9999999958993-999525565


Q ss_pred             CCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEECCCCC
Q ss_conf             988887667887315999974166643289999956999999994999199984689998402237888
Q 002446          444 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA  512 (921)
Q Consensus       444 ~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l~~H~~  512 (921)
                                    ..+..+ .++. ..+.+++|+  +++|++++.|+++++|++........+..|..
T Consensus       208 --------------~~~~~~-~~~~-~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  258 (342)
T d2ovrb2         208 --------------NCIHTL-TGHQ-SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNK  258 (342)
T ss_dssp             --------------CEEEEE-CCCC-SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTS
T ss_pred             --------------EEEEEE-CCCC-CCEEEEECC--CCEEEEECCCCEEEEEECCCCCCCCCCCCCCE
T ss_conf             --------------365674-1665-320577068--99999974898899986554422111221000

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1e-17  Score=117.19  Aligned_cols=40  Identities=10%  Similarity=0.082  Sum_probs=18.2

Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEECCCC
Q ss_conf             8999995699999999499919998468999840223788
Q 002446          472 IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD  511 (921)
Q Consensus       472 I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l~~H~  511 (921)
                      +.++.|+++++++++++.|+++++|++........+++|.
T Consensus       204 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~  243 (355)
T d1nexb2         204 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT  243 (355)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             CCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             2111111210021012456368763012211111111111

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=4.2e-18  Score=119.46  Aligned_cols=83  Identities=14%  Similarity=0.200  Sum_probs=43.9

Q ss_pred             CCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEE-----CCCCCCCEEEEEECCCCC
Q ss_conf             489885899988999999999669978999958989988887667887315999974-----166643289999956999
Q 002446          408 AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-----RGLTNAVIQDISFSDDSN  482 (921)
Q Consensus       408 aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~-----RG~t~a~I~sIaFSpDs~  482 (921)
                      .+...+.+++|+|+| +|||++.||+ |+|||+.++              ..++.+.     .++ ...|.+++|+||++
T Consensus       182 ~~~~~~~~v~~s~dg-~lasgs~Dg~-i~iwd~~~~--------------~~~~~~~~~~~l~~h-~~~V~~l~~spdg~  244 (393)
T d1sq9a_         182 TPSQFATSVDISERG-LIATGFNNGT-VQISELSTL--------------RPLYNFESQHSMINN-SNSIRSVKFSPQGS  244 (393)
T ss_dssp             SSCCCCCEEEECTTS-EEEEECTTSE-EEEEETTTT--------------EEEEEEECCC---CC-CCCEEEEEECSSTT
T ss_pred             CCCCCEEEEEECCCC-EEEEEECCCC-EEEEEECCC--------------CCCCCCCCCCCCCCC-CCEEEECCCCCCCC
T ss_conf             789867899978999-8999938982-999860233--------------211000011111242-56387700466532


Q ss_pred             EEEEEECCCC---EEEEECCCCCCCEEE
Q ss_conf             9999949991---999846899984022
Q 002446          483 WIMISSSRGT---SHLFAINPLGGSVNF  507 (921)
Q Consensus       483 ~LAsgS~DGT---VhIwdi~~~g~~~~l  507 (921)
                      +|++++.|++   ++||++........+
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l  272 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSL  272 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCCCCEEEECCCCCCEEEEEE
T ss_conf             0112428988421001035321344431

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.81  E-value=1.8e-16  Score=109.97  Aligned_cols=321  Identities=14%  Similarity=0.124  Sum_probs=157.4

Q ss_pred             EEEEEECCCC-EEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             5999981695-899971589981783343047889999920898774545743467888999928988677544578543
Q 002446          108 RVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT  186 (921)
Q Consensus       108 ~vLllG~~~G-fqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~rPLLavv~~g~~~g~~~~~Dg~~~  186 (921)
                      .+++...++| ++|||+++ +.+...+..++ .+..+.+.|+.              .+|++.+.          |    
T Consensus        33 ~~~V~~~~dg~v~vwD~~t-~~~~~~l~~g~-~~~~vafSPDG--------------k~l~~~~~----------d----   82 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDS-KKIVKVIDTGY-AVHISRMSASG--------------RYLLVIGR----------D----   82 (426)
T ss_dssp             EEEEEETTTTEEEEEETTT-CSEEEEEECCS-SEEEEEECTTS--------------CEEEEEET----------T----
T ss_pred             EEEEEECCCCEEEEEECCC-CCEEEEEECCC-CEEEEEECCCC--------------CEEEEEEC----------C----
T ss_conf             8999975999799999999-95999996899-80389998999--------------99999958----------9----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE--EEEECCCCEEEEEEC------CCEEEE--EECCEEEEEECCCCCE
Q ss_conf             348998876788999878969999978999199--999389978999973------989999--9199899998899947
Q 002446          187 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYV--HMLKFRSPIYSVRCS------SRVVAI--CQAAQVHCFDAATLEI  256 (921)
Q Consensus       187 ~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V--~tL~f~S~V~sI~~S------~riLAV--a~~~~I~IfDl~T~~~  256 (921)
                                         ++|++||+.+++..  ..++.......+.++      ++.+++  ..+..+.+||..+.++
T Consensus        83 -------------------~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~  143 (426)
T d1hzua2          83 -------------------ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  143 (426)
T ss_dssp             -------------------SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             -------------------CCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCE
T ss_conf             -------------------9889997568860489998678887645885002688987999635897699985776412


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCEEECC--CEEEECCCCCEEC--C--CCCC------CCCCC--C--CCCCCCC---
Q ss_conf             799961887558899998774456213447--2489618984003--8--9865------88655--4--4545566---
Q 002446          257 EYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVS--N--DGRV------NPQHL--M--QSRSFSG---  317 (921)
Q Consensus       257 l~tl~t~p~~~g~p~~~~~~~~~~piAlgp--RwLAyas~~~~~s--~--~Grv------sPq~l--~--~s~~~~~---  317 (921)
                      +..+..+......          ..+..++  .+++...+....+  .  .+.+      .+..+  .  +....+-   
T Consensus       144 ~~~~~~~~~~~~~----------~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (426)
T d1hzua2         144 KQIVSTRGMTVDT----------QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG  213 (426)
T ss_dssp             EEEEECCEECSSS----------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEE
T ss_pred             EEEEECCCCCCCC----------EEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCEEEE
T ss_conf             5786226777364----------364278850389987878788885278976999992466520457756677537613


Q ss_pred             CCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             568996300011000000101157517765421233323-4568986774433589988995467665668887799998
Q 002446          318 FASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS-EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRD  396 (921)
Q Consensus       318 ~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~-~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwD  396 (921)
                      ....+..+....... ..  ..+....+.   ++..... ...+.-........+.   .+.+  .......++.+.+|+
T Consensus       214 ~~~~g~~~~~a~~~~-~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~d~~v~~~~  282 (426)
T d1hzua2         214 WDSSHRYFMTAANNS-NK--VAVIDSKDR---RLSALVDVGKTPHPGRGANFVHPK---YGPV--WSTSHLGDGSISLIG  282 (426)
T ss_dssp             ECTTSCEEEEEETTC-SE--EEEEETTTT---EEEEEEECSSCCCCSCCEEEEETT---TEEE--EEEECTTTCEEEEEE
T ss_pred             ECCCCCEEEEEEECC-CC--EEEEECCCC---CEEEEECCCCCCCCCCEEEEECCC---CCCE--EEECCCCCCEEEEEE
T ss_conf             778886788642011-00--000002556---278875058744434201100698---7745--774157896598852


Q ss_pred             CCCC-------CEEEEECCCCCCEEEEEECCCCCEEEE-------EECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             9998-------168893148988589998899999999-------96699789999589899888876678873159999
Q 002446          397 IVSK-------NVIAQFRAHKSPISALCFDPSGILLVT-------ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR  462 (921)
Q Consensus       397 l~s~-------~~ia~l~aH~~pIsaLaFSPdGtlLAT-------aS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~  462 (921)
                      ....       +....+++|...+..++|+|||++|+.       ++.+++ |+|||+.++..           ...+..
T Consensus       283 ~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t-v~vwd~~t~~~-----------~~~~~~  350 (426)
T d1hzua2         283 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDA-----------KYQVLP  350 (426)
T ss_dssp             CCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC-EEEEETTCTTS-----------CCEEEC
T ss_pred             CCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCE-EEEEECCCCCC-----------CEEEEC
T ss_conf             256652033025868986688763678748998618885067988022887-99998987876-----------708950


Q ss_pred             EE----CCCCCCCEEEEEECCCCCEEEEE-----ECCCCEEEEECCCCCCCEEECCC
Q ss_conf             74----16664328999995699999999-----49991999846899984022378
Q 002446          463 LQ----RGLTNAVIQDISFSDDSNWIMIS-----SSRGTSHLFAINPLGGSVNFQPT  510 (921)
Q Consensus       463 L~----RG~t~a~I~sIaFSpDs~~LAsg-----S~DGTVhIwdi~~~g~~~~l~~H  510 (921)
                      ..    -+.....+..++|||||+++.++     +.+++|+|||..+......+.++
T Consensus       351 ~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~  407 (426)
T d1hzua2         351 IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  407 (426)
T ss_dssp             HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             CCHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCC
T ss_conf             211025677885189879999999999997248888982999999987389998789

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1e-16  Score=111.37  Aligned_cols=210  Identities=13%  Similarity=0.184  Sum_probs=131.0

Q ss_pred             CEEEEEECCCCCEEEEEEC-CCCEEEEEECCCEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             6999997899919999938-9978999973989999-9199899998899947799961887558899998774456213
Q 002446          206 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA  283 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f-~S~V~sI~~S~riLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piA  283 (921)
                      ++|++||+.+++++++++. ...|.+|.+++++|++ +.++.|++|++.+..............            ....
T Consensus        35 g~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~------------~~~~  102 (293)
T d1p22a2          35 NTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV------------LHLR  102 (293)
T ss_dssp             SCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE------------EEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCC
T ss_conf             9399999999919999926778776342363002100111011000002464100111111000------------0111


Q ss_pred             ECCCEEEECCCC--CEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             447248961898--400389865886554454556656899630001100000010115751776542123332345689
Q 002446          284 VGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD  361 (921)
Q Consensus       284 lgpRwLAyas~~--~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~  361 (921)
                      .....++.....  ...+....                             .+... ....+                ..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~-~~~~~----------------~~  136 (293)
T d1p22a2         103 FNNGMMVTCSKDRSIAVWDMAS-----------------------------PTDIT-LRRVL----------------VG  136 (293)
T ss_dssp             CCTTEEEEEETTSCEEEEECSS-----------------------------SSCCE-EEEEE----------------CC
T ss_pred             CCCCCEEECCCCCCEEEEECCC-----------------------------CCCCC-CCCCC----------------CC
T ss_conf             1110000013566306861344-----------------------------54442-12100----------------01


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECC
Q ss_conf             86774433589988995467665668887799998999816889314898858999889999999996699789999589
Q 002446          362 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII  441 (921)
Q Consensus       362 ~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~  441 (921)
                      ....+......       .........++.|++||+.+.+++..+.+|..+|..+.++  +.+|++++.||+ |++||+.
T Consensus       137 ~~~~v~~~~~~-------~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~  206 (293)
T d1p22a2         137 HRAAVNVVDFD-------DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIE  206 (293)
T ss_dssp             CSSCEEEEEEE-------TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETT
T ss_pred             CCCCCCCCEEC-------CCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCCE-EEEEECC
T ss_conf             13543110000-------0220110699860410078883889971554453221689--875887658998-9998665


Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             899888876678873159999741666432899999569999999949991999846899
Q 002446          442 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       442 ~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~  501 (921)
                      +.              ..+..+ .++.. .|.  ++++++.+|++++.||+++||++...
T Consensus       207 ~~--------------~~~~~~-~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         207 CG--------------ACLRVL-EGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             TC--------------CEEEEE-CCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             CC--------------EEEEEE-CCCCE-EEE--ECCCCCEEEEEECCCCEEEEEECCCC
T ss_conf             56--------------146652-14310-000--01454107999867997999988888

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=6.7e-17  Score=112.48  Aligned_cols=270  Identities=13%  Similarity=0.098  Sum_probs=146.5

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             17833430478899999208987745457434678889999289886775445785433489988767889998789699
Q 002446          129 VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV  208 (921)
Q Consensus       129 ~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tV  208 (921)
                      ..++...|+..|+.+++.|+              .++||.++.          |                       ++|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~--------------~~~L~s~s~----------D-----------------------g~v   35 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPS--------------KSLLLITSW----------D-----------------------GSL   35 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGG--------------GTEEEEEET----------T-----------------------SEE
T ss_pred             EEECCCCCCCCEEEEEEECC--------------CCEEEEEEC----------C-----------------------CEE
T ss_conf             59768899897888999589--------------999999979----------9-----------------------929


Q ss_pred             EEEECCCCC----EEEEEECCCCEEEEEEC---CCEEEE-EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             999789991----99999389978999973---989999-9199899998899947799961887558899998774456
Q 002446          209 HFYSLRSQS----YVHMLKFRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG  280 (921)
Q Consensus       209 riWDLkTg~----~V~tL~f~S~V~sI~~S---~riLAV-a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~  280 (921)
                      ++||+.++.    +...+.+..+|.+++|+   +.+|++ +.++.|++|+..................         ...
T Consensus        36 ~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~---------~~~  106 (342)
T d1yfqa_          36 TVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLG---------ICR  106 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSC---------EEE
T ss_pred             EEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCC---------CCC
T ss_conf             99975699863689885589998899999589997899812653114542044320000011111111---------111


Q ss_pred             CEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             21344724896189840038986588655445455665689963000110000001011575177654212333234568
Q 002446          281 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP  360 (921)
Q Consensus       281 piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p  360 (921)
                      ....+...++..+..                           ..+..+.....+............. ..          
T Consensus       107 ~~~~~~~~~~~~~~~---------------------------~~~~~wd~~~~~~~~~~~~~~~~~~-~~----------  148 (342)
T d1yfqa_         107 ICKYGDDKLIAASWD---------------------------GLIEVIDPRNYGDGVIAVKNLNSNN-TK----------  148 (342)
T ss_dssp             EEEETTTEEEEEETT---------------------------SEEEEECHHHHTTBCEEEEESCSSS-SS----------
T ss_pred             CCCCCCCCCCCCCCC---------------------------CCCCEEECCCCCCCEEEECCCCCCC-CC----------
T ss_conf             111111111110122---------------------------2111020234443302300024300-12----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE---EEECCCCCCEEEEE-ECCCCCEEEEEECCCCEEE
Q ss_conf             9867744335899889954676656688877999989998168---89314898858999-8899999999966997899
Q 002446          361 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI---AQFRAHKSPISALC-FDPSGILLVTASVQGHNIN  436 (921)
Q Consensus       361 ~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~i---a~l~aH~~pIsaLa-FSPdGtlLATaS~dGt~Ir  436 (921)
                       ...........       ...++.+..+|.|++||+......   .....+...+.+.+ +..++..+++++.+|. +.
T Consensus       149 -~~~~~~~~~~~-------~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~  219 (342)
T d1yfqa_         149 -VKNKIFTMDTN-------SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VA  219 (342)
T ss_dssp             -SCCCEEEEEEC-------SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EE
T ss_pred             -CEEEEEEEECC-------CCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCE-EE
T ss_conf             -00000100016-------8702465179847887605676341112102542210146763699987886548995-99


Q ss_pred             EEECCCCCCCCCCCCCCCCCEEEEEEEECC-----CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEE
Q ss_conf             995898998888766788731599997416-----66432899999569999999949991999846899984022
Q 002446          437 IFKIIPGILGTSSACDAGTSYVHLYRLQRG-----LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF  507 (921)
Q Consensus       437 Iwdi~~~~~~~~s~~~~~~~~~~l~~L~RG-----~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l  507 (921)
                      +|+..........      .........+.     .+...|.+|+|+|++++||+++.||+|+|||+........+
T Consensus       220 v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         220 VEFFDDQGDDYNS------SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             EEECCTTCCSTTC------TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             EEEECCCCCEEEC------CCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf             9980598640111------235125655531477762354315996698447999879998999999989498870

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=3.8e-15  Score=102.22  Aligned_cols=103  Identities=10%  Similarity=0.100  Sum_probs=81.2

Q ss_pred             CCCCEEEEEECCCCCEEE-EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf             888779999899981688-9314898858999889999999996699789999589899888876678873159999741
Q 002446          387 DNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR  465 (921)
Q Consensus       387 ~~~G~V~IwDl~s~~~ia-~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~R  465 (921)
                      ...+.+.+||..++.... .+..|...+.+++++|++.+++.++  ++ |++||+.++              ..+.++.-
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-i~v~d~~~~--------------~~~~~~~~  278 (337)
T d1pbyb_         216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY--NV-LESFDLEKN--------------ASIKRVPL  278 (337)
T ss_dssp             GEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE--SE-EEEEETTTT--------------EEEEEEEC
T ss_pred             CCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEECC--CC-EEEEECCCC--------------CEEEEECC
T ss_conf             36761799986888588898328875058887426613999735--52-899989889--------------69999748


Q ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEECC
Q ss_conf             66643289999956999999994999199984689998402237
Q 002446          466 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP  509 (921)
Q Consensus       466 G~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l~~  509 (921)
                      +   ..+.+++||||+++|++++.++++.|||..+......++.
T Consensus       279 ~---~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         279 P---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             S---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             C---CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf             9---9889999978999999994999299999998769899988

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.74  E-value=3.5e-13  Score=90.76  Aligned_cols=268  Identities=13%  Similarity=0.107  Sum_probs=151.4

Q ss_pred             EEEC-CCCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             9981-695899971589981783343047889999920898774545743467888999928988677544578543348
Q 002446          111 LLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACN  189 (921)
Q Consensus       111 llG~-~~GfqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~  189 (921)
                      +.+. ++.+.|||+++ +++...+... +.+..+.+.|+              ...|++++..         +       
T Consensus         6 V~~~~~~~v~v~D~~t-~~~~~~i~~g-~~p~~va~spd--------------G~~l~v~~~~---------~-------   53 (301)
T d1l0qa2           6 IANSESDNISVIDVTS-NKVTATIPVG-SNPMGAVISPD--------------GTKVYVANAH---------S-------   53 (301)
T ss_dssp             EEETTTTEEEEEETTT-TEEEEEEECS-SSEEEEEECTT--------------SSEEEEEEGG---------G-------
T ss_pred             EEECCCCEEEEEECCC-CEEEEEEECC-CCCEEEEEECC--------------CCEEEEEECC---------C-------
T ss_conf             9978999899999999-9599999889-98369999289--------------8999999789---------9-------


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEC--CCEEEEE--ECCEEEEEECCCCCEEEEEECCCC
Q ss_conf             998876788999878969999978999199999389978999973--9899999--199899998899947799961887
Q 002446          190 GTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILTNPI  265 (921)
Q Consensus       190 g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f~S~V~sI~~S--~riLAVa--~~~~I~IfDl~T~~~l~tl~t~p~  265 (921)
                                      +.|++||+.+++.++++.....+..+.++  ++.++++  .+..+.+||..+.+....+.....
T Consensus        54 ----------------~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (301)
T d1l0qa2          54 ----------------NDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS  117 (301)
T ss_dssp             ----------------TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             ----------------CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCC
T ss_conf             ----------------9899999998941032000246431100011111111111110011001243024320244444


Q ss_pred             CCCCCCCCCCCCCCCCEEECC--CEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEEC
Q ss_conf             558899998774456213447--248961898400389865886554454556656899630001100000010115751
Q 002446          266 VMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL  343 (921)
Q Consensus       266 ~~g~p~~~~~~~~~~piAlgp--RwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~l  343 (921)
                      +             ..+++++  +++..+...                          +..+..+.....+.    +..+
T Consensus       118 ~-------------~~~~~~~dg~~~~~~~~~--------------------------~~~~~~~~~~~~~~----~~~~  154 (301)
T d1l0qa2         118 P-------------LGLALSPDGKKLYVTNNG--------------------------DKTVSVINTVTKAV----INTV  154 (301)
T ss_dssp             E-------------EEEEECTTSSEEEEEETT--------------------------TTEEEEEETTTTEE----EEEE
T ss_pred             C-------------EEEEEECCCCEEEEEECC--------------------------CCCEEEEECCCCCE----EEEC
T ss_conf             2-------------378760589715542011--------------------------11001100014630----3531


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCC
Q ss_conf             77654212333234568986774433589988995467665668887799998999816889314898858999889999
Q 002446          344 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI  423 (921)
Q Consensus       344 Gd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGt  423 (921)
                      ....    ........|++.                 ..+......+.+.+|+.........+..+. ....++|+++|.
T Consensus       155 ~~~~----~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~  212 (301)
T d1l0qa2         155 SVGR----SPKGIAVTPDGT-----------------KVYVANFDSMSISVIDTVTNSVIDTVKVEA-APSGIAVNPEGT  212 (301)
T ss_dssp             ECCS----SEEEEEECTTSS-----------------EEEEEETTTTEEEEEETTTTEEEEEEECSS-EEEEEEECTTSS
T ss_pred             CCCC----CCEEEEEECCCC-----------------CEEEECCCCCCCCCCCCCCEEEEECCCCCC-CCCEEECCCCCC
T ss_conf             5678----842888604654-----------------013101211111111111000111013357-750311011110


Q ss_pred             EEEEEECCC--CEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCC
Q ss_conf             999996699--7899995898998888766788731599997416664328999995699999-9994999199984689
Q 002446          424 LLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWI-MISSSRGTSHLFAINP  500 (921)
Q Consensus       424 lLATaS~dG--t~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~L-AsgS~DGTVhIwdi~~  500 (921)
                      .++.+..++  ..|.+||+.++              ..+..+.-+   ..+.+++||||+++| ++++.+++|+|||+.+
T Consensus       213 ~~~v~~~~~~~~~v~v~D~~t~--------------~~~~~~~~~---~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         213 KAYVTNVDKYFNTVSMIDTGTN--------------KITARIPVG---PDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             EEEEEEECSSCCEEEEEETTTT--------------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCCCCCCCCEEEEEEEEECCCC--------------EEEEEECCC---CCEEEEEEECCCCEEEEEECCCCEEEEEECCC
T ss_conf             1111002100002323656998--------------199998489---98779999189899999989999699999999


Q ss_pred             CCCCEEEC
Q ss_conf             99840223
Q 002446          501 LGGSVNFQ  508 (921)
Q Consensus       501 ~g~~~~l~  508 (921)
                      ......+.
T Consensus       276 ~~~~~~~~  283 (301)
T d1l0qa2         276 NTITATMA  283 (301)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEE
T ss_conf             95999996

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.74  E-value=1.4e-14  Score=98.98  Aligned_cols=111  Identities=9%  Similarity=0.076  Sum_probs=85.6

Q ss_pred             CCCCCEEEEEECCCCCEEEE-ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             68887799998999816889-31489885899988999999999669978999958989988887667887315999974
Q 002446          386 ADNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ  464 (921)
Q Consensus       386 ~~~~G~V~IwDl~s~~~ia~-l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~  464 (921)
                      ....+.+.+||+.++..... +..|...+..+.+++++.+++....+ . |.+||..++              ..+..+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-v~v~d~~~~--------------~~~~~~~  289 (346)
T d1jmxb_         226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-R-LAKYDLKQR--------------KLIKAAN  289 (346)
T ss_dssp             CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEES-E-EEEEETTTT--------------EEEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCC-E-EEEEECCCC--------------CEEEEEC
T ss_conf             04783499997778836878763156606888971799789994298-3-899989999--------------3999974


Q ss_pred             CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCCC
Q ss_conf             166643289999956999999994999199984689998402237888766
Q 002446          465 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT  515 (921)
Q Consensus       465 RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~~l~~H~~~~~  515 (921)
                      .+   ..+.+++||||+++|++++.|++|+|||+.+......++...++..
T Consensus       290 ~~---~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~~~  337 (346)
T d1jmxb_         290 LD---HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMS  337 (346)
T ss_dssp             CS---SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSCCB
T ss_pred             CC---CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCC
T ss_conf             99---9778999968999999994899299999965879799988999855

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.70  E-value=1.6e-14  Score=98.62  Aligned_cols=190  Identities=11%  Similarity=0.058  Sum_probs=108.9

Q ss_pred             EEEEEECCCCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             59999816958999715899817833430478899999208987745457434678889999289886775445785433
Q 002446          108 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA  187 (921)
Q Consensus       108 ~vLllG~~~GfqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~rPLLavv~~g~~~g~~~~~Dg~~~~  187 (921)
                      +.++.+..+.+.|||++. +.+.++  .|.+.|+++.+.|+.              ..|++++...              
T Consensus        16 ~~~a~~~~g~v~v~d~~~-~~~~~~--~~~~~v~~~~~spDg--------------~~l~~~~~~~--------------   64 (360)
T d1k32a3          16 DLIAFVSRGQAFIQDVSG-TYVLKV--PEPLRIRYVRRGGDT--------------KVAFIHGTRE--------------   64 (360)
T ss_dssp             GCEEEEETTEEEEECTTS-SBEEEC--SCCSCEEEEEECSSS--------------EEEEEEEETT--------------
T ss_pred             CEEEEEECCEEEEEECCC-CCEEEC--CCCCCEEEEEECCCC--------------CEEEEEECCC--------------
T ss_conf             999999899699998999-948991--699988889998999--------------9999999289--------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEC--CCEEEE-EECCEEEEEECCCCCEEEEEECCC
Q ss_conf             48998876788999878969999978999199999389978999973--989999-919989999889994779996188
Q 002446          188 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNP  264 (921)
Q Consensus       188 ~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f~S~V~sI~~S--~riLAV-a~~~~I~IfDl~T~~~l~tl~t~p  264 (921)
                                       ...|++||+.+++..........|..+.++  ++.|+. ..+..+++|++.+.+....+..+.
T Consensus        65 -----------------g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (360)
T d1k32a3          65 -----------------GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE  127 (360)
T ss_dssp             -----------------EEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             -----------------CCEEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCC
T ss_conf             -----------------989999989999488750897127741211454321000111110000012221000000135


Q ss_pred             CCCCCCCCCCCCCCCCCEEECC--CEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEE
Q ss_conf             7558899998774456213447--24896189840038986588655445455665689963000110000001011575
Q 002446          265 IVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN  342 (921)
Q Consensus       265 ~~~g~p~~~~~~~~~~piAlgp--RwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~  342 (921)
                      ..            ...++++|  ++|||+....                                              
T Consensus       128 ~~------------~~~~~~spdg~~la~~~~~~----------------------------------------------  149 (360)
T d1k32a3         128 AM------------ITDFTISDNSRFIAYGFPLK----------------------------------------------  149 (360)
T ss_dssp             SC------------CCCEEECTTSCEEEEEEEEC----------------------------------------------
T ss_pred             CC------------CCCHHHCCCEEEEEEECCCC----------------------------------------------
T ss_conf             52------------02301213225665212331----------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCC
Q ss_conf             17765421233323456898677443358998899546766566888779999899981688931489885899988999
Q 002446          343 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG  422 (921)
Q Consensus       343 lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdG  422 (921)
                                                            .........+.+++||+.+++.. .+..|...+..++|+|||
T Consensus       150 --------------------------------------~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg  190 (360)
T d1k32a3         150 --------------------------------------HGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADS  190 (360)
T ss_dssp             --------------------------------------SSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTS
T ss_pred             --------------------------------------CCCEEECCCCCEEEECCCCCCEE-EECCCCCCCCCCCCCCCC
T ss_conf             --------------------------------------21100025654266304557135-303543221100125779


Q ss_pred             CEEEEEECCCCEEEEEECCCC
Q ss_conf             999999669978999958989
Q 002446          423 ILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       423 tlLATaS~dGt~IrIwdi~~~  443 (921)
                      ++|++++.++. +++|+....
T Consensus       191 ~~l~~~s~~~~-~~~~d~~~~  210 (360)
T d1k32a3         191 KNLYYLSYRSL-DPSPDRVVL  210 (360)
T ss_dssp             CEEEEEESCCC-CCEECSSSS
T ss_pred             CEEEEEECCCC-EECCCCCCC
T ss_conf             99999959985-575333544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=2.1e-13  Score=92.14  Aligned_cols=181  Identities=9%  Similarity=0.029  Sum_probs=109.5

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEEEC--CCEEEE-EECCEEEEEECCCCCEE--EEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             69999978999199999389978999973--989999-91998999988999477--99961887558899998774456
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE--YAILTNPIVMGHPSAGGIGIGYG  280 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f~S~V~sI~~S--~riLAV-a~~~~I~IfDl~T~~~l--~tl~t~p~~~g~p~~~~~~~~~~  280 (921)
                      ++|.|||++++++++.+.....+..++|+  ++++++ ..++.|.+||+.+.+..  ..+....                
T Consensus        42 g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~----------------  105 (432)
T d1qksa2          42 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS----------------  105 (432)
T ss_dssp             TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS----------------
T ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCC----------------
T ss_conf             9799998999839999737997137998899999999828999789981089812889984488----------------


Q ss_pred             CEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             21344724896189840038986588655445455665689963000110000001011575177654212333234568
Q 002446          281 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP  360 (921)
Q Consensus       281 piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p  360 (921)
                          +++-++++.                    .|+   ..|+.           +                        
T Consensus       106 ----~~~~~~~s~--------------------~~S---pDG~~-----------l------------------------  123 (432)
T d1qksa2         106 ----EARSIETSK--------------------MEG---WEDKY-----------A------------------------  123 (432)
T ss_dssp             ----EEEEEEECC--------------------STT---CTTTE-----------E------------------------
T ss_pred             ----CCCCEEEEC--------------------CCC---CCCCE-----------E------------------------
T ss_conf             ----987769843--------------------218---88888-----------9------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-----------CCCEEEEEECCCCCEEEE-E
Q ss_conf             9867744335899889954676656688877999989998168893148-----------988589998899999999-9
Q 002446          361 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH-----------KSPISALCFDPSGILLVT-A  428 (921)
Q Consensus       361 ~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~ia~l~aH-----------~~pIsaLaFSPdGtlLAT-a  428 (921)
                                            ++....++.|.|||..+++++..+..|           .....++.|+|+|+.++. .
T Consensus       124 ----------------------~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~  181 (432)
T d1qksa2         124 ----------------------IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  181 (432)
T ss_dssp             ----------------------EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             ----------------------EEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEE
T ss_conf             ----------------------9981789827999076554225402477643522016888505899878999899998


Q ss_pred             ECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCC
Q ss_conf             6699789999589899888876678873159999741666432899999569999999949-9919998468999
Q 002446          429 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLG  502 (921)
Q Consensus       429 S~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS~-DGTVhIwdi~~~g  502 (921)
                      +.++ .|.+|+..+.            ....+.++.   +...+.+++|+||++++++++. +.++.+++.....
T Consensus       182 ~~~~-~i~~~d~~~~------------~~~~~~~i~---~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         182 KETG-KILLVDYTDL------------NNLKTTEIS---AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             TTTT-EEEEEETTCS------------SEEEEEEEE---CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCCC-EEEEEECCCC------------CCCEEEEEC---CCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCE
T ss_conf             1688-2999984378------------752279983---367542653889887999951666367776144526

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.65  E-value=2.5e-11  Score=80.03  Aligned_cols=58  Identities=14%  Similarity=0.118  Sum_probs=37.4

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEEEC--CCEEEEE--ECCEEEEEECCCCCEEEEEECC
Q ss_conf             69999978999199999389978999973--9899999--1998999988999477999618
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILTN  263 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f~S~V~sI~~S--~riLAVa--~~~~I~IfDl~T~~~l~tl~t~  263 (921)
                      ++|.+||+.+++.++++++...+..+.++  ++.|+|+  .+++|.+||+.+.+.+.++..+
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~   73 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG   73 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf             98999999999599999889983699992898999999789998999999989410320002

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.64  E-value=2.1e-15  Score=103.79  Aligned_cols=55  Identities=15%  Similarity=0.115  Sum_probs=46.9

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEEEC--CCEEEE-EECCEEEEEECCCCCEEEEE
Q ss_conf             69999978999199999389978999973--989999-91998999988999477999
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAI  260 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f~S~V~sI~~S--~riLAV-a~~~~I~IfDl~T~~~l~tl  260 (921)
                      ++|++||+.+++++++|+....+..|.|+  ++++++ ..++.|.+||+.+.+.....
T Consensus        42 g~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~   99 (426)
T d1hzua2          42 GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA   99 (426)
T ss_dssp             TEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE
T ss_conf             9799999999959999968998038999899999999958998899975688604899

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=3e-15  Score=102.86  Aligned_cols=239  Identities=14%  Similarity=0.081  Sum_probs=143.2

Q ss_pred             EEEEEECCCC-EEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             5999981695-899971589981783343047889999920898774545743467888999928988677544578543
Q 002446          108 RVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT  186 (921)
Q Consensus       108 ~vLllG~~~G-fqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~rPLLavv~~g~~~g~~~~~Dg~~~  186 (921)
                      .+++.-.+.| +.|||.++ +++...+..+. .|..+++.|+-              .+|++++.          |    
T Consensus        33 ~~~v~~~d~g~v~v~D~~t-~~v~~~~~~g~-~~~~v~fSpDG--------------~~l~~~s~----------d----   82 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGST-YEIKTVLDTGY-AVHISRLSASG--------------RYLFVIGR----------D----   82 (432)
T ss_dssp             EEEEEETTTTEEEEEETTT-CCEEEEEECSS-CEEEEEECTTS--------------CEEEEEET----------T----
T ss_pred             EEEEEECCCCEEEEEECCC-CCEEEEEECCC-CEEEEEECCCC--------------CEEEEECC----------C----
T ss_conf             8999976999799998999-83999973799-71379988999--------------99999828----------9----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEECCCCC--EEEEEECCCCEEEEEEC------CCEEEE--EECCEEEEEECCCCCE
Q ss_conf             3489988767889998789699999789991--99999389978999973------989999--9199899998899947
Q 002446          187 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLKFRSPIYSVRCS------SRVVAI--CQAAQVHCFDAATLEI  256 (921)
Q Consensus       187 ~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~--~V~tL~f~S~V~sI~~S------~riLAV--a~~~~I~IfDl~T~~~  256 (921)
                                         ++|++||+.+++  .+.+++-......+.++      ++.|+|  ..++.|.+||+.+++.
T Consensus        83 -------------------g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~  143 (432)
T d1qksa2          83 -------------------GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP  143 (432)
T ss_dssp             -------------------SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             -------------------CCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCC
T ss_conf             -------------------9978998108981288998448898776984321888888999817898279990765542


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHH
Q ss_conf             79996188755889999877445621344724896189840038986588655445455665689963000110000001
Q 002446          257 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL  336 (921)
Q Consensus       257 l~tl~t~p~~~g~p~~~~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~l  336 (921)
                      +.++..+....          ....+...++.+|...                                           
T Consensus       144 ~~~~~~~~~~~----------~~~~~~~~~~~~~v~~-------------------------------------------  170 (432)
T d1qksa2         144 KKIQSTRGMTY----------DEQEYHPEPRVAAILA-------------------------------------------  170 (432)
T ss_dssp             EEEEECCEECT----------TTCCEESCCCEEEEEE-------------------------------------------
T ss_pred             EEEECCCCCCC----------CCEECCCCCCEEEEEE-------------------------------------------
T ss_conf             25402477643----------5220168885058998-------------------------------------------


Q ss_pred             CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC-CCCCCEEE
Q ss_conf             01157517765421233323456898677443358998899546766566888779999899981688931-48988589
Q 002446          337 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISA  415 (921)
Q Consensus       337 asGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~ia~l~-aH~~pIsa  415 (921)
                                            .|++..                 .+......+.|.+||....+...... .+......
T Consensus       171 ----------------------s~dg~~-----------------~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~  211 (432)
T d1qksa2         171 ----------------------SHYRPE-----------------FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHD  211 (432)
T ss_dssp             ----------------------CSSSSE-----------------EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEE
T ss_pred             ----------------------CCCCCE-----------------EEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCC
T ss_conf             ----------------------789998-----------------99998168829999843787522799833675426


Q ss_pred             EEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECC---CCCCCEEEEEECCCCCEEEEEEC-CC
Q ss_conf             998899999999966997899995898998888766788731599997416---66432899999569999999949-99
Q 002446          416 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG---LTNAVIQDISFSDDSNWIMISSS-RG  491 (921)
Q Consensus       416 LaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG---~t~a~I~sIaFSpDs~~LAsgS~-DG  491 (921)
                      ++|+|||++|++++.++..+.+++....              ..+.....|   .+........+...+...++... ++
T Consensus       212 ~~~spdg~~~~va~~~~~~v~v~d~~~~--------------~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~  277 (432)
T d1qksa2         212 GGLDGSHRYFITAANARNKLVVIDTKEG--------------KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD  277 (432)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEETTTT--------------EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred             CEECCCCCEEEEECCCCCEEEEEECCCC--------------EEEEEECCCCCCCCCCCCCCEECCCCCCEECCCCCCCC
T ss_conf             5388988799995166636777614452--------------68887214862245676641014898831021356883


Q ss_pred             CEEEEECCCC
Q ss_conf             1999846899
Q 002446          492 TSHLFAINPL  501 (921)
Q Consensus       492 TVhIwdi~~~  501 (921)
                      ++.+|...+.
T Consensus       278 ~v~~~~~~~~  287 (432)
T d1qksa2         278 SVALIGTDPE  287 (432)
T ss_dssp             EEEEEECCTT
T ss_pred             EEEECCCCCC
T ss_conf             5876245665

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=7.2e-11  Score=77.31  Aligned_cols=284  Identities=12%  Similarity=0.112  Sum_probs=137.7

Q ss_pred             CEEEEEEC-CCCEEEEECCCCCCEEEEEE--EECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             85999981-69589997158998178334--3047889999920898774545743467888999928988677544578
Q 002446          107 RRVLLLGY-RSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG  183 (921)
Q Consensus       107 ~~vLllG~-~~GfqVWDi~~~g~~~eivS--~~dGpVr~i~ilP~P~~~~~~~d~F~~~rPLLavv~~g~~~g~~~~~Dg  183 (921)
                      +.+++.+. ++.++||+++..+.. +++.  .+.+.|..+.+.|+              ...|.++...           
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~l-~~~~~~~~~~~v~~la~spD--------------G~~L~v~~~~-----------   57 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGAL-TLTQVVDVPGQVQPMVVSPD--------------KRYLYVGVRP-----------   57 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCE-EEEEEEECSSCCCCEEECTT--------------SSEEEEEETT-----------
T ss_pred             EEEEEECCCCCCEEEEEECCCCCE-EEEEEECCCCCEEEEEEECC--------------CCEEEEEECC-----------
T ss_conf             599998789993899998399976-99999757998868999589--------------7999999778-----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC----EEEEEECCCCEEEEEEC--CCEEEEEE--CCEEEEEECCCCC
Q ss_conf             5433489988767889998789699999789991----99999389978999973--98999991--9989999889994
Q 002446          184 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS----YVHMLKFRSPIYSVRCS--SRVVAICQ--AAQVHCFDAATLE  255 (921)
Q Consensus       184 ~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~----~V~tL~f~S~V~sI~~S--~riLAVa~--~~~I~IfDl~T~~  255 (921)
                                           +..|++|++....    .+........+..+.++  ++.|+++.  +..|.+|+.....
T Consensus        58 ---------------------d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~  116 (333)
T d1ri6a_          58 ---------------------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL  116 (333)
T ss_dssp             ---------------------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred             ---------------------CCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCEEEECCCCCC
T ss_conf             ---------------------99699999968987079853013699854999959998874205688830220011100


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCEEECC--CEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCC
Q ss_conf             7799961887558899998774456213447--24896189840038986588655445455665689963000110000
Q 002446          256 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS  333 (921)
Q Consensus       256 ~l~tl~t~p~~~g~p~~~~~~~~~~piAlgp--RwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~s  333 (921)
                      ............ .         ...+++++  +++.......                          ..+..+.....
T Consensus       117 ~~~~~~~~~~~~-~---------~~~v~~s~d~~~~~~~~~~~--------------------------~~i~~~~~~~~  160 (333)
T d1ri6a_         117 PVGVVDVVEGLD-G---------CHSANISPDNRTLWVPALKQ--------------------------DRICLFTVSDD  160 (333)
T ss_dssp             EEEEEEEECCCT-T---------BCCCEECTTSSEEEEEEGGG--------------------------TEEEEEEECTT
T ss_pred             CEECCCCCCCCC-C---------CEEEEEEECCEEEECCCCCC--------------------------CEEEEEEECCC
T ss_conf             000010037785-3---------14988630101310256554--------------------------20568973268


Q ss_pred             HHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC----EEEEEC--
Q ss_conf             00101157517765421233323456898677443358998899546766566888779999899981----688931--
Q 002446          334 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFR--  407 (921)
Q Consensus       334 K~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~----~ia~l~--  407 (921)
                      ..........             ...+.+...-..+....   +  ...+......+...+++.....    ....+.  
T Consensus       161 ~~~~~~~~~~-------------~~~~~g~~p~~i~~~~~---~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  222 (333)
T d1ri6a_         161 GHLVAQDPAE-------------VTTVEGAGPRHMVFHPN---E--QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM  222 (333)
T ss_dssp             SCEEEEEEEE-------------EECSTTCCEEEEEECTT---S--SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             CCCEEEECEE-------------EEEECCCCCCEEEEECC---C--EEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEE
T ss_conf             7410010001-------------33403887527999602---0--1478620466721788510355520210022343


Q ss_pred             ----CCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCE
Q ss_conf             ----4898858999889999999996699789999589899888876678873159999741666432899999569999
Q 002446          408 ----AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW  483 (921)
Q Consensus       408 ----aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~  483 (921)
                          ........++|++||+++..+......+.+|++....           ....+....  .+...+.+++|||||++
T Consensus       223 ~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~p~~~a~spDGk~  289 (333)
T d1ri6a_         223 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG-----------SVLSKEGFQ--PTETQPRGFNVDHSGKY  289 (333)
T ss_dssp             CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----------CCEEEEEEE--ECSSSCCCEEECTTSSE
T ss_pred             ECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCC-----------CEEEEEEEE--CCCCCEEEEEEECCCCE
T ss_conf             06877655312689951567205504568827878873999-----------789999996--78997628999079899


Q ss_pred             EEEEE-CCCCEEEEECCCCCCC
Q ss_conf             99994-9991999846899984
Q 002446          484 IMISS-SRGTSHLFAINPLGGS  504 (921)
Q Consensus       484 LAsgS-~DGTVhIwdi~~~g~~  504 (921)
                      |+++. .+++|.||++....+.
T Consensus       290 l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         290 LIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             EEEECTTTCEEEEEEEETTTTE
T ss_pred             EEEEECCCCEEEEEEEECCCCC
T ss_conf             9999889993999999799996

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.51  E-value=5.8e-10  Score=72.03  Aligned_cols=108  Identities=12%  Similarity=0.102  Sum_probs=67.0

Q ss_pred             CCCCEEEEEECCCCCEE--EEECCC----------CCCEEEEEECCCCCEEEEEE----------CCCCEEEEEECCCCC
Q ss_conf             88877999989998168--893148----------98858999889999999996----------699789999589899
Q 002446          387 DNVGMVIVRDIVSKNVI--AQFRAH----------KSPISALCFDPSGILLVTAS----------VQGHNINIFKIIPGI  444 (921)
Q Consensus       387 ~~~G~V~IwDl~s~~~i--a~l~aH----------~~pIsaLaFSPdGtlLATaS----------~dGt~IrIwdi~~~~  444 (921)
                      ..++.+.+|+.......  ..+..+          ......++++|+|..++...          .++ .+.+||+.++ 
T Consensus       231 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~v~~~d~~t~-  308 (373)
T d2madh_         231 VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK-EVTSVTGLVG-  308 (373)
T ss_pred             CCCCEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC-EEEEEECCCC-
T ss_conf             58965999976899078977630564757866413674133577149975999548882478625898-6999989999-


Q ss_pred             CCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCE--EEEEECCCCEEEEECCCCCCCEEECCCCC
Q ss_conf             888876678873159999741666432899999569999--99994999199984689998402237888
Q 002446          445 LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW--IMISSSRGTSHLFAINPLGGSVNFQPTDA  512 (921)
Q Consensus       445 ~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~--LAsgS~DGTVhIwdi~~~g~~~~l~~H~~  512 (921)
                                   ..+..+..+   ..+.+++||||+++  +++++.|++++|||+.+......+..|..
T Consensus       309 -------------~~~~~~~~~---~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~  362 (373)
T d2madh_         309 -------------QTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS  362 (373)
T ss_pred             -------------CEEEEECCC---CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCC
T ss_conf             -------------698986689---982589999899989999967999299999999989999888898

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=8.4e-10  Score=71.08  Aligned_cols=227  Identities=10%  Similarity=0.025  Sum_probs=122.5

Q ss_pred             CEEEEEECCCCCEEEEEECCC--------CEEEEEEC--CCEEEEE---ECCEEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf             699999789991999993899--------78999973--9899999---1998999988999477999618875588999
Q 002446          206 TVVHFYSLRSQSYVHMLKFRS--------PIYSVRCS--SRVVAIC---QAAQVHCFDAATLEIEYAILTNPIVMGHPSA  272 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f~S--------~V~sI~~S--~riLAVa---~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~  272 (921)
                      ..|++||+.+++.+..+..+.        ....+.++  ++.+.++   .+..+.+||..+.+...++.......     
T Consensus        78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  152 (355)
T d2bbkh_          78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH-----  152 (355)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE-----
T ss_pred             CEEEEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCE-----
T ss_conf             989999999997988980588640311798734999338871577327988204543057883766770587404-----


Q ss_pred             CCCCCCCCCEEEC-CCEEEECCCCCE-E-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCC
Q ss_conf             9877445621344-724896189840-0-389865886554454556656899630001100000010115751776542
Q 002446          273 GGIGIGYGPLAVG-PRWLAYSGSPVV-V-SNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK  349 (921)
Q Consensus       273 ~~~~~~~~piAlg-pRwLAyas~~~~-~-s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~  349 (921)
                              ..+.+ ...++++.+... . ....                   ...+......           .......
T Consensus       153 --------~~~~~~~~~~~~~~dg~~~~v~~~~-------------------~~~~~~~~~~-----------~~~~~~~  194 (355)
T d2bbkh_         153 --------IFPTAPDTFFMHCRDGSLAKVAFGT-------------------EGTPEITHTE-----------VFHPEDE  194 (355)
T ss_dssp             --------EEEEETTEEEEEETTSCEEEEECCS-------------------SSCCEEEECC-----------CCSCTTS
T ss_pred             --------EEECCCCCEEEECCCCCEEEEEECC-------------------CCEEEEEECC-----------CCCCEEC
T ss_conf             --------7306996369993899989998347-------------------8737999624-----------3330001


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEE--EEECCCC----------CCEEEEE
Q ss_conf             123332345689867744335899889954676656688877999989998168--8931489----------8858999
Q 002446          350 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI--AQFRAHK----------SPISALC  417 (921)
Q Consensus       350 ~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~i--a~l~aH~----------~pIsaLa  417 (921)
                      ..           ........+        .+.++.....|.+.+|++..+.+.  .....|.          .....++
T Consensus       195 ~~-----------~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  255 (355)
T d2bbkh_         195 FL-----------INHPAYSQK--------AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA  255 (355)
T ss_dssp             CB-----------CSCCEEETT--------TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred             CE-----------EEECCCCCC--------CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEE
T ss_conf             10-----------610215389--------97388746998299996589907998445784412685433035108999


Q ss_pred             ECCCCCEEEEEECCC---------CEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCC--EEEE
Q ss_conf             889999999996699---------78999958989988887667887315999974166643289999956999--9999
Q 002446          418 FDPSGILLVTASVQG---------HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN--WIMI  486 (921)
Q Consensus       418 FSPdGtlLATaS~dG---------t~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~--~LAs  486 (921)
                      ++|+|+.++.++.++         ..|.+||..++              +.+.++.-+   ..+.+++||||++  ++++
T Consensus       256 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~--------------~~~~~~~~~---~~~~~~a~spDG~~~l~v~  318 (355)
T d2bbkh_         256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--------------ERLAKFEMG---HEIDSINVSQDEKPLLYAL  318 (355)
T ss_dssp             EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--------------CEEEEEEEE---EEECEEEECCSSSCEEEEE
T ss_pred             EECCCCEEEEEECCCCCEEECCCCCEEEEEECCCC--------------CEEEEECCC---CCEEEEEECCCCCEEEEEE
T ss_conf             80799767887406871265179975999867888--------------498996689---9877999928999699999


Q ss_pred             EECCCCEEEEECCCCCCCEEECCCC
Q ss_conf             9499919998468999840223788
Q 002446          487 SSSRGTSHLFAINPLGGSVNFQPTD  511 (921)
Q Consensus       487 gS~DGTVhIwdi~~~g~~~~l~~H~  511 (921)
                      ++.|++|+|||+.+......+..+.
T Consensus       319 ~~~d~~i~v~D~~tg~~~~~i~~~G  343 (355)
T d2bbkh_         319 STGDKTLYIHDAESGEELRSVNQLG  343 (355)
T ss_dssp             ETTTTEEEEEETTTCCEEEEECCCC
T ss_pred             ECCCCEEEEEECCCCCEEEEEECCC
T ss_conf             7899989999999998999992869

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=2.5e-10  Score=74.13  Aligned_cols=265  Identities=8%  Similarity=-0.022  Sum_probs=128.9

Q ss_pred             CCEEEEEEECCCCCCCCCCEEEEEECC-CCEEEEECCCCCCEEEEEEEECCCE-----EEEEEECCCCCCCCCCCCCCCC
Q ss_conf             858999982035777878859999816-9589997158998178334304788-----9999920898774545743467
Q 002446           89 DQVLWAGFDKLESEAGATRRVLLLGYR-SGFQVWDVEEADNVHDLVSRYDGPV-----SFMQMLPRPITSKRSRDKFAEV  162 (921)
Q Consensus        89 d~V~w~~Fd~l~~d~~~~~~vLllG~~-~GfqVWDi~~~g~~~eivS~~dGpV-----r~i~ilP~P~~~~~~~d~F~~~  162 (921)
                      ..+..+.|..   |+   +.+++.+.. +.+.+||+++ ++....+....+..     ..+.+.|.              
T Consensus        34 ~~~~~i~~sp---Dg---~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~v~~s~d--------------   92 (337)
T d1pbyb_          34 PTPMVPMVAP---GG---RIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEERVKSLFGAALSPD--------------   92 (337)
T ss_dssp             TCCCCEEECT---TS---SEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEEEECTTCEEECTT--------------
T ss_pred             CCCCEEEECC---CC---CEEEEEECCCCEEEEEECCC-CCEEEEEECCCCCCCCCCEEEEEECCC--------------
T ss_conf             9823799999---98---99999978999499999999-929888724777312540254898687--------------


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEC--CCEEEE
Q ss_conf             888999928988677544578543348998876788999878969999978999199999389978999973--989999
Q 002446          163 RPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI  240 (921)
Q Consensus       163 rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~h~~~~~~~~~~tVriWDLkTg~~V~tL~f~S~V~sI~~S--~riLAV  240 (921)
                      ...++++.....          ...           ......+..+.+||+.+++.+..+.....+..+.++  ++++++
T Consensus        93 g~~l~~~~~~~~----------~~~-----------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  151 (337)
T d1pbyb_          93 GKTLAIYESPVR----------LEL-----------THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYG  151 (337)
T ss_dssp             SSEEEEEEEEEE----------ECS-----------SCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEE
T ss_pred             CCEEEEEECCCC----------CEE-----------EECCCCCCCEEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEE
T ss_conf             757999504776----------203-----------42034555212035667759884145687218998688888999


Q ss_pred             EECCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE---CC--CEEEECCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf             91998999988999477999618875588999987744562134---47--24896189840038986588655445455
Q 002446          241 CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAV---GP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSF  315 (921)
Q Consensus       241 a~~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~~~piAl---gp--RwLAyas~~~~~s~~GrvsPq~l~~s~~~  315 (921)
                      + ...+.+||..+.+...++..........    +.+....+..   ..  .+..+..   ..+...             
T Consensus       152 ~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------  210 (337)
T d1pbyb_         152 L-GRDLHVMDPEAGTLVEDKPIQSWEAETY----AQPDVLAVWNQHESSGVMATPFYT---ARKDID-------------  210 (337)
T ss_dssp             E-SSSEEEEETTTTEEEEEECSTTTTTTTB----CCCBCCCCCCCCTTTTEEEEEEEE---EBTTSC-------------
T ss_pred             E-CCCCCEEEEECCCEEEEEECCCCCCCCE----ECCCCCEEECCCCCCCEEEEEEEE---EEECCC-------------
T ss_conf             7-1775056630372788861477543311----357763140146653124663244---410366-------------


Q ss_pred             CCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             66568996300011000000101157517765421233323456898677443358998899546766566888779999
Q 002446          316 SGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVR  395 (921)
Q Consensus       316 ~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~Iw  395 (921)
                              .....      ....++.. .+.....+.  .....+........+....       +..+ ...++.+.+|
T Consensus       211 --------~~~~~------~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~i~v~  265 (337)
T d1pbyb_         211 --------PADPT------AYRTGLLT-MDLETGEMA--MREVRIMDVFYFSTAVNPA-------KTRA-FGAYNVLESF  265 (337)
T ss_dssp             --------TTSGG------GEEEEEEE-EETTTCCEE--EEEEEECSSCEEEEEECTT-------SSEE-EEEESEEEEE
T ss_pred             --------EEEEC------CCCCCEEE-EECCCCCEE--EEEECCCCCCEEEEEECCC-------CEEE-EECCCCEEEE
T ss_conf             --------04540------36761799-986888588--8983288750588874266-------1399-9735528999


Q ss_pred             ECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf             899981688931489885899988999999999669978999958989
Q 002446          396 DIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       396 Dl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~  443 (921)
                      |+.+++.+..+. +...+.+++|+|||++|++++.+|+ |.|||+.+.
T Consensus       266 d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~-i~v~D~~t~  311 (337)
T d1pbyb_         266 DLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGD-LAAYDAETL  311 (337)
T ss_dssp             ETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSE-EEEEETTTC
T ss_pred             ECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEECCCC-EEEEECCCC
T ss_conf             898896999974-8998899999789999999949992-999999987

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=9.7e-09  Score=64.89  Aligned_cols=188  Identities=10%  Similarity=0.105  Sum_probs=96.1

Q ss_pred             CEEEEEECCCC---CEEEEEECCCCEEEEEEC--CCEEEEEE--CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             69999978999---199999389978999973--98999991--998999988999477999618875588999987744
Q 002446          206 TVVHFYSLRSQ---SYVHMLKFRSPIYSVRCS--SRVVAICQ--AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG  278 (921)
Q Consensus       206 ~tVriWDLkTg---~~V~tL~f~S~V~sI~~S--~riLAVa~--~~~I~IfDl~T~~~l~tl~t~p~~~g~p~~~~~~~~  278 (921)
                      .+|++|++.+.   +.+..+..+..+..|.++  ++.|.++.  ++.|.+|++.......++..+...           .
T Consensus        14 ~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~-----------~   82 (333)
T d1ri6a_          14 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-----------P   82 (333)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-----------S
T ss_pred             CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCC-----------C
T ss_conf             93899998399976999997579988689995897999999778996999999689870798530136-----------9


Q ss_pred             CCCEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             56213447248961898400389865886554454556656899630001100000010115751776542123332345
Q 002446          279 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF  358 (921)
Q Consensus       279 ~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasGl~~lGd~g~~~ls~y~~~~  358 (921)
                      .     .|+.|++..+                           |+.+           +                     
T Consensus        83 ~-----~p~~l~~spD---------------------------g~~l-----------~---------------------   98 (333)
T d1ri6a_          83 G-----SLTHISTDHQ---------------------------GQFV-----------F---------------------   98 (333)
T ss_dssp             S-----CCSEEEECTT---------------------------SSEE-----------E---------------------
T ss_pred             C-----CCEEEEECCC---------------------------CCEE-----------E---------------------
T ss_conf             9-----8549999599---------------------------9887-----------4---------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE--ECCCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf             68986774433589988995467665668887799998999816889--3148988589998899999999966997899
Q 002446          359 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQ--FRAHKSPISALCFDPSGILLVTASVQGHNIN  436 (921)
Q Consensus       359 ~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~ia~--l~aH~~pIsaLaFSPdGtlLATaS~dGt~Ir  436 (921)
                                               +.....+.|.+|+.........  ...+...+.++.|+|||++++.++.++..|.
T Consensus        99 -------------------------v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~  153 (333)
T d1ri6a_          99 -------------------------VGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC  153 (333)
T ss_dssp             -------------------------EEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred             -------------------------ECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEE
T ss_conf             -------------------------2056888302200111000000100377853149886301013102565542056


Q ss_pred             EEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCC
Q ss_conf             9958989988887667887315999974166643289999956999999994-999199984689998
Q 002446          437 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG  503 (921)
Q Consensus       437 Iwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS-~DGTVhIwdi~~~g~  503 (921)
                      +|+......          ...................++|++++.++.... ..++..+|++.....
T Consensus       154 ~~~~~~~~~----------~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  211 (333)
T d1ri6a_         154 LFTVSDDGH----------LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG  211 (333)
T ss_dssp             EEEECTTSC----------EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred             EEEECCCCC----------CEEEECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCC
T ss_conf             897326874----------1001000133403887527999602014786204667217885103555

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.13  E-value=5e-10  Score=72.41  Aligned_cols=53  Identities=13%  Similarity=0.157  Sum_probs=31.3

Q ss_pred             CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf             8779999899981688931489885899988999999999669978999958989
Q 002446          389 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       389 ~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~  443 (921)
                      .+.|.+||..+++.+..+. +...+.+++|+|||++|++++.+|+ |+|||+.+.
T Consensus       271 ~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~-v~v~D~~t~  323 (346)
T d1jmxb_         271 LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND-LAVFNPDTL  323 (346)
T ss_dssp             ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE-EEEEETTTT
T ss_pred             CCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEECCCC-EEEEECCCC
T ss_conf             9838999899993999974-9997789999689999999948992-999999658

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.05  E-value=4.9e-08  Score=60.78  Aligned_cols=79  Identities=9%  Similarity=-0.013  Sum_probs=54.3

Q ss_pred             EEEEECCCCCEEEEEECCC--------CEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCE--
Q ss_conf             8999889999999996699--------789999589899888876678873159999741666432899999569999--
Q 002446          414 SALCFDPSGILLVTASVQG--------HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW--  483 (921)
Q Consensus       414 saLaFSPdGtlLATaS~dG--------t~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~--  483 (921)
                      ..++++|++..+..+..++        ..|.+||..++              ..+.++.-+   ..+.+++||||++.  
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~--------------~~~~~~~~~---~~~~~~a~spDG~~~l  329 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG--------------QTSGPISNG---HDSDAIIAAQDGASDN  329 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC--------------CEEECCEEE---EEECEEEECCSSSCEE
T ss_pred             EEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCC--------------CEEEEECCC---CCEEEEEECCCCCEEE
T ss_conf             56887179987999835897334058864999989999--------------486895589---9651799998999899


Q ss_pred             EEEEECCCCEEEEECCCCCCCEEECC
Q ss_conf             99994999199984689998402237
Q 002446          484 IMISSSRGTSHLFAINPLGGSVNFQP  509 (921)
Q Consensus       484 LAsgS~DGTVhIwdi~~~g~~~~l~~  509 (921)
                      +++...+++++|||..+......+..
T Consensus       330 y~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         330 YANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf             99948999699998999979999879

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.02  E-value=1.9e-07  Score=57.36  Aligned_cols=56  Identities=16%  Similarity=0.029  Sum_probs=25.1

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEEEC--CCEEEEEE-----------CCEEEEEECCCCCEEEEEEC
Q ss_conf             69999978999199999389978999973--98999991-----------99899998899947799961
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ-----------AAQVHCFDAATLEIEYAILT  262 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f~S~V~sI~~S--~riLAVa~-----------~~~I~IfDl~T~~~l~tl~t  262 (921)
                      ..|.+||+.+++.+.++..... ..+.++  ++.|+++.           ++.|.+||+.+.+.+..+..
T Consensus        28 ~~v~v~D~~tg~~~~~~~~g~~-~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~   96 (355)
T d2bbkh_          28 TQQFVIDGEAGRVIGMIDGGFL-PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL   96 (355)
T ss_dssp             EEEEEEETTTTEEEEEEEECSS-CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCC-CCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEC
T ss_conf             7199999999949999989999-85699489999999967776420158999899999999979889805

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.99  E-value=2.1e-08  Score=62.91  Aligned_cols=52  Identities=10%  Similarity=-0.012  Sum_probs=27.6

Q ss_pred             CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf             8779999899981688931489885899988999999999669978999958989
Q 002446          389 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       389 ~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~  443 (921)
                      .|.+.|||+.+++. ..+..|...+....|||||++||.... + .+.+|+...+
T Consensus        91 ~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~~-~-~l~~~~~~~g  142 (470)
T d2bgra1          91 TASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVWN-N-DIYVKIEPNL  142 (470)
T ss_dssp             EEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEET-T-EEEEESSTTS
T ss_pred             CCEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEEC-C-CCEEEECCCC
T ss_conf             73499998988851-312468742310101467641357514-6-4137988999

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.86  E-value=1.2e-06  Score=52.68  Aligned_cols=80  Identities=13%  Similarity=0.209  Sum_probs=40.6

Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEE-CCC
Q ss_conf             5899988999999999669978999958989988887667887315999974166643289999956999999994-999
Q 002446          413 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRG  491 (921)
Q Consensus       413 IsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS-~DG  491 (921)
                      +.++.|+|||++|+.++.....|.+|+....  +         .........-.........++|+||++++.+.. .++
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~--g---------~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~  215 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLAS--G---------EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN  215 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTT--S---------CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             CEEEEECCCCCEEEEEECCCCEEEEEECCCC--C---------CEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCC
T ss_conf             1597888999989982079987999970688--7---------1665251111278874089998899866999515899


Q ss_pred             CEEEEECCCCCC
Q ss_conf             199984689998
Q 002446          492 TSHLFAINPLGG  503 (921)
Q Consensus       492 TVhIwdi~~~g~  503 (921)
                      +|.+|++.....
T Consensus       216 ~V~v~~~~~~~~  227 (365)
T d1jofa_         216 RICEYVIDPATH  227 (365)
T ss_dssp             EEEEEEECTTTC
T ss_pred             EEEEEEECCCCC
T ss_conf             899999559875

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.83  E-value=2e-06  Score=51.42  Aligned_cols=56  Identities=13%  Similarity=0.094  Sum_probs=41.2

Q ss_pred             CCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCC--EEEEEECCCCEEEEEECCCC
Q ss_conf             68887799998999816889314898858999889999--99999669978999958989
Q 002446          386 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI--LLVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       386 ~~~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGt--lLATaS~dGt~IrIwdi~~~  443 (921)
                      ....+.+.+||..+++.+..+. +...+.+++|+|||+  ++++++.+++ |+|||+.++
T Consensus       294 ~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~-v~v~D~~tg  351 (373)
T d2madh_         294 HAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEV-LHIYDAGAG  351 (373)
T ss_pred             ECCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCE-EEEEECCCC
T ss_conf             2589869999899996989866-899825899998999899999679992-999999999

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.82  E-value=2.9e-08  Score=62.16  Aligned_cols=53  Identities=6%  Similarity=-0.008  Sum_probs=42.3

Q ss_pred             CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCC-E-EEEEECCCCEEEEEECCCC
Q ss_conf             87799998999816889314898858999889999-9-9999669978999958989
Q 002446          389 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-L-LVTASVQGHNINIFKIIPG  443 (921)
Q Consensus       389 ~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGt-l-LATaS~dGt~IrIwdi~~~  443 (921)
                      ...|.+||..+++.+..+... ..+..++|+|||+ + +++...+++ |+|||..++
T Consensus       293 ~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~~~~~-v~v~D~~tg  347 (368)
T d1mdah_         293 AENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEV-LDIYDAASD  347 (368)
T ss_dssp             EEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTE-EEEEESSSC
T ss_pred             CCEEEEEECCCCCEEEEECCC-CCEEEEEECCCCCEEEEEEECCCCE-EEEEECCCC
T ss_conf             864999989999486895589-9651799998999899999489996-999989999

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.81  E-value=5.4e-08  Score=60.56  Aligned_cols=51  Identities=12%  Similarity=0.071  Sum_probs=26.4

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEEEC--CCEEEEEECCEEEEEECCCCCE
Q ss_conf             69999978999199999389978999973--9899999199899998899947
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEI  256 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f~S~V~sI~~S--~riLAVa~~~~I~IfDl~T~~~  256 (921)
                      ..+.+||+.+++.......+..+..+.||  ++.||...+..++++++.+.+.
T Consensus        92 ~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~  144 (470)
T d2bgra1          92 ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS  144 (470)
T ss_dssp             EEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCE
T ss_conf             34999989888513124687423101014676413575146413798899946

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.77  E-value=2e-06  Score=51.37  Aligned_cols=221  Identities=11%  Similarity=0.080  Sum_probs=123.1

Q ss_pred             CEEEEEECCCCCEEEEEECC--CCEEEEEEC--CC--EEEEEECCE------------------EEEEECCCCCEEEEEE
Q ss_conf             69999978999199999389--978999973--98--999991998------------------9999889994779996
Q 002446          206 TVVHFYSLRSQSYVHMLKFR--SPIYSVRCS--SR--VVAICQAAQ------------------VHCFDAATLEIEYAIL  261 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f~--S~V~sI~~S--~r--iLAVa~~~~------------------I~IfDl~T~~~l~tl~  261 (921)
                      ++|.+||+++++....++.+  ..+..++++  ++  +++...+..                  +.++|..+++..+++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEE
T ss_conf             97999988778475579567887864348705699899995667754436766300145553238866375560647873


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEECC--CEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHCCE
Q ss_conf             1887558899998774456213447--24896189840038986588655445455665689963000110000001011
Q 002446          262 TNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG  339 (921)
Q Consensus       262 t~p~~~g~p~~~~~~~~~~piAlgp--RwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~lasG  339 (921)
                      ...++.             -++++|  +|+..+....                          ..+...+....+.+. .
T Consensus       174 v~~~p~-------------~v~~spdGk~a~vt~~ns--------------------------e~~~~id~~t~~~~d-~  213 (441)
T d1qnia2         174 VDGNLD-------------NTDADYTGKYATSTCYNS--------------------------ERAVDLAGTMRNDRD-W  213 (441)
T ss_dssp             ESSCCC-------------CEEECSSSSEEEEEESCT--------------------------TCCSSHHHHTCSSBC-E
T ss_pred             CCCCCC-------------CEEECCCCCEEEEEECCC--------------------------CCEEEEECCCCCEEE-E
T ss_conf             699865-------------469879999899985178--------------------------731898515712178-9


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEC
Q ss_conf             57517765421233323456898677443358998899546766566888779999899981688931489885899988
Q 002446          340 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD  419 (921)
Q Consensus       340 l~~lGd~g~~~ls~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFS  419 (921)
                      + .++..      .+.....|++                   .+......+.+.|++......+..++...+| ..+.++
T Consensus       214 i-~v~n~------p~~~~~~~dG-------------------k~~~v~~~~v~vvd~~~~~~v~~~IPvgksP-hGv~vS  266 (441)
T d1qnia2         214 V-VVFNV------ERIAAAVKAG-------------------NFKTIGDSKVPVVDGRGESEFTRYIPVPKNP-HGLNTS  266 (441)
T ss_dssp             E-EEEEH------HHHHHHHHTT-------------------CCBCCTTCCCCEEECSSSCSSEEEECCBSSC-CCEEEC
T ss_pred             E-EECCC------CCEEEEECCC-------------------CEEEECCCCCEEEECCCCCCEEEEEECCCCC-CCCEEC
T ss_conf             9-96885------1107996699-------------------9999699982899803687068997179886-672689


Q ss_pred             CCCCEEEEE-ECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             999999999-6699789999589899888876678873159999741666432899999569999999949991999846
Q 002446          420 PSGILLVTA-SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI  498 (921)
Q Consensus       420 PdGtlLATa-S~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi  498 (921)
                      |||++++.+ ..+++ +.|||+.+....-...-+....  ......-|.-   ....+|++++.-..+...|.+|..|++
T Consensus       267 PDGkyl~~~~~~~~t-vsv~d~~k~~~~~~~~~~~~~~--~~~~~~~glg---plh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         267 PDGKYFIANGKLSPT-VSVIAIDKLDDLFEDKIELRDT--IVAEPELGLG---PLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             TTSCEEEEECTTSSB-EEEEEGGGHHHHTTTSSCGGGG--EEECCBCCSC---EEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             CCCCEEEEECCCCCC-EEEEEEEHHHHHHHCCCCCCEE--EEEECCCCCC---CCCCEECCCCEEEECCCCCCEEEEECC
T ss_conf             998789990775993-8999832244575256884247--9960145547---665226578559985244316897235


Q ss_pred             C
Q ss_conf             8
Q 002446          499 N  499 (921)
Q Consensus       499 ~  499 (921)
                      .
T Consensus       341 ~  341 (441)
T d1qnia2         341 A  341 (441)
T ss_dssp             H
T ss_pred             C
T ss_conf             4

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.96  E-value=4e-05  Score=43.84  Aligned_cols=106  Identities=13%  Similarity=0.088  Sum_probs=57.8

Q ss_pred             CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCE--------------EEEEECCCC-----------C
Q ss_conf             779999899981688931489885899988999999999669978--------------999958989-----------9
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHN--------------INIFKIIPG-----------I  444 (921)
Q Consensus       390 G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~--------------IrIwdi~~~-----------~  444 (921)
                      ..+..+|..+..+..++.... ....+.|+|||++++.++.+...              |.+++....           .
T Consensus       156 ~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v  234 (441)
T d1qnia2         156 TMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI  234 (441)
T ss_dssp             EEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC
T ss_pred             CEEEEECCCCCEEEEEEECCC-CCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCEEEE
T ss_conf             238866375560647873699-8654698799998999851787318985157121789996885110799669999996


Q ss_pred             CCCC--CCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEE-EECCCCEEEEECCC
Q ss_conf             8888--76678873159999741666432899999569999999-94999199984689
Q 002446          445 LGTS--SACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI-SSSRGTSHLFAINP  500 (921)
Q Consensus       445 ~~~~--s~~~~~~~~~~l~~L~RG~t~a~I~sIaFSpDs~~LAs-gS~DGTVhIwdi~~  500 (921)
                      .+..  ...+.. ....++.+.-|-   ....+.+||||+|+.+ +..++|+.||++.+
T Consensus       235 ~~~~v~vvd~~~-~~~v~~~IPvgk---sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         235 GDSKVPVVDGRG-ESEFTRYIPVPK---NPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             TTCCCCEEECSS-SCSSEEEECCBS---SCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CCCCCEEEECCC-CCCEEEEEECCC---CCCCCEECCCCCEEEEECCCCCCEEEEEEEH
T ss_conf             999828998036-870689971798---8667268999878999077599389998322

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.56  E-value=0.0012  Score=35.28  Aligned_cols=64  Identities=17%  Similarity=0.243  Sum_probs=41.2

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEE---CCCCCEEEEEE
Q ss_conf             858999889999999996699789999589899888876678873159999741666432899999---56999999994
Q 002446          412 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF---SDDSNWIMISS  488 (921)
Q Consensus       412 pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a~I~sIaF---SpDs~~LAsgS  488 (921)
                      ....|+|+++|+++++...+++ |..|+...             ....+.....+.  ....+++|   ++|++.|.+++
T Consensus       209 ~pdgia~d~dG~l~va~~~~~~-V~~i~p~G-------------~~~~~~~~~~~~--~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         209 NIDDFAFDVEGNLYGATHIYNS-VVRIAPDR-------------STTIIAQAEQGV--IGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             CCSSEEEBTTCCEEEECBTTCC-EEEECTTC-------------CEEEEECGGGTC--TTEEEEEECCSTTTTTEEEEEE
T ss_pred             CCCCEEECCCCCEEEEECCCCC-EEEECCCC-------------CEEEEEECCCCC--CCCEEEEECCCCCCCCEEEEEC
T ss_conf             8752378799999999748991-89987899-------------789999637898--8824899708788789899998


Q ss_pred             CCC
Q ss_conf             999
Q 002446          489 SRG  491 (921)
Q Consensus       489 ~DG  491 (921)
                      ..+
T Consensus       273 ~~g  275 (302)
T d2p4oa1         273 NGG  275 (302)
T ss_dssp             CTT
T ss_pred             CCC
T ss_conf             898

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.44  E-value=0.0019  Score=33.98  Aligned_cols=81  Identities=15%  Similarity=0.106  Sum_probs=50.2

Q ss_pred             CEEEEEECCCCCEEEEEECCC-----CEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCEEEEEECC-CCCEE
Q ss_conf             858999889999999996699-----78999958989988887667887315999974166-643289999956-99999
Q 002446          412 PISALCFDPSGILLVTASVQG-----HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-TNAVIQDISFSD-DSNWI  484 (921)
Q Consensus       412 pIsaLaFSPdGtlLATaS~dG-----t~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~-t~a~I~sIaFSp-Ds~~L  484 (921)
                      ....+.|+|||++|+++....     -.|-+|++...           +.......+.... ......+++|+| |++||
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~-----------g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l  324 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC-----------GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM  324 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT-----------SCEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred             CCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCC-----------CCEEEEEEEEEEECCCCCCCEEEECCCCCCEE
T ss_conf             7631699899997899713578754227999985688-----------71446767667776799864789648999999


Q ss_pred             EEEE-CCCCEEEEECCCCCC
Q ss_conf             9994-999199984689998
Q 002446          485 MISS-SRGTSHLFAINPLGG  503 (921)
Q Consensus       485 AsgS-~DGTVhIwdi~~~g~  503 (921)
                      +++. .+++|.||+++....
T Consensus       325 ~va~~~s~~v~v~~~~~~~l  344 (365)
T d1jofa_         325 AITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             EEECSSSCEEEEEEEETTEE
T ss_pred             EEEECCCCEEEEEEEECCCC
T ss_conf             99967999499999828867

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.21  E-value=0.0036  Score=32.40  Aligned_cols=96  Identities=17%  Similarity=0.215  Sum_probs=63.8

Q ss_pred             CCEEEEEECCCCCEEEEEC--CCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf             8779999899981688931--48988589998899999999966997899995898998888766788731599997416
Q 002446          389 VGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG  466 (921)
Q Consensus       389 ~G~V~IwDl~s~~~ia~l~--aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG  466 (921)
                      .+.|.+||... +.+.+|-  ++......|+++++|.++++-...+..|.+|+.. +              ..+..+..+
T Consensus       177 ~~~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G--------------~~~~~~~~~  240 (279)
T d1q7fa_         177 AHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G--------------QLISALESK  240 (279)
T ss_dssp             GTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S--------------CEEEEEEES
T ss_pred             CCCEEEEECCC-CEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-C--------------CEEEEEECC
T ss_conf             55100230479-4445301132114876232314786999978998089999999-9--------------999999688


Q ss_pred             CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             66432899999569999999949991999846899
Q 002446          467 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       467 ~t~a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~  501 (921)
                      ........|++.+|++.+ +++.+.+|++|+....
T Consensus       241 ~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         241 VKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQL  274 (279)
T ss_dssp             SCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCC
T ss_pred             CCCCCEEEEEEECCCCEE-EEECCCEEEEEEEEEE
T ss_conf             888988379990899199-9918996999872203

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.19  E-value=0.0038  Score=32.31  Aligned_cols=238  Identities=13%  Similarity=0.135  Sum_probs=129.8

Q ss_pred             CCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             95899971589981783343047889999920898774545743467888999928988677544578543348998876
Q 002446          116 SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANY  195 (921)
Q Consensus       116 ~GfqVWDi~~~g~~~eivS~~dGpVr~i~ilP~P~~~~~~~d~F~~~rPLLavv~~g~~~g~~~~~Dg~~~~~~g~~~~~  195 (921)
                      +.+.|-|+.+..++.    ++--....+-|-|.              +++||+=.+                        
T Consensus        45 ~~VvIidl~n~~~~~----Rrpi~AdsAIMhP~--------------~~IiALrag------------------------   82 (327)
T d1utca2          45 AQVVIIDMNDPSNPI----RRPISADSAIMNPA--------------SKVIALKAG------------------------   82 (327)
T ss_dssp             EEEEEEETTSTTSCE----EEECCCSEEEECSS--------------SSEEEEEET------------------------
T ss_pred             CEEEEEECCCCCCCE----ECCCCHHHHHCCCC--------------CCEEEEECC------------------------
T ss_conf             439999889987633----14436166530888--------------757999628------------------------


Q ss_pred             CCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCEEEEEECCCC-CEEEEEECCCCCCCCCCCC
Q ss_conf             78899987896999997899919999938997899997-398999991998999988999-4779996188755889999
Q 002446          196 HDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAATL-EIEYAILTNPIVMGHPSAG  273 (921)
Q Consensus       196 h~~~~~~~~~~tVriWDLkTg~~V~tL~f~S~V~sI~~-S~riLAVa~~~~I~IfDl~T~-~~l~tl~t~p~~~g~p~~~  273 (921)
                                ++++++|+.+.+.++.+.++.+|.-=+| +.+.|+...+..||-|++... ++.+..+-+++..      
T Consensus        83 ----------~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~------  146 (327)
T d1utca2          83 ----------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA------  146 (327)
T ss_dssp             ----------TEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEECSSEEEEEESSSSCCCEEEEECCGGGT------
T ss_pred             ----------CEEEEEEHHHHHHHCEEECCCCCEEEEECCCCEEEEECCCCEEEECCCCCCCCHHHHHHCCCCC------
T ss_conf             ----------8689984468221115876888579994479889999188169973569998526623210124------


Q ss_pred             CCCCCCCCEEECCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHC-CEEEECCCCCCCCCC
Q ss_conf             8774456213447248961898400389865886554454556656899630001100000010-115751776542123
Q 002446          274 GIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA-AGIVNLGDLGYKKLS  352 (921)
Q Consensus       274 ~~~~~~~piAlgpRwLAyas~~~~~s~~GrvsPq~l~~s~~~~~~~s~g~~Va~~A~~~sK~la-sGl~~lGd~g~~~ls  352 (921)
                                 +.+.+-|..++-.                                    |+++ .|+..          
T Consensus       147 -----------~~QIInY~~d~~~------------------------------------kW~~l~GI~~----------  169 (327)
T d1utca2         147 -----------GCQIINYRTDAKQ------------------------------------KWLLLTGISA----------  169 (327)
T ss_dssp             -----------TCEEEEEEECTTS------------------------------------CEEEEEEEEE----------
T ss_pred             -----------CCEEEEEEECCCC------------------------------------CEEEEEEEEC----------
T ss_conf             -----------8638998989999------------------------------------8899995713----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCC---CEEEEEE
Q ss_conf             3323456898677443358998899546766566888779999899981688931489885899988999---9999996
Q 002446          353 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG---ILLVTAS  429 (921)
Q Consensus       353 ~y~~~~~p~~~~s~~sa~~~~~~~g~v~g~~~~~~~~G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdG---tlLATaS  429 (921)
                                       .              +..-.|.+.+|....+. -..+++|...-..+.++-+.   ++++-+.
T Consensus       170 -----------------~--------------~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~  217 (327)
T d1utca2         170 -----------------Q--------------QNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAV  217 (327)
T ss_dssp             -----------------E--------------TTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred             -----------------C--------------CCCEEEEEEEEEECCCC-CCCCCCEEEEEEEEECCCCCCCCEEEEEEE
T ss_conf             -----------------7--------------88305888899802286-752320346568887079988730999998


Q ss_pred             C--CCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCC-CCC-EEEEEECCCCCEEEEEECCCCEEEEECCCCCCCE
Q ss_conf             6--99789999589899888876678873159999741666-432-8999995699999999499919998468999840
Q 002446          430 V--QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT-NAV-IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV  505 (921)
Q Consensus       430 ~--dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t-~a~-I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g~~~  505 (921)
                      .  .|-.++|.++.....+....     . .+...+..-.. ... ...+..|+--..+..-+.-|.+|+||+.+.....
T Consensus       218 r~~~~~kLhIiEig~~~~g~~~f-----~-kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~  291 (327)
T d1utca2         218 RGQAGGKLHIIEVGTPPTGNQPF-----P-KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  291 (327)
T ss_dssp             EETTEEEEEEEECSCCCTTCCCC-----C-CEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCCCCEEEEEECCCCCCCCCCC-----C-CEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEE
T ss_conf             78987479999868875578887-----5-32688777963468847799964337999999667589999756662899


Q ss_pred             E
Q ss_conf             2
Q 002446          506 N  506 (921)
Q Consensus       506 ~  506 (921)
                      .
T Consensus       292 ~  292 (327)
T d1utca2         292 M  292 (327)
T ss_dssp             E
T ss_pred             E
T ss_conf             9

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0014  Score=34.78  Aligned_cols=52  Identities=13%  Similarity=0.141  Sum_probs=26.0

Q ss_pred             CCEEEEEECCCCCEEEEEC--CCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCC
Q ss_conf             8779999899981688931--48988589998899999999966997899995898
Q 002446          389 VGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIP  442 (921)
Q Consensus       389 ~G~V~IwDl~s~~~ia~l~--aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~  442 (921)
                      .|...++|+.++.......  .....+....|||||+.||-...  ..+.+.+...
T Consensus        90 ~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~--~nl~~~~~~~  143 (465)
T d1xfda1          90 TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVG  143 (465)
T ss_dssp             CSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSS
T ss_pred             CCCEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEEC--CEEEEEECCC
T ss_conf             35289998568845641576677643110024267856999961--3299995489

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.0031  Score=32.76  Aligned_cols=93  Identities=18%  Similarity=0.134  Sum_probs=57.8

Q ss_pred             EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf             79999899981688931489885899988999999999669978999958989988887667887315999974166643
Q 002446          391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA  470 (921)
Q Consensus       391 ~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~a  470 (921)
                      .|.+.++..... ..+..+........++|+|+.++..+.++....+|..... .          ....  .+   ....
T Consensus       152 ~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~-~----------~~~~--~~---~~~~  214 (269)
T d2hqsa1         152 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-T----------GGVQ--VL---SSTF  214 (269)
T ss_dssp             EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT-T----------CCEE--EC---CCSS
T ss_pred             EEEEEECCCCCC-EEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECC-C----------CCCE--EE---ECCC
T ss_conf             386542133100-0100012222343223454305778605880125676035-6----------4405--85---0686


Q ss_pred             CEEEEEECCCCCEEEEEECCC---CEEEEECCC
Q ss_conf             289999956999999994999---199984689
Q 002446          471 VIQDISFSDDSNWIMISSSRG---TSHLFAINP  500 (921)
Q Consensus       471 ~I~sIaFSpDs~~LAsgS~DG---TVhIwdi~~  500 (921)
                      .....+|||||++|+-.+.++   .++++++..
T Consensus       215 ~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         215 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             CCCCEEECCCCCEEEEEECCCCCCEEEEEECCC
T ss_conf             544558989999999998179984799999999

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.95  E-value=0.0061  Score=31.09  Aligned_cols=27  Identities=19%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             9999569999999949991999846899
Q 002446          474 DISFSDDSNWIMISSSRGTSHLFAINPL  501 (921)
Q Consensus       474 sIaFSpDs~~LAsgS~DGTVhIwdi~~~  501 (921)
                      -..|||||+.|+-. .++.++++++...
T Consensus       237 ~~~~SpDG~~I~f~-~~~~l~~~d~~~g  263 (281)
T d1k32a2         237 PRHLNTDGRRILFS-KGGSIYIFNPDTE  263 (281)
T ss_dssp             EEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred             CCCCCCCCCEEEEE-ECCEEEEEECCCC
T ss_conf             43286798999998-5999999989999

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0068  Score=30.83  Aligned_cols=71  Identities=18%  Similarity=0.217  Sum_probs=40.1

Q ss_pred             EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC--CEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf             799998999816889314898858999889999999996699--789999589899888876678873159999741666
Q 002446          391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT  468 (921)
Q Consensus       391 ~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dG--t~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t  468 (921)
                      .+.+.|...+..  .+..+........|||||+.|+-.+..+  ..|.++++...               ...+|-.  +
T Consensus       196 ~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~---------------~~~~lt~--~  256 (269)
T d2hqsa1         196 HIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR---------------FKARLPA--T  256 (269)
T ss_dssp             EEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC---------------CEEECCC--S
T ss_pred             EEEEEECCCCCC--EEEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCC---------------CEEEEEC--C
T ss_conf             256760356440--58506865445589899999999981799847999999999---------------7799857--9


Q ss_pred             CCCEEEEEECCC
Q ss_conf             432899999569
Q 002446          469 NAVIQDISFSDD  480 (921)
Q Consensus       469 ~a~I~sIaFSpD  480 (921)
                      ...+...+|||-
T Consensus       257 ~g~~~~p~WSP~  268 (269)
T d2hqsa1         257 DGQVKFPAWSPY  268 (269)
T ss_dssp             SSEEEEEEECCC
T ss_pred             CCCEEEEEECCC
T ss_conf             985883782898

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0035  Score=32.47  Aligned_cols=53  Identities=0%  Similarity=-0.154  Sum_probs=28.2

Q ss_pred             CEEEEEECCCCCEEEEEEC---CCCEEEEEEC--CCEEEEEECCEEEEEECCCCCEEE
Q ss_conf             6999997899919999938---9978999973--989999919989999889994779
Q 002446          206 TVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEY  258 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f---~S~V~sI~~S--~riLAVa~~~~I~IfDl~T~~~l~  258 (921)
                      ....+||+.+++.......   ...+....+|  ++.||-..++.|++.+..+.+..+
T Consensus        91 ~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~  148 (465)
T d1xfda1          91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR  148 (465)
T ss_dssp             SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE
T ss_pred             CCEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEECCEEEEEECCCCCEEE
T ss_conf             5289998568845641576677643110024267856999961329999548996589

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.70  E-value=0.01  Score=29.79  Aligned_cols=74  Identities=8%  Similarity=0.144  Sum_probs=32.4

Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEE-EEEECCC-CCCCEEEEEECCCCCEEEEEECCC
Q ss_conf             89998899999999966997899995898998888766788731599-9974166-643289999956999999994999
Q 002446          414 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL-YRLQRGL-TNAVIQDISFSDDSNWIMISSSRG  491 (921)
Q Consensus       414 saLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l-~~L~RG~-t~a~I~sIaFSpDs~~LAsgS~DG  491 (921)
                      +.|+|+|||+.|..++.....|..|++...  +.        ..... ....... .......+++..+|+..++....+
T Consensus       180 nGia~s~dg~~lyvad~~~~~I~~~d~~~~--g~--------~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g  249 (319)
T d2dg1a1         180 NGIALSTDEKVLWVTETTANRLHRIALEDD--GV--------TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG  249 (319)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECTT--SS--------SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT
T ss_pred             EEEEECCCCCEEEEECCCCCCEEEEEECCC--CC--------EECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCC
T ss_conf             000101222127874046891479997699--83--------62024633331257764103641738999999984899


Q ss_pred             CEEEEE
Q ss_conf             199984
Q 002446          492 TSHLFA  497 (921)
Q Consensus       492 TVhIwd  497 (921)
                      .|.+|+
T Consensus       250 ~V~~~~  255 (319)
T d2dg1a1         250 RVLVFN  255 (319)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
T ss_conf             899997

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=95.51  E-value=0.042  Score=26.24  Aligned_cols=25  Identities=16%  Similarity=0.174  Sum_probs=11.5

Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf             8999995699999999499919998
Q 002446          472 IQDISFSDDSNWIMISSSRGTSHLF  496 (921)
Q Consensus       472 I~sIaFSpDs~~LAsgS~DGTVhIw  496 (921)
                      ...++|++|+++.++...+++|..+
T Consensus       210 pdgia~d~dG~l~va~~~~~~V~~i  234 (302)
T d2p4oa1         210 IDDFAFDVEGNLYGATHIYNSVVRI  234 (302)
T ss_dssp             CSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred             CCCEEECCCCCEEEEECCCCCEEEE
T ss_conf             7523787999999997489918998

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.09  E-value=0.057  Score=25.45  Aligned_cols=59  Identities=12%  Similarity=0.051  Sum_probs=31.7

Q ss_pred             CEEEEEECCCCCEEEEEECC-CC---E----EEEEECCCEEEEEE------CCEEEEEECCCCCEEEEEECCC
Q ss_conf             69999978999199999389-97---8----99997398999991------9989999889994779996188
Q 002446          206 TVVHFYSLRSQSYVHMLKFR-SP---I----YSVRCSSRVVAICQ------AAQVHCFDAATLEIEYAILTNP  264 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f~-S~---V----~sI~~S~riLAVa~------~~~I~IfDl~T~~~l~tl~t~p  264 (921)
                      ..+.-.|.++|+.+...+.. ..   +    .-+.+...+++...      .+.|+.||+.|++.++...+.+
T Consensus       138 g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~  210 (573)
T d1kb0a2         138 GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVP  210 (573)
T ss_dssp             SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred             CCEEEECCCCCCCEECCCCCCCCCCEEEEECCEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECC
T ss_conf             5406661624300101467568765078601027970627992134455432218998568865102553104

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=94.98  E-value=0.061  Score=25.25  Aligned_cols=99  Identities=16%  Similarity=0.154  Sum_probs=60.0

Q ss_pred             CCCEEEEEECCCCCEE------EEECCC-CCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEE
Q ss_conf             8877999989998168------893148-988589998899999999966997899995898998888766788731599
Q 002446          388 NVGMVIVRDIVSKNVI------AQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL  460 (921)
Q Consensus       388 ~~G~V~IwDl~s~~~i------a~l~aH-~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l  460 (921)
                      ..+.|..||+.....+      ..+... ....-.|+++.+|.++++....+ .|.+|+...+            .....
T Consensus       196 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g-~I~~~dp~~g------------~~~~~  262 (314)
T d1pjxa_         196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS-HIEVFGPDGG------------QPKMR  262 (314)
T ss_dssp             TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT-EEEEECTTCB------------SCSEE
T ss_pred             CCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCC-EEEEEECCCC------------EEEEE
T ss_conf             2431177611676543015689971335666410257834785799982799-9999969999------------79999


Q ss_pred             EEEECCCCCCCEEEEEECCCCCEEEE-EECCCCEEEEECCCCCC
Q ss_conf             99741666432899999569999999-94999199984689998
Q 002446          461 YRLQRGLTNAVIQDISFSDDSNWIMI-SSSRGTSHLFAINPLGG  503 (921)
Q Consensus       461 ~~L~RG~t~a~I~sIaFSpDs~~LAs-gS~DGTVhIwdi~~~g~  503 (921)
                      ..+    ......+++|.||++.|.+ .+..++|..+++...|.
T Consensus       263 i~~----p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~  302 (314)
T d1pjxa_         263 IRC----PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK  302 (314)
T ss_dssp             EEC----SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred             EEC----CCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCH
T ss_conf             979----9998789999289899999987899199997899990

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.31  E-value=0.089  Score=24.30  Aligned_cols=94  Identities=12%  Similarity=0.104  Sum_probs=54.0

Q ss_pred             CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf             77999989998168893148988589998899999999966997899995898998888766788731599997416664
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN  469 (921)
Q Consensus       390 G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS~dGt~IrIwdi~~~~~~~~s~~~~~~~~~~l~~L~RG~t~  469 (921)
                      +.|..+|.............-.....|+|+++|.++++....++ |..++....             ...+.. ..+.  
T Consensus       161 ~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~-i~~~~~~~~-------------~~~~~~-~~~~--  223 (260)
T d1rwia_         161 NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGST-------------TSTVLP-FTGL--  223 (260)
T ss_dssp             TEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTE-EEEECTTCS-------------CCEECC-CCSC--
T ss_pred             CCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCE-EEEEECCCC-------------EEEEEC-CCCC--
T ss_conf             43322234310012221011478763123100013432148998-999969997-------------699970-6998--


Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf             328999995699999999499919998468999
Q 002446          470 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLG  502 (921)
Q Consensus       470 a~I~sIaFSpDs~~LAsgS~DGTVhIwdi~~~g  502 (921)
                      ....+|++++|++.+++-..++.  |+.+.+.+
T Consensus       224 ~~P~~i~~d~~g~l~vad~~~~r--I~~i~~~~  254 (260)
T d1rwia_         224 NTPLAVAVDSDRTVYVADRGNDR--VVKLTSLE  254 (260)
T ss_dssp             CCEEEEEECTTCCEEEEEGGGTE--EEEECCCG
T ss_pred             CCEEEEEEECCCCEEEEECCCCE--EEEEECCC
T ss_conf             98179999089999999799998--99995999

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.22  E-value=0.14  Score=23.13  Aligned_cols=58  Identities=17%  Similarity=0.068  Sum_probs=30.4

Q ss_pred             EEEEEECCCCCEEEEEECCC----------CEEEE-EECCCEEEEE--------ECCEEEEEECCCCCEEEEEECCC
Q ss_conf             99999789991999993899----------78999-9739899999--------19989999889994779996188
Q 002446          207 VVHFYSLRSQSYVHMLKFRS----------PIYSV-RCSSRVVAIC--------QAAQVHCFDAATLEIEYAILTNP  264 (921)
Q Consensus       207 tVriWDLkTg~~V~tL~f~S----------~V~sI-~~S~riLAVa--------~~~~I~IfDl~T~~~l~tl~t~p  264 (921)
                      .+.-.|.++|+.+-...+..          ++..- ......+++.        ....|+.||+.|++.+++..+.+
T Consensus       128 ~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~  204 (582)
T d1flga_         128 SVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVE  204 (582)
T ss_dssp             EEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESST
T ss_pred             EEEEECCCCCCEEEEECCCCCCCCCEEECCCEEECCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCEEEEEECCC
T ss_conf             49981166663021110247776612403866704884757999907665434654634872388886789871217

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.91  E-value=0.16  Score=22.86  Aligned_cols=37  Identities=16%  Similarity=0.162  Sum_probs=15.4

Q ss_pred             EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf             79999899981688931489885899988999999999
Q 002446          391 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTA  428 (921)
Q Consensus       391 ~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATa  428 (921)
                      .|.+.|+.++.. ..+..+...+...+|||||+.||-.
T Consensus        22 dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2          22 DLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIR   58 (281)
T ss_dssp             EEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEE
T ss_pred             CEEEEECCCCCE-EEEECCCCCCCCEEECCCCCEEEEE
T ss_conf             689998999987-9976699852677987899989999

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.04  E-value=0.2  Score=22.20  Aligned_cols=52  Identities=13%  Similarity=-0.044  Sum_probs=38.6

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEEEC-CCEEEEEECCEEEEEECCCCCEEE
Q ss_conf             69999978999199999389978999973-989999919989999889994779
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEY  258 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f~S~V~sI~~S-~riLAVa~~~~I~IfDl~T~~~l~  258 (921)
                      ..|.-||.++++. ..+.++..+..+.+. ...+.++....|+.||..+.+...
T Consensus        40 ~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          40 RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTL   92 (295)
T ss_dssp             TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEE
T ss_pred             CEEEEEECCCCEE-EEEECCCCCEEEEEECCCCEEEEEECCCEEEECCCCEEEE
T ss_conf             9999998998959-9998999817989965998899973763895046451357

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.62  E-value=0.23  Score=21.92  Aligned_cols=14  Identities=7%  Similarity=0.275  Sum_probs=6.8

Q ss_pred             CEEEEEECCCCCEE
Q ss_conf             69999978999199
Q 002446          206 TVVHFYSLRSQSYV  219 (921)
Q Consensus       206 ~tVriWDLkTg~~V  219 (921)
                      .+++++|+.+++.+
T Consensus       151 ~~l~v~Dl~tg~~~  164 (430)
T d1qfma1         151 VTIKFMKVDGAKEL  164 (430)
T ss_dssp             EEEEEEETTTTEEE
T ss_pred             HEEEEECCCCCEEC
T ss_conf             04677416764031

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.36  E-value=0.49  Score=19.97  Aligned_cols=39  Identities=15%  Similarity=0.019  Sum_probs=18.5

Q ss_pred             CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf             7799998999816889314898858999889999999996
Q 002446          390 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS  429 (921)
Q Consensus       390 G~V~IwDl~s~~~ia~l~aH~~pIsaLaFSPdGtlLATaS  429 (921)
                      +.+.+.|..+.++..++.-- .....+.++|||+++++.+
T Consensus       173 ~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         173 NVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEEEC-CCHHCCCCCCCCCEEEEEE
T ss_conf             68999966776698996408-9720153189999899971

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=84.22  E-value=0.71  Score=19.05  Aligned_cols=60  Identities=18%  Similarity=0.194  Sum_probs=34.5

Q ss_pred             CEEEEEECCCCCEEEEEECCCC--EEEEE----ECCCEEEE-EE------CCEEEEEECCCCCEEEEEECCCC
Q ss_conf             6999997899919999938997--89999----73989999-91------99899998899947799961887
Q 002446          206 TVVHFYSLRSQSYVHMLKFRSP--IYSVR----CSSRVVAI-CQ------AAQVHCFDAATLEIEYAILTNPI  265 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f~S~--V~sI~----~S~riLAV-a~------~~~I~IfDl~T~~~l~tl~t~p~  265 (921)
                      ..|.-.|.++|+.+........  -+.+.    .....+++ ..      .+.|+.||+.|++.++...+.+.
T Consensus       127 g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~  199 (560)
T d1kv9a2         127 GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPG  199 (560)
T ss_dssp             SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred             CEEEEEECCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCEECCCCCEEEEEECCCCEEEEEEEECCC
T ss_conf             8799997778957730576675540454320045068510365311001355389997788627766410034

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=80.21  E-value=1  Score=18.15  Aligned_cols=59  Identities=12%  Similarity=0.057  Sum_probs=36.6

Q ss_pred             CEEEEEECCCCCEEEEEECCC-----CEE-EEEECCCEEEE-EE------CCEEEEEECCCCCEEEEEECCC
Q ss_conf             699999789991999993899-----789-99973989999-91------9989999889994779996188
Q 002446          206 TVVHFYSLRSQSYVHMLKFRS-----PIY-SVRCSSRVVAI-CQ------AAQVHCFDAATLEIEYAILTNP  264 (921)
Q Consensus       206 ~tVriWDLkTg~~V~tL~f~S-----~V~-sI~~S~riLAV-a~------~~~I~IfDl~T~~~l~tl~t~p  264 (921)
                      ..|.=.|.+||+.+.......     .+. .-.+-...|.| ..      .+.|+.||+.|++++++..+.+
T Consensus       131 g~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~  202 (596)
T d1w6sa_         131 GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (596)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             CCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCC
T ss_conf             876854365684102310146555642245881777758993023444335732898878885778865358