Citrus Sinensis ID: 002464

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------92
MSFNAVIEDVCDDDFEGSRDEHQIFSEVFFRNDPGGTSKRCLVTGVINFEHDDSKISDILLCSNSDNSSITSQASSKNLNVEDSHNATENSGGACGSRCYPERSSLEGGNDESLNAKRMKFSVDNLTYIKPKSGQVLTSTDILKGTVAGTSCPSTDSVFRTVALHLVESSNQGITSGRYLLKQNVDNSAVDDMDVIKQSLPRLDGHDGKEAILGKAIASPISQESSATRLTVASPSVTVAEKSGFAQCAAETVDRSISVGLDASNISFKLDAKMDPRSLLQNHIFNLLTAAGWAVERRKRPSRKYMDTIYRSPEGRLFREFPKVWRVCGENLLADGSNVVPADDGKEWTDINHFHTDLFDTLINMEKVMCKSNLANELACQWCLLDPFVLVIFIDRKIGSLRKGDVVKAARSFIVDKREKSDPILALENVSSFETHCSQRDLPVHFDDATLGTKTCPQFDPSVHEVVSSGVTEQSGQSADEGRKCIKASGINAEDDYSAADVRLKKKTRRKSRKISEMRLTTLSHSDIQSLTLDIKTEVQDADASGVQLEPKEAQKQFLVNAAVQGSQKTPSSLGSCHLQIAKRGSKFEKTHHDCDGSKNGQKRPVTCRIKDDDLLGGELIKNGMWFMEGTRTVLSWLIIAGIIALNDVIQYRNPKDDAVIKDGLVTNNGIICKCCNLVFSVSQFKIHAGFKPNRPCLNLVMESGKPFTLCQLQAWSDEYKSRKSATRAGTVETDEDDKNDDSCGICGDGGELICCDNCPSAFHQACLSIQDLPTGSWFCSNCTCWICGDLVNDKEASSSFDALKCSQCEHKYHGECLKDMSKGAVSEAWFCNQSCQEVYSGLHSHIGIINHAADGFSWTLLRCIHEDQKVHSAQRFALKAECNSKLAVALTIMEECFLSMVDPRTGIDMIPHLLYNWR
cccHHHHHHHccccccccccccEEEEEEEccccccccccEEEEEEEEEEEcccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEEEcccccccccHHHHHcccccccccccccccEEcccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEcccccccccccEEEEcccccEEcccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEEEEccHHHHcccccEEEEEEccccccccccccHHHccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccHHccccccccccccccHHHHcHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccHHHHHHHHHcccccccEEEEEccccccEEEEEEEEcccEEEccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHcccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHccccccccccccccccccccccccccccEEcccccccccccEEEEEEEcccccccccccHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccc
ccccHHHHHHccccccccccccHHHHEEEEcccccccccEEEEEcEEEEEcccccccccEcccccccccEEcccccccccccccccccccccccccccccccHEEcccccccccEEEEEEEcccccccccccccccccccccccHccccccccccccEEEEEEEEEEEEcccccEccHHHHHcccccccHHccccEEEEccccccccccEEEEEEEEcccccHHHHHHHHHHcccccHHHHccccccHccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHcccEEccccccccccccHEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccEEEEEEcHHHHHHHcccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHcHHHccccccHccccccccccHccccccccccccccHHcccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHccccccccEEEEEcccccEEEEEEEEEccEEEEccccEEEcHHHHEEHccccccccccEEEEcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccEcccccEEEEEcccccHHHHHHccccccccccccccccEEEEccccccccccccccEEEEccccHHHHccHccccccccccccccccccccHHHHHHHHHHHccccccccccEEEEEEEcccccccccHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEccc
msfnaviedvcdddfegsrdehqifsevffrndpggtskrcLVTGVInfehddskisdillcsnsdnssitsqassknlnvedshnatensggacgsrcyperssleggndeslnAKRMKFSVdnltyikpksgqvltstdilkgtvagtscpstdSVFRTVALHLVEssnqgitsGRYLLKqnvdnsavddmDVIKqslprldghdgkeAILGKAiaspisqessatrltvaspsvtvaeksgfaqCAAETVDRSisvgldasnisfkldakmdprsLLQNHIFNLLTAAGwaverrkrpsrkymdtiyrspegrlfrefpKVWRVCGENlladgsnvvpaddgkewtdinHFHTDLFDTLINMEKVMCKSNLANELAcqwclldpFVLVIFIDrkigslrkgdVVKAARSFIVdkreksdpilalenvssfethcsqrdlpvhfddatlgtktcpqfdpsvhevvssgvteqsgqsadEGRKCIkasginaeddysAADVRLKKKTRRKSRKISEMRLTTLSHSDIQSLTLDIKTEvqdadasgvqlepkEAQKQFLVNAAvqgsqktpsslgscHLQIAKRGskfekthhdcdgskngqkrpvtcrikdddllggelikngmwfmeGTRTVLSWLIIAGIIALNdviqyrnpkddavikdglvtnngiickccnlvfsvsqfkihagfkpnrpclnlvmesgkpftlcqLQAWSDEyksrksatragtvetdeddknddscgicgdggeliccdncpsafhQACLsiqdlptgswfcsnctcwicgdlvndkeasssfdalkcsqcehkyhgeclkdmskgavsEAWFCNQSCQEVYSGLHSHIGIINHAADGFSWTLLRCIHEDQKVHSAQRFALKAECNSKLAVALTIMEECFlsmvdprtgidmiphllynwr
msfnaviedvcdddfegsrDEHQIFSevffrndpggtsKRCLVTGVINFEHDDSKISDILLCSNSDNSSITSQassknlnveDSHNAtensggacgsrcYPERSSLEGGNDESLNAKRMKFSVDNLtyikpksgqvltSTDILKGTVAGTSCPSTDSVFRTVALHLVEssnqgitsgRYLLKQNVDNSAVDDMDVIKQSLprldghdgKEAILGKAIaspisqessatRLTVASPSVTVAEKSGFAQCAAETVDRSISVGLDASNISFKLDAKMDPRSLLQNHIFNLltaagwaverrkrpsrkymdtiyrspegrlfrefPKVWRVCGENLLADGSNVVPADDGKEWTDINHFHTDLFDTLINMEKVMCKSNLANELACQWCLLDPFVLVIFIDRkigslrkgdvvkaarsfivdkreksdpiLALENVSSFETHCSQRDLPVHFDDATLGTKTCPQFDPSVHEVVSSGvteqsgqsadegRKCIKasginaeddysaadvrlkkktrrksrkisemrlttlshsdiqSLTLDIKTEVQDADASGVQLEPKEAQKQFLVNAAVQgsqktpsslgsCHLQIAKRGSKFekthhdcdgskngqkrpvtcrikdddlLGGELIKNGMWFMEGTRTVLSWLIIAGIIALNDVIQYRNPKDDAVIKDGLVTNNGIICKCCNLVFSVSQFKIHAGFKPNRPCLNLVMESGKPFTLCQLQAWSdeyksrksatragtvetdeddknddSCGICGDGGELICCDNCPSAFHQACLSIQDLPTGSWFCSNCTCWICGDLVNDKEASSSFDALKCSQCEHKYHGECLKDMSKGAVSEAWFCNQSCQEVYSGLHSHIGIINHAADGFSWTLLRCIHEDQKVHSAQRFALKAECNSKLAVALTIMEECFLSMVDPRTGIDMIphllynwr
MSFNAVIEDVCDDDFEGSRDEHQIFSEVFFRNDPGGTSKRCLVTGVINFEHDDSKISDILLCSNSDNSSITSQASSKNLNVEDSHNATENSGGACGSRCYPERSSLEGGNDESLNAKRMKFSVDNLTYIKPKSGQVLTSTDILKGTVAGTSCPSTDSVFRTVALHLVESSNQGITSGRYLLKQNVDNSAVDDMDVIKQSLPRLDGHDGKEAILGKAIASPISQESSATRLTVASPSVTVAEKSGFAQCAAETVDRSISVGLDASNISFKLDAKMDPRSLLQNHIFNLLTAAGWAVERRKRPSRKYMDTIYRSPEGRLFREFPKVWRVCGENLLADGSNVVPADDGKEWTDINHFHTDLFDTLINMEKVMCKSNLANELACQWCLLDPFVLVIFIDRKIGSLRKGDVVKAARSFIVDKREKSDPILALENVSSFETHCSQRDLPVHFDDATLGTKTCPQFDPSVHEVVSSGVTEQSGQSADEGRKCIKASGINAEDDYSAADVrlkkktrrksrkISEMRLTTLSHSDIQSLTLDIKTEVQDADASGVQLEPKEAQKQFLVNAAVQGSQKTPSSLGSCHLQIAKRGSKFEKTHHDCDGSKNGQKRPVTCRIKDDDLLGGELIKNGMWFMEGTRTVLSWLIIAGIIALNDVIQYRNPKDDAVIKDGLVTNNGIICKCCNLVFSVSQFKIHAGFKPNRPCLNLVMESGKPFTLCQLQAWSDEYKSRKSATRAGTVETDEDDKNDDSCGICGDGGELICCDNCPSAFHQACLSIQDLPTGSWFCSNCTCWICGDLVNDKEASSSFDALKCSQCEHKYHGECLKDMSKGAVSEAWFCNQSCQEVYSGLHSHIGIINHAADGFSWTLLRCIHEDQKVHSAQRFALKAECNSKLAVALTIMEECFLSMVDPRTGIDMIPHLLYNWR
*****VIEDVCDDDF*****EHQIFSEVFFRNDPGGTSKRCLVTGVINFEHDDSKISDILLC**********************************************************FSVDNLTYIKPKSGQVLTSTDILKGTVAGTSCPSTDSVFRTVALHLVESSNQGITSGRYLLKQNVDN**V*****************************************************GFAQCAAETVDRSISVGLDASNISFKLDAKMDPRSLLQNHIFNLLTAAGWAVERRKRPSRKYMDTIYRSPEGRLFREFPKVWRVCGENLLADGSNVVPADDGKEWTDINHFHTDLFDTLINMEKVMCKSNLANELACQWCLLDPFVLVIFIDRKIGSLRKGDVVKAARSFIVDKREKSDPILALENVSSFETHCSQRDLPVHFDDATLGTKTCP****************************************************************************************************************************************************VTCRIKDDDLLGGELIKNGMWFMEGTRTVLSWLIIAGIIALNDVIQYRNPKDDAVIKDGLVTNNGIICKCCNLVFSVSQFKIHAGFKPNRPCLNLVMESGKPFTLCQLQAWSD*************************CGICGDGGELICCDNCPSAFHQACLSIQDLPTGSWFCSNCTCWICGDLVNDKEASSSFDALKCSQCEHKYHGECLKDMSKGAVSEAWFCNQSCQEVYSGLHSHIGIINHAADGFSWTLLRCIHEDQKVHSAQRFALKAECNSKLAVALTIMEECFLSMVDPRTGIDMIPHLLYNW*
****AVI*DVCDDDFEGSRDEHQIFSEVFFRNDPGGTSKRCLVTGVINFEHDDS************************************************************************************************************ALHLVESSNQGITSGRYLLKQNVD*******************************AS**************************************************************NHIFNLLTAAGWAVER***********IYRSPEGRLFREFPKVWRVCGENLLADGSNVVPADDGKEWTDINHFHTDLFDTLINMEKVMCKSNLANELACQWCLLDPFVLVIFIDRKIGSLR***********************************************************************************************************************************************************************************************************************************GTRTVLSWLIIAGIIALNDVIQYRNPKDDAVIKDGLVTNNGIICKCCNLVFSVSQFKIHA****************************************************DSCGICGDGGELICCDNCPSAFHQACLSIQDLPTGSWFCSNCTCWICGDL***********ALKCSQCEHKYHGECLKDMSKGAVSEAWFCNQSCQEVYS*L********HAADGFSWTLLRCIHEDQKVHSAQRFALKAECNSKLAVALTIMEECFLSMVDPRTGIDMIPHLLYNW*
MSFNAVIEDVCDDDFEGSRDEHQIFSEVFFRNDPGGTSKRCLVTGVINFEHDDSKISDILLCSNSDNSSITSQASSKNLNVE******************PERSSLEGGNDESLNAKRMKFSVDNLTYIKPKSGQVLTSTDILKGTVAGTSCPSTDSVFRTVALHLVESSNQGITSGRYLLKQNVDNSAVDDMDVIKQSLPRLDGHDGKEAILGKAIASPISQESSATRLTVASPSVTVAEKSGFAQCAAETVDRSISVGLDASNISFKLDAKMDPRSLLQNHIFNLLTAAGWAVERRKRPSRKYMDTIYRSPEGRLFREFPKVWRVCGENLLADGSNVVPADDGKEWTDINHFHTDLFDTLINMEKVMCKSNLANELACQWCLLDPFVLVIFIDRKIGSLRKGDVVKAARSFIVDKREKSDPILALENVSSFETHCSQRDLPVHFDDATLGTKTCPQFDPSV*******************RKCIKASGINAEDDYSAADVR***********ISEMRLTTLSHSDIQSLTLDIKTEVQDADASGVQLEPKEAQKQFLVNAA*************CHLQIAKRGS****************KRPVTCRIKDDDLLGGELIKNGMWFMEGTRTVLSWLIIAGIIALNDVIQYRNPKDDAVIKDGLVTNNGIICKCCNLVFSVSQFKIHAGFKPNRPCLNLVMESGKPFTLCQLQAWSDE*********************DDSCGICGDGGELICCDNCPSAFHQACLSIQDLPTGSWFCSNCTCWICGDLVNDKEASSSFDALKCSQCEHKYHGECLKDMSKGAVSEAWFCNQSCQEVYSGLHSHIGIINHAADGFSWTLLRCIHEDQKVHSAQRFALKAECNSKLAVALTIMEECFLSMVDPRTGIDMIPHLLYNWR
*SFNAVIEDVCDDDFEGSRDEHQIFSEVFFRNDPGGTSKRCLVTGVINFEHDDSKISDILLCS*******************************C*S*C*PERSSLEGGNDESLNAKRMKFSVDNLTYIKPKSGQVLTSTDILKGTVAGTSCPSTDSVFRTVALHLVESSNQGITSGRYLLKQNVDNSAVDDMDVIKQSLPRLDGHDGKEAILGKAIASPISQESSATRLTVASPSVTVAEKSGFAQCAAETVDRSISVGLDASNISFKLDAKMDPRSLLQNHIFNLLTAAGWAVERRKRPSRKYMDTIYRSPEGRLFREFPKVWRVCGENLLADGSNVVPADDGKEWTDINHFHTDLFDTLINMEKVMCKSNLANELACQWCLLDPFVLVIFIDRKIGSLRKGDVVKAARSFI******************************************************************************************************************************************************************************************************************MWFMEGTRTVLSWLIIAGIIALNDVIQYRNPKDDAVIKDGLVTNNGIICKCCNLVFSVSQFKIHAGFKPNRPCLNLVMESGKPFTLCQLQAWSDEYKS***************DKNDDSCGICGDGGELICCDNCPSAFHQACLSIQDLPTGSWFCSNCTCWICGDLVNDKEASSSFDALKCSQCEHKYHGECLKDMSKGAVSEAWFCNQSCQEVYSGLHSHIGIINHAADGFSWTLLRCIHEDQKVHSAQRFALKAECNSKLAVALTIMEECFLSMVDPRTGIDMIPHLLYNWR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFNAVIEDVCDDDFEGSRDEHQIFSEVFFRNDPGGTSKRCLVTGVINFEHDDSKISDILLCSNSDNSSITSQASSKNLNVEDSHNATENSGGACGSRCYPERSSLEGGNDESLNAKRMKFSVDNLTYIKPKSGQVLTSTDILKGTVAGTSCPSTDSVFRTVALHLVESSNQGITSGRYLLKQNVDNSAVDDMDVIKQSLPRLDGHDGKEAILGKAIASPISQESSATRLTVASPSVTVAEKSGFAQCAAETVDRSISVGLDASNISFKLDAKMDPRSLLQNHIFNLLTAAGWAVERRKRPSRKYMDTIYRSPEGRLFREFPKVWRVCGENLLADGSNVVPADDGKEWTDINHFHTDLFDTLINMEKVMCKSNLANELACQWCLLDPFVLVIFIDRKIGSLRKGDVVKAARSFIVDKREKSDPILALENVSSFETHCSQRDLPVHFDDATLGTKTCPQFDPSVHEVVSSGVTEQSGQSADEGRKCIKASGINAEDDYSAADVRLKKKTRRKSRKISEMRLTTLSHSDIQSLTLDIKTEVQDADASGVQLEPKEAQKQFLVNAAVQGSQKTPSSLGSCHLQIAKRGSKFEKTHHDCDGSKNGQKRPVTCRIKDDDLLGGELIKNGMWFMEGTRTVLSWLIIAGIIALNDVIQYRNPKDDAVIKDGLVTNNGIICKCCNLVFSVSQFKIHAGFKPNRPCLNLVMESGKPFTLCQLQAWSDEYKSRKSATRAGTVETDEDDKNDDSCGICGDGGELICCDNCPSAFHQACLSIQDLPTGSWFCSNCTCWICGDLVNDKEASSSFDALKCSQCEHKYHGECLKDMSKGAVSEAWFCNQSCQEVYSGLHSHIGIINHAADGFSWTLLRCIHEDQKVHSAQRFALKAECNSKLAVALTIMEECFLSMVDPRTGIDMIPHLLYNWR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query919 2.2.26 [Sep-21-2011]
O43918545 Autoimmune regulator OS=H yes no 0.048 0.082 0.617 5e-12
Q9Z0E3552 Autoimmune regulator OS=M yes no 0.051 0.085 0.612 1e-11
Q6PDQ2 1915 Chromodomain-helicase-DNA no no 0.080 0.038 0.394 2e-11
Q14839 1912 Chromodomain-helicase-DNA no no 0.080 0.038 0.394 3e-11
Q641271051 Transcription intermediar no no 0.070 0.061 0.428 1e-10
O151641050 Transcription intermediar no no 0.070 0.061 0.414 5e-10
Q6E2N31163 E3 ubiquitin-protein liga no no 0.066 0.052 0.446 1e-09
Q8TDI0 1954 Chromodomain-helicase-DNA no no 0.045 0.021 0.522 2e-09
O16102 892 Chromodomain-helicase-DNA yes no 0.060 0.062 0.396 4e-09
O88491 2588 Histone-lysine N-methyltr no no 0.042 0.015 0.55 4e-09
>sp|O43918|AIRE_HUMAN Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1 Back     alignment and function desciption
 Score = 73.9 bits (180), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 38/47 (80%), Gaps = 2/47 (4%)

Query: 739 KNDDSCGICGDGGELICCDNCPSAFHQACLS--IQDLPTGSWFCSNC 783
           KN+D C +C DGGELICCD CP AFH ACLS  ++++P+G+W CS+C
Sbjct: 294 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 340
Transcriptional regulator that binds to DNA as a dimer or as a tetramer, but not as a monomer. Binds to G-doublets in an A/T-rich environment; the preferred motif is a tandem repeat of 5'-. ATTGGTTA-3' combined with a 5'-TTATTA-3' box. Binds to nucleosomes (By similarity). Binds to chromatin and interacts selectively with histone H3 that is not methylated at 'Lys-4', not phosphorylated at 'Thr-3' and not methylated at 'Arg-2'. Functions as a sensor of histone H3 modifications that are important for the epigenetic regulation of gene expression. Functions as a transcriptional activator and promotes the expression of otherwise tissue-specific self-antigens in the thymus, which is important for self tolerance and the avoidance of autoimmune reactions.
Homo sapiens (taxid: 9606)
>sp|Q9Z0E3|AIRE_MOUSE Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1 Back     alignment and function description
>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1 Back     alignment and function description
>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2 Back     alignment and function description
>sp|Q64127|TIF1A_MOUSE Transcription intermediary factor 1-alpha OS=Mus musculus GN=Trim24 PE=1 SV=1 Back     alignment and function description
>sp|O15164|TIF1A_HUMAN Transcription intermediary factor 1-alpha OS=Homo sapiens GN=TRIM24 PE=1 SV=3 Back     alignment and function description
>sp|Q6E2N3|TRI33_DANRE E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio GN=trim33 PE=2 SV=1 Back     alignment and function description
>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=2 SV=1 Back     alignment and function description
>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3 Back     alignment and function description
>sp|O88491|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Mus musculus GN=Nsd1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query919
356542320 1311 PREDICTED: uncharacterized protein LOC10 0.966 0.677 0.456 0.0
356546822 1310 PREDICTED: uncharacterized protein LOC10 0.974 0.683 0.449 0.0
8777481 1145 unnamed protein product [Arabidopsis tha 0.911 0.731 0.447 0.0
15232453 1189 Acyl-CoA N-acyltransferase with RING/FYV 0.911 0.704 0.427 0.0
297834364 1173 hypothetical protein ARALYDRAFT_478922 [ 0.899 0.705 0.430 1e-174
255566581 1336 DNA binding protein, putative [Ricinus c 0.463 0.318 0.556 1e-144
224121588727 predicted protein [Populus trichocarpa] 0.375 0.474 0.634 1e-141
225461640 1444 PREDICTED: uncharacterized protein LOC10 0.552 0.351 0.484 1e-139
147783856 1380 hypothetical protein VITISV_026339 [Viti 0.537 0.357 0.485 1e-137
449456717 1393 PREDICTED: uncharacterized protein LOC10 0.499 0.329 0.512 1e-135
>gi|356542320|ref|XP_003539616.1| PREDICTED: uncharacterized protein LOC100777440 [Glycine max] Back     alignment and taxonomy information
 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/993 (45%), Positives = 604/993 (60%), Gaps = 105/993 (10%)

Query: 8   EDVCDDDFEGSRDEHQIFSEVFFRNDPGGTSKRCLVTGVINFEHDDSKISDILLCSNSDN 67
           ED+CDD+FEGS +E QIFSEVF  N    ++++CLV   I+FEH+ +K +    CS+++N
Sbjct: 8   EDLCDDNFEGSNEERQIFSEVFSGNGIFQSNQKCLVPVAISFEHESAKNTFKSFCSSNEN 67

Query: 68  SSITSQASSKNLNVEDS-HNATENSGGACGSRCYPERSSLEGGNDESLNAKRMKFSVDNL 126
           S +   +SS+  + E+   N  ++S  A    C PE    E  NDE +N KRMKFS+  L
Sbjct: 68  SVVLHPSSSRLTHPEEEDFNVIQHSKEA-ALGCVPESFICEDQNDEDVNVKRMKFSLHEL 126

Query: 127 TYIKPKSGQVLTSTDILKGTVAGTSCPSTDSVFRTVALHLVESSNQGITSGRYLLKQNVD 186
              +  S + L+S+ + K  V+  S  +T      +A HLVESS  G+ S  YLL  N  
Sbjct: 127 ACSRSDSEKKLSSSRLSKVVVSNLSRAATSCDSEPIAFHLVESSKHGVISSCYLLNHNKV 186

Query: 187 N--SAVDDMDVIKQSLPRLDGHDGKEAILGKAIASPISQESSATRLTVASPSVTVAEKSG 244
           N  +A D +DV   +    DG+  KE  + KA ASP+SQES A R  V SPS TV +KSG
Sbjct: 187 NKQAAKDKVDVTNFNSTTADGNIAKELCVSKAAASPVSQESFANRRVVTSPSTTVVKKSG 246

Query: 245 FAQCAAETVDRSISVGLDASNISFKLDAKMDPRSLLQNHIFNLLTAAGWAVERRKRPSRK 304
                 E V+ S +VG+  SN S  L+ + DPR++LQ HI  LL  AGW++E+R+RPSR+
Sbjct: 247 SPLNPEEMVESS-NVGI--SNASSMLEEE-DPRTILQFHILQLLKMAGWSIEKRQRPSRR 302

Query: 305 YMDTIYRSPEGRLFREFPKVWRVCGENLLADGSNVVPADDGKEWTDINHFHTDLFDTLIN 364
           Y +++YR+PEG+  REF K WR+CGE L  +  N +   D KEWTDI+ F +DL  TLIN
Sbjct: 303 YPESVYRTPEGKTIREFTKAWRLCGELLSVEKCNFM-CRDYKEWTDISQFWSDLSSTLIN 361

Query: 365 MEKVMCKS-NLANELACQWCLLDPFVLVIFIDRKIGSLRKGDVVKAARSFIVDKREKS-D 422
           +EK   +S + A  LA +W LLDPFV+VIF DRKIG L+KG+ VKA  S +  K   +  
Sbjct: 362 VEKTKMQSEDPAAVLAYRWWLLDPFVVVIFFDRKIGVLKKGEAVKATWSLVSSKYMVACA 421

Query: 423 PILA---------------------LENVSSFETHCSQRDLPVH-FDDATLGTKTCPQFD 460
           PI +                     + N  SF+   S+  L  +   D  L      + +
Sbjct: 422 PIGSSSGNLNQVPGGSNVGAVHQARIRNSKSFDKQSSENYLETNKIIDGDLPMDMSEENN 481

Query: 461 PSV--HEVVSSGVT---EQSGQSADEGRKCIKASGINAEDDYSAADVRLKKKTRRKSRKI 515
            S   H +V S  +   +QS  S +EG K    S    ++ YSA+DV LKKK RRK +++
Sbjct: 482 ASSVSHGLVHSHDSRDMQQSECSEEEGGKISVDSVFGKDNKYSASDVILKKKMRRKCKRV 541

Query: 516 SEMRLTTLSHSDIQSLTLDIKTEVQDADASGVQLEPKEAQKQFLVNAAVQGSQKTPSSLG 575
           SE++L+   HSD+   T+  + ++ D +ASG++    E Q   + NA  + + +  SS+G
Sbjct: 542 SEIKLSMFYHSDMLGSTVTDQVQLLDGEASGLE----EVQDYLVDNAGKKRNCRKLSSVG 597

Query: 576 SCHLQIAKRGSKFEKTHHDCDGSKNGQKRPVTCRIKDDDLLGGELIKNGMW--------- 626
           +    I K          +C  +  G  +   C+IKDDDLL   + +N  +         
Sbjct: 598 AIQRNIRKT---------NCPTA--GTDKSNRCQIKDDDLLVSAIFRNKDFSPKAIRGNS 646

Query: 627 ---------------------------------------FMEGTRTVLSWLIIAGIIALN 647
                                                  F  G RT+LSWLI  G+I+LN
Sbjct: 647 SAKSRKSRGQRKLKSQKGRCRLLPRNPCNAGKHNKDCNRFYLGARTILSWLIDNGVISLN 706

Query: 648 DVIQYRNPKDDAVIKDGLVTNNGIICKCCNLVFSVSQFKIHAGFKPNRPCLNLVMESGKP 707
           DVIQYRNPKD+ VIKDG +T +GIIC CC+ V ++S+FK HAGF  NRPCLN+ MESG+P
Sbjct: 707 DVIQYRNPKDNVVIKDGRITKDGIICTCCDKVLTLSEFKFHAGFTVNRPCLNIFMESGEP 766

Query: 708 FTLCQLQAWSDEYKSRKSATRAGTVETDEDDKNDDSCGICGDGGELICCDNCPSAFHQAC 767
           FTLC LQAWS EYK+R+S  +A  V  D++DKNDDSCG+CG+GGELICCDNCPS FH AC
Sbjct: 767 FTLCLLQAWSAEYKARRSQNQA--VHADDNDKNDDSCGLCGEGGELICCDNCPSTFHLAC 824

Query: 768 LSIQDLPTGSWFCSNCTCWICGDLVNDKEASSSFDALKCSQCEHKYHGECLKDMSKG--A 825
           LS Q++P G W+C+NCTC ICG+LV DK+ S + D+L+CSQCEHKYH +CL+D  K   A
Sbjct: 825 LSTQEIPDGDWYCTNCTCRICGNLVIDKDTSDAHDSLQCSQCEHKYHEKCLEDRDKQEVA 884

Query: 826 VSEAWFCNQSCQEVYSGLHSHIGIINHAADGFSWTLLRCIHEDQKVHSAQRFALKAECNS 885
           +S+ WFC QSCQEVYSGL + +G++N  ADG SWTLLRCIH+DQKVHSAQ FALKA CN+
Sbjct: 885 ISDTWFCGQSCQEVYSGLQTQVGLVNQVADGISWTLLRCIHDDQKVHSAQWFALKAVCNT 944

Query: 886 KLAVALTIMEECFLSMVDPRTGIDMIPHLLYNW 918
           KLAVALTIMEECF+SM DPRTGI MIP +LYNW
Sbjct: 945 KLAVALTIMEECFVSMFDPRTGIHMIPQVLYNW 977

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356546822|ref|XP_003541821.1| PREDICTED: uncharacterized protein LOC100795889 [Glycine max] Back     alignment and taxonomy information
>gi|8777481|dbj|BAA97061.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15232453|ref|NP_188116.1| Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain [Arabidopsis thaliana] gi|332642075|gb|AEE75596.1| Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297834364|ref|XP_002885064.1| hypothetical protein ARALYDRAFT_478922 [Arabidopsis lyrata subsp. lyrata] gi|297330904|gb|EFH61323.1| hypothetical protein ARALYDRAFT_478922 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255566581|ref|XP_002524275.1| DNA binding protein, putative [Ricinus communis] gi|223536466|gb|EEF38114.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224121588|ref|XP_002330738.1| predicted protein [Populus trichocarpa] gi|222872514|gb|EEF09645.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225461640|ref|XP_002283071.1| PREDICTED: uncharacterized protein LOC100248637 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147783856|emb|CAN65752.1| hypothetical protein VITISV_026339 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449456717|ref|XP_004146095.1| PREDICTED: uncharacterized protein LOC101204381 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query919
TAIR|locus:2086395 1189 ROS4 "AT3G14980" [Arabidopsis 0.504 0.390 0.473 5e-125
TAIR|locus:2201021 1138 AT1G05380 "AT1G05380" [Arabido 0.313 0.253 0.435 1.1e-74
TAIR|locus:2147391 1179 AT5G36740 [Arabidopsis thalian 0.319 0.249 0.367 7.8e-58
TAIR|locus:2832118 1193 AT5G36670 [Arabidopsis thalian 0.319 0.246 0.367 8.4e-58
TAIR|locus:2178828 1065 AT5G58610 "AT5G58610" [Arabido 0.220 0.190 0.358 1.2e-34
TAIR|locus:2163961 557 AT5G63900 "AT5G63900" [Arabido 0.181 0.299 0.379 1.7e-25
TAIR|locus:2040550 1007 AT2G36720 "AT2G36720" [Arabido 0.127 0.116 0.325 1.5e-17
UNIPROTKB|C9JFR1244 AIRE "Autoimmune regulator" [H 0.048 0.184 0.617 2.2e-13
UNIPROTKB|C9JL37338 AIRE "Autoimmune regulator" [H 0.048 0.133 0.617 4.3e-12
UNIPROTKB|I3LQA6564 AIRE "Uncharacterized protein" 0.068 0.111 0.523 9.2e-12
TAIR|locus:2086395 ROS4 "AT3G14980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1071 (382.1 bits), Expect = 5.0e-125, Sum P(2) = 5.0e-125
 Identities = 236/498 (47%), Positives = 302/498 (60%)

Query:   444 VHFDDATLGTKTCPQFDPSVHEVVSSGVTEQSGQSADEGRKCIKASGINAEDDYSAADVX 503
             +H  D  + TK   Q   S  E  S    E SG    E  K I AS + AED + +    
Sbjct:   417 IH-SDLEVQTKISSQKVSSRLERQSIIGKEISGTHEQEASKGIVASKLIAEDMHESV--- 472

Query:   504 XXXXXXXXXXXISEMRLTTLS-HSDIQSLTLDIKTEVQDADASGVQLEPKEAQKQFLVNA 562
                        IS+++  +L  H  + S +L+   E QD +   + L  K ++ + L N 
Sbjct:   473 MRKNLHRRSKKISDIKPASLDQHDSLDSNSLN-SFEFQDKEMGNIHLVSKGSRDERLRNE 531

Query:   563 AVQGS----QKTPSSLGSCHLQIAK-RGSKFEKTHHDCDGSKNGQKRPVT---CRIKDDD 614
              +  S    +K        + Q     GS    T +    S++ QK+       R K  +
Sbjct:   532 KMNNSCCNSKKGRKKARKHYTQDDDLMGSTI--TRNKGKFSRSSQKKKTQKPKARTKKRN 589

Query:   615 LLGG--------ELIKN----GMWFMEGTRTVLSWLIIAGIIALNDVIQYRNPKDDAVIK 662
               GG          ++N    G W + G RTVLSWLI   +I+ ++VIQ R+P DD V+K
Sbjct:   590 NRGGCRLLPRSSSNVENHFFQGNWSILGPRTVLSWLIATKVISRDEVIQLRDPDDDTVVK 649

Query:   663 DGLVTNNGIICKCCNLVFSVSQFKIHAGFKPNRPCLNLVMESGKPFTLCQLQAWSDEYKS 722
              GLVT +G++C CCN   S+S+FK HAGF  N PCLNL M SGKPF  CQL+AWS EYK+
Sbjct:   650 TGLVTKDGVVCTCCNKTVSLSEFKNHAGFNQNCPCLNLFMGSGKPFASCQLEAWSAEYKA 709

Query:   723 RKSATRAGTVETDEDDKNDDSCGICGDGGELICCDNCPSAFHQACLSIQDLPTGSWFCSN 782
             R++  R    +  +DD NDDSCG+CGDGGELICCDNCPS FHQACLS+Q LP GSW+CS+
Sbjct:   710 RRNGWRLE--KASDDDPNDDSCGVCGDGGELICCDNCPSTFHQACLSMQVLPEGSWYCSS 767

Query:   783 CTCWICGDLVNDKEASSSFDALKCSQCEHKYHGECLKDMSKGA--VSEAWFCNQSCQEVY 840
             CTCWIC +LV+D  A  S D  KCSQC HKYHG CL+ +SK      E +FC ++C++VY
Sbjct:   768 CTCWICSELVSDN-AERSQD-FKCSQCAHKYHGTCLQGISKRRKLFPETYFCGKNCEKVY 825

Query:   841 SGLHSHIGIINHAADGFSWTLLRCIHEDQKVHSAQRFALKAECNSKLAVALTIMEECFLS 900
             +GL S +GIIN  ADG SW++L+C  ED  VHSA+R ALKAECNSKLAVAL+IMEE FLS
Sbjct:   826 NGLSSRVGIINPNADGLSWSILKCFQEDGMVHSARRLALKAECNSKLAVALSIMEESFLS 885

Query:   901 MVDPRTGIDMIPHLLYNW 918
             MVDPRTGIDMIPH+LYNW
Sbjct:   886 MVDPRTGIDMIPHVLYNW 903
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;ISS;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0009506 "plasmodesma" evidence=IDA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0004402 "histone acetyltransferase activity" evidence=IDA
GO:0010385 "double-stranded methylated DNA binding" evidence=IPI
GO:0042393 "histone binding" evidence=IDA
GO:0043971 "histone H3-K18 acetylation" evidence=IDA
GO:0043972 "histone H3-K23 acetylation" evidence=IDA
GO:0044030 "regulation of DNA methylation" evidence=IMP
GO:0044154 "histone H3-K14 acetylation" evidence=IDA
GO:0080188 "RNA-directed DNA methylation" evidence=IMP
TAIR|locus:2201021 AT1G05380 "AT1G05380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147391 AT5G36740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2832118 AT5G36670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178828 AT5G58610 "AT5G58610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163961 AT5G63900 "AT5G63900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040550 AT2G36720 "AT2G36720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|C9JFR1 AIRE "Autoimmune regulator" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9JL37 AIRE "Autoimmune regulator" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQA6 AIRE "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query919
pfam0062851 pfam00628, PHD, PHD-finger 7e-11
smart0024947 smart00249, PHD, PHD zinc finger 4e-09
cd11726127 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-tha 5e-07
COG5141 669 COG5141, COG5141, PHD zinc finger-containing prote 8e-07
cd11672120 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD 0.001
cd0012262 cd00122, MBD, MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8 0.002
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information 
 Score = 57.9 bits (140), Expect = 7e-11
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 744 CGICG---DGGELICCDNCPSAFHQACLSIQD----LPTGSWFCSNCTC 785
           C +CG   D GEL+ CD C   FH ACL        +P G W+C  C  
Sbjct: 2   CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPECKP 50

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|213034 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-thalassemia/mental retardation, X-linked) Back     alignment and domain information
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|213032 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD-like zinc finger domain Back     alignment and domain information
>gnl|CDD|238069 cd00122, MBD, MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 919
KOG1512381 consensus PHD Zn-finger protein [General function 99.02
KOG0956 900 consensus PHD finger protein AF10 [General functio 98.95
KOG1244336 consensus Predicted transcription factor Requiem/N 98.87
KOG4299 613 consensus PHD Zn-finger protein [General function 98.41
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 98.37
COG5141 669 PHD zinc finger-containing protein [General functi 98.34
KOG0954 893 consensus PHD finger protein [General function pre 98.22
KOG4299 613 consensus PHD Zn-finger protein [General function 98.0
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 98.0
KOG1973274 consensus Chromatin remodeling protein, contains P 97.97
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 97.96
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.89
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.87
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 97.66
KOG0383 696 consensus Predicted helicase [General function pre 97.64
KOG1244336 consensus Predicted transcription factor Requiem/N 97.58
KOG0383 696 consensus Predicted helicase [General function pre 97.49
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.43
KOG1512381 consensus PHD Zn-finger protein [General function 97.27
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.18
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 97.15
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 97.03
KOG0825 1134 consensus PHD Zn-finger protein [General function 97.0
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 96.88
KOG0825 1134 consensus PHD Zn-finger protein [General function 96.63
KOG0957 707 consensus PHD finger protein [General function pre 96.51
KOG1973274 consensus Chromatin remodeling protein, contains P 96.13
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 95.96
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 95.48
cd0012262 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and 95.14
KOG1245 1404 consensus Chromatin remodeling complex WSTF-ISWI, 95.06
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 94.91
cd0139677 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are me 94.85
KOG0957707 consensus PHD finger protein [General function pre 93.52
PF0142977 MBD: Methyl-CpG binding domain; InterPro: IPR00173 92.59
smart0039177 MBD Methyl-CpG binding domain. Methyl-CpG binding 90.69
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 90.25
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 90.14
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 89.21
KOG1245 1404 consensus Chromatin remodeling complex WSTF-ISWI, 87.47
cd0139773 HAT_MBD Methyl-CpG binding domains (MBD) present i 85.99
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 84.67
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 84.34
KOG1081 463 consensus Transcription factor NSD1 and related SE 83.15
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=99.02  E-value=9.3e-11  Score=125.08  Aligned_cols=90  Identities=27%  Similarity=0.592  Sum_probs=74.6

Q ss_pred             cccccccccCC---------ceeecCCCCCccccccccC-----CCCCCCCccccccc-ccccCCccCCccccCCCCccc
Q 002464          741 DDSCGICGDGG---------ELICCDNCPSAFHQACLSI-----QDLPTGSWFCSNCT-CWICGDLVNDKEASSSFDALK  805 (919)
Q Consensus       741 dd~C~VCgdGG---------eLLcCD~CpraFHlsCL~~-----~~vPeG~W~Cp~C~-C~iCge~~~Dke~~s~~~lL~  805 (919)
                      ...|.+|-++.         .+|+|..|..++|++|+.+     ..+-...|.|..|+ |.||++++.+      ..+++
T Consensus       258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E------~E~~F  331 (381)
T KOG1512|consen  258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIE------SEHLF  331 (381)
T ss_pred             hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccc------hheec
Confidence            35799997743         5999999999999999986     23446789999998 9999999765      45799


Q ss_pred             cCcccccCccccccCccCCCCCCcccccccchh
Q 002464          806 CSQCEHKYHGECLKDMSKGAVSEAWFCNQSCQE  838 (919)
Q Consensus       806 CdQCeraYHv~CL~~~~~~~~~g~WFCs~~Cq~  838 (919)
                      ||.|+|.||..|++..  ..+.|.|.|-..|..
T Consensus       332 CD~CDRG~HT~CVGL~--~lP~G~WICD~~C~~  362 (381)
T KOG1512|consen  332 CDVCDRGPHTLCVGLQ--DLPRGEWICDMRCRE  362 (381)
T ss_pred             cccccCCCCccccccc--cccCccchhhhHHHH
Confidence            9999999999999864  456899999866653

>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD) Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD) Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer Back     alignment and domain information
>smart00391 MBD Methyl-CpG binding domain Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query919
1xwh_A66 Nmr Structure Of The First Phd Finger Of Autoimmune 6e-12
2kft_A56 Nmr Solution Structure Of The First Phd Finger Doma 2e-11
1mm2_A61 Solution Structure Of The 2nd Phd Domain From Mi2b 4e-10
1mm3_A61 Solution Structure Of The 2nd Phd Domain From Mi2b 2e-09
3o33_A184 Crystal Structure Of Trim24 Phd-Bromo In The Free S 1e-08
3u5m_A207 Crystal Structure Of Trim33 Phd-Bromo In The Free S 2e-08
2l5u_A61 Structure Of The First Phd Finger (Phd1) From Chd4 4e-07
4gnd_A107 Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains 1e-06
2puy_A60 Crystal Structure Of The Bhc80 Phd Finger Length = 4e-04
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune Regulator Protein (Aire1): Insights Into Apeced Length = 66 Back     alignment and structure 
Iteration: 1

 Score = 70.1 bits (170), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 38/47 (80%), Gaps = 2/47 (4%)
Query: 739 KNDDSCGICGDGGELICCDNCPSAFHQACLS--IQDLPTGSWFCSNC 783
           KN+D C +C DGGELICCD CP AFH ACLS  ++++P+G+W CS+C
Sbjct: 6   KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 52
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 56 Back     alignment and structure
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b Length = 61 Back     alignment and structure
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C- Terminal Loop Replaced By Corresponding Loop From Wstf Length = 61 Back     alignment and structure
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 Back     alignment and structure
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 Back     alignment and structure
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b) Length = 61 Back     alignment and structure
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains Length = 107 Back     alignment and structure
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger Length = 60 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query919
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 8e-21
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 8e-21
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 1e-19
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 1e-19
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 3e-19
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 7e-18
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 1e-17
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 4e-17
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 2e-15
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 2e-15
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 2e-15
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 1e-13
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 3e-13
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 2e-11
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 1e-10
2pv0_B 386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 2e-10
1x4i_A70 Inhibitor of growth protein 3; structural genomics 2e-10
2k16_A75 Transcription initiation factor TFIID subunit 3; p 3e-10
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 5e-10
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 7e-10
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 2e-09
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 4e-09
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 6e-09
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 7e-08
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 7e-09
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 1e-08
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 1e-08
1weu_A91 Inhibitor of growth family, member 4; structural g 2e-08
2yt5_A66 Metal-response element-binding transcription facto 3e-08
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 1e-07
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 1e-07
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 2e-07
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 2e-07
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 4e-05
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 3e-07
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 1e-04
1we9_A64 PHD finger family protein; structural genomics, PH 3e-06
1wem_A76 Death associated transcription factor 1; structura 6e-06
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 5e-05
3o70_A68 PHD finger protein 13; PHF13, structural genomics 1e-04
1wew_A78 DNA-binding family protein; structural genomics, P 3e-04
1wee_A72 PHD finger family protein; structural genomics, PH 4e-04
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 4e-04
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
 Score = 85.9 bits (213), Expect = 8e-21
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 735 DEDDKNDDSCGICGDGGELICCDNCPSAFHQACLS--IQDLPTGSWFCSNCTCWIC 788
              D + + C +C DGGEL+CCD CPS++H  CL+  + ++P G W C  CTC   
Sbjct: 3   LGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159 Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 919
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 6e-16
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 9e-14
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 3e-10
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 7e-10
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 4e-09
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 6e-09
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 2e-08
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 4e-07
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 1e-05
d1ig4a_75 d.10.1.3 (A:) Methylation-dependent transcriptiona 7e-05
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 2e-04
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 2e-04
d1qk9a_92 d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 8e-04
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 0.004
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (173), Expect = 6e-16
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 736 EDDKNDDSCGICGDGGELICCDNCPSAFHQACL--SIQDLPTGSWFCSNCTC 785
             D + + C +C DGGEL+CCD CPS++H  CL   + ++P G W C  CTC
Sbjct: 4   GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query919
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.85
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 98.76
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.07
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.03
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.98
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 97.67
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 97.64
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.58
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 97.51
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.43
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.24
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.21
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 97.21
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 97.07
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 96.98
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 96.7
d1ig4a_75 Methylation-dependent transcriptional repressor MB 96.12
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 96.1
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 95.71
d1wema_76 Death associated transcription factor 1, Datf1 (DI 94.89
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 94.63
d1qk9a_92 Methyl-CpG-binding protein 2, MECP2 {Human (Homo s 93.64
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 92.85
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 92.44
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 92.09
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.2e-09  Score=78.14  Aligned_cols=52  Identities=46%  Similarity=1.258  Sum_probs=45.5

Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf             87665542221166894352478999555565557--78999974334432211
Q 002464          736 EDDKNDDSCGICGDGGELICCDNCPSAFHQACLSI--QDLPTGSWFCSNCTCWI  787 (919)
Q Consensus       736 ~~d~ndd~C~VCgdGGeLIcCD~CpkaFHl~CL~l--~~vPeG~W~Cp~C~C~I  787 (919)
                      .++.++++|.+|+++|+||+||+|+++||..|+.+  ..+|.+.|+|+.|++..
T Consensus         4 ~~d~~~~~C~~C~~~g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             CSCSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCC
T ss_conf             866886898678997958886999960761145888575899768997883845
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure