Citrus Sinensis ID: 002495
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 915 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FUY2 | 931 | Transcriptional corepress | yes | no | 0.802 | 0.788 | 0.745 | 0.0 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.298 | 0.178 | 0.341 | 5e-32 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.291 | 0.196 | 0.314 | 1e-28 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.315 | 0.229 | 0.298 | 1e-27 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.312 | 0.169 | 0.275 | 2e-24 | |
| O22212 | 554 | U4/U6 small nuclear ribon | no | no | 0.323 | 0.534 | 0.280 | 2e-24 | |
| D3TLL6 | 411 | Lissencephaly-1 homolog O | N/A | no | 0.302 | 0.673 | 0.255 | 2e-22 | |
| Q8BG40 | 658 | Katanin p80 WD40 repeat-c | yes | no | 0.269 | 0.375 | 0.296 | 3e-22 | |
| Q9BVA0 | 655 | Katanin p80 WD40 repeat-c | yes | no | 0.269 | 0.377 | 0.296 | 4e-22 | |
| P49695 | 742 | Probable serine/threonine | no | no | 0.273 | 0.336 | 0.277 | 5e-22 |
| >sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1100 bits (2844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/758 (74%), Positives = 645/758 (85%), Gaps = 24/758 (3%)
Query: 171 RRDGAHLLNGNTNGLLGNDS--LMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQR 228
RRDG+HL NG+ NGL+GN+S +MRQNPG+ +++A++ YEE++K+P R+SLD+AAMK R
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVKMPTQRESLDEAAMK-R 243
Query: 229 FGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGS---TPSEI 285
FG+N+GQLLDP+HAS +KSAAA+GQP+GQVLH T+GGMSPQVQ R+QQLPGS SEI
Sbjct: 244 FGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSEI 303
Query: 286 NPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFH 345
NPVL PR A PEGSL+GIPGSNQG NNLTLKGWPLTG + LRSGLLQQQKPF+Q+ Q FH
Sbjct: 304 NPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQS-QSFH 362
Query: 346 QIQMLTPQHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVG 404
Q+ MLTPQHQQ L+LAQQNL S S S+E+RR +MLLNNRSM+LGKDGL +SVGDV+ NVG
Sbjct: 363 QLNMLTPQHQQQLMLAQQNLNSQSVSEENRRLKMLLNNRSMTLGKDGLGSSVGDVLPNVG 422
Query: 405 SPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQH-------TLSNQQS 457
S L GG LLPRGDTDML+KLKMA + QQQQ QQQ PQ L+N Q
Sbjct: 423 SSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNPQP 482
Query: 458 QSSNHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTA 517
QSSNH++HQQ+K+G GS+T+DGS+SNSFRGN+QV KNQ+GRKRKQPVSSSGPANSSGTA
Sbjct: 483 QSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSGTA 542
Query: 518 NTAGPSPSSAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDK 577
NTAGPSPSSAPSTPSTHTPGDVISMP LPHSG +SK +MMFGT+G GTLTSPSNQL
Sbjct: 543 NTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQL---- 598
Query: 578 DLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSK 637
ADMDR VEDGSLDDNVESFLS +D D RDA R MDVS+GF+F E NSVRAST+K
Sbjct: 599 -----ADMDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTK 653
Query: 638 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 697
V CCHFSSDGK+LA+ GHDKKAVLW+TDT+K KT LEEH+++ITD+RFSPS RLATSSF
Sbjct: 654 VTCCHFSSDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSF 713
Query: 698 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 757
DKTVRVWDADN GYSLRTFMGHS+ V SLDFHP KDDLICSCD D EIRYWSINNGSCTR
Sbjct: 714 DKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTR 773
Query: 758 VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 817
V+KGG+ Q+RFQP +G+YLAA++ N+V++LD ETQA R SLQGH PI+SVCWDPSG+ L
Sbjct: 774 VYKGGSTQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFL 833
Query: 818 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 877
ASVSED V+VWT+G+GSEGECVHELSCNGNKF SCVFHP YPSLLVIGCYQSLELWNMSE
Sbjct: 834 ASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSE 893
Query: 878 NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915
NKTMTL AHEGLI +LAVST TG VASASHDK VKLWK
Sbjct: 894 NKTMTLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931
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Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 154/287 (53%), Gaps = 14/287 (4%)
Query: 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 694
TS V F+ DG LA+G D+ LW ++ K + H+S + V F+P LA+
Sbjct: 1200 TSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLAS 1259
Query: 695 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 754
S DKTVR+WD + L TF GH+ V S+ F+P+ ++ S GD +R W I++
Sbjct: 1260 GSSDKTVRLWDISSSK-CLHTFQGHTNWVNSVAFNPDG-SMLASGSGDQTVRLWEISSSK 1317
Query: 755 CTRVFKGGT---AQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCW 810
C F+G T + + F P G LA+ +++ V + + C + GHT + SV +
Sbjct: 1318 CLHTFQGHTSWVSSVTFSPD-GTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIF 1376
Query: 811 DPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQ 868
P G +LAS S D +VR+W++ S G+C++ L + N S VF P +LL G Q
Sbjct: 1377 SPDGAILASGSGDQTVRLWSI---SSGKCLYTLQGHNNWVGSIVFSPD-GTLLASGSDDQ 1432
Query: 869 SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914
++ LWN+S + + TL H + ++A S++ +AS S D+ +KLW
Sbjct: 1433 TVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLW 1479
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 140/277 (50%), Gaps = 10/277 (3%)
Query: 643 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 702
FS DG+ +A+G D +W + LE H S + V FSP R+A+ S DKT++
Sbjct: 933 FSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIK 992
Query: 703 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG- 761
+WD + G +T GH SV S+ F P+ + D D I+ W +G+CT+ +G
Sbjct: 993 IWDTAS-GTCTQTLEGHGGSVWSVAFSPDGQRVASGSD-DKTIKIWDTASGTCTQTLEGH 1050
Query: 762 -GTAQ-MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 819
G Q + F P R + + ++ + I DA + C +L+GH + SV + P G+ +AS
Sbjct: 1051 GGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVAS 1110
Query: 820 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 878
S D ++++W SG+ C L +G HS F P + ++++W+ +
Sbjct: 1111 GSIDGTIKIWDAASGT---CTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASG 1167
Query: 879 K-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914
T TL H G + ++A S + VAS S DK +K+W
Sbjct: 1168 TCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIW 1204
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Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 150/302 (49%), Gaps = 13/302 (4%)
Query: 618 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 677
DVSQG K ++++ T V FS+DG+ LA+G D+ +W+ T + H+
Sbjct: 796 DVSQG---KCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHT 852
Query: 678 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 737
+ + + +SP L + S D+T+++WD ++T GH+ V S+ F P+ L C
Sbjct: 853 NSVYSIAYSPDSKILVSGSGDRTIKLWDCQTH-ICIKTLHGHTNEVCSVAFSPDGQTLAC 911
Query: 738 SCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQAC 794
D +R W+ G C + + G T + F P + + + V + D +T
Sbjct: 912 V-SLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGKY 970
Query: 795 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853
SL+GHT I + + P + LAS S D SVR+W + S G+C L + + ++ V
Sbjct: 971 ISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNI---STGQCFQILLEHTDWVYAVV 1027
Query: 854 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 912
FHP + +++LWN+S + + TL+ H I +A S + +ASAS D+ V+
Sbjct: 1028 FHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVR 1087
Query: 913 LW 914
LW
Sbjct: 1088 LW 1089
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 140/298 (46%), Gaps = 12/298 (4%)
Query: 623 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 682
F +E N + VI S DG+ +A+G DK LW D +T L H +
Sbjct: 1060 FEMQERNRLEGHKDGVISISISRDGQTIASGSLDKTIKLWSRDGRLFRT-LNGHEDAVYS 1118
Query: 683 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 742
V FSP +A+ DKT+++W + G L+T GH +V ++ F P+ +L S D
Sbjct: 1119 VSFSPDGQTIASGGSDKTIKLWQTSD-GTLLKTITGHEQTVNNVYFSPDGKNL-ASASSD 1176
Query: 743 GEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSL 798
I+ W +G G G +RF P G+ +AA +E+ V + + +L
Sbjct: 1177 HSIKLWDTTSGQLLMTLTGHSAGVITVRFSPD-GQTIAAGSEDKTVKLWHRQDGKLLKTL 1235
Query: 799 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 857
GH ++S+ + P G+ LAS S D ++++W + ++G+ V L + + F
Sbjct: 1236 NGHQDWVNSLSFSPDGKTLASASADKTIKLWRI---ADGKLVKTLKGHNDSVWDVNFSSD 1292
Query: 858 YPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915
++ +++LWN + T T H G + A+ ++ +ASAS D ++LW+
Sbjct: 1293 GKAIASASRDNTIKLWNRHGIELETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQ 1350
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 146/321 (45%), Gaps = 25/321 (7%)
Query: 610 RDAGGRGMDVSQGFSFKEANSVRASTSK------VICCHFSSDGKLLATGGHDKKAVLWH 663
RD MD ++ K A + S + C FS DGK+LAT LW
Sbjct: 224 RDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWE 283
Query: 664 ----TDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 719
T+T+ L++H TDV FSP LAT+S D+T ++W D G L+TF GH
Sbjct: 284 MPQVTNTIAV---LKDHKERATDVVFSPVDDCLATASADRTAKLWKTD--GTLLQTFEGH 338
Query: 720 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 776
+ + FHP+ + + D R W IN G+ + +G + FQ
Sbjct: 339 LDRLARVAFHPSG-KYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAA 397
Query: 777 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSE 835
+ +++ + D T L QGH KP+ SV + P+G LAS ED+ R+W +
Sbjct: 398 SCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDL---RM 454
Query: 836 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLTAHEGLIAAL 893
+ ++ + + N + P L Y + +W+ + + +L HE +A+L
Sbjct: 455 RKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASL 514
Query: 894 AVSTETGYVASASHDKFVKLW 914
++ ++ +A+ SHD+ +KLW
Sbjct: 515 DITADSSCIATVSHDRTIKLW 535
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Arabidopsis thaliana (taxid: 3702) |
| >sp|D3TLL6|LIS1_GLOMM Lissencephaly-1 homolog OS=Glossina morsitans morsitans PE=2 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 141/309 (45%), Gaps = 32/309 (10%)
Query: 632 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 691
RAS ++VI F L+ + D +W +T + + +L+ H+S + D+ F
Sbjct: 108 RASITRVI---FHPTYSLMLSASEDAVIKIWDFETGEYERSLKGHTSSVQDIAFDSQGKL 164
Query: 692 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 751
LA+ S D ++++WD ++T +GH +V S+ F P D + S D I+ W +
Sbjct: 165 LASCSADLSIKLWDFQQSYDCVKTMLGHDHNVSSVAFVP-AGDYVLSASRDQTIKMWEVA 223
Query: 752 NGSCTRVFKGGTAQMRF-QPHL-GRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSV 808
G C + + G +R + H+ G A+ + ++ + I ++ C+ L+ H ++ +
Sbjct: 224 TGYCVKTYSGHREWIRMVRVHMDGNIFASCSIDHSIRIWSINSRDCKAELRAHDHTVECI 283
Query: 809 CWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 847
W P G LAS S D ++RVW VG G C+ L+ + N
Sbjct: 284 AWAPDISTTHINEAAGSDNKKGHHQGPFLASGSRDKTIRVWDVGVGL---CLFVLTGHDN 340
Query: 848 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS 906
FHP L+ +++ +W++ + M TL AH+ ++ + YV S S
Sbjct: 341 WVRELTFHPGGKYLVSASDDKTIRVWDLRNKRFMKTLYAHQHFCTSVDFHKKLPYVISGS 400
Query: 907 HDKFVKLWK 915
D VK+W+
Sbjct: 401 VDNTVKVWE 409
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. Glossina morsitans morsitans (taxid: 37546) |
| >sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 13/260 (5%)
Query: 645 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 704
+ G+LLATGG D + LW + +L H+S + VR + + S ++RVW
Sbjct: 31 ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 705 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 761
D + LRT MGH A++ SLDFHP + + S D I+ W I C ++G
Sbjct: 91 DLEA-AKILRTLMGHKANICSLDFHP-YGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 148
Query: 762 GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 820
+RF P G++LA+AA++ V + D GHT P++ V + P+ LLAS
Sbjct: 149 AVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASG 207
Query: 821 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 879
S D ++R W + C+ S +F+P L GC SL ++ +
Sbjct: 208 SSDRTIRFWDLEKFQVVSCIEG---EPGPVRSVLFNPDG-CCLYSGCQDSLRVYGWEPER 263
Query: 880 TM-TLTAHEGLIAALAVSTE 898
+ + G +A LA+ +
Sbjct: 264 CFDVVLVNWGKVADLAICND 283
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Mus musculus (taxid: 10090) |
| >sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 13/260 (5%)
Query: 645 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 704
+ G+LLATGG D + LW + +L H+S + VR + + S ++RVW
Sbjct: 31 ASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVW 90
Query: 705 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 761
D + LRT MGH A++ SLDFHP + + S D I+ W I C ++G
Sbjct: 91 DLEA-AKILRTLMGHKANICSLDFHP-YGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQ 148
Query: 762 GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 820
+RF P G++LA+AA++ V + D GHT P++ V + P+ LLAS
Sbjct: 149 AVRCLRFSPD-GKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASG 207
Query: 821 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 879
S D ++R W + C+ S +F+P L GC SL ++ +
Sbjct: 208 SSDRTIRFWDLEKFQVVSCIEG---EPGPVRSVLFNPDG-CCLYSGCQDSLRVYGWEPER 263
Query: 880 TM-TLTAHEGLIAALAVSTE 898
+ + G +A LA+ +
Sbjct: 264 CFDVVLVNWGKVADLAICND 283
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Homo sapiens (taxid: 9606) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 13/263 (4%)
Query: 618 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 677
DV+ G E +++ T V FS DG LLA+G D LW + + E H+
Sbjct: 487 DVASG---DELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHT 543
Query: 678 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 737
+ D+ FSP +A+ S D T R+W+ G GH+ V ++ F P+ ++
Sbjct: 544 HYVLDIAFSPDGSMVASGSRDGTARLWNVAT-GTEHAVLKGHTDYVYAVAFSPDG-SMVA 601
Query: 738 SCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 794
S DG IR W + G V + + F P G L +++ V + D +
Sbjct: 602 SGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPD-GSMLVHGSDSTVHLWDVASGEA 660
Query: 795 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853
+ +GHT + +V + P G LLAS S+D ++R+W V + E L + HS
Sbjct: 661 LHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHTT---LEGHTEPVHSVA 717
Query: 854 FHPTYPSLLVIGCYQSLELWNMS 876
FHP +L ++ +W ++
Sbjct: 718 FHPEGTTLASASEDGTIRIWPIA 740
|
May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 915 | ||||||
| 356507762 | 912 | PREDICTED: transcriptional corepressor L | 0.991 | 0.994 | 0.827 | 0.0 | |
| 356507764 | 903 | PREDICTED: transcriptional corepressor L | 0.981 | 0.994 | 0.818 | 0.0 | |
| 356563836 | 912 | PREDICTED: transcriptional corepressor L | 0.984 | 0.987 | 0.823 | 0.0 | |
| 225430178 | 910 | PREDICTED: transcriptional corepressor L | 0.981 | 0.986 | 0.833 | 0.0 | |
| 357466351 | 941 | NAD(P)H-quinone oxidoreductase subunit [ | 0.969 | 0.942 | 0.768 | 0.0 | |
| 449522548 | 900 | PREDICTED: transcriptional corepressor L | 0.974 | 0.991 | 0.787 | 0.0 | |
| 449441950 | 900 | PREDICTED: transcriptional corepressor L | 0.974 | 0.991 | 0.786 | 0.0 | |
| 356563834 | 903 | PREDICTED: transcriptional corepressor L | 0.974 | 0.987 | 0.815 | 0.0 | |
| 449441952 | 891 | PREDICTED: transcriptional corepressor L | 0.965 | 0.991 | 0.778 | 0.0 | |
| 356552537 | 893 | PREDICTED: transcriptional corepressor L | 0.969 | 0.993 | 0.794 | 0.0 |
| >gi|356507762|ref|XP_003522633.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1394 bits (3607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/920 (82%), Positives = 808/920 (87%), Gaps = 13/920 (1%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQ QQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQQQQQHMQMQQLL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q+ Q QQ Q+ QQQQQ QQQ QQQQQQQQQ PQ QQQ QQQQ RD AHLLNG
Sbjct: 121 LQRAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNG 180
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL+GN PGTANA+AT+MYEE+LKLP+ RD LDDAAMKQRFGENMGQLLDPN
Sbjct: 181 SANGLVGN-------PGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGENMGQLLDPN 233
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGST---PSEINPVLNPRAAGPE 297
HAS +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST EI+PVLNPRAAGPE
Sbjct: 234 HASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPE 293
Query: 298 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 356
GSLMG+PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+QMLTPQHQQ
Sbjct: 294 GSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQ 353
Query: 357 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 416
L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL GG PR
Sbjct: 354 LMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGGPPFPR 413
Query: 417 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAG-S 475
GDTDML+KLK+AQ+ QQQQQ QQ QQH LSNQQSQ+SNH++HQQDK+G G S
Sbjct: 414 GDTDMLMKLKLAQLQQQQQQSSTNAQQQQL-QQHVLSNQQSQTSNHSMHQQDKVGGGGGS 472
Query: 476 VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHT 535
VT+DGSMSNSFRGNDQVSKNQ RKRKQP SSSGPANSSGTANT GPSPSSAPSTPSTHT
Sbjct: 473 VTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHT 532
Query: 536 PGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLD 595
PGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+DR VEDGSLD
Sbjct: 533 PGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLD 592
Query: 596 DNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH 655
+NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSSDGKLLA+GGH
Sbjct: 593 ENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGH 652
Query: 656 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 715
DK+ VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD DNPGYSLRT
Sbjct: 653 DKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRT 712
Query: 716 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY 775
F GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRY
Sbjct: 713 FTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRY 772
Query: 776 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 835
LAAAAEN+VSI D ETQACR SL+GHTKP+D VCWDPSGELLASVSEDSVRVWT+GSGSE
Sbjct: 773 LAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWTLGSGSE 832
Query: 836 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV 895
GECVHELSCNGNKFH+ VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+AH+GLI +LAV
Sbjct: 833 GECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAV 892
Query: 896 STETGYVASASHDKFVKLWK 915
ST G VASASHDKF+KLWK
Sbjct: 893 STVNGLVASASHDKFLKLWK 912
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507764|ref|XP_003522634.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1368 bits (3542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 753/920 (81%), Positives = 799/920 (86%), Gaps = 22/920 (2%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQ QQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQQQQQHMQMQQLL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q+ Q QQ Q+ QQQQQ QQQ QQQQQQQQQ PQ QQQ QQQQ RD AHLLNG
Sbjct: 121 LQRAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQSQQQQSQPQQQQSRDRAHLLNG 180
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL+GN PGTANA+AT+MYEE+LKLP+ RD LDDAAMKQRFGENMGQLLDPN
Sbjct: 181 SANGLVGN-------PGTANALATKMYEERLKLPLQRDPLDDAAMKQRFGENMGQLLDPN 233
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGST---PSEINPVLNPRAAGPE 297
HAS +KSAAA GQPSGQVLHG AGGMSPQVQAR+QQLPGST EI+PVLNPRAAGPE
Sbjct: 234 HASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPE 293
Query: 298 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 356
GSLMG+PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKPF+QAPQPFHQ+QMLTPQHQQ
Sbjct: 294 GSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQ 353
Query: 357 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 416
L+LAQQNL SPSAS+ESRR RMLLNNR++ L KD LSN VGDVVSNVGSPL GG PR
Sbjct: 354 LMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGGPPFPR 413
Query: 417 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAG-S 475
GDTDML+KLK+AQ+ QQQQQ QQ QQH LSNQQSQ+SNH++HQQDK+G G S
Sbjct: 414 GDTDMLMKLKLAQLQQQQQQSSTNAQQQQL-QQHVLSNQQSQTSNHSMHQQDKVGGGGGS 472
Query: 476 VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHT 535
VT+DGSMSNSFRGNDQVSKNQ RKRKQP SSSGPANSSGTANT GPSPSSAPSTPSTHT
Sbjct: 473 VTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHT 532
Query: 536 PGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLD 595
PGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQL AD+DR VEDGSLD
Sbjct: 533 PGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQL---------ADVDRFVEDGSLD 583
Query: 596 DNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH 655
+NVESFLSHDDTDPRD GR MDVS+GF+F + NSVRASTSKV CCHFSSDGKLLA+GGH
Sbjct: 584 ENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGH 643
Query: 656 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 715
DK+ VLW+TD+LK K LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD DNPGYSLRT
Sbjct: 644 DKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRT 703
Query: 716 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY 775
F GHS SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRY
Sbjct: 704 FTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRY 763
Query: 776 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 835
LAAAAEN+VSI D ETQACR SL+GHTKP+D VCWDPSGELLASVSEDSVRVWT+GSGSE
Sbjct: 764 LAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWTLGSGSE 823
Query: 836 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV 895
GECVHELSCNGNKFH+ VFHPTYPSLLVIGCYQSLELWNMSENKTMTL+AH+GLI +LAV
Sbjct: 824 GECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAV 883
Query: 896 STETGYVASASHDKFVKLWK 915
ST G VASASHDKF+KLWK
Sbjct: 884 STVNGLVASASHDKFLKLWK 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563836|ref|XP_003550164.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1360 bits (3520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 763/926 (82%), Positives = 809/926 (87%), Gaps = 25/926 (2%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQ QQQ Q Q QQQQQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQGQQQPQPQ-KLQHQQQQQ 119
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR----RDGAH 176
QQQ +QMQQILLQR QQQQQ QQQ QQQQQ QQQ QQ QQQ QQQQQ RD AH
Sbjct: 120 QQQHMQMQQILLQRAQQQQQQQQQQQQQQQQPQQQQQQQQPQQQHQQQQQPQQQGRDRAH 179
Query: 177 LLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL 236
LLNG TNGL+GN P TANA+AT+MYEE+LKLP+ RDSL+DAAMKQRFG+ Q+
Sbjct: 180 LLNGGTNGLVGN-------PSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGD---QI 229
Query: 237 LDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTP---SEINPVLNPRA 293
LDPNHAS +KS+AATGQPSGQVLHG AG MSPQVQARSQQLPGSTP SEINPVLNPRA
Sbjct: 230 LDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 289
Query: 294 AGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQIQMLTP 352
AGPEGSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQ FHQ+ MLTP
Sbjct: 290 AGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTP 349
Query: 353 QHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGG 411
QHQQ L+LAQQNL SPSASD+SRR RMLLNNR+M + KDGLSN VGD+VSNVGSPL AGG
Sbjct: 350 QHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAGG 409
Query: 412 HLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMG 471
PR DTDML+KLK+AQ Q QQQQ QQHTLSNQQSQ+SNH++HQQDKMG
Sbjct: 410 PAFPRSDTDMLMKLKLAQ--LQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMG 467
Query: 472 PAGS--VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPS 529
G V +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPSSAPS
Sbjct: 468 GGGGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPS 526
Query: 530 TPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLV 589
TPSTHTPGDV+SMP LPHSG++SKPLMMF DGAGTLTSPSNQLWDDKDLEL+AD+DR V
Sbjct: 527 TPSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQLWDDKDLELQADVDRFV 586
Query: 590 EDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL 649
EDGSLDDNVESFLS DDTD RD GR MDVS+GF+F E NSVRAST+KV CCHFSSDGKL
Sbjct: 587 EDGSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKL 646
Query: 650 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 709
LA+GGHDKKAVLW TD+LK K LEEH+SLITDVRFSPSMPRLATSS DKTVRVWD +NP
Sbjct: 647 LASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENP 706
Query: 710 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 769
GYSLRTF GHS+ VMSLDFHPNKDDLICSCD DGEIRYWSINNG+C RV KGG QMRFQ
Sbjct: 707 GYSLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSKGGAVQMRFQ 766
Query: 770 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWT 829
P LGRYLAAAAENVVSILD ETQA R SL+GHTK I SVCWDPSGE LASVSEDSVRVWT
Sbjct: 767 PRLGRYLAAAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSVRVWT 826
Query: 830 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGL 889
+GSGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+AHEGL
Sbjct: 827 LGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGL 886
Query: 890 IAALAVSTETGYVASASHDKFVKLWK 915
IAALAVST G VASASHDKFVKLWK
Sbjct: 887 IAALAVSTVNGLVASASHDKFVKLWK 912
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430178|ref|XP_002284900.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1358 bits (3516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 773/927 (83%), Positives = 817/927 (88%), Gaps = 29/927 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQ QQ Q Q QQ QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQQPQHQQQQQQQQQLQMQQL 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q RHAQQQQQ QQQ QQQQQQQQQ QQQQ QQQQRRDGAHLLNG
Sbjct: 121 LLQ----------RHAQQQQQQQQQQQQQQQQQQQ-----QQQQQPQQQQRRDGAHLLNG 165
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
TNGL+GND LMR NP TANA+AT+MYEE+LKLP+ RDSLDDA MKQRF EN+GQLLDPN
Sbjct: 166 TTNGLVGNDPLMRTNPATANALATKMYEERLKLPIQRDSLDDATMKQRFSENVGQLLDPN 225
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTP---SEINPVLNPRAAGPE 297
HA+ +KSAAA GQPSGQVLH +AGGMSPQVQAR+QQLPGSTP SE+NPVLNPRA GPE
Sbjct: 226 HATILKSAAAAGQPSGQVLHVSAGGMSPQVQARNQQLPGSTPDIKSEMNPVLNPRAGGPE 285
Query: 298 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQA-PQPFHQIQMLTPQHQQ 356
GSL+GIPGSNQGGNNLTLKGWPLTGL+ LRSGLLQQ KPFIQA PQPFHQ+QML QQ
Sbjct: 286 GSLIGIPGSNQGGNNLTLKGWPLTGLDQLRSGLLQQPKPFIQAAPQPFHQLQMLPQHQQQ 345
Query: 357 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 416
LLLAQQ+LTSP SDESRR RMLLNNR+M+LGKDG SNS+GDV NVGSPL G +LPR
Sbjct: 346 LLLAQQSLTSP-PSDESRRLRMLLNNRNMNLGKDGPSNSIGDV-PNVGSPLQPGCAVLPR 403
Query: 417 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSS--------NHNLHQQD 468
GDT+ML+KLKMAQMH QQQQQQQQQQ ++ PQQ Q + NHN+HQQD
Sbjct: 404 GDTEMLMKLKMAQMHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQSSNHNMHQQD 463
Query: 469 KMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 528
KMG AGS+T+DGSMSNSFRGNDQ SKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP
Sbjct: 464 KMGGAGSITVDGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 523
Query: 529 STPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRL 588
STPSTHTPGDVISMPALPHSG++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+ADMDR
Sbjct: 524 STPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADMDRF 583
Query: 589 VEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK 648
VEDGSLDDNVESFLSHDDTDPRD GR MDVS+GF+F E +SVRAS SKVICCHFSSDGK
Sbjct: 584 VEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKVICCHFSSDGK 643
Query: 649 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708
LLA+GGHDKKAVLW+TDTLK+KT LEEHS LITDVRFSPSMPRLATSSFDKTVRVWDAD+
Sbjct: 644 LLASGGHDKKAVLWYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFDKTVRVWDADS 703
Query: 709 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 768
YSLRTF GHSASVMSLDFHPN+DDLICSCDGDGEIRYW+I NGSC RVFKGGTAQMRF
Sbjct: 704 TSYSLRTFTGHSASVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARVFKGGTAQMRF 763
Query: 769 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVW 828
QP GRYLAAAAENVVSILD ETQACR SLQGHTKPI SVCWDPSGE LASVSEDSVRVW
Sbjct: 764 QPRHGRYLAAAAENVVSILDVETQACRHSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVW 823
Query: 829 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 888
T+GSG+EGECVHELSCNGNKFHSCVFHPTY SLLVIGCYQSLELWNMSENKTMTL+AH+G
Sbjct: 824 TLGSGNEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDG 883
Query: 889 LIAALAVSTETGYVASASHDKFVKLWK 915
LIAALAVST +G VASASHDK VKLWK
Sbjct: 884 LIAALAVSTVSGLVASASHDKIVKLWK 910
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1349 bits (3492), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 745/969 (76%), Positives = 798/969 (82%), Gaps = 82/969 (8%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQ Q QQ Q Q QQ Q QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
Q RHAQQQQQ QQ QQ Q Q QQ QQQQ RD HLLNG
Sbjct: 121 LLMQ---------RHAQQQQQQQQHQQQPQSQPQQ--------PQPQQQQNRDRTHLLNG 163
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
+ NGL GN P TANA+AT+MYEE+LK P RDSLDDAAMKQRFGENMGQLLDPN
Sbjct: 164 SANGLAGN-------PATANAIATKMYEERLKGPPQRDSLDDAAMKQRFGENMGQLLDPN 216
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGST---PSEINPVLNPRAAGPE 297
HAS +KSAAA GQPSGQVLHGTAGGMSPQVQARSQQLPGST SEINPVLNPRAAGPE
Sbjct: 217 HASILKSAAAGGQPSGQVLHGTAGGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPE 276
Query: 298 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 356
GSL+GI GSNQG NNLTLKGWPLTGLE LRSGLLQQQKP++QAPQPFHQ+QMLTPQHQQ
Sbjct: 277 GSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQ 336
Query: 357 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 416
L+LAQQ+L SPSAS+ESRR RMLLNNR++ L KDGLSN GD++SNVGSPL GG PR
Sbjct: 337 LMLAQQSLASPSASEESRRLRMLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPR 396
Query: 417 GDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ-----HTLSNQQSQSSNHNLHQQDKMG 471
GDTDML+KLK+AQ+ QQQQQQQ QQQ + N QQ H LSNQQSQ+SNH++HQQDK+G
Sbjct: 397 GDTDMLMKLKLAQLQQQQQQQQHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVG 456
Query: 472 PAG-SVTLDGSMSNSFRGNDQ--------------------------------------- 491
G SVT+DGSMSNS+RGNDQ
Sbjct: 457 GGGGSVTMDGSMSNSYRGNDQIKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSP 516
Query: 492 -----VSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALP 546
VSKNQ GRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGD +SMPALP
Sbjct: 517 IFAIVVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALP 576
Query: 547 HSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD 606
H+ ++SKPLMMF TDG GTLTSPSNQLWDDKDLEL+AD+DR V+DGSLDDNVESFLS DD
Sbjct: 577 HNSSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDD 636
Query: 607 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT 666
TDPRD GR MDVS+GF+F + NSVRAS+SK+ CCHFSSDGKLLA+GGHDKKAV+W+ D+
Sbjct: 637 TDPRDPVGRCMDVSKGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADS 696
Query: 667 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 726
LK K LEEHS+LITDVRFS SMPRLATSSFDKTVRVWD DNPGYSLRTF GHS SVMSL
Sbjct: 697 LKQKAILEEHSALITDVRFSASMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSL 756
Query: 727 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 786
DFHPNKDDLICSCDGDGEIRYWSINNGSC RV KGGT QMRFQP LGRYLAAAAEN+VSI
Sbjct: 757 DFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSI 816
Query: 787 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG 846
LD ETQACR SL+GHTK IDSVCWDPSGELLASVSEDSVR+WT+ EGECVHELSCNG
Sbjct: 817 LDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRIWTL----EGECVHELSCNG 872
Query: 847 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 906
+KFHSCVFHPT+PSLLVIGCYQSLELWNM+ENKTMTL+AH+GLI ALAVST G VASAS
Sbjct: 873 SKFHSCVFHPTFPSLLVIGCYQSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASAS 932
Query: 907 HDKFVKLWK 915
HDKF+KLWK
Sbjct: 933 HDKFIKLWK 941
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1349 bits (3491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 727/923 (78%), Positives = 799/923 (86%), Gaps = 31/923 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTP---SEINPVLNPRAAGPE 297
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTP +EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 298 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 356
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQHQQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 357 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 416
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 417 GD-TDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ--HTLSNQQSQSSNHNLHQQDKMGPA 473
GD TDM++K+KMAQ+ QQQQQQQ QQ Q HTLSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGA 457
Query: 474 GSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 533
GSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 534 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 592
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQLWDDK+LEL+ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDG 577
Query: 593 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 652
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 578 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 637
Query: 653 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 712
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 638 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 697
Query: 713 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 772
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFKGGT MRFQP L
Sbjct: 698 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRL 757
Query: 773 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 832
GRY +A +N+V+I D ETQA SL+GHTK + S+CWDPSGE LASVSEDSVRVWT+ S
Sbjct: 758 GRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLAS 817
Query: 833 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 892
G+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMTL+AHEGL+++
Sbjct: 818 GNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSS 877
Query: 893 LAVSTETGYVASASHDKFVKLWK 915
LAVS +G VASASHD+F+KLWK
Sbjct: 878 LAVSAASGLVASASHDRFIKLWK 900
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1347 bits (3487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 726/923 (78%), Positives = 798/923 (86%), Gaps = 31/923 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTP---SEINPVLNPRAAGPE 297
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTP +EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 298 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 356
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQHQQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 357 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 416
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 417 GD-TDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ--HTLSNQQSQSSNHNLHQQDKMGPA 473
GD TDM++K+KMAQ+ QQQQQQQ QQ Q H LSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGA 457
Query: 474 GSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 533
GSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 534 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 592
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQLWDDK+LEL+ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDG 577
Query: 593 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 652
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 578 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 637
Query: 653 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 712
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 638 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 697
Query: 713 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 772
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFKGGT MRFQP L
Sbjct: 698 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRL 757
Query: 773 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 832
GRY +A +N+V+I D ETQA SL+GHTK + S+CWDPSGE LASVSEDSVRVWT+ S
Sbjct: 758 GRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLAS 817
Query: 833 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 892
G+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMTL+AHEGL+++
Sbjct: 818 GNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSS 877
Query: 893 LAVSTETGYVASASHDKFVKLWK 915
LAVS +G VASASHD+F+KLWK
Sbjct: 878 LAVSAASGLVASASHDRFIKLWK 900
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563834|ref|XP_003550163.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1334 bits (3453), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 755/926 (81%), Positives = 800/926 (86%), Gaps = 34/926 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQ QQQ Q Q QQQQQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQGQQQPQPQ-KLQHQQQQQ 119
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR----RDGAH 176
QQQ +QMQQILLQR QQQQQ QQQ QQQQQ QQQ QQ QQQ QQQQQ RD AH
Sbjct: 120 QQQHMQMQQILLQRAQQQQQQQQQQQQQQQQPQQQQQQQQPQQQHQQQQQPQQQGRDRAH 179
Query: 177 LLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL 236
LLNG TNGL+GN P TANA+AT+MYEE+LKLP+ RDSL+DAAMKQRFG+ Q+
Sbjct: 180 LLNGGTNGLVGN-------PSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGD---QI 229
Query: 237 LDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTP---SEINPVLNPRA 293
LDPNHAS +KS+AATGQPSGQVLHG AG MSPQVQARSQQLPGSTP SEINPVLNPRA
Sbjct: 230 LDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRA 289
Query: 294 AGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQIQMLTP 352
AGPEGSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQ FHQ+ MLTP
Sbjct: 290 AGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTP 349
Query: 353 QHQQ-LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGG 411
QHQQ L+LAQQNL SPSASD+SRR RMLLNNR+M + KDGLSN VGD+VSNVGSPL AGG
Sbjct: 350 QHQQQLMLAQQNLASPSASDDSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAGG 409
Query: 412 HLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMG 471
PR DTDML+KLK+AQ Q QQQQ QQHTLSNQQSQ+SNH++HQQDKMG
Sbjct: 410 PAFPRSDTDMLMKLKLAQ--LQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMG 467
Query: 472 PAGS--VTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPS 529
G V +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPSSAPS
Sbjct: 468 GGGGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPS 526
Query: 530 TPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLV 589
TPSTHTPGDV+SMP LPHSG++SKPLMMF DGAGTLTSPSNQL AD+DR V
Sbjct: 527 TPSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQL---------ADVDRFV 577
Query: 590 EDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKL 649
EDGSLDDNVESFLS DDTD RD GR MDVS+GF+F E NSVRAST+KV CCHFSSDGKL
Sbjct: 578 EDGSLDDNVESFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKL 637
Query: 650 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 709
LA+GGHDKKAVLW TD+LK K LEEH+SLITDVRFSPSMPRLATSS DKTVRVWD +NP
Sbjct: 638 LASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENP 697
Query: 710 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 769
GYSLRTF GHS+ VMSLDFHPNKDDLICSCD DGEIRYWSINNG+C RV KGG QMRFQ
Sbjct: 698 GYSLRTFTGHSSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSKGGAVQMRFQ 757
Query: 770 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWT 829
P LGRYLAAAAENVVSILD ETQA R SL+GHTK I SVCWDPSGE LASVSEDSVRVWT
Sbjct: 758 PRLGRYLAAAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSVRVWT 817
Query: 830 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGL 889
+GSGSEGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+AHEGL
Sbjct: 818 LGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGL 877
Query: 890 IAALAVSTETGYVASASHDKFVKLWK 915
IAALAVST G VASASHDKFVKLWK
Sbjct: 878 IAALAVSTVNGLVASASHDKFVKLWK 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1323 bits (3424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/923 (77%), Positives = 789/923 (85%), Gaps = 40/923 (4%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKA+AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKHS+VAASYIETQLIKAREQQQ QQQQQQQ Q QQQQ Q
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQH----------- 109
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
MQ +L+QRHAQQQQQ QQQ Q QQQQQ Q Q QQQ QQQQQRRDGA LLNG
Sbjct: 110 ------MQMLLMQRHAQQQQQQQQQQQHQQQQQPQ---QQQQQSQQQQQQRRDGAQLLNG 160
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
++NG +GND LMRQNPG+ NA+AT+MYE++LKLP+ RDSLDD AMKQR+G+N+GQLLDPN
Sbjct: 161 SSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDGAMKQRYGDNVGQLLDPN 220
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTP---SEINPVLNPRAAGPE 297
HAS +KSAAAT Q SGQVLHG+ GGMSPQVQ RSQQLPGSTP +EINPVLNPRAAGPE
Sbjct: 221 HASILKSAAATSQSSGQVLHGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPE 280
Query: 298 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQ- 356
GSLMGIPGSN GGNNLTLKGWPLTGL+ LRSG+LQQQKPFIQAPQ F Q+QMLTPQHQQ
Sbjct: 281 GSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQ 340
Query: 357 LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPR 416
L+LAQQNLTSPS +D+ RR RMLLN R + KDGLSNSVGDVV NVGSPL AG LLPR
Sbjct: 341 LMLAQQNLTSPSVNDDGRRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPR 397
Query: 417 GD-TDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ--HTLSNQQSQSSNHNLHQQDKMGPA 473
GD TDM++K+KMAQ+ QQQQQQQ QQ Q H LSNQQSQSSNHN+HQQ+K+G A
Sbjct: 398 GDNTDMILKIKMAQLQQQQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGA 457
Query: 474 GSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 533
GSVT+DGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST
Sbjct: 458 GSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPST 517
Query: 534 HTPGDVISMPALPHSGTTSKPL-MMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDG 592
HTPGD ISMPALPHSG++SKPL MMF +DG GT TSPSNQL ADMDR VEDG
Sbjct: 518 HTPGDAISMPALPHSGSSSKPLTMMFNSDGTGTFTSPSNQL---------ADMDRYVEDG 568
Query: 593 SLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLAT 652
SLDDNV+SFLSHDD DPRD GR MD S+GF+F E NSVRASTSKV CHFSSDGKLL +
Sbjct: 569 SLDDNVDSFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVS 628
Query: 653 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 712
GGHDKKAVLW+T+ LK KT+LEEH++++TDVRFSPSMPRLATSSFD+TVRVWDADN YS
Sbjct: 629 GGHDKKAVLWYTENLKPKTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYS 688
Query: 713 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 772
LRTF GHSASVMSLDFHP KDD ICSCDGDGEIRYW+I NGSC VFKGGT MRFQP L
Sbjct: 689 LRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRL 748
Query: 773 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 832
GRY +A +N+V+I D ETQA SL+GHTK + S+CWDPSGE LASVSEDSVRVWT+ S
Sbjct: 749 GRYFSAVVDNIVTIFDVETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLAS 808
Query: 833 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAA 892
G+EGE +HELSCNGNKFHSCVFHPTY +LLVIGCY+SLELWN +ENKTMTL+AHEGL+++
Sbjct: 809 GNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSS 868
Query: 893 LAVSTETGYVASASHDKFVKLWK 915
LAVS +G VASASHD+F+KLWK
Sbjct: 869 LAVSAASGLVASASHDRFIKLWK 891
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552537|ref|XP_003544623.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1321 bits (3420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 732/921 (79%), Positives = 790/921 (85%), Gaps = 34/921 (3%)
Query: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
DIFIARTNEKH S + I+ + + ++QQQQQQQ Q QQ Q QQQQQQQQ
Sbjct: 61 DIFIARTNEKH-----SEVAASYIETQLIKAREQQQQQQQPQPQQSQHQQQQQQQQQQQQ 115
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
QQ Q +L + QQQQQ QQQ QQ QQQQ Q PQ QQQP QQQQ RD AHLLNG
Sbjct: 116 QQHMQMQQILLQRAQQQQQQQQQQQQQQPQQQQLQQPQLQHQQQPPQQQQGRDRAHLLNG 175
Query: 181 NTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPN 240
TNGL+GN PGTANA+AT+MYEE+LKLP+ RDSL+DAAMKQR+G+ QLLDPN
Sbjct: 176 GTNGLVGN-------PGTANALATKMYEERLKLPLQRDSLEDAAMKQRYGD---QLLDPN 225
Query: 241 HASYIKSAAATGQPSGQVLHGTAGGMSPQVQARSQQLPGSTP---SEINPVLNPRAAGPE 297
HAS +KS+AATGQPSGQVLHG AG MS QVQARSQQLPGSTP SEINPVLNPRAA PE
Sbjct: 226 HASILKSSAATGQPSGQVLHGAAGAMSSQVQARSQQLPGSTPDIKSEINPVLNPRAAAPE 285
Query: 298 GSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKP-FIQAPQPFHQIQMLTPQHQQ 356
GSL+ +PGSNQG NNLTLKGWPLTGLE LRSGLLQQQKP FIQ+PQPFHQ+ MLTPQHQQ
Sbjct: 286 GSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQPFHQLPMLTPQHQQ 345
Query: 357 -LLLAQQNLTSPSASDESRRFRMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLP 415
L+LAQQNL SPSASD++RR RMLLNNR++ + KDGLSN VGD+VSN+GSPL AGG P
Sbjct: 346 QLMLAQQNLASPSASDDNRRLRMLLNNRNIGVTKDGLSNPVGDIVSNLGSPLQAGGPAFP 405
Query: 416 RGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQHTLSNQQSQSSNHNLHQQDKMGPAG- 474
R DTDML+KLK+AQ+ QQQ QQQQ QQHTLSNQQSQ+SNH++HQQDKMG G
Sbjct: 406 RSDTDMLMKLKLAQLQHQQQNANPQQQQL---QQHTLSNQQSQTSNHSMHQQDKMGGGGG 462
Query: 475 SVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTH 534
SV +DGSMSNSFRGNDQVSKNQTGRKRKQP +SSGPANSSGTANTAGPSPSSAPSTPSTH
Sbjct: 463 SVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPSTPSTH 521
Query: 535 TPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSL 594
TPGDV+SMPALPHSG++SKPLMMF DG+GTLTSPSNQL AD+DR VEDGSL
Sbjct: 522 TPGDVMSMPALPHSGSSSKPLMMFSADGSGTLTSPSNQL---------ADVDRFVEDGSL 572
Query: 595 DDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG 654
DDNVESFLSHDDTDPRD GR MDVS+GF+F E NSVRAST+KV+CCHFSSDGKLLA+GG
Sbjct: 573 DDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSSDGKLLASGG 632
Query: 655 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 714
HDKKAVLW TD+LK K LEEH+ LITDVRFSPSMPRLATSS+DKTVRVWD +NPGYSLR
Sbjct: 633 HDKKAVLWFTDSLKQKATLEEHAYLITDVRFSPSMPRLATSSYDKTVRVWDVENPGYSLR 692
Query: 715 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR 774
TF GHS+SVMSLDFHPNKDDLICSCD DGEIRYWSINNGSC RV KGGTAQMRFQP LGR
Sbjct: 693 TFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGR 752
Query: 775 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 834
YLAAAAENVVSILD ETQACR SL+GHTK I SVCWDPSGE LASVSEDSVRVWT+GSGS
Sbjct: 753 YLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGS 812
Query: 835 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALA 894
EGECVHELSCNGNKFHSCVFHPTY SLLV+GCYQSLELWNM+ENKTMTL+AHEGLIAALA
Sbjct: 813 EGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIAALA 872
Query: 895 VSTETGYVASASHDKFVKLWK 915
VST G VASASHDKFVKLWK
Sbjct: 873 VSTVNGLVASASHDKFVKLWK 893
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 915 | ||||||
| DICTYBASE|DDB_G0282189 | 579 | tupA "transcriptional represso | 0.395 | 0.625 | 0.293 | 9.4e-26 | |
| FB|FBgn0040066 | 361 | wds "will die slowly" [Drosoph | 0.300 | 0.761 | 0.262 | 2.4e-24 | |
| ASPGD|ASPL0000006214 | 434 | AN6385 [Emericella nidulans (t | 0.276 | 0.582 | 0.311 | 4.4e-24 | |
| TAIR|locus:2060560 | 554 | LIS "AT2G41500" [Arabidopsis t | 0.326 | 0.539 | 0.276 | 5.4e-24 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.290 | 0.195 | 0.294 | 8.2e-24 | |
| UNIPROTKB|Q8N136 | 415 | WDR69 "Outer row dynein assemb | 0.249 | 0.549 | 0.307 | 8.6e-24 | |
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.300 | 0.823 | 0.262 | 1.4e-23 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.291 | 0.797 | 0.265 | 2.8e-23 | |
| UNIPROTKB|Q0P593 | 415 | WDR69 "Outer row dynein assemb | 0.241 | 0.532 | 0.306 | 7.6e-23 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.262 | 0.779 | 0.275 | 1.6e-22 |
| DICTYBASE|DDB_G0282189 tupA "transcriptional repressor TUP1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 9.4e-26, Sum P(2) = 9.4e-26
Identities = 117/399 (29%), Positives = 183/399 (45%)
Query: 541 SMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVES 600
S P+L + P M G + +G S +N ++ +L + DM+ + E+ + E
Sbjct: 191 SFPSLSPLDSNRHPKEM-GNNMSGNSMSMNN---NNNNLNKKPDMEEVKEEDRRRHDTEM 246
Query: 601 FLSHDDTDPRD-AGGRGMDVSQGFSFKEANSVRASTSKVICC-HFSSDGKLLATGGHDKK 658
+ D G V + ++++ ++ V+CC +FS+DGK LATG + +
Sbjct: 247 SEENGKEKGTDWLVGYNPSVQTNLNIDLLHNLQHNS--VVCCVNFSNDGKYLATGCN-RS 303
Query: 659 AVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 713
A ++ DT K + S I V FSP LAT + DKTV+VWD
Sbjct: 304 AQIYDVDTGKKVHAFVDESEKDGDLYIRSVCFSPDGNYLATGAEDKTVKVWDIHTKKIQ- 362
Query: 714 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQM 766
TF GH + SLD+ + I S GD + + W I G C K G +
Sbjct: 363 HTFYGHELDIYSLDYSSD-GRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSV 421
Query: 767 RFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 824
P GR +AA + +N+V + DA+T +GH + SV + P G+ LAS S D S
Sbjct: 422 AMSPD-GRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKS 480
Query: 825 VRVWTV-GSGSEGECVHELSCNGNKFH--SCVFHPTYPSLLVIGCY-QSLELWNMSENKT 880
+++W + GS S C + NG+K S F P S L+ G +S++ W+ T
Sbjct: 481 LKLWDLSGSRSRSRC--RATFNGHKDFVLSVAFSPD-GSWLISGSKDRSVQFWDPRNGTT 537
Query: 881 -MTLTAHEGLIAALAVSTET---GYVASASHDKFVKLWK 915
M L H+ + ++A+S + G A+ S D +LWK
Sbjct: 538 HMMLQGHKNSVISVALSPKNNSHGVFATGSGDFRSRLWK 576
|
|
| FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 77/293 (26%), Positives = 139/293 (47%)
Query: 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 694
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 72 TKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVS 131
Query: 695 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 754
S DKT++VW+ G SL+T GHS V +F+P + +LI S D +R W + G
Sbjct: 132 GSDDKTLKVWELST-GKSLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGK 189
Query: 755 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 810
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 190 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 249
Query: 811 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF---HPTYPSLLVIGC 866
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+F T +V G
Sbjct: 250 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 305
Query: 867 YQSLE-LWNM-SENKTMTLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 915
++ +WN+ S+ L H + A +ASA+ +DK +KLWK
Sbjct: 306 EDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLWK 358
|
|
| ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 4.4e-24, P = 4.4e-24
Identities = 87/279 (31%), Positives = 137/279 (49%)
Query: 643 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 702
FS DG+LLA+G +D LW + K LE HSS + V FSP+ LA+ S D T++
Sbjct: 49 FSPDGRLLASGSNDTTIKLWDPASGGLKQTLEGHSSSVQSVAFSPNGQLLASGSSDTTIK 108
Query: 703 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 762
+W++ + T GHS V S+ F PN G++ W+ GS +G
Sbjct: 109 LWNSASDSLK-HTMEGHSDRVESVAFSPN-----------GQL--WNPAIGSLKHTIEGH 154
Query: 763 T---AQMRFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 818
+ + F P G+ LA+ +AE + + D+ T + +L GH+ + + + P G LLA
Sbjct: 155 SDWVLSVAFSPD-GQLLASGSAEKTIKLWDSATCGLKHTLGGHSNWVLPLVFSPDGRLLA 213
Query: 819 SVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS-LELWNMS 876
S S D+ +++W SGS H L + NK S F P LL G + ++LW+ +
Sbjct: 214 SGSNDATIKLWDPPSGS---LKHTLEGHSNKIESLAFSPN-GQLLASGSSDATIKLWDTA 269
Query: 877 ENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914
TL H ++ ++ S ++ + S S D +KLW
Sbjct: 270 TGSFRHTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLW 308
|
|
| TAIR|locus:2060560 LIS "AT2G41500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 88/318 (27%), Positives = 144/318 (45%)
Query: 610 RDAGGRGMDVSQGFSFKEANSVRASTSK------VICCHFSSDGKLLATGGHDKKAVLWH 663
RD MD ++ K A + S + C FS DGK+LAT LW
Sbjct: 224 RDDPDEDMDAETKWALKHAKHMALDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWE 283
Query: 664 TDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS 722
+ + L++H TDV FSP LAT+S D+T ++W D G L+TF GH
Sbjct: 284 MPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTD--GTLLQTFEGHLDR 341
Query: 723 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAA 779
+ + FHP+ + + D R W IN G+ + +G + + FQ +
Sbjct: 342 LARVAFHPS-GKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCG 400
Query: 780 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGEC 838
+++ + D T L QGH KP+ SV + P+G LAS ED+ R+W +
Sbjct: 401 LDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKS--- 457
Query: 839 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSE-NKTMTLTAHEGLIAALAVS 896
++ + + N + P L Y + +W+ + + +L HE +A+L ++
Sbjct: 458 LYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDIT 517
Query: 897 TETGYVASASHDKFVKLW 914
++ +A+ SHD+ +KLW
Sbjct: 518 ADSSCIATVSHDRTIKLW 535
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 8.2e-24, Sum P(2) = 8.2e-24
Identities = 82/278 (29%), Positives = 138/278 (49%)
Query: 643 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 702
FS DGK L +G +D +W T + L+ HS + + FSP LA+ S+D T+
Sbjct: 758 FSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVESLAFSPDGKLLASGSYDNTID 817
Query: 703 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 762
+WD+ G L+TF GH S+ S+ F P+ +L + D D I+ W + G +
Sbjct: 818 LWDSAT-GELLQTFEGHPHSIWSVAFAPDGKELASASD-DSTIKIWDLATGELQQTLDSH 875
Query: 763 TAQMR---FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 818
+ +R F P G+ LA+++ ++ + + + T + SL+G + + SV + P G+ LA
Sbjct: 876 SQSVRSVAFSPD-GKLLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLA 934
Query: 819 SVSE-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 877
S SE ++V++W +G E + L + S F P L +++LWN +
Sbjct: 935 SGSEKNTVKLWNPATG---ELLQTLEGHSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTT 991
Query: 878 NKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914
+ T H+ I A+A S + ++ S S D +KLW
Sbjct: 992 GELQQTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLW 1029
|
|
| UNIPROTKB|Q8N136 WDR69 "Outer row dynein assembly protein 16 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 8.6e-24, P = 8.6e-24
Identities = 74/241 (30%), Positives = 114/241 (47%)
Query: 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 688
++ R T++++C F+ L+ATG D A LW + L HS+ I + F+ S
Sbjct: 171 HTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTS 230
Query: 689 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRY 747
R+ T SFD TV VWDAD G + +GH A + S F N D LI + D +
Sbjct: 231 GDRIITGSFDHTVVVWDADT-GRKVNILIGHCAEISSASF--NWDCSLILTGSMDKTCKL 287
Query: 748 WSINNGSCTRVFKGGTAQMRFQ--PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKP 804
W NG C G ++ + G+ +A A+A+ I A T+ C L+GH
Sbjct: 288 WDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGE 347
Query: 805 IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 863
I + ++P G LL S+ + R+W G+C+ L + ++ SC F+ Y +V
Sbjct: 348 ISKISFNPQGNHLLTGSSDKTARIW---DAQTGQCLQVLEGHTDEIFSCAFN--YKGNIV 402
Query: 864 I 864
I
Sbjct: 403 I 403
|
|
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 77/293 (26%), Positives = 143/293 (48%)
Query: 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 694
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 695 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 754
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 105 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 755 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 810
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 811 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF---HPTYPSLLVIGC 866
P+G+ +LA+ ++++++W S+G+C+ +C+ N+ + C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTCHKNEKY-CIFANFSVTGGKWIVSGS 278
Query: 867 YQSLE-LWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 915
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 279 EDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 278 (102.9 bits), Expect = 2.8e-23, P = 2.8e-23
Identities = 76/286 (26%), Positives = 139/286 (48%)
Query: 643 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 702
FS DGK LA+ DK +W K + LE H I+D+ +S + ++S DKT++
Sbjct: 54 FSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIK 113
Query: 703 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 762
+WD ++ G ++T GH V + F+P + +LI S D +R W +N G CT++
Sbjct: 114 IWDVES-GKMVKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTKMISAH 171
Query: 763 TAQMRFQPHLGR----YLAAAAENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSGE-L 816
+ + H R ++ + + V I D T Q K + V + P+G+ +
Sbjct: 172 SDPVT-GVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFV 230
Query: 817 LASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP---TYPSLLVIGCYQSL-EL 872
LA ++++R+W+ + + C+ + + N+ + C+F T +V G +L +
Sbjct: 231 LAGTLDNTLRLWSYNNNKK--CLKTYTGHKNEKY-CIFSTFSVTCGKWIVTGSEDNLIYI 287
Query: 873 WNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 915
+N+ + + TL HE ++ +A +AS + D+ VK+WK
Sbjct: 288 YNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIWK 333
|
|
| UNIPROTKB|Q0P593 WDR69 "Outer row dynein assembly protein 16 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 287 (106.1 bits), Expect = 7.6e-23, P = 7.6e-23
Identities = 71/232 (30%), Positives = 112/232 (48%)
Query: 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 688
++ R T++++C F+ L+ATG D A LW + + L HS+ I + F+ S
Sbjct: 171 HTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTS 230
Query: 689 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRY 747
R+ T SFD TV VW+AD G + T +GH A + S F N D LI + D +
Sbjct: 231 GNRIITGSFDHTVTVWEADT-GRKVYTLIGHCAEISSAVF--NWDCSLILTGSMDKTCKL 287
Query: 748 WSINNGSCTRVFKGGTAQMRFQ--PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKP 804
W NG C G ++ + G+ +A A+A+ I A T+ C L+GH
Sbjct: 288 WDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGE 347
Query: 805 IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 855
I + ++P G LL S+ + R+W G+C+ L + ++ SC F+
Sbjct: 348 ISKISFNPQGNRLLTGSSDKTARIW---DAQTGQCLQVLEGHTDEIFSCAFN 396
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 70/254 (27%), Positives = 125/254 (49%)
Query: 670 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 729
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 70
Query: 730 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 786
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 71 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 787 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 845
D +T C +L H+ P+ +V ++ G L+ S S D + R+W SG +C+ L +
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDD 186
Query: 846 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETG-- 900
N S V F P +L +L+LW+ S+ K + T T H+ A + TG
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 246
Query: 901 YVASASHDKFVKLW 914
++ S S D V +W
Sbjct: 247 WIVSGSEDNLVYIW 260
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FUY2 | LEUNG_ARATH | No assigned EC number | 0.7453 | 0.8021 | 0.7883 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 915 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-64 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-47 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-40 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-32 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-30 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-28 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-27 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 2e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-15 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 9e-15 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 2e-14 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-14 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 8e-14 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 1e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-13 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 3e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-13 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 6e-13 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 2e-12 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-12 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-12 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 5e-12 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 6e-12 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 9e-12 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-11 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 2e-11 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 4e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 5e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 6e-11 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 8e-11 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 9e-11 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 1e-10 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 4e-10 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 4e-10 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 5e-10 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-09 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-09 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 3e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-09 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-08 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 1e-08 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 1e-08 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 2e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 2e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-08 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 3e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-08 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 5e-08 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 5e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 6e-08 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 6e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 7e-08 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 7e-08 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 7e-08 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 9e-08 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 9e-08 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 1e-07 | |
| PRK12757 | 256 | PRK12757, PRK12757, cell division protein FtsN; Pr | 1e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-07 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-07 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 1e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 2e-07 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 2e-07 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 3e-07 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 4e-07 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 4e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 4e-07 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 4e-07 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 4e-07 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 5e-07 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 5e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 5e-07 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 5e-07 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 5e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 6e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 7e-07 | |
| COG3264 | 835 | COG3264, COG3264, Small-conductance mechanosensiti | 7e-07 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 8e-07 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 8e-07 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 1e-06 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 1e-06 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-06 | |
| pfam03280 | 189 | pfam03280, Lipase_chap, Proteobacterial lipase cha | 1e-06 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 2e-06 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 2e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-06 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 4e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 4e-06 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 4e-06 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 5e-06 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 5e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 6e-06 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 6e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 7e-06 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 7e-06 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 8e-06 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 8e-06 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 9e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 9e-06 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 9e-06 | |
| pfam14282 | 106 | pfam14282, FlxA, FlxA-like protein | 1e-05 | |
| cd00261 | 110 | cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors | 1e-05 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 1e-05 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 1e-05 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-05 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 2e-05 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 2e-05 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 2e-05 | |
| pfam12118 | 261 | pfam12118, SprA-related, SprA-related family | 2e-05 | |
| pfam08513 | 27 | pfam08513, LisH, LisH | 2e-05 | |
| COG3115 | 324 | COG3115, ZipA, Cell division protein [Cell divisio | 2e-05 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 2e-05 | |
| pfam02050 | 122 | pfam02050, FliJ, Flagellar FliJ protein | 2e-05 | |
| pfam13388 | 422 | pfam13388, DUF4106, Protein of unknown function (D | 3e-05 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 3e-05 | |
| COG3115 | 324 | COG3115, ZipA, Cell division protein [Cell divisio | 3e-05 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 3e-05 | |
| pfam02050 | 122 | pfam02050, FliJ, Flagellar FliJ protein | 3e-05 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 3e-05 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 4e-05 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 4e-05 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 4e-05 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 4e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 5e-05 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 5e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 6e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 6e-05 | |
| PRK04239 | 110 | PRK04239, PRK04239, hypothetical protein; Provisio | 6e-05 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 7e-05 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 7e-05 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 7e-05 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 7e-05 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 7e-05 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 7e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-05 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 8e-05 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 8e-05 | |
| PRK04239 | 110 | PRK04239, PRK04239, hypothetical protein; Provisio | 8e-05 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 9e-05 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 1e-04 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 1e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-04 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 1e-04 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 1e-04 | |
| pfam12203 | 92 | pfam12203, HDAC4_Gln, Glutamine rich N terminal do | 1e-04 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 1e-04 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 1e-04 | |
| pfam05914 | 379 | pfam05914, RIB43A, RIB43A | 1e-04 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 1e-04 | |
| pfam10595 | 349 | pfam10595, UPF0564, Uncharacterized protein family | 1e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 2e-04 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 2e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-04 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 2e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 2e-04 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 2e-04 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 2e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 2e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 2e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 3e-04 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 3e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 3e-04 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 3e-04 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 3e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 3e-04 | |
| PRK06800 | 228 | PRK06800, fliH, flagellar assembly protein H; Vali | 3e-04 | |
| PRK00286 | 438 | PRK00286, xseA, exodeoxyribonuclease VII large sub | 4e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 4e-04 | |
| PRK14474 | 250 | PRK14474, PRK14474, F0F1 ATP synthase subunit B; P | 4e-04 | |
| COG1570 | 440 | COG1570, XseA, Exonuclease VII, large subunit [DNA | 4e-04 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 4e-04 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 4e-04 | |
| PRK10863 | 216 | PRK10863, PRK10863, anti-RNA polymerase sigma fact | 4e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-04 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 5e-04 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 5e-04 | |
| PRK11448 | 1123 | PRK11448, hsdR, type I restriction enzyme EcoKI su | 5e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 5e-04 | |
| PRK06800 | 228 | PRK06800, fliH, flagellar assembly protein H; Vali | 5e-04 | |
| COG1322 | 448 | COG1322, COG1322, Predicted nuclease of restrictio | 5e-04 | |
| TIGR02223 | 298 | TIGR02223, ftsN, cell division protein FtsN | 5e-04 | |
| pfam04684 | 508 | pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorga | 5e-04 | |
| PRK10350 | 145 | PRK10350, PRK10350, hypothetical protein; Provisio | 5e-04 | |
| pfam09831 | 177 | pfam09831, DUF2058, Uncharacterized protein conser | 5e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 6e-04 | |
| pfam04702 | 147 | pfam04702, Vicilin_N, Vicilin N terminal region | 6e-04 | |
| pfam07321 | 152 | pfam07321, YscO, Type III secretion protein YscO | 6e-04 | |
| PLN03029 | 222 | PLN03029, PLN03029, type-a response regulator prot | 7e-04 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 8e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 8e-04 | |
| smart00935 | 140 | smart00935, OmpH, Outer membrane protein (OmpH-lik | 8e-04 | |
| PRK11637 | 428 | PRK11637, PRK11637, AmiB activator; Provisional | 8e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 8e-04 | |
| pfam10956 | 104 | pfam10956, DUF2756, Protein of unknown function (D | 9e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.001 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 0.001 | |
| cd00261 | 110 | cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors | 0.001 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.001 | |
| PRK10920 | 390 | PRK10920, PRK10920, putative uroporphyrinogen III | 0.001 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 0.001 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| smart00935 | 140 | smart00935, OmpH, Outer membrane protein (OmpH-lik | 0.001 | |
| pfam10956 | 104 | pfam10956, DUF2756, Protein of unknown function (D | 0.001 | |
| COG0845 | 372 | COG0845, AcrA, Membrane-fusion protein [Cell envel | 0.001 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 0.001 | |
| pfam11932 | 250 | pfam11932, DUF3450, Protein of unknown function (D | 0.001 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 0.001 | |
| PRK05687 | 246 | PRK05687, fliH, flagellar assembly protein H; Vali | 0.001 | |
| COG5624 | 505 | COG5624, TAF61, Transcription initiation factor TF | 0.001 | |
| pfam07271 | 279 | pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | 0.001 | |
| PRK05733 | 172 | PRK05733, PRK05733, single-stranded DNA-binding pr | 0.001 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.002 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.002 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.002 | |
| COG2959 | 391 | COG2959, HemX, Uncharacterized enzyme of heme bios | 0.002 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.002 | |
| PRK01741 | 332 | PRK01741, PRK01741, cell division protein ZipA; Pr | 0.002 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 0.002 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.002 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.002 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 0.002 | |
| TIGR00237 | 432 | TIGR00237, xseA, exodeoxyribonuclease VII, large s | 0.002 | |
| PRK05733 | 172 | PRK05733, PRK05733, single-stranded DNA-binding pr | 0.002 | |
| cd12191 | 90 | cd12191, gal11_coact, gall11 coactivator domain | 0.002 | |
| cd10149 | 90 | cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich | 0.002 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 0.002 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 0.002 | |
| pfam01984 | 105 | pfam01984, dsDNA_bind, Double-stranded DNA-binding | 0.002 | |
| pfam01984 | 105 | pfam01984, dsDNA_bind, Double-stranded DNA-binding | 0.002 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.002 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.002 | |
| pfam11068 | 131 | pfam11068, DUF2869, Protein of unknown function (D | 0.002 | |
| pfam05044 | 908 | pfam05044, Prox1, Homeobox prospero-like protein ( | 0.002 | |
| pfam11180 | 192 | pfam11180, DUF2968, Protein of unknown function (D | 0.002 | |
| PRK10927 | 319 | PRK10927, PRK10927, essential cell division protei | 0.003 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.003 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.003 | |
| pfam03938 | 157 | pfam03938, OmpH, Outer membrane protein (OmpH-like | 0.003 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.003 | |
| PRK10350 | 145 | PRK10350, PRK10350, hypothetical protein; Provisio | 0.003 | |
| cd10149 | 90 | cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich | 0.003 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.003 | |
| cd10163 | 90 | cd10163, ClassIIa_HDAC9_Gln-rich-N, Glutamine-rich | 0.003 | |
| pfam14362 | 297 | pfam14362, DUF4407, Domain of unknown function (DU | 0.003 | |
| PRK01294 | 336 | PRK01294, PRK01294, lipase chaperone; Provisional | 0.003 | |
| TIGR02302 | 851 | TIGR02302, aProt_lowcomp, TIGR02302 family protein | 0.003 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.004 | |
| PRK10246 | 1047 | PRK10246, PRK10246, exonuclease subunit SbcC; Prov | 0.004 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.004 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.004 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.004 | |
| COG1322 | 448 | COG1322, COG1322, Predicted nuclease of restrictio | 0.004 | |
| PRK00191 | 84 | PRK00191, tatA, twin arginine translocase protein | 0.004 | |
| pfam06625 | 122 | pfam06625, DUF1151, Protein of unknown function (D | 0.004 | |
| pfam02948 | 174 | pfam02948, Amelogenin, Amelogenin | 0.004 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.004 | |
| TIGR03789 | 239 | TIGR03789, pdsO, proteobacterial sortase system Om | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 4e-64
Identities = 89/293 (30%), Positives = 147/293 (50%), Gaps = 16/293 (5%)
Query: 631 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 690
++ T V C FS DGKLLATG D +W +T + L+ H+ + DV S
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 691 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 750
LA+ S DKT+R+WD + G +RT GH++ V S+ F P+ ++ S D I+ W +
Sbjct: 65 YLASGSSDKTIRLWDLET-GECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDV 122
Query: 751 NNGSCTRVFKGGTAQ---MRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPID 806
G C +G T + F P G ++A++ + + + D T C +L GHT ++
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181
Query: 807 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 865
SV + P GE L S S D ++++W + S G+C+ L + N +S F P L+
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPD--GYLLAS 236
Query: 866 CY--QSLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915
++ +W++ + TL+ H + +LA S + +AS S D +++W
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 1e-47
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 8/210 (3%)
Query: 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 683
+ + ++ TS V FS DG++L++ DK +W +T K T L H+ + V
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141
Query: 684 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 743
FSP +A+SS D T+++WD G + T GH+ V S+ F P+ + L S DG
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKL-LSSSSDG 199
Query: 744 EIRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQ 799
I+ W ++ G C +G + F P G LA+ +E + + D T C +L
Sbjct: 200 TIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLS 258
Query: 800 GHTKPIDSVCWDPSGELLASVSED-SVRVW 828
GHT + S+ W P G+ LAS S D ++R+W
Sbjct: 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 156 bits (393), Expect = 1e-40
Identities = 89/300 (29%), Positives = 136/300 (45%), Gaps = 18/300 (6%)
Query: 631 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRF-SP 687
+R + FS DG+LL +G D LW D K+ H S ++ + SP
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 688 SMPRLAT--SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 745
+ SS D TV++WD PG +RT GHS SV SL F P+ L DG I
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180
Query: 746 RYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAE-NVVSILDAET-QACRLSLQG 800
+ W + G G T + F P G +A+ + + + D T + R +L G
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240
Query: 801 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 859
H+ + S + P G LLAS S D ++R+W + S S + LS + + S F P
Sbjct: 241 HSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSS--SLLRTLSGHSSSVLSVAFSPDGK 297
Query: 860 SLLVIGCYQSLELWNMSENK---TMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 915
L ++ LW++ K ++TL HEG +++L+ S + + S S D ++LW
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 1e-32
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 11/209 (5%)
Query: 712 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---F 768
RT GH+ V + F P+ L+ + GDG I+ W + G R KG T +R
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 769 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 827
+ +++ + + D ET C +L GHT + SV + P G +L+S S D +++V
Sbjct: 60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 828 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLTA 885
W V G+C+ L + + +S F P + + +++LW++ K + TLT
Sbjct: 120 WDV---ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTG 175
Query: 886 HEGLIAALAVSTETGYVASASHDKFVKLW 914
H G + ++A S + + S+S D +KLW
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-30
Identities = 68/210 (32%), Positives = 97/210 (46%), Gaps = 5/210 (2%)
Query: 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITD 682
+ K S + S + FS DG LLA+G D LW + S L HSS +
Sbjct: 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289
Query: 683 VRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 741
V FSP LA+ S D TVR+WD + S T GH V SL F P+ L+
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
Query: 742 DGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 799
DG IR W + G + +G + + F P + + + V + D T + +L
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
Query: 800 GHTKPIDSVCWDPSGELLASVSED-SVRVW 828
GHT + S+ + P G+ LAS S D ++R+W
Sbjct: 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 118 bits (295), Expect = 6e-28
Identities = 78/314 (24%), Positives = 136/314 (43%), Gaps = 26/314 (8%)
Query: 623 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEE 675
S + + K + LL+ G + +L + S L
Sbjct: 4 NSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG 63
Query: 676 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDF-HPNKD 733
H IT + FSP L + S D T+++WD DN +++ G H +SV L P+ +
Sbjct: 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123
Query: 734 DLICSC-DGDGEIRYWSINN-GSCTRVFKGGTA---QMRFQPHLGRYLAAAAE--NVVSI 786
++ + DG ++ W ++ G R +G + + F P G+ LA+ + + +
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKL 182
Query: 787 LDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVH-ELS 843
D T +L GHT P+ S+ + P G L+AS S D ++R+W + S G+ + LS
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL---STGKLLRSTLS 239
Query: 844 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMTLTAHEGLIAALAVSTETGY 901
+ + S F P L ++ LW++ + TL+ H + ++A S +
Sbjct: 240 GHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298
Query: 902 VASASHDKFVKLWK 915
+AS S D V+LW
Sbjct: 299 LASGSSDGTVRLWD 312
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (287), Expect = 6e-27
Identities = 78/287 (27%), Positives = 115/287 (40%), Gaps = 48/287 (16%)
Query: 634 STSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPR 691
T V FS DG L+A+G D LW T K + L HS + FSP
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSL 255
Query: 692 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 751
LA+ S D T+R+WD + LRT GHS+SV+S+ F P+ L S DG +R W +
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA-SGSSDGTVRLWDLE 314
Query: 752 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 811
G L+L+GH P+ S+ +
Sbjct: 315 TGKLLSS-------------------------------------LTLKGHEGPVSSLSFS 337
Query: 812 PSGELLA-SVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 869
P G LL S+D +R+W + G+ + L + S F P + +
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDL---RTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGSTDGT 393
Query: 870 LELWNMSENK-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915
+ LW++S L H + +L S + +AS S D ++LW
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-16
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 89 QQQQQQQQQQQQ---------QQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
Q Q Q + QQ ++QQ S + Q+Q Q+ + Q QQ + Q
Sbjct: 577 QGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQGGQGQGQP 636
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQ--QPQQQQQRRDGAHLLNG 180
Q QQ Q QQQ QQ Q Q +QQ R + G
Sbjct: 637 GQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGG 679
|
Length = 820 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 8e-15
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 683
+ K ++R + V FS DG LLA+G D +W T + L H++ +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267
Query: 684 RFSPSMPRLATSSFDKTVRVWD 705
+SP RLA+ S D T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 9e-15
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+ Q+Q Q+ +QQ QQ Q Q Q QQ QQ Q Q QQ QQ Q
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQ------------QQGQQGQGGQ 656
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQR 171
Q ++ QQ + + +Q+
Sbjct: 657 GGQGSLAER--QQALRDELGRQRGG 679
|
Length = 820 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-14
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ--QQQQQLQMQQILLQRHAQQQQQHQQ 144
+EQ Q+ +QQ QQ Q Q Q P QQ QQ Q QQ QQ Q Q A++QQ +
Sbjct: 612 QEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRD 671
Query: 145 QHQQQQQQQQQPPQQPQQQQPQ 166
+ +Q+ + +
Sbjct: 672 ELGRQRGGLPGMGGEAGEAARD 693
|
Length = 820 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-14
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
Query: 86 AREQQQQQQQQ----QQQQQQQQQQSQQPPHQQQQQQ-----QQQQQ-------QLQMQQ 129
A++ +Q QQ Q Q Q QS+ QQ + ++QQ LQ Q
Sbjct: 559 AQQLLEQLQQMMENLQVTQGGQGGQSEM---QQAMEGLGETLREQQGLSDETFRDLQEQF 615
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+QQ Q Q Q Q Q Q QQ Q QQ QQ Q G
Sbjct: 616 ---NAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGG 658
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 8e-14
Identities = 30/104 (28%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Query: 79 IETQLIKAREQQQQQ---QQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRH 135
Q + A Q Q Q QQ QQ Q P QQ Q Q QQ +
Sbjct: 215 QPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274
Query: 136 A---QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q Q Q Q PPQQPQ QQ Q +
Sbjct: 275 QPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGP 318
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-13
Identities = 32/137 (23%), Positives = 44/137 (32%), Gaps = 46/137 (33%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQ----------------------------- 114
++ +Q Q+ QQ Q Q S + Q
Sbjct: 509 MRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQLLEQLQQ 568
Query: 115 -----QQQQQQQQQQLQMQQIL--LQRHAQQQQ----------QHQQQHQQQQQQQQQPP 157
Q Q Q Q +MQQ + L ++QQ Q Q Q+ +QQ QQ
Sbjct: 569 MMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQ 628
Query: 158 QQPQQQQPQQQQQRRDG 174
Q QP QQ Q+ G
Sbjct: 629 GGQGQGQPGQQGQQGQG 645
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-13
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 1/102 (0%)
Query: 72 SEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQL-QMQQI 130
S+ A + + QQ Q QQ QPP QQQQ Q Q Q Q Q
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPT 283
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q Q QQ Q Q QQ+ PQ ++Q
Sbjct: 284 PHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLV 325
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 1e-13
Identities = 25/104 (24%), Positives = 28/104 (26%), Gaps = 12/104 (11%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ-- 147
Q Q Q QQPP QQ Q QQ+ QQQQ Q Q Q
Sbjct: 220 LPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP--QQQQQPPQPQAQPP 277
Query: 148 --------QQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTN 183
Q Q P P QQ ++
Sbjct: 278 PQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFR 321
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-13
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
EQQ QQ Q Q Q Q QQ QQ Q QQQ QQ Q Q L +R + + +Q
Sbjct: 619 RGEQQGQQGQGGQGQGQPGQQGQQG--QGQQQGQQGQGGQGGQGSLAERQQALRDELGRQ 676
Query: 146 HQQQQQQQQQPPQQPQQ 162
+ + +
Sbjct: 677 RGGLPGMGGEAGEAARD 693
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-13
Identities = 28/83 (33%), Positives = 30/83 (36%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+ QQ +Q Q Q P Q Q QQ Q L QQ QQ
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQP 246
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQ 169
Q QQ PP PQ Q QQQ
Sbjct: 247 QFPGLSQQMPPPPPQPPQQQQQP 269
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-13
Identities = 23/88 (26%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ Q +Q Q QQ Q QQ LQ Q Q
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP 263
Query: 146 HQQQQ---QQQQQPPQQPQQQQPQQQQQ 170
QQQQ Q Q PPQ P Q
Sbjct: 264 QQQQQPPQPQAQPPPQNQPTPHPGLPQG 291
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 6e-13
Identities = 25/103 (24%), Positives = 32/103 (31%)
Query: 73 EVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL 132
++ +E QL + ++ Q Q QQ Q Q QQ +Q Q
Sbjct: 153 MLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPE 212
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
Q QQ Q Q Q PQQP Q Q
Sbjct: 213 QVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQM 255
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 2e-12
Identities = 39/82 (47%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q Q QQQ Q QQQQ Q Q QQQQQ QQQ Q QQQQ Q Q
Sbjct: 207 QGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADA---QAQMGQQQQGQGGMQP 263
Query: 149 QQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q Q QQQ PQQQ Q
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQ 285
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-12
Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q QQ +Q Q Q +Q Q QQ Q Q Q Q
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPA---QPPLPPQLPQQPPPL 243
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQRR 172
QQ Q Q P QQQ++
Sbjct: 244 QQPQFPGLSQQMPPPPPQPPQQQQQ 268
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-12
Identities = 32/155 (20%), Positives = 46/155 (29%), Gaps = 49/155 (31%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ-------------- 133
QQ QQ Q QQQ QQ Q Q ++QQ + +L Q+ L
Sbjct: 636 PGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAARDAL 695
Query: 134 -------RHAQQ---------------------QQQHQQQHQQQQQQQQQPPQQPQQQQP 165
A++ ++ + + QQQ Q QQQ
Sbjct: 696 GRAGRAMGGAEEALGQGDLAEAVDRQGRALEALREGARALGEAMAQQQGQQQGGQGQQQG 755
Query: 166 QQQQQRRD-------GAHLLNGNTNGLLGNDSLMR 193
+Q RD G G+ + G R
Sbjct: 756 RQGGNGRDPLGRPRGGQGPDGGDRVKVPGEIDYQR 790
|
Length = 820 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (171), Expect = 5e-12
Identities = 40/85 (47%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
QQ QQ QQQ QQ QQ P Q QQ QQ Q Q QQ Q Q Q QQ
Sbjct: 752 VQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 811
Query: 148 QQQQQQQQPPQ----QPQQQQPQQQ 168
Q Q QQP Q QPQ QQPQQ
Sbjct: 812 APQPQYQQPQQPVAPQPQYQQPQQP 836
|
Length = 1355 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 6e-12
Identities = 19/76 (25%), Positives = 43/76 (56%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+QQQQ+ ++ ++Q+++++ QQ QQ+Q +Q++ Q+++ L Q++Q +
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
Query: 147 QQQQQQQQQPPQQPQQ 162
Q +Q+Q +
Sbjct: 126 QAALKQKQAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 9e-12
Identities = 22/82 (26%), Positives = 24/82 (29%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q QQ Q QQ Q Q Q Q Q L Q QQ
Sbjct: 246 PQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLL 305
Query: 149 QQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q Q+ Q + Q Q
Sbjct: 306 PLVQQPQGQQRGPQFREQLVQL 327
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-11
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP--HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
+++ Q QQQQQ Q QPP +Q Q Q Q Q
Sbjct: 252 SQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQP 311
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
Q Q+ Q ++Q Q QQQ+ Q+
Sbjct: 312 QGQQRGPQFREQLVQLSQQQREALSQEE 339
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 2e-11
Identities = 24/118 (20%), Positives = 61/118 (51%)
Query: 55 WWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQ 114
W S+ I + S + A ++ + + + Q QQ ++ +QQ++ ++ +
Sbjct: 31 WGSLDETIEASGGGGGGSVIDAVMVDPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAE 90
Query: 115 QQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + +Q +Q +++Q+ +R Q+QQ Q + ++Q Q +Q Q+ Q ++ +Q+++
Sbjct: 91 ELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKK 148
|
Length = 387 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 4e-11
Identities = 42/109 (38%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ Q A +QQ QQ QQ Q Q QQ QQP Q Q QQ QQ Q + QQ
Sbjct: 754 QPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQ---YQQPQQP 810
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL---NGNTNGL 185
Q Q+QQ QQ PQ Q QQP Q + H L NG++ L
Sbjct: 811 VAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPL 859
|
Length = 1355 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 5e-11
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+Q +QQQQQ+ ++ + Q+ +QQQ ++ QQ+Q Q+ L Q ++ +Q+ Q +
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAE 121
Query: 150 QQQQQQPPQQPQQQQPQQQQ 169
+ +Q +Q Q ++ +
Sbjct: 122 EAAKQAALKQKQAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 6e-11
Identities = 22/84 (26%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
+Q +QQQQQ+ +++++ Q+++++QQQ ++LQ +Q Q +Q ++ + Q+Q++
Sbjct: 62 EQYNRQQQQQKSAKRAEE---QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKK 118
Query: 152 QQQQPPQQPQQQQPQQQQQRRDGA 175
Q ++ +Q +Q Q ++ A
Sbjct: 119 QAEEAAKQAALKQKQAEEAAAKAA 142
|
Length = 387 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 8e-11
Identities = 18/85 (21%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+Q +QQQQQ+ ++ ++ ++ QQQ ++ QQ+Q + ++ L++ +++ Q+Q +Q
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQER--LKQLEKERLAAQEQKKQ 119
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRD 173
++ +Q + +Q + +
Sbjct: 120 AEEAAKQAALKQKQAEEAAAKAAAA 144
|
Length = 387 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 65.0 bits (157), Expect = 9e-11
Identities = 46/103 (44%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQ--QSQQPPHQQQQQQQQQQQQLQMQ---QILLQR 134
+ ++ EQQ+QQQ Q QQQQQQ Q QQ QQQQQ Q QQ QM Q Q
Sbjct: 338 QEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGGQFATQA 397
Query: 135 HAQQQQQHQQQH---QQQQQQQQQPPQQPQQQQPQQQQQRRDG 174
H Q QH Q+Q Q QQQ Q QQ Q Q QQ + G
Sbjct: 398 HQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHG 440
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 1e-10
Identities = 57/228 (25%), Positives = 75/228 (32%), Gaps = 6/228 (2%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQ-QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
++ + Q QQQQ Q QQQ Q Q QQ QQQ Q Q Q QQ
Sbjct: 204 GGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQP 263
Query: 137 QQQQQHQQQHQQQQQQQQQPPQQPQ-QQQPQQQQQRRDGAHLLNGNTNGLLGND-SLMRQ 194
QQ Q Q Q QQQ QQ PQQ Q P Q QQ G G G + Q
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323
Query: 195 NPGTANAMATRMYEEKLKL---PVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAAT 251
+++LK +R +Q+ G N +
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
Query: 252 GQPSGQVLHGTAGGMSPQVQARSQQLPGSTPSEINPVLNPRAAGPEGS 299
+ G GG+ + Q S+PS + V ++
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQ 431
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-10
Identities = 31/133 (23%), Positives = 43/133 (32%), Gaps = 45/133 (33%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ--MQQI-------------- 130
RE +Q +Q Q+ Q P Q + QQ LQ M +I
Sbjct: 502 REALDDYMRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQ 561
Query: 131 LLQ---------RHAQQQQQHQQQHQQQ----------QQ----------QQQQPPQQPQ 161
LL+ + Q Q Q + QQ QQ Q+Q Q+ +
Sbjct: 562 LLEQLQQMMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGE 621
Query: 162 QQQPQQQQQRRDG 174
QQ Q Q + G
Sbjct: 622 QQGQQGQGGQGQG 634
|
Length = 820 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 4e-10
Identities = 36/98 (36%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ-----QQQLQM-QQILLQR 134
Q +Q Q Q QQ Q QQ Q Q QQ QQ QM Q +
Sbjct: 145 GQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGG 204
Query: 135 HAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q Q Q Q Q QQQQ Q QQ Q QQ QQ Q++
Sbjct: 205 GGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQ 242
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
EQ+Q +Q Q +QQ Q + P+ +Q Q + QQ + Q Q
Sbjct: 83 EQRQLLEQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQIQQQ---AQQQQPPATTAQPQP 139
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQ 170
+Q P QPQ P + Q
Sbjct: 140 VTPPRQTTAPVQPQTPAPVRTQP 162
|
Length = 256 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-09
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 16/102 (15%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQP------------PHQQQQQQQQQQQQLQ----MQQ 129
A + + Q Q + Q Q Q +Q+ Q Q Q QQ L +Q
Sbjct: 129 APKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQ 188
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ +Q Q +Q PQQ Q Q
Sbjct: 189 AAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQP 230
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
+ + Q Q + Q Q P Q+ ++ + QLQ +Q Q QQ Q +Q
Sbjct: 129 APKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQ 188
Query: 151 Q--QQQQPPQQPQQQQPQQQQQRRDGAH 176
QQ PP+QP Q
Sbjct: 189 AAFPQQGPPEQPPGYPQPPQGHPEQVQP 216
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (147), Expect = 3e-09
Identities = 36/90 (40%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
Y + Q A + Q QQ QQ Q Q QQ QQP Q Q QQ QQ A
Sbjct: 765 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV-----------AP 813
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
Q Q Q Q Q Q Q PQQP QPQ
Sbjct: 814 QPQYQQPQQPVAPQPQYQQPQQPVAPQPQD 843
|
Length = 1355 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (142), Expect = 5e-09
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 636 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 695
S V+ FS DG+++++G D LW T NL+ H+S +T + FSP LA+
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430
Query: 696 SFDKTVRVWDADNPGYSL 713
S D T+R+WD S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448
|
Length = 466 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ- 147
Q + Q Q Q Q+ S + Q QQ+QQ Q Q Q +L + +Q Q
Sbjct: 137 PQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGP 196
Query: 148 -QQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q QPPQ +Q QQ
Sbjct: 197 PEQPPGYPQPPQGHPEQVQPQQFLPAPSQ 225
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 1e-08
Identities = 69/438 (15%), Positives = 108/438 (24%), Gaps = 68/438 (15%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q + Q Q Q Q Q QQ Q Q Q AQ Q Q QQ
Sbjct: 133 HQMSRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQ------AQGQAGGMNQGQQG 186
Query: 150 QQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEE 209
QQQPPQ Q P Q + + PG +M ++
Sbjct: 187 PVGQQQPPQMGQPGMPGGGGQGQMQ-----------------QQGQPGGQQQQNPQMQQQ 229
Query: 210 KLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQ 269
+Q+ + G + QP
Sbjct: 230 LQN-----------QQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQ-------QMQGGQM 271
Query: 270 VQARSQQLPGSTPSEINPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPLRSG 329
QQ P P + G G G
Sbjct: 272 QVPMQQQPPQQQP---QQSQLGMLPNQMQQMPGGGQGGPGQP----------------MG 312
Query: 330 LLQQQKPFIQAPQPFHQIQMLTPQHQQLLLAQQNLTSPSASDESRRFRMLLNNRSMSLGK 389
Q+ + Q +++ QQL + + ++ + N+ + +
Sbjct: 313 PPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQ 372
Query: 390 DGLSNSVGDVVSNVGSPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQQQQQQQQQNSNPQQ 449
G + +G G + + M Q Q Q PQ
Sbjct: 373 MNQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQP 432
Query: 450 HTLSNQQSQSSNHNLHQQDKMGPAGSVTLDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSG 509
S S Q + G + ++ S S ++ VS G
Sbjct: 433 SVPSPGGPGS------QPPQSVSGGMIPSPPALMPSPSPQMSQSPASQRTIQQDMVSPGG 486
Query: 510 PANSSGTANTAGPSPSSA 527
P N+ G ++ SP++
Sbjct: 487 PLNTPG--QSSVNSPANP 502
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A Q +Q QQ + Q Q + +P Q QQ Q Q +Q L Q Q
Sbjct: 97 ASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQP---VSPQVAPA 153
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q Q Q Q +P Q
Sbjct: 154 PQPVHSAPQPAQQAFQPAEPVAAPQ 178
|
Length = 333 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 57.7 bits (138), Expect = 2e-08
Identities = 36/94 (38%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ-M 127
++ ++ + + Q + ++QQ QQQQQ Q QQ Q Q Q LQ M
Sbjct: 348 QRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQM 407
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQ 161
Q + LQ Q QQQ Q HQQ QQQ QQP Q Q
Sbjct: 408 QHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHGQ 441
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 2e-08
Identities = 26/69 (37%), Positives = 33/69 (47%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
+ QQ Q QQ + Q P QQ QQQ QQQ QQ Q AQQ Q +Q H
Sbjct: 197 HRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGH 256
Query: 147 QQQQQQQQQ 155
++ ++Q Q
Sbjct: 257 KRSREQGNQ 265
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-08
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 668 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 705
K L+ H+ +T V FSP LA+ S D TVRVWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 17/90 (18%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A+ ++Q+++++QQQ ++ QQ Q +Q++ +Q ++++L Q+ ++ A++ +
Sbjct: 74 AKRAEEQRKKKEQQQAEELQQKQAA--EQERLKQLEKERLAAQEQ--KKQAEEAAKQAAL 129
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
Q+Q ++ + + + + +R A
Sbjct: 130 KQKQAEEAAAKAAAAAKAKAEAEAKRAAAA 159
|
Length = 387 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-08
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 666 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 705
+ + L+ H+ +T V FSP LA+ S D T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 56.1 bits (134), Expect = 5e-08
Identities = 32/80 (40%), Positives = 41/80 (51%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q Q Q QQ + + QQQ+++MQ+I QR Q QHQQQ QQ+ QQQQ
Sbjct: 310 QSAPPPAMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQ 369
Query: 155 QPPQQPQQQQPQQQQQRRDG 174
QQ QQ QQ + +G
Sbjct: 370 MLLQQQQQMHQLQQHHQMNG 389
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 25/86 (29%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP-HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
AR Q Q Q Q +Q QQPP Q Q + Q Q + + Q +Q Q
Sbjct: 84 ARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQ 143
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q Q P Q QQ Q
Sbjct: 144 QPVSPQVAPAPQPVHSAPQPAQQAFQ 169
|
Length = 333 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 6e-08
Identities = 21/58 (36%), Positives = 25/58 (43%)
Query: 115 QQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ QQ Q QQ +Q AQQ QQ QQ Q QQ P QQ +Q +R
Sbjct: 201 PKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKR 258
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 6e-08
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
EQ Q +QQ Q + ++Q P Q+QQ Q+Q+Q Q+ + QR AQQ + +Q Q
Sbjct: 123 EQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQ--QRLAQQSRTTEQSWQ 180
Query: 148 QQQQ--QQQQPPQQPQQQQPQQQQQ 170
QQ + Q QP+Q +P QQ
Sbjct: 181 QQTRTSQAAPVQAQPRQSKPASTQQ 205
|
Length = 319 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 7e-08
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 94 QQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
+ + + QQ + Q P QQ Q QQ QQQ Q Q QQ
Sbjct: 195 HRHRHAPKPTQQPTVQNPAQQPTVQNPAQQP------------QQQPQQQPVQPAQQPTP 242
Query: 154 QQPPQQPQQQQPQQQQQRRDG 174
Q P QQP Q + ++ R G
Sbjct: 243 QNPAQQPPQTEQGHKRSREQG 263
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 7e-08
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ + + QQ Q +QQP Q QQ QQQ QQQ Q
Sbjct: 195 HRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQP-------------QQQPVQPAQQPT 241
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
Q QQPPQ Q + ++Q
Sbjct: 242 PQNPAQQPPQTEQGHKRSREQ 262
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (134), Expect = 7e-08
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 16/217 (7%)
Query: 634 STSKVICC-HFSSDGKLLATGGHDKKAVLWHTDTLKSK--------TNLEEHSSLITDVR 684
++S ++C F DG+ AT G +KK ++ +++ L S L
Sbjct: 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICW 540
Query: 685 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDG 743
S ++A+S+F+ V+VWD L T M H V S+D+ L+ S DG
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598
Query: 744 EIRYWSINNGSC--TRVFKGGTAQMRFQPHLGRYLA-AAAENVVSILDAETQACRL-SLQ 799
++ WSIN G T K ++F GR LA +A++ V D L ++
Sbjct: 599 SVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658
Query: 800 GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG 836
GH+K + V + S L++S +++++++W + G
Sbjct: 659 GHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695
|
Length = 793 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 9e-08
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ QQ Q+Q+Q QQ +QQ+ Q +Q QQQ + Q + Q + QQ
Sbjct: 147 EQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQP 206
Query: 146 HQQQQQQQQQPPQQPQQQQ 164
+Q Q Q + QQ
Sbjct: 207 YQDLLQTPAHTTAQSKPQQ 225
|
Length = 319 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 9e-08
Identities = 22/124 (17%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 50 GFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLI--KAREQQQQQQQQQQQQQQQQQQS 107
G L + + + I+ L+ A QQ + QQQ++ +++Q
Sbjct: 16 GLLI--LGSLY-----HSVKPEPGGGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQE 68
Query: 108 QQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
+Q +QQ ++ ++Q+ + + Q+ +Q+ ++ +Q +Q +Q ++ +Q + +
Sbjct: 69 RQKKLEQQAEEAEKQRAAEQAR---QKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK 125
Query: 168 QQQR 171
+Q
Sbjct: 126 AKQA 129
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 24/89 (26%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 88 EQQQQQQQQQQQQ-------QQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
EQ Q +QQ Q +Q Q + QQQ QQQQ Q Q
Sbjct: 89 EQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQ--------PQPV 140
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+Q Q Q P + Q P Q
Sbjct: 141 TPPRQTTAPVQPQTPAPVRTQPAAPVTQA 169
|
Length = 256 |
| >gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
TQL + +Q Q + Q QQQ QQQQ Q + Q Q
Sbjct: 100 TQLSEVPYNEQTPQVPRSTVQIQQQA------QQQQPPATTAQPQPVTPPRQTTAPVQPQ 153
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
Q Q + P+ + ++++QR
Sbjct: 154 TPAPVRTQPAAPVTQAVEAPKVEAEKEKEQR 184
|
Length = 256 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-07
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 794 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 828
+L+GHT P+ SV + P G LLAS S+D +VRVW
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-07
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 791 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 828
+ +L+GHT P+ SV + P G+ LAS S+D ++++W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 18/85 (21%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
R QQQ++ +++Q++Q++ QQ ++Q+ +Q +Q +++Q + +Q +Q
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAA--EKAAKQAEQA 110
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
+Q +++Q+Q + +Q + + +
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAK 135
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-07
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILLQRHAQQQQQHQ 143
+ R + +++ +Q++Q+ Q +++ Q ++ QQQQ+L Q LQR A +++
Sbjct: 273 QQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQR-ALERRLRL 331
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGN-----DSLMRQ 194
+ + ++ Q+ Q PQ++ + QQ+ L L ++L +Q
Sbjct: 332 AKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 10/94 (10%), Positives = 59/94 (62%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
E A E+++++++++++++ + +Q +++++Q++ +++LQ ++ + + +
Sbjct: 49 EERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERI 108
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q++ + + Q+++++Q++ ++ + ++ +++
Sbjct: 109 QEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 23/98 (23%), Positives = 32/98 (32%)
Query: 73 EVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL 132
EV + A+E + + Q Q Q +Q QQ + Q Q +
Sbjct: 65 EVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQP 124
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ +Q Q +Q QQ P P Q Q
Sbjct: 125 APQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQ 162
|
Length = 333 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 33/84 (39%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ--HQQQH 146
Q Q QQQQ Q Q P QQ Q QQ QQ Q Q QQ
Sbjct: 78 APQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQ 137
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q Q PQQ Q Q P QQ Q
Sbjct: 138 AQQPQPPPQVPQQQQYQSPPQQPQ 161
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 3e-07
Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A + QQ Q QQ Q Q P QQ QQQ Q Q Q Q+ Q +Q H++
Sbjct: 200 APKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRS 259
Query: 146 HQQQQQQ 152
+Q Q+
Sbjct: 260 REQGNQE 266
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 99 QQQQQQQQSQQPPHQQQQQ----QQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
QQ + Q Q + +QQ ++Q ++L+ +Q Q +Q ++ + + Q+QQ+Q +
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAE 121
Query: 155 QPPQQPQQQQPQQQQQRRDGA 175
+ +Q Q +Q QQ++Q R A
Sbjct: 122 EAEKQAQLEQKQQEEQARKAA 142
|
Length = 387 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 4e-07
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQ-QLQMQQILLQRHAQQQQ 140
+L +A ++ +Q++Q+ Q ++ + Q P QQQQ+ + Q ++Q+ L +R +Q
Sbjct: 275 RLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQ 334
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ ++ Q+ QQQ Q + QQ+ +Q +QR
Sbjct: 335 RLERLSQRLQQQNPQRRIERAQQRLEQLEQR 365
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 13/102 (12%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQ---------QSQQPPHQQQQQQQQQQQQLQMQQI 130
E + K RE + + QQ++ + ++++ Q + ++Q+++++ +++ + +Q
Sbjct: 175 ERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQE 234
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
L + +Q ++ +++ Q+++ +++ ++ ++Q + ++ +
Sbjct: 235 LQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQ 276
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 14/107 (13%), Positives = 52/107 (48%)
Query: 67 TNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ 126
++ + ++ +L + +E+ + Q+Q + QQ+ Q+ +Q + + ++ Q++L
Sbjct: 59 SDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELA 118
Query: 127 MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ L + +++++ ++ + +Q+ + + Q+ ++R
Sbjct: 119 RIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQRR 165
|
Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198 |
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-07
Identities = 22/81 (27%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQQHQQQQ 150
QQ Q P Q QQ + Q H Q QQ Q Q
Sbjct: 44 QQHPPTHTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQ 103
Query: 151 QQQQQPPQQPQQQQPQQQQQR 171
Q PQQP Q QP
Sbjct: 104 PLQPPQPQQPMQPQPPVHPIP 124
|
They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 5e-07
Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 17/101 (16%)
Query: 79 IETQLIKAREQQQQQQQQQQQQ----QQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQR 134
I++Q A++ +QQ++++++Q + +Q Q+ Q ++++ + Q+
Sbjct: 67 IQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQE----------- 115
Query: 135 HAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
QQ+Q + + Q Q +Q+QQ Q + Q+++ A
Sbjct: 116 --QQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKA 154
|
Length = 387 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 17/81 (20%), Positives = 25/81 (30%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q + Q Q QQ Q P Q QQ Q Q + QQ +
Sbjct: 115 PQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPV 174
Query: 148 QQQQQQQQPPQQPQQQQPQQQ 168
Q + P +P+++
Sbjct: 175 AAPQPEPVAEPAPVMDKPKRK 195
|
Length = 333 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-07
Identities = 12/89 (13%), Positives = 60/89 (67%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ +E+++ +++++Q+Q+ Q+ + +Q ++++ Q+++ ++ ++ +L++ A+ ++ Q+
Sbjct: 218 RQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQE 277
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++++ ++ + ++ +QQ +++++R
Sbjct: 278 NAEKRRMKRLEHRRELEQQIEEKEERRAA 306
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 86 AREQQQ--QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
RE+ + ++Q QQQ + ++ Q + + + Q +QQQ + +Q +Q QQ
Sbjct: 635 NREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEA 694
Query: 144 QQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ ++Q Q+ Q+ + QQ Q ++++R
Sbjct: 695 KALNVEEQSVQETEQEERVQQVQPRRKQR 723
|
Length = 1068 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 5e-07
Identities = 30/84 (35%), Positives = 57/84 (67%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
++Q +++QQQQ+Q+++ Q + QQ+ QQ + + + QQ +R+ ++QQQ Q+Q+Q
Sbjct: 38 KEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQ 97
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQR 171
+ QQ+ QQ Q+P++QQ Q++ R
Sbjct: 98 ECQQRCQQQEQRPRRQQQCQRECR 121
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 52.7 bits (125), Expect = 6e-07
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ + + Q + P H Q QQQ + +L QQ + + +QQ+Q Q HQ
Sbjct: 298 KSPMEAGGDRMPQSAPPPAMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQH 357
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
QQQQQQ+ QQ Q QQQ + H +NG
Sbjct: 358 QQQQQQEHQQQQMLLQQQQQMHQLQQHHQMNG 389
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 52.3 bits (124), Expect = 7e-07
Identities = 32/81 (39%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 89 QQQQQQQQQQQQQQQQ-------QQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QQQQQ Q QQ Q Q Q + QQ Q + Q+Q+Q QQ Q H Q QQQ
Sbjct: 373 QQQQQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQ 432
Query: 142 HQQQHQQQQQQQQQPPQQPQQ 162
HQQ Q Q P P
Sbjct: 433 HQQPAQHGQMGYGIPNGYPAH 453
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 25/119 (21%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ----------------QQ 123
E L +E ++Q++ + ++ + Q QQ+ Q
Sbjct: 28 EAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTERLNALASD 87
Query: 124 QLQMQQILLQ-----RHAQQQQQHQQ----QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q+ +LLQ R ++Q + + QQ P+ Q Q+ + Q RD
Sbjct: 88 DRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERD 146
|
Length = 835 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 8e-07
Identities = 31/88 (35%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ--QQQHQQ 144
REQQQ +++ ++Q +++QQQ +Q Q++ +Q QQ+ Q + + QQ ++++++
Sbjct: 28 REQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEK 87
Query: 145 QHQQQQQQQQQPPQ--QPQQQQPQQQQQ 170
+ QQQQ+Q Q+ Q Q Q+Q+P++QQQ
Sbjct: 88 EQQQQQRQYQECQQRCQQQEQRPRRQQQ 115
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 18/86 (20%), Positives = 43/86 (50%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
Q++K R+Q+ + Q +Q+QQ+ + ++Q+QQ +QQ+ M Q Q+Q
Sbjct: 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQH 90
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ + + + +Q ++++ +
Sbjct: 91 LLNEAREDVATARDEWLEQLEREKQE 116
|
Length = 250 |
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
Score = 51.9 bits (123), Expect = 1e-06
Identities = 36/94 (38%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ---QQH 142
A Q Q QQQ + + Q Q+ Q+ +QQ+QQQ Q QQ Q H QQQ QQ
Sbjct: 316 AMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQ 375
Query: 143 QQQHQQQQQQQQ----QPPQQPQQQQPQQQQQRR 172
QQ HQ QQ Q Q Q Q QQ +
Sbjct: 376 QQMHQLQQHHQMNGGGQFATQAHQHAAYLQQMQH 409
|
The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1. Length = 476 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ--QQQQQLQMQQILLQRHAQ--QQQQHQQQ 145
Q+ + + Q QPP+ Q +Q QQ + Q+ R AQ Q Q
Sbjct: 74 APANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPA 133
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQR 171
+Q Q +Q Q P PQ Q
Sbjct: 134 YQPQPEQPLQQPVSPQVAPAPQPVHS 159
|
Length = 333 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 16/97 (16%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I+ Q A +++Q++Q++ +QQ ++ ++ + +Q +Q++ +Q+ ++ Q
Sbjct: 55 IQQQKKPAAKKEQERQKKLEQQAEEAEKQRA---AEQARQKELEQRAAAEKAAKQAEQAA 111
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q ++Q Q ++ + +Q + + + + +++ ++ A
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEA 148
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 11/93 (11%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 82 QLIKAREQQQQ--QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+L +ARE+Q + +++ Q+++ +++ + ++ +Q + ++ +Q+ + +++ H ++
Sbjct: 234 ELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRREL 293
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+Q ++ ++++ +++ + ++ +++ +R+
Sbjct: 294 EQQIEEKEERRAAEREEELEEGERLREEEAERQ 326
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|217472 pfam03280, Lipase_chap, Proteobacterial lipase chaperone protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 30/114 (26%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL----------------- 131
Q +Q+ ++ +Q P ++ ++ QQ Q
Sbjct: 72 QDPSLSDEQKARRLAALIAQLPEDLREARRNAALQQELAQATAQLQAQGASPQDLRAARA 131
Query: 132 ----------LQRHAQQQQQHQQQHQQQQQQQQQ---PPQQPQQQQPQQQQQRR 172
L + Q++ QQ++ ++ Q +Q Q Q R+
Sbjct: 132 ALVGPEAAQRLAQLDQERAAWQQRYDDYLAERDQILAAGLSDADKQAQIAQLRQ 185
|
Length = 189 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 2e-06
Identities = 32/116 (27%), Positives = 39/116 (33%), Gaps = 14/116 (12%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
+ + Q +K + + + QQQ QQQQQQQ P QQQ QQ Q QM
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383
Query: 128 Q--QILLQRHAQQQQQHQQQHQ------------QQQQQQQQPPQQPQQQQPQQQQ 169
L + Q Q Q Q Q PQ PQ P
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGG 439
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
TQL++ +Q +Q+QQ Q+Q+Q Q Q+ QQ + +Q QQ R +Q
Sbjct: 134 TQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQ---TRTSQAAP 190
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQ------QPQQQQ 169
Q Q + QQP Q Q Q + QQ
Sbjct: 191 VQAQPRQSKPASTQQPYQDLLQTPAHTTAQSKPQQ 225
|
Length = 319 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 2e-06
Identities = 33/91 (36%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ---------QQQLQMQQILLQRHAQQQQQ 141
Q QQQQ Q Q Q P QQ Q QQ Q Q Q+ QQ Q
Sbjct: 83 QPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQ 142
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q QQQQ Q P Q QQ P Q Q
Sbjct: 143 PPPQVPQQQQYQSPPQQPQYQQNPPPQAQSA 173
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-06
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 710 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 749
G LRT GH+ V S+ F P+ +L+ S DG +R W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-06
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 709 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 749
G L+T GH+ V S+ F P+ + S DG I+ W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ---QQLQMQQILLQRHAQQQQQHQQ 144
E Q Q + Q Q QQP +Q Q +Q QQ Q+ + Q QQ Q
Sbjct: 110 EAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQ 169
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ Q +P +P + +++
Sbjct: 170 PAEPVAAPQPEPVAEPAPVMDKPKRK 195
|
Length = 333 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 11/94 (11%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
E + + R++++++ + Q+Q ++++ + +Q++ +++ Q++ QM +I+ + +
Sbjct: 57 EEEERERKRKEERREGRAVLQEQIEEREKR----RQEEYEERLQEREQMDEIIERIQEED 112
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + Q++ ++Q++ +++ + +++ ++++++
Sbjct: 113 EAEAQEKREKQKKLREEIDEFNEERIERKEEEKE 146
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 17/97 (17%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ-QILLQRHAQQQ 139
+ ++ Q++Q+ + ++ Q + ++ +QQQ+ + +L+ + L Q+
Sbjct: 278 HRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRLRRALENQLALKKQRL 337
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
++ Q+ Q Q+QQQ QQ +++ + +++
Sbjct: 338 ERLTQRLNPQIQRQQQRLQQLERRLDKALRRQLKRKR 374
|
Length = 440 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ R++++QQQ ++ QQ+Q +Q + ++++ Q+Q++ + A+Q Q+
Sbjct: 79 EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA------AKQAALKQK 132
Query: 145 QHQQQQQQQ 153
Q ++ +
Sbjct: 133 QAEEAAAKA 141
|
Length = 387 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 19/96 (19%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQ----QQQLQMQQILLQRHAQ 137
+L K +E+ +Q + + + ++ + QQ+Q + + + +++ Q+Q Q +Q Q +
Sbjct: 55 ELSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDE 114
Query: 138 -QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
++++Q++ +QQ++Q ++ + ++ +Q+ RR
Sbjct: 115 LARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRR 150
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 6e-06
Identities = 14/103 (13%), Positives = 61/103 (59%)
Query: 71 HSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI 130
+ E A E + IKA E++++++ + ++++ + + +++++++++++ + Q
Sbjct: 19 NKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQE 78
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ +++Q+ ++ Q+++Q + ++ Q++ + Q++R+
Sbjct: 79 QIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKRE 121
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-06
Identities = 14/97 (14%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ-----QQQQQLQMQ-QILLQRH 135
+L++ +Q+ +Q QQ + + + +Q QQQ+ ++ ++ + + L++
Sbjct: 500 ELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQL 559
Query: 136 AQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
++ + + + + ++ +QQ Q Q + +
Sbjct: 560 QEELEARLESLSESVSEARERRMALRQQLEQLQARIQ 596
|
Length = 1486 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 27/82 (32%), Positives = 30/82 (36%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
QQ QQ+ Q Q PP QQ Q QQ Q QQ Q QQ Q Q Q
Sbjct: 110 VPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQ 169
Query: 149 QQQQQQQPPQQPQQQQPQQQQQ 170
Q Q P++ Q Q
Sbjct: 170 AQSAPQVSGLYPEESPYQPQSY 191
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 85 KAREQQQQQQQQQ-----------QQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILL 132
A QQ Q Q+ Q++Q+ + +++ + ++ +QQQ+L I L
Sbjct: 263 SAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRL 322
Query: 133 QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+R + Q ++Q ++ Q+ P Q QQQ+ QQ ++R D A
Sbjct: 323 RRALENQLALKKQRLERLTQRLNPQIQRQQQRLQQLERRLDKA 365
|
Length = 440 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 8/96 (8%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 84 IKARE--QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ ++ Q+ +++Q ++++++ Q++ + ++++ ++Q + +++Q ++ ++ +
Sbjct: 229 RRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLE 288
Query: 142 H----QQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
H +QQ +++++++ ++ ++ + +++ +
Sbjct: 289 HRRELEQQIEEKEERRAAEREEELEEGERLREEEAE 324
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 27/76 (35%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
QQ Q Q QQ P+QQQ QQ Q QQ H Q Q
Sbjct: 3 YQQNTNQYPPQNQQQQPYQQQPYHQQMPPP-----------PYSPPQQQQGHFMPPQPQP 51
Query: 155 QPPQQPQQQQPQQQQQ 170
P Q PQQQQP Q
Sbjct: 52 YPKQSPQQQQPPQFSS 67
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 9e-06
Identities = 15/79 (18%), Positives = 42/79 (53%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
K +E+Q ++ + +Q +Q++ Q + + Q+QQ+Q + +Q L++ Q++Q +
Sbjct: 82 KKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKA 141
Query: 145 QHQQQQQQQQQPPQQPQQQ 163
+Q+++ + + +
Sbjct: 142 AAEQKKKAEAAKAKAAAEA 160
|
Length = 387 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 9e-06
Identities = 34/81 (41%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPP-HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q Q QQQQSQ PP HQ Q QQ Q QQ Q+ Q Q
Sbjct: 73 LPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPP 132
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
QQ Q Q P QP Q PQQQQ
Sbjct: 133 AQQPQAQQP-QPPPQVPQQQQ 152
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 9e-06
Identities = 23/93 (24%), Positives = 56/93 (60%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ + + + + +Q+ + Q++QQQ +++ ++ ++QQQQ+Q+++ Q + Q+ QQ
Sbjct: 10 QQRYEQCQRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQH 69
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ + QQ+ +++ +Q QQQ+ Q+ Q+R
Sbjct: 70 EPRHRPTCQQRCERRYEKEQQQQQRQYQECQQR 102
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|222647 pfam14282, FlxA, FlxA-like protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q+Q Q +Q ++ ++Q+QQQ QQQ+QM Q + + QQQQ ++ QQQ
Sbjct: 25 QKQIQSLTKQLKELSSSEDLTAEEKQKQQQLIQQQIQMLQAQIAQL--QQQQSEEAQQQQ 82
Query: 150 QQQQQQPPQQP 160
Q + P Q
Sbjct: 83 QSSIEDSPSQT 93
|
This family includes FlxA from E. coli. The expression of FlxA is regulated by the FliA sigma factor, a transcription factor specific for class 3 flagellar operons. However FlxA is not required for flagellar function or formation. Length = 106 |
| >gnl|CDD|238163 cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Query: 88 EQQQQQQQQQQQQQ---------QQQQQSQQPPHQQQQQQQQQQQQ--LQMQQILLQRHA 136
+QQ Q QQQ QQ QQ PP QQ + +QQ Q+ QI
Sbjct: 1 QQQCQPGQQQPQQPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI------ 54
Query: 137 QQQQQHQ--QQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+Q + + +Q Q QQQQ Q+ QQ Q ++ ++
Sbjct: 55 PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMRQA 92
|
They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans. Length = 110 |
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 18/128 (14%), Positives = 59/128 (46%), Gaps = 37/128 (28%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQ------------QQQQQQQQLQMQQILL 132
K ++Q++ Q+ +++Q+Q+++ ++ + +Q Q+ QQ + + +
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKK 155
Query: 133 -------------------------QRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
++ Q+ + + + QQQ++++++ Q+ +QQ+ ++
Sbjct: 156 EAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEE 215
Query: 168 QQQRRDGA 175
++Q+ + A
Sbjct: 216 RKQKAEEA 223
|
This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 26/122 (21%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQ-------------------------PPHQ 113
+ Q + Q Q QQQ + Q+ Q++Q Q
Sbjct: 722 VHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQ 781
Query: 114 QQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+Q +Q + Q Q Q L+ + AQ QHQQ + +Q QQ+ Q QQ R+
Sbjct: 782 LEQLKQNLENQRQQAQTLVTQTAQALAQHQQH-RPDGLDLTVTVEQIQQELAQLAQQLRE 840
Query: 174 GA 175
Sbjct: 841 NT 842
|
Length = 1047 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 13/94 (13%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E Q +A EQ++ +Q ++++ Q+Q+ Q + +Q +Q+Q + A+ +
Sbjct: 91 ELQQKQAAEQERLKQLEKERLAAQEQKKQA--EEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ + + ++ + + + ++ +
Sbjct: 149 AEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182
|
Length = 387 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 17/96 (17%), Positives = 44/96 (45%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E Q K +QQ ++ QQ+Q +Q++ + + Q+Q++Q ++ Q L Q+ A++
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+ + + + ++ + +++ A
Sbjct: 138 AAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEA 173
|
Length = 387 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-05
Identities = 19/89 (21%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QL + + Q ++ QQQQ+ + Q+ +++ + +Q+L+ LQ+ Q++
Sbjct: 293 QLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRI 352
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ Q Q+ +Q +Q+ + ++Q +++Q+
Sbjct: 353 ERAQ-QRLEQLEQRLRRAMRRQLKRKRQR 380
|
Length = 438 |
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQP-PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
QQ QQ Q S P H Q Q QQ Q Q + Q Q QQ Q
Sbjct: 63 AQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPL-------QPPQPQQPMQ 115
Query: 148 QQQQQQQQPPQQPQQQQP 165
Q PP PQ P
Sbjct: 116 PQPPVHPIPPLPPQPPLP 133
|
They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 21/141 (14%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 29 AQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKARE 88
QA+Q K++ + +A W V ++ ++H + +L + +
Sbjct: 476 EQAYQLVRKIAGEVSRSEA--------WDVARELLRRLREQRHLAEQLQQLRMRLSELEQ 527
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+ +QQQ+ ++ + ++ + + + +Q Q++ + L + ++ +++ QQ
Sbjct: 528 RLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQ 587
Query: 149 QQQQQQQPPQQPQQQQPQQQQ 169
+Q Q + Q+ + P
Sbjct: 588 LEQLQAR-IQRLAARAPAWLA 607
|
Length = 1486 |
| >gnl|CDD|221429 pfam12118, SprA-related, SprA-related family | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
+ + AA +L K + ++ +++ ++ Q Q+QQ+QQQQ++ Q++
Sbjct: 55 KGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVR 114
Query: 129 QILLQRHAQQQQQHQQQHQ 147
+ L+ ++ + H+Q H
Sbjct: 115 E--LKARDREVRAHEQAHA 131
|
This protein is found in bacteria. Proteins in this family are typically between 234 to 465 amino acids in length. There is a conserved GEV sequence motif.Most members are annotated as being SprA-related. Length = 261 |
| >gnl|CDD|149534 pfam08513, LisH, LisH | Back alignment and domain information |
|---|
Score = 41.9 bits (100), Expect = 2e-05
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 10 KMLDVYIHDYLVKRDLKASAQAFQAEG 36
+ L+ I+DYLVK K +A+AF E
Sbjct: 1 EELNRLIYDYLVKSGYKETAEAFAKES 27
|
The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27 |
| >gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 21/85 (24%), Positives = 28/85 (32%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
AR+ Q Q Q + Q + QPP Q Q + Q A+Q Q+
Sbjct: 82 ARQSPQHQYQPEYASAQIKIPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEA 141
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q P Q QP +Q
Sbjct: 142 PAPQPVHSAAPQPAVQTVQPAVPEQ 166
|
Length = 324 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH-- 146
QQQ Q Q+ Q QQQ Q+ Q+ Q + L QQ ++Q + Q+
Sbjct: 55 QQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLS 114
Query: 147 QQQQQQQQQPPQQPQQ 162
+ Q++ +
Sbjct: 115 ELQKKVATISGSDRKD 130
|
Length = 391 |
| >gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 19/94 (20%), Positives = 40/94 (42%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
KA + QQ+ +Q +++ ++ QQ + +QQ Q + ++ +
Sbjct: 2 KAARNLAEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQGISAAELRNYQAFISALDEAI 61
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
QQQ+ +Q + + ++Q Q+ Q R L
Sbjct: 62 AQQQQELEQAEKQVEQAREQWQEANQERKKLEKL 95
|
Length = 122 |
| >gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 3e-05
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
H + QQ Q Q Q QQ QQ QQQ QP QQP Q P QQ +
Sbjct: 199 HAPKPTQQPTVQNPAQQP-------TVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQ 251
Query: 172 RDGAH 176
+ H
Sbjct: 252 TEQGH 256
|
This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 106 QSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQP 165
Q Q Q QQQQ Q Q H Q QQQQ P QP +Q
Sbjct: 1 NPYQQNTNQYPPQNQQQQPYQQQPY----HQQMPPPPYSPPQQQQGHFMPPQPQPYPKQS 56
Query: 166 QQQQQ 170
QQQQ
Sbjct: 57 PQQQQ 61
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
+ Q Q Q +QPP + +Q Q+ H+ Q Q
Sbjct: 104 PQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPV-----HSAAPQPAVQT 158
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
Q +QQ P++ + P+ ++ R ++
Sbjct: 159 VQPAVPEQQVQPEEVVEPAPEVKRPPRKDTVII 191
|
Length = 324 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
QQQ Q Q+ Q QQQ + Q+ Q+ Q L AQQQ + + +Q
Sbjct: 55 QQQNVLQTQELQALQQQLKALQLAQENQKLLAQ--------LESLIAQQQAELDRLERQL 106
Query: 150 QQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q+Q + ++ R+D
Sbjct: 107 ETLQKQLSELQKKVATISGSDRKD 130
|
Length = 391 |
| >gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ--QQQQQQLQMQQILLQRHA 136
L +A+++ +Q +++ ++ QQ + + +Q Q + + L + A
Sbjct: 3 AARNLAEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQGISAAELRNYQAFISALDEAIA 62
Query: 137 QQQQQ-----HQQQHQQQQQQQQQ 155
QQQQ+ Q + ++Q Q+
Sbjct: 63 QQQQELEQAEKQVEQAREQWQEAN 86
|
Length = 122 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
QQ+ +QQ + + Q Q + QQQ+L + L ++QQ+ + Q +Q Q
Sbjct: 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQ 204
Query: 151 QQQQQPPQQPQQQQPQQQQQ 170
++ + Q+ +Q++ + Q
Sbjct: 205 EKAAETSQERKQKRKEITDQ 224
|
Length = 1123 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
QL + + QQ + +Q QQQ + SQ P Q Q +Q + Q Q LLQ A Q
Sbjct: 161 QLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQ 220
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ QQ + P+ ++ ++R
Sbjct: 221 SK---PQQAAPVTRAADAPKPTAEKKDERR 247
|
Length = 319 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 22/78 (28%), Positives = 28/78 (35%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQ 150
+Q + + QQ + P Q Q QQ Q Q ++ Q Q Q QQ
Sbjct: 54 EQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQ 113
Query: 151 QQQQQPPQQPQQQQPQQQ 168
QQ P P QPQ
Sbjct: 114 PTPQQEPYYPPPSQPQPP 131
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 17/93 (18%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
++ +I+ +++QQ+ + Q +Q+QQ ++ +Q+QQ +Q Q + Q
Sbjct: 25 FLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQ-QRASFMAQAQEA 83
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+Q Q + ++ + +Q +++Q+
Sbjct: 84 ADEQRQHLLNEAREDVATARDEWLEQLEREKQE 116
|
Length = 250 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+QQ Q Q Q Q+ Q+Q+ + L+ Q L + +QQ +Q +
Sbjct: 59 KQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDEL 118
Query: 150 QQQ 152
QQ+
Sbjct: 119 QQK 121
|
Length = 390 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 12/89 (13%), Positives = 46/89 (51%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ K +Q ++ ++Q+ +Q +Q++ +Q ++ +Q +Q Q ++ Q + +Q
Sbjct: 69 RQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQ 128
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ + + + ++ ++ ++Q +++ +
Sbjct: 129 AAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-05
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
+ + A + Q + + Q +QQQ ++++Q++ Q QQ+ + + Q
Sbjct: 644 RQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQS 703
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q +Q++ QQ Q +++Q+Q
Sbjct: 704 VQ------ETEQEERVQQVQPRRKQRQ 724
|
Length = 1068 |
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 6e-05
Identities = 15/72 (20%), Positives = 40/72 (55%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + +A EQ++ +Q ++++ + Q+QQ Q ++Q Q +Q+QQ+ Q ++ ++ + +
Sbjct: 91 ELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAE 150
Query: 140 QQHQQQHQQQQQ 151
+ + +
Sbjct: 151 AAKAKAAAEAAK 162
|
Length = 387 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 625 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 663
K +++ T V FS DG LLA+G D +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 6e-05
Identities = 18/101 (17%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 82 QLIKAREQQ--------QQQQQQQQQQQQQQQQ---SQQPPHQQQQQQQQQQQQLQMQQI 130
+ ++ + Q+ + Q ++ QQQQ+ Q+ +++ + +Q+L+
Sbjct: 282 RRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQ 341
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
LQ+ Q++ + Q + +Q +Q+ ++ ++Q ++++QR
Sbjct: 342 RLQQQNPQRRIERAQQRLEQLEQRL--RRAMRRQLKRKRQR 380
|
Length = 438 |
| >gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 6e-05
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
R ++ ++ Q+Q Q+QQQ Q+ +Q++ Q Q + Q Q IL Q
Sbjct: 7 RRRKLEELQKQAQEQQQAQE--------EQEEAQAQAEAQKQAILRQ 45
|
Length = 110 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 7e-05
Identities = 14/72 (19%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ-QQQQLQMQQILLQRHA 136
++ +L +A E++ + +Q+ ++ Q+ Q Q P + ++ QQ+ +Q + ++++ + ++
Sbjct: 316 RLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLK 375
Query: 137 QQQQQHQQQHQQ 148
+++Q+ + QQ
Sbjct: 376 RKRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 14/100 (14%), Positives = 66/100 (66%), Gaps = 9/100 (9%)
Query: 79 IETQLIKA-REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQR--- 134
+E Q KA RE++++ ++++++++++++ ++ + QQ++ + ++ ++ ++
Sbjct: 156 LEYQREKAEREEEREAERRERKEEKEREVAR----LRAQQEEAEDEREELDELRADLYQE 211
Query: 135 -HAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ ++++Q +++ +++++Q+Q Q+ +++Q +++++R
Sbjct: 212 EYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQ 251
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 7e-05
Identities = 15/91 (16%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 66 RTNEKHSEVAASYIETQLIKARE-QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
+ + E+ E +L + E ++Q++++ ++++++ ++++++ Q+Q++Q++ Q+Q
Sbjct: 52 QDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQ 111
Query: 125 LQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
+ + + A++ + +++H QQ +Q++
Sbjct: 112 KEEAEARAREEAERMRLEREKHFQQIEQERL 142
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 111 PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
PH + + + Q+Q+ Q +Q L+ Q ++ Q+Q QQ Q Q QP QQPQQ +++
Sbjct: 143 PHMMKTKSKNQKQENQEKQEKLEESEIQSEK-QEQPSQQPQSQPQPQQQPQQPNNNKRKA 201
Query: 171 RRDG 174
+G
Sbjct: 202 MEEG 205
|
Length = 222 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 7e-05
Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 23/113 (20%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ- 139
+ +K + QQ QQ Q++++Q+ ++QQ +Q + +++ + + Q
Sbjct: 225 EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQE 284
Query: 140 ----------------------QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQ Q+ H + Q + + + ++ +QQ
Sbjct: 285 RINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQ 337
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 10/89 (11%), Positives = 22/89 (24%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
Y Q Q Q Q Q + + + + ++ L A
Sbjct: 112 YYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQSPNVPIEGINSSSEQLRVELAELAA 171
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ + + +P + + Q
Sbjct: 172 EIYSDASHRVELAKNFMEPQAETEAQPEA 200
|
Length = 332 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 8e-05
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 663
S + +++ T V FS DGK LA+G D LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 12/91 (13%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI--LLQRHAQQQQQ 141
+A E ++Q+ +Q +Q++ +Q++ +Q +Q +Q + + +Q + A + +
Sbjct: 75 QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKA 134
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ +++ +++ Q ++ + + + +
Sbjct: 135 KAEAEAEKKAKEEAKKQAEEEAKAKAAAEAK 165
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 14/81 (17%), Positives = 37/81 (45%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
+ QQ+ +Q Q +++ Q Q + QQ L + +++ Q+ + Q
Sbjct: 140 PENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQ 199
Query: 153 QQQPPQQPQQQQPQQQQQRRD 173
+Q ++ + +++Q+R++
Sbjct: 200 LEQLQEKAAETSQERKQKRKE 220
|
Length = 1123 |
| >gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-05
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
I+ R+ ++ Q+Q Q+QQQ Q++Q ++ Q Q + Q+Q ++QIL
Sbjct: 6 IRRRKLEELQKQAQEQQQAQEEQ------EEAQAQAEAQKQAILRQIL 47
|
Length = 110 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 20/174 (11%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPH---------QQQQQQQQQQQQLQMQQILLQRHA 136
A+ ++Q++ Q Q Q Q + +Q P Q Q QQQ Q
Sbjct: 361 AQRKEQRRAHLQDQFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQP---LGWP 417
Query: 137 QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG--NTNGLLGNDSLMRQ 194
+ + + P + Q + L +
Sbjct: 418 RMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQS-LPLSQD 476
Query: 195 NPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQL---LDPNHASYI 245
P + A++ + K VL S KQ GE + L ++P A+ I
Sbjct: 477 LP-QPQSTASQGGQNKKLAQVLA-SATPQMQKQVLGERLFPLVEAIEPALAAKI 528
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 49/297 (16%), Positives = 84/297 (28%), Gaps = 34/297 (11%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
+ ++++A+ Q Q+ + + LQ
Sbjct: 67 ETAKLSAAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGY---EASTDPEYIPDLQPDP 123
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGND 189
L + + Q Q + Q Q Q + ++ + Q Q+R A L +L
Sbjct: 124 SLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQG 183
Query: 190 SLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAA 249
RQ A + E+ Q + Q+ A
Sbjct: 184 MPPRQ-----AAFPQQGPPEQ-----------PPGYPQPPQGHPEQVQPQQFLPAPSQAP 227
Query: 250 A-------TGQPSGQVLHGTAGGMSPQVQARSQQLPGSTPSEINPVLNPRAAGPEGSLMG 302
A Q + G+S Q+ Q P + P P+
Sbjct: 228 AQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP---QQQQQPPQPQAQPPPQNQPTP 284
Query: 303 IPGSNQGGNNLTLKGWPLTGLEPLRSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLL 359
PG QG N P +P L+QQ + + PQ Q+ L+ Q ++ L
Sbjct: 285 HPGLPQGQNAPL----PP-PQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALS 336
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 877 ENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915
TL H G + ++A S + +AS S D V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 876 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915
S TL H G + ++A S + Y+AS S D +KLW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 15/93 (16%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + K EQQ ++ ++Q+ +Q +Q+ + ++ +Q +Q + Q Q+ A++
Sbjct: 66 EQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAK-QAEEKQKQAEEA 124
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q + + + + + ++ + Q +++ +
Sbjct: 125 KAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 31/155 (20%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
+ + Q+ QQ QQ+ + +++ +Q++Q+ Q+ + L + ++ QQQ + QQ
Sbjct: 262 RAELLQRLQQLQQRLAR--AMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQ 319
Query: 153 QQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLK 212
+ Q + + + +Q+ +R + L +QNP R+ + +
Sbjct: 320 RLQRALERRLRLAKQRLERL---------------SQRLQQQNP------QRRIERAQQR 358
Query: 213 LPVLRDSLDDAA------MKQRFGENMGQL--LDP 239
L L L A +QR QL L P
Sbjct: 359 LEQLEQRLRRAMRRQLKRKRQRLEALAQQLEALSP 393
|
Length = 438 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 12/103 (11%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 79 IETQLIKAREQQQQQQQQQ-----QQQQQQQQQSQQPPHQQQQQQQQQQQQLQ---MQQI 130
++ Q I+ RE+++Q++ ++ +Q + ++ Q+ + Q+++++Q++L+ +
Sbjct: 76 LQEQ-IEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFN 134
Query: 131 LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ +++++ +++ ++ + + Q + ++++ + +++ R
Sbjct: 135 EERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERK 177
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 1e-04
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 87 REQQQQQQQ-----QQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+E+QQQQ+Q Q++ +Q QQ+ Q P + QQ+ +++ + +Q QR Q+ QQ
Sbjct: 42 KEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQECQQ 101
Query: 142 H---QQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q+Q ++QQQ Q+ ++ Q+ + + +
Sbjct: 102 RCQQQEQRPRRQQQCQRECREQYQEHGRGEGE 133
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 65 ARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
A E+H T+L K + Q +Q Q S Q +++Q QQQ
Sbjct: 187 AMVFEQHKSA-----RTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQ 241
Query: 125 LQMQ-QILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQ 161
Q L + QQ+ ++Q QQ + QPQ
Sbjct: 242 QQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQ 279
|
Length = 1047 |
| >gnl|CDD|204848 pfam12203, HDAC4_Gln, Glutamine rich N terminal domain of histone deacetylase 4 | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 1e-04
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 87 REQQQQQQQQQ-QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
REQQ QQ+ +QQQQ Q+Q Q+Q + +Q + Q LQ H +QQQ+
Sbjct: 7 REQQLQQELLLLKQQQQIQKQLLIAEFQKQHENLTRQHEAQ-----LQEHLKQQQELLAM 61
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+QQ+ +++ + Q+Q+ + ++ RR+
Sbjct: 62 KRQQELLEKERKLEQQRQEQELEKHRRE 89
|
This domain is found in eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam00850. The domain forms an alpha helix which complexes to form a tetramer. The glutamine rich domains have many intra- and inter-helical interactions which are thought to be involved in reversible assembly and disassembly of proteins. The domain is part of histone deacetylase 4 (HDAC4) which removes acetyl groups from histones. This restores their positive charge to allow stronger DNA binding thus restricting transcriptional activity. Length = 92 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 1e-04
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 17/102 (16%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
Q I+ Q QQ+ + + + Q+ + P Q++QQ + +Q Q + QQQ +
Sbjct: 433 QSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPR-------QQQNR 485
Query: 142 HQQQHQQQQQQQQQPPQ-------QPQQQQPQ---QQQQRRD 173
Q +Q+Q Q Q P+ +P+ QPQ Q RR
Sbjct: 486 SNQNNQRQSQGPNQGPRGQGGYNLRPRTYQPQRYGGGQGRRW 527
|
Length = 582 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQS--QQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
+ QL K ++ Q + Q+++++ Q+++Q +Q ++ ++ +QQ+LQ +Q LQ+
Sbjct: 36 AQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQ 95
Query: 137 QQQQQHQQQHQQQQQQQ 153
Q QQ QQ QQ+ Q
Sbjct: 96 QAAQQELQQKQQELLQP 112
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|147845 pfam05914, RIB43A, RIB43A | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 18/76 (23%), Positives = 42/76 (55%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
QL R+ Q+QQ Q+++++++++Q ++ +Q Q + L+ Q+ L++ ++Q
Sbjct: 279 PEQLAAIRKGQEQQLQEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLRKELRKQ 338
Query: 140 QQHQQQHQQQQQQQQQ 155
Q ++Q+ QQ
Sbjct: 339 LDSANQQLAKEQKAQQ 354
|
This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterized in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells. Length = 379 |
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQ---QQQSQQPPHQQQQQQQQQQQQ 124
NE E L A +Q+Q ++Q Q + Q++++ +Q + Q+
Sbjct: 601 NETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQR 660
Query: 125 LQMQQILLQRHAQQQQQ-HQQQHQQQQQQ-QQQPPQQPQQQQPQQQQQRRD 173
LQ +Q L+ + +QQ + Q +Q Q Q +QQQ + + D
Sbjct: 661 LQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDD 711
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198 |
| >gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 11/83 (13%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
K E ++ T+ + ++QQ++++ +Q+++++++ Q+ + Q+ Q+
Sbjct: 269 KKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKL---QE 325
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQ 152
++ A+ +++ +++ ++ +Q+
Sbjct: 326 ERKEQLAKLRKEEKEREKEYEQE 348
|
This family of proteins has no known function. However, one of the members is annotated as an EF-hand family protein. Length = 349 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 2e-04
Identities = 28/62 (45%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 111 PHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPP--QQPQQQQPQQQ 168
P QQ QQ QQQ Q Q + Q QQ Q Q Q QQ Q P QPQ QQPQQ
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 810
Query: 169 QQ 170
Sbjct: 811 VA 812
|
Length = 1355 |
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 7/85 (8%), Positives = 41/85 (48%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ ++ ++++ Q+Q++Q ++ ++Q +Q+Q ++ + + + A++ +
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAK 161
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQ 169
+ + +++ + + +++
Sbjct: 162 KAAAEAKKKAEAEAAKKAAAEAKKK 186
|
Length = 387 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 12/93 (12%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+L Q++ +++++Q+++++ ++ ++ Q+Q+ Q+ +++Q++ ++ LQ +++
Sbjct: 203 ELRADLYQEEYERKERQKEKEEAEKRRR---QKQELQRAREEQIEEKEERLQEERAEEEA 259
Query: 142 -HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ ++Q + ++ + ++++ ++ + RR+
Sbjct: 260 ERERMLEKQAEDEELEQENAEKRRMKRLEHRRE 292
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 9/114 (7%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 66 RTNEKHSEVAASYIETQLIKAR------EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ 119
R + E E + + E + + Q+++++Q++ +++ + ++ ++++
Sbjct: 83 REKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKE 142
Query: 120 QQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+++++ + +++ + + +++ + +++ + +++++++ ++ + QQ++ D
Sbjct: 143 EEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAED 196
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 25/75 (33%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
QQ Q Q QQQQ QQP HQQ Q Q Q H Q Q
Sbjct: 3 YQQNTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQ------QGHFMPPQPQPYPKQS 56
Query: 149 QQQQQQQPPQQPQQQ 163
QQQQ Q
Sbjct: 57 PQQQQPPQFSSFLSQ 71
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
QQ Q Q L Q LQ+ + Q+Q + +QQ + + Q +Q
Sbjct: 59 KQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQ 114
|
Length = 390 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
K++ Q+Q+ Q++Q++ ++ + QS++ QQ Q Q Q Q Q QQ
Sbjct: 149 KSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
|
Length = 222 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ--ILLQRHAQQQQQ 141
IK Q+ Q + + Q QP +Q Q ++ Q + +
Sbjct: 101 IKITLPNQEPAYYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQSPNVPIEGINSSSE 160
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ + + + + + +
Sbjct: 161 QLRVELAELAAEIYSDASHRVELAKNFME 189
|
Length = 332 |
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 34/191 (17%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM-QQILLQRHAQQQQ 140
+ I A + +Q + + +Q +Q+ QQ + QL ++ L + +
Sbjct: 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS 220
Query: 141 QHQQQHQQQQQQQQ--------------QPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLL 186
Q++ ++ + + + + + + R A
Sbjct: 221 ADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTA 280
Query: 187 GNDSLMRQNPGTANAMATRMYEEKLKLPVLRDSLDDAAMKQRFGENM-------GQLLDP 239
L+ G +L PV + +RFG+ G ++
Sbjct: 281 PEKMLISSTGGFGAL------RGQLAWPV------TGRILRRFGQADGGGLRWKGMVIGA 328
Query: 240 NHASYIKSAAA 250
+ + +K+ A
Sbjct: 329 SAGATVKAIAD 339
|
Length = 420 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 26/109 (23%), Positives = 51/109 (46%)
Query: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
+ RT ++ ET+ AR + Q+ +Q+++ +Q+ ++Q + QQ+ +
Sbjct: 82 QLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELAR 141
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+Q Q Q L+ A+Q++Q + Q Q Q Q+Q Q + Q
Sbjct: 142 LTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLD 190
|
Length = 499 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 17/95 (17%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 66 RTNEKHSEVAASYIETQLIKAR-------EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ 118
K E + + + + Q+Q QQ+QQ+ Q Q + ++ + +QQ+
Sbjct: 69 EAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQR 128
Query: 119 QQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
+Q ++ L+MQ+ + R ++ +++ + +++
Sbjct: 129 RQNEELLKMQEESVLRQEAMRRATEEEILEMRRET 163
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 12/80 (15%), Positives = 34/80 (42%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
R+QQ+ ++ + ++ + +Q Q++ + + + + + + ++ QQ
Sbjct: 530 RQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLE 589
Query: 147 QQQQQQQQQPPQQPQQQQPQ 166
Q Q + Q+ + P Q
Sbjct: 590 QLQARIQRLAARAPAWLAAQ 609
|
Length = 1486 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+QQ Q Q Q + + Q+ Q+Q+ + + QQ A +QQ +
Sbjct: 59 KQQAQNQTATNDALANQLTAL--QKAQESQKQELEGILKQQAKALDQANRQQAALAKQLD 116
Query: 149 QQQQQ 153
+ QQ+
Sbjct: 117 ELQQK 121
|
Length = 390 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 112 HQQQQQQQQQQ--QQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
H +QQ Q Q L Q LQ + Q+ +Q+ + +QQ + Q +QQ +
Sbjct: 57 HGKQQAQNQTATNDALANQLTALQ---KAQESQKQELEGILKQQAKALDQANRQQAALAK 113
Query: 170 Q 170
Q
Sbjct: 114 Q 114
|
Length = 390 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILL-----QRHAQQQQQHQQ 144
+ Q+Q +++ ++ Q + Q+ ++++ Q+++Q+LQ Q L + Q+ QQ QQ
Sbjct: 34 KAAQKQLEKEFKKLQAELQK----KEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQ 89
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQ 167
+ QQ+QQ QQ QQ QQ+ Q
Sbjct: 90 ELQQKQQAAQQELQQKQQELLQP 112
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 24/105 (22%), Positives = 29/105 (27%), Gaps = 17/105 (16%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQ----------------QQQQQ 124
Q + A +QQQ P Q Q
Sbjct: 75 LQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPAN 134
Query: 125 LQMQQILLQRHAQQQQQHQ-QQHQQQQQQQQQPPQQPQQQQPQQQ 168
+ Q QR QQ QQ Q QQQ Q+ + Q QQQ
Sbjct: 135 SPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQ 179
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
+E ++ K E+ QQ+ ++ Q +Q QQ +++QQ ++Q Q +Q+ ++
Sbjct: 32 VEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQE---HVQQQMKE 88
Query: 139 QQQHQQQHQQQQQQ 152
+ +QQ Q++QQ+
Sbjct: 89 IEAARQQFQKEQQE 102
|
Length = 228 |
| >gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-04
Identities = 16/71 (22%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQ-QQQQQQLQMQQILLQRHAQQQQQH 142
++ R Q+ +++ + +Q+ ++ SQ+ Q Q++ ++ QQ+L+ + L+R ++Q +
Sbjct: 317 LQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKR 376
Query: 143 QQQHQQQQQQQ 153
++Q + QQ
Sbjct: 377 KRQRLEALAQQ 387
|
Length = 438 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 37/128 (28%)
Query: 85 KAREQQQQQQQQQQQQQ-------QQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
KAR Q +QQQ ++++Q +Q QQ + + ++Q Q+ +Q+ ++QQ+ +R +
Sbjct: 664 KARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQR 723
Query: 138 QQQQ------------------------------HQQQHQQQQQQQQQPPQQPQQQQPQQ 167
Q Q + + + Q +Q +
Sbjct: 724 QLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQTAPEQDEEN 783
Query: 168 QQQRRDGA 175
+ RD
Sbjct: 784 NAENRDNN 791
|
Length = 1068 |
| >gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I + A EQ+QQ+ Q+ ++ +Q+QQS + Q Q+ Q Q +L +
Sbjct: 41 IANRWQDA-EQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDV 99
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQ 167
+ +Q ++++Q+ + QQQ QQ
Sbjct: 100 ATARDEWLEQLEREKQEFFKALQQQTGQQ 128
|
Length = 250 |
| >gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 17/99 (17%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
L + + + ++ +QQQ+ + + + + Q ++Q+L+ L QR Q Q
Sbjct: 293 EHLARRLQFRSPERLLSEQQQRLDELAIRLRRALENQLALKKQRLER---LTQRLNPQIQ 349
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLN 179
+ QQ+ QQ +++ + ++ +++ ++ + + L+
Sbjct: 350 RQQQRLQQLERRLDKALRRQLKRKRERLEALVEQLESLS 388
|
Length = 440 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 4e-04
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
IKA Q +QQ Q+ + Q + +S+ ++ +QQ ++ Q+ LLQ Q+ +
Sbjct: 299 IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIR 358
Query: 144 QQHQQQQQQQQQPPQQPQQQQP--QQQQQ 170
H+ ++ QQ Q QQQ
Sbjct: 359 DAHEVATSIREISCQQHTLTQHIHTLQQQ 387
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 13/115 (11%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ--- 145
+QQ + +Q Q +QQQ +Q+Q Q Q + Q L R Q Q+ Q
Sbjct: 467 RQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQGGYNLRPRTYQPQRYGGGQGRR 526
Query: 146 ----------HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDS 190
+ QQQQ QP + Q + + + G N N S
Sbjct: 527 WNPNPYRQSGQGRSQQQQPQPEARGNQSRTPGPGRGQGGRGNQNRNQRSGNNTVS 581
|
Length = 582 |
| >gnl|CDD|182789 PRK10863, PRK10863, anti-RNA polymerase sigma factor SigE; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 112 HQQQQQQQQQQQQLQM--QQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQ 166
+ QQQQ Q+Q++++ Q LQR +Q +Q Q QQ Q P Q Q Q
Sbjct: 160 NGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGTQSLGTQSQ 216
|
Length = 216 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (100), Expect = 5e-04
Identities = 53/237 (22%), Positives = 83/237 (35%), Gaps = 28/237 (11%)
Query: 472 PAGSVTLDGSMSNSFRGNDQVSKNQ---TGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 528
P GS+ GS + R D S + T V S + + +
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR- 309
Query: 529 STPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSN----QLWDDKDLELRAD 584
T + S+ H G S + F DG+ ++ S+ +LWD + +
Sbjct: 310 -LWDLETGKLLSSLTLKGHEGPVSS--LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366
Query: 585 MDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 644
++ S+ + + + + D R D+S G + + TS+V FS
Sbjct: 367 LEGHSNVLSVSFSPDGRVV--SSGSTDGTVRLWDLSTGSLLRNLDGH---TSRVTSLDFS 421
Query: 645 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 701
DGK LA+G D LW T V FSP LA+ S D +V
Sbjct: 422 PDGKSLASGSSDNTIRLWDLKTSLKS------------VSFSPDGKVLASKSSDLSV 466
|
Length = 466 |
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 20/96 (20%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQ-------QSQQPPHQQQ 115
A+ E ++ A + +E ++A E+++ Q+Q QQ+QQ+ Q + Q +QQ
Sbjct: 68 LEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQ 127
Query: 116 QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
++Q ++ ++Q + +L Q ++ + + +++
Sbjct: 128 RRQNEELLKMQEESVLRQEAMRRATEEEILEMRRET 163
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif. Length = 276 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-04
Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 53/162 (32%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQ--------------- 108
+A T ++ EV T ++AR + +Q + Q QQQ +
Sbjct: 306 LAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQSLNTWLAEHDRFRQWNNEL 365
Query: 109 --------QPPHQQQQQQQQQQQ----------------------------QLQMQQILL 132
Q ++Q +Q QQQ Q Q+ L
Sbjct: 366 AGWRAQFSQQTSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQHAEQRPLR 425
Query: 133 QRHAQQQQQHQQQHQQQQQQQQ--QPPQQPQQQQPQQQQQRR 172
QR Q Q ++ Q Q Q Q Q Q+ + R
Sbjct: 426 QRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMR 467
|
Length = 1047 |
| >gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 15/85 (17%), Positives = 36/85 (42%)
Query: 68 NEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
E + T + Q +++ Q Q + QQQ+ + +++QQ+
Sbjct: 140 PENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQ 199
Query: 128 QQILLQRHAQQQQQHQQQHQQQQQQ 152
+ L ++ A+ Q+ +Q+ ++ Q
Sbjct: 200 LEQLQEKAAETSQERKQKRKEITDQ 224
|
Length = 1123 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 13/121 (10%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ--QQLQMQQI-------- 130
Q + R QQ QQ+ Q QQ + + Q QQQ + QQ
Sbjct: 138 DQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDES 197
Query: 131 -LLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGND 189
L R + +Q+ + + +Q + Q + +R ++G + G+
Sbjct: 198 EALVRLREADGTLEQRIKGAEGGGAMKVL--KQPKKQAKSSKRRTIAQIDGIDSDDEGDG 255
Query: 190 S 190
S
Sbjct: 256 S 256
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 21/90 (23%), Positives = 49/90 (54%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
V+ S +L + + + +++ Q+ ++ Q+ H++ Q +Q+QQ+L+ ++ L
Sbjct: 13 VSFSEETYELQFPKPIEVEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLL 72
Query: 134 RHAQQQQQHQQQHQQQQQQQQQPPQQPQQQ 163
+Q Q+H QQ ++ + +Q Q+ QQ+
Sbjct: 73 ADREQFQEHVQQQMKEIEAARQQFQKEQQE 102
|
Length = 228 |
| >gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
+ Q + Q+ + + + QQQ Q +Q Q + Q + Q+ L
Sbjct: 57 LRTFARSLQALNLELIQELNELKARLQQQLLQSREQ---LQLLIESLAQLSSEFQE-LAN 112
Query: 134 RHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHL 177
++ + + QQ +Q P + ++ ++Q ++R
Sbjct: 113 EIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQRIHESA 156
|
Length = 448 |
| >gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 5e-04
Identities = 14/97 (14%), Positives = 35/97 (36%)
Query: 76 ASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRH 135
S A+ +Q+Q +Q Q + + +Q + + Q + Q+
Sbjct: 102 PSNGGGVEESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKA 161
Query: 136 AQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q ++ + + +Q Q+ P+Q + +
Sbjct: 162 RTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQ 198
|
FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis [Cellular processes, Cell division]. Length = 298 |
| >gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 5e-04
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 98 QQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q Q P H Q Q + Q Q +H QQ QHQ+QHQQ
Sbjct: 291 HHQHQHHHHPSIPAHHQHQLPEGHQHDHQHHH----QHQQQDLQHQEQHQQH 338
|
ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication. ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 S. cerevisiae). The N-terminal two thirds of the protein are necessary for DNA binding, and the N-terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure. Length = 508 |
| >gnl|CDD|182398 PRK10350, PRK10350, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 5e-04
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 100 QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ-QHQQQHQQQQQQQQQPPQ 158
Q Q SQQ Q Q QQ QQ+ + QQ+ Q QQQ Q+Q + Q+ QQ QP
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKTQTRLQQQHLQNQINNNSQRVQQGQPGN 87
Query: 159 QPQQQQP 165
P +QQ
Sbjct: 88 NPARQQM 94
|
Length = 145 |
| >gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 13/86 (15%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 82 QLIKA---REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
QL+KA +++ ++ ++++++Q++Q + + +Q ++ + A++
Sbjct: 5 QLLKAGLVDKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAK-----------AEK 53
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQ 164
++ ++ ++Q+Q + +Q Q +Q
Sbjct: 54 AERDRELNRQRQAEAEQKAIVAQIKQ 79
|
This domain, found in various prokaryotic proteins, has no known function. Length = 177 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 20/83 (24%), Positives = 44/83 (53%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+ Q A ++ QQ + ++ + Q +Q Q P ++Q+++ +++Q Q + L Q
Sbjct: 645 QAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSV 704
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQ 162
Q+ +Q+ + QQ Q ++ +Q Q
Sbjct: 705 QETEQEERVQQVQPRRKQRQLNQ 727
|
Length = 1068 |
| >gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 6e-04
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQ-------QQQQQQQQQLQMQQILL 132
E Q + RE+ Q++ +Q QQ+ QQ + + P QQ ++QQQQQ+Q Q
Sbjct: 44 EQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQE----C 99
Query: 133 QRHAQQQQQHQQQHQQQQ----QQQQQPPQQPQQQQPQQQQQRR 172
Q+ QQQ+Q ++ QQ Q +Q Q+ + + Q+ ++ R
Sbjct: 100 QQRCQQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEER 143
|
This region is found in plant seed storage proteins, N-terminal to the Cupin domain (pfam00190). In Macadamia integrifolia, this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro. Length = 147 |
| >gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQ 144
RE + +QQ + +Q+ + +Q Q +QQ Q+ ++ + L Q A+ Q Q Q
Sbjct: 79 LRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARKAQEKFAELARQEQAEAQAQRQY 138
Query: 145 QHQQQQQ 151
+ +Q+
Sbjct: 139 LEELEQE 145
|
This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis. Length = 152 |
| >gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM 127
K ++Q+ Q++Q++ ++ + Q + Q+ P QQ Q Q Q QQQ Q
Sbjct: 150 SKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
|
Length = 222 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQL-QMQQILLQRHAQQQQQHQQQHQ 147
+ + QQ P Q Q QQQQ Q Q Q QQ Q QQ
Sbjct: 56 VAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPT 115
Query: 148 QQQQQQQQPPQQPQQQQPQQQQ 169
QQ+ PP QPQ QQ Q
Sbjct: 116 PQQEPYYPPPSQPQPPPAQQPQ 137
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 91 QQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ-QQHQQQ 149
Q + Q Q P Q Q Q+ L Q + Q QQ
Sbjct: 106 GPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQ 165
Query: 150 QQQQQQPPQQPQQQQPQQ-QQQRRDGA 175
Q Q+ Q QQQ + Q+ DGA
Sbjct: 166 QSAQKNDESQLQQQPNGETPPQQTDGA 192
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 16/77 (20%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 79 IETQLIKAREQQQQQQQQQQQ--QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHA 136
+ QL K +++Q + ++ ++ Q+ +++ + + +++++++LQ + QR
Sbjct: 19 AQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQ 78
Query: 137 QQQQQHQQQHQQQQQQQ 153
Q+ QQ Q+ QQ++ Q+
Sbjct: 79 QKLQQDLQKRQQEELQK 95
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140 |
| >gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
+L + RE+ Q+ + +++Q QQ+ QQ QQQ+ +Q + + ++ L + Q+
Sbjct: 173 AELKQTREELAAQKAELEEKQSQQKTLLY--EQQAQQQKLEQARNERKKTLTGLESSLQK 230
Query: 141 QHQQ 144
QQ
Sbjct: 231 DQQQ 234
|
Length = 428 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 8e-04
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 673 LEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLR-------TFMGHSASVM 724
L+ H+S I D++F+P LA+ S D T+RVW+ + S++ GH +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 725 SLDFHPNKDDLICSCDGDGEIRYWSINN 752
+D++P ++CS D + W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157
|
Length = 568 |
| >gnl|CDD|204565 pfam10956, DUF2756, Protein of unknown function (DUF2756) | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 9e-04
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 100 QQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ-QHQQQHQQQQQQQQQPPQ 158
Q Q SQQ Q Q QQ QQ+ + QQ+ Q QQQ Q+Q + QQ+ QQ QP
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLQTQTRLQQQHLQNQLNNNQQRVQQGQPGN 87
Query: 159 QPQQQQ 164
+QQ
Sbjct: 88 LNARQQ 93
|
Some members in this family of proteins are annotated yhhA however currently no function is known. The family appears to be restricted to Enterobacteriaceae. Length = 104 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 78 YIETQLIKAREQQQQQQQQQQQQQQQQQQSQ-----QPPHQQQQQQQQQQQQLQMQQILL 132
Y + Q A + Q QQ QQ Q Q QQ Q QP +QQ QQ Q Q + LL
Sbjct: 791 YQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLL 850
Query: 133 QRHAQQQQQHQ 143
R+ + H+
Sbjct: 851 MRNGDSRPLHK 861
|
Length = 1355 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 33/124 (26%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQ---------PPHQQ 114
+ + N + E +E L Q+QQQ+ Q +Q ++ +
Sbjct: 839 LRQLNRRRVE-----LERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLA 893
Query: 115 Q-------------------QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
QQ QL+ +LQ +Q +Q +Q +QQ QQ Q+
Sbjct: 894 DRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRD 953
Query: 156 PPQQ 159
QQ
Sbjct: 954 AKQQ 957
|
Length = 1486 |
| >gnl|CDD|238163 cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 26/96 (27%)
Query: 88 EQQQQQQQQQQQQ---------QQQQQQSQQPPHQQQQQQQQQQQ---QLQ--------- 126
+Q Q QQQ QQ QQ P QQ + +QQ QL
Sbjct: 2 QQCQPGQQQPQQPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPEQCRCE 61
Query: 127 -----MQQILLQRHAQQQQQHQQQHQQQQQQQQQPP 157
+Q ++ Q+ QQ+QQ Q+ ++ +Q Q P
Sbjct: 62 ALRQMVQGVIQQQQQQQEQQQGQEVERMRQAAQNLP 97
|
They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans. Length = 110 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPP----------------HQQQQQQQQQQQQLQMQQ 129
+++Q +Q QQQ +Q+ + P H +Q+ +Q+ L Q
Sbjct: 376 TSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQHAEQRPLRQRLVALHGQI 435
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q+ Q Q Q Q+Q Q+ + +Q+ ++ QQ D
Sbjct: 436 VPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLAD 479
|
Length = 1047 |
| >gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQ 126
+ QL ++ Q+ Q+Q+ + +QQ ++ ++QQ +Q +LQ
Sbjct: 72 LANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQ 119
|
Length = 390 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 15/95 (15%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
Q+++ + ++ QQ QQ ++ + Q++Q ++QQ L+ + ++ Q+
Sbjct: 222 QVLEKELKHLREALQQTQQSHAYLTQKR---EAQEEQLKKQQLLKQLRARIEELRAQEAV 278
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
++ ++ + ++ P + Q +Q+ H
Sbjct: 279 LEETQERINRARKAAPLAAHIKAVTQIEQQAQRIH 313
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
K ++ +QQ ++Q++ Q Q+ + + +++I Q+H Q
Sbjct: 320 MRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ 379
Query: 140 QQHQQQHQQQ--QQQQQQPPQQPQQQQPQQQQQ 170
H Q Q+ Q+ Q ++ Q +Q
Sbjct: 380 HIHTLQQQKTTLTQKLQSLCKELDILQREQATI 412
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 18/104 (17%), Positives = 50/104 (48%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
+K + +A+ +++Q++ + + Q +Q+ Q + +Q + ++ QQ Q
Sbjct: 174 QKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAI 233
Query: 129 QILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q + +Q+ QQ + +Q +++++Q + Q +Q+ +
Sbjct: 234 QQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQ 277
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 72 SEVAASYIETQLIKAREQQQQQQQQQQQQ--------QQQQQQSQQPPHQQQQQQQQQQQ 123
S+V + + I+ Q + Q QQ+ Q Q+ Q Q+ Q
Sbjct: 186 SQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQ 245
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q+ + ++ +Q Q+ + + +Q+ Q Q +QQ
Sbjct: 246 QIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQA 292
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 22/90 (24%), Positives = 35/90 (38%)
Query: 83 LIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQH 142
L +++Q Q Q + Q + Q+ Q + Q + L R A QQ
Sbjct: 170 LQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQT 229
Query: 143 QQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
Q QQ+ Q Q QQ + Q +++ R
Sbjct: 230 AQAIQQRDAQISQKAQQIAARAEQIRERER 259
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 22/88 (25%), Positives = 35/88 (39%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
L + R Q + Q Q Q Q+Q Q S Q + + Q++ + L A Q
Sbjct: 155 TLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQA 214
Query: 142 HQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
++ ++ QQ Q QQ+ Q Q
Sbjct: 215 RTEELARRAAAAQQTAQAIQQRDAQISQ 242
|
Length = 499 |
| >gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 17/84 (20%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E+ KA ++Q +++ +++Q + ++ + + Q+ +++ Q+ + + ++ ++
Sbjct: 12 ESPAGKAAQKQLEKEFKKRQAELEKLEKEL----QKLKEKLQKDAATLSEAAREKKEKEL 67
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQ 163
Q+ Q+ Q++QQ+ QQ Q+ QQ+
Sbjct: 68 QKKVQEFQRKQQKLQQDLQKRQQE 91
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 140 |
| >gnl|CDD|204565 pfam10956, DUF2756, Protein of unknown function (DUF2756) | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.001
Identities = 25/68 (36%), Positives = 32/68 (47%)
Query: 105 QQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQ 164
Q Q P QQ+ Q Q Q QQ+Q + +L Q+ Q + QQ Q Q QQ QQ Q
Sbjct: 28 QPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLQTQTRLQQQHLQNQLNNNQQRVQQGQPGN 87
Query: 165 PQQQQQRR 172
+QQ
Sbjct: 88 LNARQQVL 95
|
Some members in this family of proteins are annotated yhhA however currently no function is known. The family appears to be restricted to Enterobacteriaceae. Length = 104 |
| >gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQ---QQQQQQQQQLQ 126
K ++ A + +++A Q + Q + Q + + + ++ Q +L
Sbjct: 89 KKGQLLARLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVSQAELD 148
Query: 127 MQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
Q LL+ + Q + +
Sbjct: 149 AAQALLRAAEALVEAAQAALASAKLNLEY 177
|
Length = 372 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
I + Q + Q+ + + HQ++ + +Q LQ Q + QQ Q +
Sbjct: 252 IVSPNQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEK 311
Query: 144 QQHQQQ----------QQQQQQPPQQPQQQQPQQQQQR 171
+ ++Q +Q++ + ++ Q P Q R
Sbjct: 312 LEKRKQAALNKQLERTRQKKTRLTKRLTQTNPSPQILR 349
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 74 VAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI--L 131
AA+ L +A QQ Q Q++ + Q Q+ + + +++I L
Sbjct: 15 GAAAAAAASLDQALAAAQQTVAAAAQSQKKIDKW-----ADQTQELLAEIRQLLKEIENL 69
Query: 132 LQRHAQQQQQHQQQHQQQQQQQQQ 155
+ Q Q+ Q Q+ QQQ
Sbjct: 70 RVYNDQLQRLVANQQQEIASLQQQ 93
|
This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length. Length = 250 |
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 19/127 (14%), Positives = 30/127 (23%), Gaps = 9/127 (7%)
Query: 95 QQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQ 154
Q Q Q S++ + Q+ M QQ ++ Q
Sbjct: 11 QAQSQVHTGAASSKKSARPHRAYANFSAGQMGMPPYTTPPLQQQSRRQIDQAATAMHNTG 70
Query: 155 QPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEEKLKLP 214
P P Q Q++ + G P N + E P
Sbjct: 71 ANNPAPSVMSPAFQSQQKFSS---------PYGGSMADGTAPKPTNPLVPVDLFEDQPPP 121
Query: 215 VLRDSLD 221
+ L
Sbjct: 122 ISDLFLP 128
|
Length = 861 |
| >gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ 122
F E AA E + +++ +++ + +QQ+ + + + + +
Sbjct: 24 FDPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAE 83
Query: 123 QQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQ 159
Q + AQ +Q + Q Q Q Q
Sbjct: 84 GYEAGYQ---EGLAQGLEQGLAEGQAQAAPQAAQLQA 117
|
Length = 246 |
| >gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 2/97 (2%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
Q + +Q+ H + +++ + Q QQ Q+ QQ
Sbjct: 197 HMNQGLRARQEMMGLGIMAGGVYGVHDGRSKRRLVDRYPQFQQG--QKQVLSPQQRFLHG 254
Query: 147 QQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTN 183
++ + PP + G
Sbjct: 255 MERYEASGMPPPAEWAGSNGLHVLPGRREEVPRGIFR 291
|
Length = 505 |
| >gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 80 ETQLIKAREQQQQ--QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQ 137
E +L++ +E+Q+Q +Q Q+ +Q +QQ + P ++ Q+ Q Q Q
Sbjct: 99 EKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQPAGVNVANNPQPQVQ 158
Query: 138 QQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
Q Q + Q+ P Q +P Q
Sbjct: 159 PQFGPNPQQRINPQRFGFPMQPNMGMRPGFNQ 190
|
This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence. Length = 279 |
| >gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 15/47 (31%), Positives = 17/47 (36%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQ 128
QL+ R Q Q Q Q QQ QQ QQQ + Q
Sbjct: 109 QLLGGRPQGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQP 155
|
Length = 172 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.002
Identities = 23/90 (25%), Positives = 28/90 (31%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
E + A E QQ Q Q Q + QQP QQ +Q Q Q
Sbjct: 370 EPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPA 429
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
QQ +Q Q +QQ Q
Sbjct: 430 QQPYYAPAPEQPVAGNAWQAEEQQSTFAPQ 459
|
Length = 1355 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQS-QQPPHQQQQQQQQQQQQLQMQQILLQRHA-- 136
ETQ ++ Q ++ Q + S +QPP +Q + + Q A
Sbjct: 19 ETQKELSKLQLSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPA 78
Query: 137 ----QQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q QQ Q Q Q Q P Q Q PQQ +++
Sbjct: 79 PQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQE 119
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
+Q +Q + Q+QQ Q Q Q QQ + L + + Q + Q QQ +
Sbjct: 783 EQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENT 842
Query: 150 QQQQQQPPQQPQQQQPQQQQQ 170
+Q + Q Q +QQQQ
Sbjct: 843 TRQGEIRQQLKQDADNRQQQQ 863
|
Length = 1047 |
| >gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 112 HQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
QQQ Q Q+ Q QQ+ + AQ+ Q+ Q + QQQ + ++Q Q+Q
Sbjct: 54 GQQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQ 112
|
Length = 391 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.002
Identities = 12/90 (13%), Positives = 63/90 (70%)
Query: 81 TQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQ 140
T+L+ + +Q ++Q++Q++Q++++Q+ Q +++ +++ +++L+ ++ ++ ++ +
Sbjct: 25 TRLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAR 84
Query: 141 QHQQQHQQQQQQQQQPPQQPQQQQPQQQQQ 170
+ +++ +++ +++++ Q+ Q++ +Q+++
Sbjct: 85 EKEEKAKRKAEEEEKQEQEEQERIQKQKEE 114
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
Q + QQ Q + + Q QQ+ +Q + +I L Q+ + Q+
Sbjct: 61 LNPQSYVETTPPPFQQPQTEESESENEVQIQQEVEQSVDEIKITLP---NQEPAYYMQNH 117
Query: 148 QQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDS 190
+ + Q P QPQ Q P Q + G +S
Sbjct: 118 RSEPIQ---PTQPQYQSPTQTNVASMTIEETQSPNVPIEGINS 157
|
Length = 332 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 99 QQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQ 158
Q + QS Q + + + Q+ Q + QQ + Q +QQQ +
Sbjct: 433 QSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRR---QQNRGRQSSQPPRQQQNRSNQN 489
Query: 159 QPQQQQPQQQQQRRDGAHLLNGNT 182
+Q Q Q R G + L T
Sbjct: 490 NQRQSQGPNQGPRGQGGYNLRPRT 513
|
Length = 582 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 86 AREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQ 145
A +Q Q QQ+ Q Q+ Q +Q +++++Q Q+L+ Q L++ Q + + Q
Sbjct: 225 AAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQA 284
Query: 146 HQQQQQQQQQPPQQPQ------QQQPQQQQQRRDGAHLL 178
+ + +QQ Q+ Q Q+ Q Q Q + A LL
Sbjct: 285 YVRLRQQAAAT-QRGQVLAGAAQRVAQAQAQAQAQAQLL 322
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL---LQRHAQQQQ 140
I+ RE+Q Q+ + Q + +Q+ + +Q + +QQ Q Q+L QR AQ Q
Sbjct: 254 IRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQA 313
Query: 141 QHQQQHQQQQQ-------QQQQPPQQPQQQQP 165
Q Q Q Q + ++ P++ ++Q+P
Sbjct: 314 QAQAQAQLLSSANRPAALRLRRSPRRGRRQRP 345
|
Length = 499 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 21/99 (21%), Positives = 44/99 (44%)
Query: 80 ETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
+L +A + Q++ + +Q Q Q P ++ QQ Q ++ + +Q L + ++
Sbjct: 268 NVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALNKQLERT 327
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
+Q + + ++ Q PQ + Q +Q RR A
Sbjct: 328 RQKKTRLTKRLTQTNPSPQILRAQTRTEQLNRRLNALKN 366
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|161783 TIGR00237, xseA, exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 18/98 (18%), Positives = 39/98 (39%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
Q++ + +Q +Q P + QQ Q ++L+ ++ ++ + ++
Sbjct: 276 DTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAALNKQLERTRQKKTRLT 335
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLL 186
++ Q P Q + Q + +Q R L N N L
Sbjct: 336 KRLTQTNPSPQILRAQTRTEQLNRRLNALKNAQANLKL 373
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits [DNA metabolism, Degradation of DNA]. Length = 432 |
| >gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 15/46 (32%), Positives = 17/46 (36%)
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
Q Q + Q QQ + QQ QQQ PQQ PQ
Sbjct: 116 QGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPAPQPAA 161
|
Length = 172 |
| >gnl|CDD|213398 cd12191, gal11_coact, gall11 coactivator domain | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 25/90 (27%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQ---------PPHQQQQQQ----------------QQQQQ 123
QQQQQ QQQQQQQ Q Q PP + QQ
Sbjct: 1 PQQQQQPQQQQQQQMPQNPQLVNMMDNMPIPPQLLAKIPNLPPEVKTWRQLKAWLQQNNI 60
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQ 153
Q + + + Q Q+ QQQQQQQ
Sbjct: 61 PPQAMEQIKEVQQTHFQLLMQRRQQQQQQQ 90
|
Gall11/MED15 acts in the general regulation of GAL structural genes and is required for full expression for several genes in this pathway, including GALs 1,7, and 10 in Saccharomyces cerevisiae. GAL11 function is dependent on GCN4 functionality and binds GCN4 in a degenerate manner with multiple orientations found at the GCN4-Gal11 interface. Length = 90 |
| >gnl|CDD|197397 cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9) | Back alignment and domain information |
|---|
Score = 38.1 bits (88), Expect = 0.002
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 87 REQQQQQQQQQQQQQQQQQ--------QSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
REQQ QQ+ +QQQQ Q Q Q +Q + Q Q+ Q Q++L + Q+
Sbjct: 5 REQQLQQELLALKQQQQIQKQLLIAEFQKQHENLTRQHEAQLQEHIKQQQEMLAIKQQQE 64
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQ 163
+ Q++ +QQ+Q+Q+ Q+ +QQ
Sbjct: 65 LLEKQRKLEQQRQEQELEKQRREQQ 89
|
This superfamily consists of a glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDAC9; it is missing in HDAC7. It is referred to as the glutamine-rich domain, and confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors. This domain is able to repress transcription independently of the HDAC's C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 10 KMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39
L+ I +YL++ + +A+ Q E +S
Sbjct: 4 SELNRLILEYLLRNGYEETAETLQKESGLS 33
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 8/111 (7%), Positives = 50/111 (45%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ ++ +++++ ++++ +Q + ++ ++ + + + ++ ++ Q
Sbjct: 153 ATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQG 212
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQN 195
++++ ++ ++ ++++ ++ R D G+ +G G R+
Sbjct: 213 DRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG 263
|
Length = 672 |
| >gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 97 QQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQ 133
+ + + QQQ QQQQ++QQQQ++ Q Q IL Q
Sbjct: 3 RARLAELQQQQGGLEEQQQQEEQQQQEEAQKQAILRQ 39
|
This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105 |
| >gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
I+ + QQQQ ++QQQQ+ +QQQQ++ Q+Q ++QIL
Sbjct: 1 IRRARLAELQQQQGGLEEQQQQE-------EQQQQEEAQKQAILRQIL 41
|
This domain is believed to bind double-stranded DNA of 20 bases length. Length = 105 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 659 AVLWHTDTLKSKTN---LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLR 714
AVL HTD K +N L I DV F+P P +L T+S D T+ W G +
Sbjct: 54 AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN 113
Query: 715 T------FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 765
GH+ V + FHP+ +++ S D + W + G V K + Q
Sbjct: 114 ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170
|
Length = 493 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.002
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQ 122
+Q +QQQQQ QQQ Q + P QQ Q QQ
Sbjct: 49 DQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQ 83
|
Length = 84 |
| >gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869) | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 85 KAREQQQQQQQQQQQQQQQ-QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQ 143
+ + + Q+Q Q +Q+ QQ + Q Q+ + ++Q QQ +Q+Q Q+ Q++ +
Sbjct: 20 ELQAELQEQLTQLEQELQQLEFQGQKAIKEIRKQSAQQIEQIQ------QQVEQERAKRL 73
Query: 144 QQHQQQQQQQQQ 155
+Q Q Q +Q
Sbjct: 74 EQKNQLLFQIEQ 85
|
This bacterial family of proteins has no known function. Length = 131 |
| >gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1) | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 89/494 (18%), Positives = 158/494 (31%), Gaps = 66/494 (13%)
Query: 90 QQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQ 149
Q QQ + + + + +++Q QQQ Q L+ +Q+++ ++Q +QQ
Sbjct: 248 QPQQHETSPAESYGAAAAGLNSRENKRKQMLPQQQQQSFDQLVSPRKEQKREERRQLKQQ 307
Query: 150 QQQQQQPPQQPQQQQPQQQQQRRDGAHLLNGNTNGLLGNDSLMRQNPGTANAMATRMYEE 209
+ Q+ +Q QQ+ Q D G L DS R N A+A
Sbjct: 308 LRDMQKQLRQLQQKYVQIYDSTDDSTDDDIHEDIGNLSEDSPSRSNSLDASAPDNGGDRP 367
Query: 210 KLKLPVLRDSLDDAAMKQRFGENMGQLLDPNHASYIKSAAATGQPSGQVLHGTAGGMSPQ 269
+ + D M + P + AAA + Q
Sbjct: 368 RSDNEMS----DLDMMSKMMSHKPMHPNKPGGFVDMDRAAA---------------LYEQ 408
Query: 270 VQARSQQLPGST--PSEINPVLNPRAAGPEGSLMGIPGSNQGGNNLTLKGWPLTGLEPL- 326
Q + T S++ GS G + G TLK T L +
Sbjct: 409 EQRMVKDDGKGTAPKSDLPEREGMLRQSCIGSPGPSSGLDGEGLAETLKQELNTSLSQVV 468
Query: 327 ----------RSGLLQQQKPFIQAPQPFHQIQMLTPQHQQLLLAQQNLTSPSASDESRRF 376
R L +Q KP AP+ + ML Q +L +++ + + +D + F
Sbjct: 469 DTVVKRFVHQRRALSKQAKPERAAPEQLFKDLMLPSQ----MLDRKSPRTHTVNDRGQCF 524
Query: 377 RMLLNNRSMSLGKDGLSNSVGDVVSNVGSPLPAGGHLLPRGDTDMLIKLKMAQMHQQQQQ 436
+ +S + D +NV + M Q Q
Sbjct: 525 ----GDPDISTAAMFIIPKPPDSFANVAAAALYNSPF---------------CMPQTPQP 565
Query: 437 QQQQQQQNS-------NPQQHTLSNQQ--SQSSNHNLHQQDKMGPAGSVTLDGSMSNSFR 487
Q +Q + ++H +++ + ++ + L +D +GPA +S
Sbjct: 566 QDAPEQTEALSLVVTPKKKRHKVTDTRITPRTVSRILALRDAVGPAAGTHHQPLHPSSLS 625
Query: 488 GNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPS--TPSTHTPGDVISMPAL 545
+ P++ + P S + P +P PS PG P L
Sbjct: 626 ASMGFHPPPFRHPFPLPLTVAIPNPSLHQSEVFMGYPFQSPHLGAPSGSPPGKDRDSPDL 685
Query: 546 PHSGTTSKPLMMFG 559
P T+ P ++
Sbjct: 686 PRPTTSLHPKLLSA 699
|
The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm. This family contains an atypical homeobox domain. Length = 908 |
| >gnl|CDD|221016 pfam11180, DUF2968, Protein of unknown function (DUF2968) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQ 141
+ I A E + ++ Q Q Q Q+Q Q +QQQ + + + QR A Q Q
Sbjct: 119 RQIAASEARAERLQADLQLAQAQEQ--------QVAARQQQARQEAVALEAQRQAAQAQL 170
Query: 142 HQQQHQQQQQQQQQ 155
+ Q Q +Q Q QQ
Sbjct: 171 RKLQRQIRQLQAQQ 184
|
This family of proteins has no known function. Length = 192 |
| >gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 104 QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ--QQQPPQQPQ 161
Q +Q +Q Q +QQ Q+ ++ +Q+Q Q Q+Q QQ +QQ Q
Sbjct: 113 QLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQS 172
Query: 162 QQ--QPQQQQQR 171
+ Q QQQ R
Sbjct: 173 RTTEQSWQQQTR 184
|
Length = 319 |
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 19/119 (15%), Positives = 67/119 (56%), Gaps = 19/119 (15%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQ--------QQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
EK EVA + Q +A +++++ Q++ +++++Q+++ ++ +++++
Sbjct: 179 EKEREVAR--LRAQQEEAEDEREELDELRADLYQEEYERKERQKEK------EEAEKRRR 230
Query: 121 QQQQLQ---MQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q+Q+LQ +QI + Q+++ +++ ++++ ++Q + +Q+ ++++ + H
Sbjct: 231 QKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEH 289
|
Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 81 TQLIKAREQQQQQQQQ--QQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
QL + E Q+QQ Q Q Q Q Q P +Q Q ++ Q+ AQQ
Sbjct: 783 EQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQL-----AQQ 837
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQ 169
+++ + + +QQ +Q QQQQ QQ
Sbjct: 838 LRENTTRQGEIRQQLKQDADNRQQQQALMQQ 868
|
Length = 1047 |
| >gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL 131
++ Q E+ ++ +QQ+ QQ+QQ+ Q +Q Q QQ+ QQ+QQ +Q I
Sbjct: 65 LQKQAATLSEEARKAKQQELQQKQQELQQKQ---QAAQQELQQKQQELLQPIY 114
|
This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 15/80 (18%), Positives = 25/80 (31%)
Query: 92 QQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQ 151
Q Q Q + QQ+ QL QQ Q++ + Q Q Q + Q
Sbjct: 128 VTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQ 187
Query: 152 QQQQPPQQPQQQQPQQQQQR 171
Q + + ++
Sbjct: 188 QTDGAGDDESEALVRLREAD 207
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|182398 PRK10350, PRK10350, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.003
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
+Q+ Q Q Q QQ QQ+ +QQ Q + QQQ Q Q+ QR Q Q + Q
Sbjct: 36 QQRMQTQMQTQQIQQKGMLNQQLKTQTRLQQQHLQNQINNNS---QRVQQGQPGNNPARQ 92
Query: 148 QQQQQQQ--------QPPQQPQQQQPQQQQQRRD 173
Q P QQ +++ D
Sbjct: 93 QMLPNTNGGMLNSNRNPDSSLNQQHMLPERRNGD 126
|
Length = 145 |
| >gnl|CDD|197397 cd10149, ClassIIa_HDAC_Gln-rich-N, Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9) | Back alignment and domain information |
|---|
Score = 37.4 bits (86), Expect = 0.003
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 89 QQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQ 148
+QQ QQ+ +QQQQ Q Q + Q+Q + +Q + Q LQ H +QQQ+ QQ
Sbjct: 6 EQQLQQELLALKQQQQIQKQLLIAEFQKQHENLTRQHEAQ---LQEHIKQQQEMLAIKQQ 62
Query: 149 QQQQQQQPPQQPQQQQPQQQQQRRD 173
Q+ ++Q + Q+Q+ + ++QRR+
Sbjct: 63 QELLEKQRKLEQQRQEQELEKQRRE 87
|
This superfamily consists of a glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDAC9; it is missing in HDAC7. It is referred to as the glutamine-rich domain, and confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors. This domain is able to repress transcription independently of the HDAC's C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.003
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 84 IKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQ 124
+K + Q +QQQQQ QQQ Q Q QQ Q Q
Sbjct: 42 VKEMSKDDQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQ 82
|
Length = 84 |
| >gnl|CDD|197399 cd10163, ClassIIa_HDAC9_Gln-rich-N, Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase | Back alignment and domain information |
|---|
Score = 37.4 bits (86), Expect = 0.003
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 87 REQQQQQQ----QQQQQQQQQ---QQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQ 139
RE+Q QQ+ QQQQQ Q+Q + +Q + +Q Q Q Q+ L++QQ LL QQ+
Sbjct: 5 REKQLQQELLLIQQQQQIQKQLLIAEFQKQHENLTRQHQAQLQEHLKLQQELLAMKQQQE 64
Query: 140 QQHQQQHQQQQQQQQQPPQQPQQQQ 164
++Q +QQ+Q+Q+ + ++QQ
Sbjct: 65 LLEKEQKLEQQRQEQELERHRREQQ 89
|
This family consists of the glutamine-rich domain of histone deacetylase 9 (HDAC9). It belongs to a superfamily that consists of the glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDCA9; it is missing from HDAC7. This domain confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors, and it is able to repress transcription independently of the HDAC C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues. Length = 90 |
| >gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 30/135 (22%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
I+T L QQ++Q Q Q + + Q + + Q + + AQ
Sbjct: 110 IDTVL--LEIQQEEQAAAQAQVAAGFRPKIAALTAEIAALQAEIDEAQAEVNAAYQEAQC 167
Query: 139 Q----------------QQHQQQHQQQQQQ-----------QQQPPQQPQQQQPQQQQQR 171
+ ++ +++ Q + Q Q + +Q
Sbjct: 168 EAEGTGGTGVAGKGPVYKEKREKLDAAQARLETLKARLDAAIAQLEAQKAALERNRQAAV 227
Query: 172 RDGAHLLNGNTNGLL 186
+ +GLL
Sbjct: 228 AE-KQARIEANDGLL 241
|
This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important. Length = 297 |
| >gnl|CDD|234937 PRK01294, PRK01294, lipase chaperone; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 16/112 (14%)
Query: 76 ASYIETQLIKAREQQQQQQQQQQ-----QQQQQQQQSQQPPHQQQQQ----------QQQ 120
A+ R Q+ Q+QQ Q Q S Q + Q +Q
Sbjct: 213 AALEAQLPEDLRAALQESQRQQALLQQLAQLQASGASPQELRLMRAQLVGPEAAQRLEQL 272
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
QQ+ QQ AQ+ Q Q +Q Q Q +QQ+ Q+ R
Sbjct: 273 DQQRAAWQQRYDDYLAQRAQILNAAGLSPQDRQAQ-IAQLRQQRFSPQEALR 323
|
Length = 336 |
| >gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQIL-LQRHAQQQQQHQQQ 145
Q +Q QQ + QQ +P + +QQ Q M QI L R + Q Q
Sbjct: 534 AAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLARSGDRDQAKQLL 593
Query: 146 HQQQQQQQQQPPQQPQQQQPQQQQQ 170
Q QQ QP Q Q Q
Sbjct: 594 SQLQQMMNNLQMGQPGQGQQMGDQS 618
|
Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model. Length = 851 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 88 EQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQ 147
E+ Q +Q +Q + Q+Q Q Q Q Q QQ + + L +Q QQ Q
Sbjct: 776 EETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLA 835
Query: 148 QQQQQ----QQQPPQQPQQQQPQQQQQR 171
QQ ++ Q + QQ +Q +QQQ+
Sbjct: 836 QQLRENTTRQGEIRQQLKQDADNRQQQQ 863
|
Length = 1047 |
| >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 89 QQQQQQQQ------QQQQQQQQQQSQQPPHQQQQQQQQQQQQL----------------Q 126
QQQQQQ + QQ+ + QQ Q +++ Q QL +
Sbjct: 238 AQQQQQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWE 297
Query: 127 MQQILLQRHAQQQQQHQQ---QHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
Q A +QQ ++ + Q + + +Q + Q Q++
Sbjct: 298 RIQEQSAALAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQS 347
|
Length = 1047 |
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 14/71 (19%), Positives = 32/71 (45%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
K Q+ Q +QQ + + + +QQ + Q +Q Q++Q+L Q+ A +
Sbjct: 652 KQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDD 711
Query: 145 QHQQQQQQQQQ 155
+ + ++ +
Sbjct: 712 FRELRTERLAK 722
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 69 EKHSEVAASYIETQLIKAREQQQQQQQQQQ-----QQQQQQQQSQQPPHQQQQQQQQQQQ 123
++ + + + Q AR +Q Q Q + +Q++Q + Q Q+Q Q
Sbjct: 123 QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASAT 182
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQ-----QPQQQQPQQQQQRRD 173
QL+ Q + L+ + Q +Q Q + Q + QQ Q Q+RD
Sbjct: 183 QLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237
|
Length = 499 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQ---QQQQQQQQQQQLQMQQILLQRH 135
+ +L AR+ + QQ+ + +Q Q Q Q++Q + Q Q LQ Q LQ
Sbjct: 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQAS 180
Query: 136 AQQ-----------QQQHQQQHQQQQQQQQQPPQQPQQ-QQPQQQQQRRDGA 175
A Q Q +Q+ Q + + ++ + Q+ A
Sbjct: 181 ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQA 232
|
Length = 499 |
| >gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 6/116 (5%)
Query: 63 FIARTNEKHSEVAASYIETQLIKAREQQQQQQ--QQQQQQQQQQQQSQQPPHQQQQQQQQ 120
+ R + E+AA +E L+ + + +Q + Q + Q ++ + + QQ
Sbjct: 26 RLGRLEQMLGELAAV-LEQLLLLLAFRAEAEQLRTFARSLQALNLELIQELNELKARLQQ 84
Query: 121 QQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAH 176
Q Q + Q LL + Q + Q+ + + + + QQ ++
Sbjct: 85 QLLQSREQLQLLI---ESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPL 137
|
Length = 448 |
| >gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional | Back alignment and domain information |
|---|
Score = 36.9 bits (85), Expect = 0.004
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 82 QLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQI 130
++ K+ ++ + Q +QQQQQ Q Q P+Q + Q QQ Q QQ+
Sbjct: 36 RIFKSEVKEMSKDDQTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQV 84
|
Length = 84 |
| >gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151) | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 11/64 (17%), Positives = 41/64 (64%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQ 152
Q+ + Q+ ++++ Q +Q+++++ ++ Q ++++ L++R + +Q ++ ++ ++Q
Sbjct: 48 NQKPELQRVLEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQ 107
Query: 153 QQQP 156
+Q P
Sbjct: 108 EQIP 111
|
This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 122 |
| >gnl|CDD|217298 pfam02948, Amelogenin, Amelogenin | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.004
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 96 QQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQM---QQILLQRHAQQQQQHQQQHQQQQQQ 152
Q QQQQ + PH Q QQ + + ++ Q Q QH Q
Sbjct: 55 PQMPQQQQSAHPKLTPHHQLLILPPQQPMMPVPGHHPMVPMTGQQPHLQPPAQHPLQPTY 114
Query: 153 QQQP-PQQPQQQQPQQQQQ 170
Q P PQQP QP Q Q
Sbjct: 115 GQNPQPQQPTHTQPPVQPQ 133
|
Amelogenins play a role in biomineralisation. They seem to regulate the formation of crystallites during the secretory stage of tooth enamel development. thought to play a major role in the structural organisation and mineralisation of developing enamel. They are found in the extracellular matrix. Mutations in X-chromosomal amelogenin can cause Amelogenesis imperfecta. Length = 174 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 10/97 (10%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 79 IETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQ 138
+E ++ + E+ + ++ + +++ ++ ++ Q +++ ++ +Q+ + L R +
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
Query: 139 QQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGA 175
+Q +++ Q ++ + + + ++ ++R + A
Sbjct: 742 VEQLEERIAQLSKELTE-----LEAEIEELEERLEEA 773
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|234354 TIGR03789, pdsO, proteobacterial sortase system OmpA family protein | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 113 QQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
Q QQ+QQ L +Q L++ + QQ Q + QQ QQQ
Sbjct: 84 QHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQ 126
|
A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. Length = 239 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 915 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.91 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.88 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.88 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.87 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.87 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.84 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.83 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.83 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.82 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.81 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.81 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.78 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.78 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.77 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.77 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.76 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.76 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.76 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.75 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.74 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.73 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.73 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.73 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.7 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.69 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.69 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.67 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.66 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.66 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.64 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.62 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.61 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.6 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.59 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.59 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.58 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.56 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.56 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.56 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.55 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.55 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.55 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.54 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.53 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.52 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.51 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.51 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.51 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.48 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.45 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.45 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.44 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.44 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.43 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.42 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.42 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.4 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.4 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.4 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.39 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.39 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.37 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.35 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.31 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.3 | |
| KOG4594 | 354 | consensus Sequence-specific single-stranded-DNA-bi | 99.3 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.29 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.28 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.28 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.26 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.26 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.24 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.24 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.23 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.21 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.2 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.2 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.18 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.18 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.17 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.17 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.16 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.14 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.13 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.1 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.09 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.09 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.06 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.06 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.01 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.99 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.98 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.98 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.96 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.96 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.91 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.9 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.89 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.87 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.85 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.85 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.85 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.85 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.85 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.84 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.83 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.81 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.81 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.8 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.78 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.75 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.74 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.72 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.7 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.67 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.63 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.62 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.6 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.6 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.58 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.58 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.57 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.56 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.54 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.53 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.53 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.5 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.49 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.49 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.48 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.45 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.44 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.43 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.42 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.36 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.34 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.32 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.3 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.3 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.3 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.29 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.25 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.24 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.24 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.23 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.23 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.23 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.18 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.18 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.17 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.16 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.14 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.09 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.09 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.08 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.08 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.06 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.05 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.05 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.0 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.0 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.95 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.92 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.91 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.89 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.87 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.87 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.85 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.78 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.76 | |
| PRK10115 | 686 | protease 2; Provisional | 97.73 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.71 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.68 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.65 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.63 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.61 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.59 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.59 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.58 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.44 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.37 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.36 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.35 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.28 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.27 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.26 | |
| PRK10115 | 686 | protease 2; Provisional | 97.25 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.25 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.22 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.22 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.21 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.17 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.13 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.12 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.11 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.09 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.06 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.05 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.03 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.96 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.95 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.91 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.88 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.82 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.78 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.76 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.75 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.73 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.73 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.71 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.7 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.64 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.61 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.59 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.56 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.53 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.52 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.5 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.48 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.39 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.39 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.31 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.22 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.2 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.2 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.19 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.17 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.13 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.1 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.08 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 96.08 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 96.07 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.97 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 95.94 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.91 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 95.88 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.86 | |
| PLN02153 | 341 | epithiospecifier protein | 95.81 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.57 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.44 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.4 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.39 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.39 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 95.37 | |
| PLN02193 | 470 | nitrile-specifier protein | 95.32 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.19 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 95.06 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 94.99 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.98 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.84 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.81 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.78 | |
| PLN02153 | 341 | epithiospecifier protein | 94.77 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 94.63 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.6 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.6 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.53 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.52 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 94.44 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.37 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.32 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 94.23 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.93 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 93.9 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.8 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.76 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.68 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 93.66 | |
| PLN02193 | 470 | nitrile-specifier protein | 93.63 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.47 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 93.46 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 93.44 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.25 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.15 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 93.11 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 93.06 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.03 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 92.84 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 92.75 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 92.74 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 92.69 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 92.51 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 92.41 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 92.27 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.13 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.07 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 91.9 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 91.73 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 91.65 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 91.52 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 91.47 | |
| KOG2109 | 788 | consensus WD40 repeat protein [General function pr | 91.47 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 91.39 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 91.2 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 91.18 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 91.16 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 90.9 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 90.9 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 90.78 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 90.64 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 90.12 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 90.08 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.94 | |
| KOG2006 | 1023 | consensus WD40 repeat protein [General function pr | 89.91 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 89.73 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.67 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 89.47 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 89.36 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.21 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 89.1 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=380.30 Aligned_cols=310 Identities=26% Similarity=0.447 Sum_probs=276.6
Q ss_pred ceEEEEcCCCceec---CCCCeeEeCCCchhhhhhhhhcccCCCCCceeeecccCCCCCCCCCCcccccccCccceeeeE
Q 002495 554 PLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 630 (915)
Q Consensus 554 ~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 630 (915)
-++.|+|+|.++++ +...+|||+.+- .+..+
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~Te----------------------------------------------Tp~~t 152 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTE----------------------------------------------TPLFT 152 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCC----------------------------------------------Cccee
Confidence 46789999998887 335588887542 35567
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcee-eEeccCCCcEEEEEECC-----CCCEEEEEeCCCeEEEE
Q 002495 631 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVW 704 (915)
Q Consensus 631 l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~-~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~I~iW 704 (915)
.++|...|.||+|+|||+.||+|+.||+|++||.++++.+ ..|.+|...|++|+|.| ..++||+++.||.|+||
T Consensus 153 ~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIW 232 (480)
T KOG0271|consen 153 CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW 232 (480)
T ss_pred ecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEE
Confidence 8999999999999999999999999999999999887654 67899999999999976 67799999999999999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCc---eEEE-----------Eec
Q 002495 705 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMR-----------FQP 770 (915)
Q Consensus 705 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~---~~v~-----------~sp 770 (915)
|+.. +.++..+.+|+..|+|++|-- ..+|++++.|++|++|+...|++.+.++++. +.++ |.+
T Consensus 233 d~~~-~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 233 DTKL-GTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred EccC-ceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccc
Confidence 9987 889999999999999999974 4589999999999999999999998887753 2332 333
Q ss_pred CCC-------------------------EEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-
Q 002495 771 HLG-------------------------RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED- 823 (915)
Q Consensus 771 ~~~-------------------------~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d- 823 (915)
.+. ++++++.|.++.+|+.... +++..+.+|..-|+.+.|+||+++|++++.|
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 333 4899999999999987654 6888999999999999999999999999999
Q ss_pred eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEE
Q 002495 824 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 902 (915)
Q Consensus 824 ~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~L 902 (915)
.|++||.++| +.+..+++|-..|+.++|+.|.+.|++|+.|.+|++||+++.++. .+.+|.+.|.++.|+|||..+
T Consensus 390 SVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 390 SVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred ceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCcee
Confidence 9999999988 788899999999999999999999999999999999999999988 889999999999999999999
Q ss_pred EEEecCCcEEEcC
Q 002495 903 ASASHDKFVKLWK 915 (915)
Q Consensus 903 asgs~Dg~I~IWd 915 (915)
++|+.|..++||+
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 9999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=366.60 Aligned_cols=288 Identities=23% Similarity=0.393 Sum_probs=263.4
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWd 705 (915)
++...+.+|.+.|.|++|+|+|++||+|+.|.++++||+.+..+.++.++|...|.||+|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCC--CEEEEEE
Q 002495 706 ADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL--GRYLAAA 779 (915)
Q Consensus 706 l~~~~~~~~~~~~h~~~V~sl~fsp~----~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~--~~ll~~~ 779 (915)
.+++....+.+.+|...|++|+|.|- ...+|++++.||.|+|||+..+.++..+.++...+.+...| +.+++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS 265 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS 265 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC
Confidence 99988888999999999999999873 23478899999999999999999999998877655554444 6888899
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEc-----------CCC-------------------------CEEEEEeCC
Q 002495 780 AENVVSILDAETQACRLSLQGHTKPIDSVCWD-----------PSG-------------------------ELLASVSED 823 (915)
Q Consensus 780 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~s-----------pdg-------------------------~~Las~s~d 823 (915)
.|++|++|+...+++..++++|...|+.++++ |.+ +.|++|++|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 99999999999999999999999999998876 223 359999999
Q ss_pred -eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002495 824 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 901 (915)
Q Consensus 824 -~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~ 901 (915)
++.+|+-... .+++....+|...|..+.|+||+++|++++.|+.|++||.++|+.+ .+.+|-+.|+.++|+.|.++
T Consensus 346 ~tlflW~p~~~--kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 346 FTLFLWNPFKS--KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred ceEEEeccccc--ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 9999987533 3678888999999999999999999999999999999999999988 88999999999999999999
Q ss_pred EEEEecCCcEEEcC
Q 002495 902 VASASHDKFVKLWK 915 (915)
Q Consensus 902 Lasgs~Dg~I~IWd 915 (915)
|++|+.|.++++||
T Consensus 424 lVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWD 437 (480)
T ss_pred EEEcCCCceEEEEE
Confidence 99999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=355.23 Aligned_cols=287 Identities=27% Similarity=0.441 Sum_probs=266.9
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCC--CCEEEEEeCCCeE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTV 701 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~I 701 (915)
.......--+.+.+|..+.|+.|++.||||+.+|.++||+..+...+.+|++|...|.++.|+|. +..||+|+.||+|
T Consensus 164 ~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 164 SLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred hhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCce
Confidence 34444555577899999999999999999999999999999999999999999999999999996 5689999999999
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEE
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 778 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~ 778 (915)
++|++++ ..++..+.+|...|..++|+|+|.+ |+|++.|.+-++||++++..+...++ ++.+++|.++|..+++|
T Consensus 244 klw~~~~-e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 244 KLWKLSQ-ETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred eeeccCC-CcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 9999997 6889999999999999999999875 45999999999999999987766555 56789999999999999
Q ss_pred EcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC-
Q 002495 779 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP- 856 (915)
Q Consensus 779 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp- 856 (915)
+.|..-+|||+++++++..+.+|.++|.+|.|+|+|..|++|+.| +++|||++.. .+++.+..|.+.|+.+.|+|
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEeccc
Confidence 999999999999999999999999999999999999999999999 9999999876 55899999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 857 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 857 dg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.|.+|++++.|++++||...+..++ .+.+|++.|.++++++|+.+|+|++.|.+|++|.
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 7889999999999999999999988 8899999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=324.12 Aligned_cols=291 Identities=20% Similarity=0.374 Sum_probs=264.7
Q ss_pred CccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeE
Q 002495 622 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 701 (915)
Q Consensus 622 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 701 (915)
.+.++..++|++|.++|+++.|++|.++|++++.||++.|||.-+...++.++.....|..++|+|.++++|+|+.|+..
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 44778889999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEECCCC--C---ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEec-CC
Q 002495 702 RVWDADNP--G---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP-HL 772 (915)
Q Consensus 702 ~iWdl~~~--~---~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp-~~ 772 (915)
.||++.+. . ...+.+.+|++.+.|+.|..| ..+ ++++.|.++.+||++++..+..|.++ +.++.+.| +.
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~i-lT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHI-LTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCC-Cce-EecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 99999853 1 345778999999999999985 344 49999999999999999999999875 46678899 88
Q ss_pred CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEE
Q 002495 773 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 851 (915)
Q Consensus 773 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~ 851 (915)
+.+++++.|+..++||++.+.++.+|.+|+..|++|+|.|+|.-|++|++| +.++||++...+.. +.........|++
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a-~ys~~~~~~gitS 278 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELA-VYSHDSIICGITS 278 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEe-eeccCcccCCcee
Confidence 999999999999999999999999999999999999999999999999999 99999999874432 2233344567999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 852 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 852 i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
++|+..|++|++|..|..+.+||.-.++.+ .+.+|++.|.|+..+|||.-|++|++|.+||||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999988887 8889999999999999999999999999999994
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=307.92 Aligned_cols=286 Identities=24% Similarity=0.420 Sum_probs=262.0
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC-CCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~-t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWd 705 (915)
++..+.+|++.|+++.|+|+|.+||+|+.|..|.+|++. ..+....+++|+++|..+.|.+|++.|++++.|++|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 345578999999999999999999999999999999965 6677888999999999999999999999999999999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--ecCceEEEEecCCCEEEEEEcCCe
Q 002495 706 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 783 (915)
Q Consensus 706 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~ 783 (915)
+++ ++.++.+++|...|++++-+.-|..++++++.|+++++||+++..+++++ +.....+.|...+..+++++-|+.
T Consensus 119 ~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 998 88999999999999999977778889999999999999999999999998 556788999999999999999999
Q ss_pred EEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc-ceEEEeccCCC----ceEEEEEeCC
Q 002495 784 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGN----KFHSCVFHPT 857 (915)
Q Consensus 784 I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~-~~i~~~~~~~~----~i~~i~~spd 857 (915)
|++||++.....+++.+|.+.|+.+..+++|.++.+-+.| ++++||++..... .|+..+.++.. ....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 9999999999999999999999999999999999999999 9999999875433 45766665533 3567899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002495 858 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 913 (915)
Q Consensus 858 g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~I 913 (915)
+..+-+|+.|+.+++||.....++ .+.+|.+.|++++|+|...+|.+++.|++|++
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999997766 89999999999999999999999999999986
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=326.56 Aligned_cols=274 Identities=24% Similarity=0.392 Sum_probs=250.5
Q ss_pred CCCCceEEEEcCCCceec---CCCCeeEeCCCchhhhhhhhhcccCCCCCceeeecccCCCCCCCCCCcccccccCccce
Q 002495 550 TTSKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFK 626 (915)
Q Consensus 550 ~~~~~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 626 (915)
+.......|+.|+..+++ ++..+||++.++ .
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~----------------------------------------------~ 208 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC----------------------------------------------N 208 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCc----------------------------------------------c
Confidence 334456778888887766 566677776543 4
Q ss_pred eeeEeecCCCCeEEEEEcCC--CCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 002495 627 EANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 704 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspd--g~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iW 704 (915)
.+.+|++|++.|.++.|+|. +..||||+.||+|++|++++..++..+++|...|..++|+|+|++|+|+|.|.+-++|
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW 288 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW 288 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence 56789999999999999996 6799999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEecCCCEEEEEEcC
Q 002495 705 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAE 781 (915)
Q Consensus 705 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~d 781 (915)
|+++ +..+....||...|.+|+|++||. ++++|+.|..-+|||+++++++..+.++ +..|.|+|+|-.+++|+.|
T Consensus 289 D~~t-k~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 289 DLET-KSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred cccc-chhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCC
Confidence 9998 677778889999999999999975 7889999999999999999999999875 4678999999999999999
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 859 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~ 859 (915)
++++|||++...+++++.+|..-|+.|+|+| .|.+|++++.| +++||..++. .+++.+.+|++.|.++.+++++.
T Consensus 367 nt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~ 443 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQ 443 (459)
T ss_pred CcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCc
Confidence 9999999999999999999999999999998 78899999999 9999998776 78999999999999999999999
Q ss_pred EEEEEEcCCeEEEEE
Q 002495 860 SLLVIGCYQSLELWN 874 (915)
Q Consensus 860 ~l~s~s~dg~I~iwd 874 (915)
+|++++.|++|++|.
T Consensus 444 ~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 444 AIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEeccCceeeecc
Confidence 999999999999995
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=305.87 Aligned_cols=287 Identities=23% Similarity=0.398 Sum_probs=263.5
Q ss_pred ccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEE
Q 002495 623 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 702 (915)
Q Consensus 623 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~ 702 (915)
..|+..+.+.+|.+.|.||++.|...+|++|+.|++|+|||+.+++++.++.+|...|..+++++--.||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEecCCCEEEEEE
Q 002495 703 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAA 779 (915)
Q Consensus 703 iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~ 779 (915)
.||++. .+.++.+.||-..|+|++.+|.-+ +|++|+.|.++|+||+++...+.++.++ +..+.+.+.+..+++++
T Consensus 219 CwDLe~-nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 219 CWDLEY-NKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEechh-hhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 999997 788999999999999999999854 6669999999999999999999988765 56677889999999999
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC
Q 002495 780 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 859 (915)
Q Consensus 780 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~ 859 (915)
.|++|++||++.++...++..|...|.+++.+|....|++++.|.|+-|++..+ ..+..+.+|...|.+++...|+
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-
Confidence 999999999999999999999999999999999999999999999999999766 5566688889999999988776
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEE---------cccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 860 SLLVIGCYQSLELWNMSENKTMTL---------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 860 ~l~s~s~dg~I~iwd~~~~~~~~~---------~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
++++|+.+|.|.+||.+++..... ...+..|++.+|+..|..|++|..|.+|++|+
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 688899999999999999865511 12456899999999999999999999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=290.60 Aligned_cols=285 Identities=21% Similarity=0.378 Sum_probs=245.1
Q ss_pred cceeeeEeecCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECC-----CCceeeEeccCCCcEEEEEECCCCCEEEEEeC
Q 002495 624 SFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTD-----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 697 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~V~vwd~~-----t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~ 697 (915)
.+....++++|++.|+.++..+. ...|++++.|++|.+|++. .|..++.+++|+..|..+..++||.+.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 34566789999999999999886 4689999999999999875 46778999999999999999999999999999
Q ss_pred CCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec----CceEEEEecC--
Q 002495 698 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPH-- 771 (915)
Q Consensus 698 Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~-- 771 (915)
|+++|+||+.+ ++..+.|.+|...|.+++|++|... |++|+.|.+|++|++...-....... -+.+++|+|.
T Consensus 84 D~~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~q-ivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 84 DGTLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNRQ-IVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred cceEEEEEecC-CcEEEEEEecCCceEEEEecCCCce-eecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 99999999998 6889999999999999999999665 55999999999999986544443333 3689999999
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceE
Q 002495 772 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 850 (915)
Q Consensus 772 ~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 850 (915)
...|+.++.|++|++||+++.+....+.+|.+.++.++++|||.++++|+.| .+.+||++.+ +++..+. +...|.
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~ 237 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVN 237 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEe
Confidence 5788889999999999999999999999999999999999999999999999 9999999877 4555544 578899
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E----Eccc-----CCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 851 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-T----LTAH-----EGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 851 ~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~----~~~h-----~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+++|+|+... ++...+..|+|||+.++.++ . +.+. .-...+++|+.||..|++|-.|+.|++|.
T Consensus 238 sl~fspnryw-L~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 238 SLCFSPNRYW-LCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred eEEecCCcee-EeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 9999998654 44555667999999998876 1 2222 23456789999999999999999999994
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=308.60 Aligned_cols=359 Identities=22% Similarity=0.354 Sum_probs=280.0
Q ss_pred CceEEEEcCCCceec---CCCCeeEeCCCchhh------------------hhhhhhcccCCCCCcee-eecccCCCCCC
Q 002495 553 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELR------------------ADMDRLVEDGSLDDNVE-SFLSHDDTDPR 610 (915)
Q Consensus 553 ~~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~------------------~~~~~~~~~gs~d~~v~-~~~~~~~~~~~ 610 (915)
--...|||.|.|.++ ++.++|||....+.. .+-.|+.+.|.-.+++. .|+.+.+....
T Consensus 62 vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG 141 (603)
T KOG0318|consen 62 VTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG 141 (603)
T ss_pred eEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc
Confidence 346788999998887 456699998762211 12233444333333333 23332221111
Q ss_pred C------------------------CCCcccccccCccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 002495 611 D------------------------AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT 666 (915)
Q Consensus 611 ~------------------------~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t 666 (915)
+ .......+..+..|+...+++.|..-|.|+.|+|||.++|+++.||+|.|||-.+
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 1 1112344556778999999999999999999999999999999999999999999
Q ss_pred CceeeEec---cCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC---------------------------------
Q 002495 667 LKSKTNLE---EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--------------------------------- 710 (915)
Q Consensus 667 ~~~~~~l~---~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~--------------------------------- 710 (915)
++.+..|. +|.+.|.+|.|+||+..|++++.|.+++|||+.+..
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~ 301 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT 301 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence 99999998 899999999999999999999999999999997521
Q ss_pred ---------ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-------------------------
Q 002495 711 ---------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------------------- 756 (915)
Q Consensus 711 ---------~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~------------------------- 756 (915)
..+..+.||...|+++..++++.+ |++|+.||.|.-||+.++..-
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVSPDGKT-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI 380 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEcCCCCE-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence 123455689999999999999865 559999999999998654210
Q ss_pred ------EEe------------------------------------------e-----------cCceEEEEecCCCEEEE
Q 002495 757 ------RVF------------------------------------------K-----------GGTAQMRFQPHLGRYLA 777 (915)
Q Consensus 757 ------~~~------------------------------------------~-----------~~~~~v~~sp~~~~ll~ 777 (915)
+.+ . -...+++++|++..+++
T Consensus 381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE
Confidence 000 0 01234678899999999
Q ss_pred EEcCCeEEEEECCCce--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002495 778 AAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 854 (915)
Q Consensus 778 ~~~dg~I~i~D~~t~~--~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 854 (915)
|+.|+.|+||.+.... ....+..|..+|++|+|+||+.||+++... .|.+||+.+... ....+.-|..+|.+++|
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aW 538 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAW 538 (603)
T ss_pred ecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEe
Confidence 9999999999998754 334566799999999999999999999988 999999987754 44555668899999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcE-E-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 855 HPTYPSLLVIGCYQSLELWNMSENKT-M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 855 spdg~~l~s~s~dg~I~iwd~~~~~~-~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+|+..++++|+-|-.|.||+++.... + ...+|...|+.+.|-.+ ..|++.+.|.+|++|.
T Consensus 539 sP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 539 SPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWN 600 (603)
T ss_pred CCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEec
Confidence 99999999999999999999986543 3 55689999999999654 4788999999999995
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=329.55 Aligned_cols=287 Identities=30% Similarity=0.550 Sum_probs=256.3
Q ss_pred ceeeeEeecC-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--eeeEeccCCCcEEEEEECCCCCEEEEEeCCCeE
Q 002495 625 FKEANSVRAS-TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 701 (915)
Q Consensus 625 ~~~~~~l~~H-~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 701 (915)
+..+..+..| ...|.|+.|+++|++|++++.|+.|++|++.+.+ ....+.+|...|.+++|++++++|++++.|++|
T Consensus 148 ~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 148 FSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred ceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceE
Confidence 3335555554 8899999999999999999999999999998777 778888999999999999999999999999999
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEE
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 778 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~ 778 (915)
+|||+...+..++++.+|...|++++|+|++ .++++|+.|++|+|||++++++++.+.+ .+..++|.+++..++++
T Consensus 228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred EEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 9999976678999999999999999999998 7888999999999999999999999876 45778899999999999
Q ss_pred EcCCeEEEEECCCce--EEEEecCCCCC--eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc---eE
Q 002495 779 AAENVVSILDAETQA--CRLSLQGHTKP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---FH 850 (915)
Q Consensus 779 ~~dg~I~i~D~~t~~--~~~~l~~h~~~--V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~---i~ 850 (915)
+.|+.|+|||+.++. ++..+..+... +++++|+|++++|++++.| .+++||+..+ .++..+.+|... +.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIF 383 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEe
Confidence 999999999999998 67777777665 9999999999999999999 9999999877 556666666554 44
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc-CCCeEEEEEeCCCCEEEEEe--cCCcEEEcC
Q 002495 851 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASAS--HDKFVKLWK 915 (915)
Q Consensus 851 ~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spdg~~Lasgs--~Dg~I~IWd 915 (915)
+...++.+.++++++.|+.|++||+.++..+ .+.+| ...|..+++++...++++++ .|+.|++|+
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 4456789999999999999999999987766 78899 89999999999999999998 799999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=304.78 Aligned_cols=288 Identities=26% Similarity=0.502 Sum_probs=268.3
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~i 703 (915)
.+.+...+.+|...|+.+-|+|+-.++++++.|++|++||..+++....+++|.+.|.+|.|+..|++||+++.|-.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 55677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCc---eEEEEecCCCEEEEEEc
Q 002495 704 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 704 Wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~ 780 (915)
||..+-..+++.+.+|...|.+++|-|.|+++ ++|+.|.+|+.|++.++-|+.+|.++. ..++...|+..+++++.
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~i-lS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCee-eecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 99987667888999999999999999998655 599999999999999999999998865 45667778788888888
Q ss_pred CCeEEEEECCCceEEEEecCCCCCeEEEEEcCC---------------CCEEEEEeCC-eEEEEECCCCCCcceEEEecc
Q 002495 781 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---------------GELLASVSED-SVRVWTVGSGSEGECVHELSC 844 (915)
Q Consensus 781 dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd---------------g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~ 844 (915)
|.+|++|-+.++.|...+.+|+.+|.|++|.|. +.++++++.| +|++||+.++ .|+.++.+
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~g 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVG 332 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEec
Confidence 999999999999999999999999999999773 2489999999 9999999888 89999999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 845 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 845 ~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
|.++|..++|+|.|+||+++..|++|+|||++++.++ .+..|..-|++++|+.+..+++||+-|-.+++|.
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999998 7889999999999999999999999999999994
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=312.68 Aligned_cols=275 Identities=22% Similarity=0.444 Sum_probs=246.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEE
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 714 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~ 714 (915)
...|..|.|.|+|+.|++|+..|.+.+|+..+......+..|..+|+++.|++++.++++|+.+|.|++|+..- ..++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhH
Confidence 45799999999999999999999999999987777778889999999999999999999999999999999874 3344
Q ss_pred EeccCC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002495 715 TFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE 790 (915)
Q Consensus 715 ~~~~h~-~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 790 (915)
.+..|. ..|++++|+|++ ..|++|++||+|+|||....+..+.+.+ .+.++.|+|..+.+++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 455554 999999999964 4566999999999999999887777766 46889999999999999999999999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC-CEEEEEEcCC
Q 002495 791 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQ 868 (915)
Q Consensus 791 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg-~~l~s~s~dg 868 (915)
++.|+.++.+|...|..+.|.+++++|++++.| .+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 999999999999999999999999999999999 9999999855 5677788899999999999954 5677889999
Q ss_pred eEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 869 SLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 869 ~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.|..|.+...+.+ .-.+|+..|++++|+|-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999855555 4558999999999999999999999999999993
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=281.27 Aligned_cols=266 Identities=21% Similarity=0.438 Sum_probs=239.4
Q ss_pred CEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-eEEEeccCCCCeEEE
Q 002495 648 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSL 726 (915)
Q Consensus 648 ~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~-~~~~~~~h~~~V~sl 726 (915)
-+|+++++|.+|++|...+|++.+++.....-|..+.+.|+++.||+++.- .||+||+++... ++.+|.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 489999999999999999999999999999999999999999999999864 599999997554 799999999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC-CCC
Q 002495 727 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HTK 803 (915)
Q Consensus 727 ~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~-h~~ 803 (915)
.|..+|+ .+++|++||+++|||++...+-+.|. ..+.++..+|+-..|+++..+|.|+|||+.+..+...+.. ...
T Consensus 90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9999976 55699999999999999988877664 5788999999999999999999999999999877766543 456
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCC---CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002495 804 PIDSVCWDPSGELLASVSED-SVRVWTVGSG---SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 879 (915)
Q Consensus 804 ~V~si~~spdg~~Las~s~d-~I~iwdl~s~---~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~ 879 (915)
.|.++...|||.+|+.+... ..++|++-+. .....+..+..|...+..|.++||+++|++++.|.+++||+.++.-
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 79999999999999988877 9999999764 3456778889999999999999999999999999999999999882
Q ss_pred EE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 880 TM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 880 ~~--~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.. .+.+|...|+.++|+.|+.||++|+.|+.+|+|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 22 6789999999999999999999999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=294.83 Aligned_cols=282 Identities=30% Similarity=0.566 Sum_probs=251.6
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 629 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~ 708 (915)
.++++|.+.|++++|++++++|++++.||.|++|++.+++....+..|...|.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45779999999999999999999999999999999998888889999999999999999999999999999999999997
Q ss_pred CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEEEcCCeEE
Q 002495 709 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS 785 (915)
Q Consensus 709 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~ 785 (915)
...+..+..|...|.+++|++++ .++++++.|+.|++||+++++....+.. .+.++.|++++..+++++.++.|+
T Consensus 83 -~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 -GECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred -ccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 56677788899999999999984 4666777799999999998888777653 467889999977776666699999
Q ss_pred EEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002495 786 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 864 (915)
Q Consensus 786 i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~ 864 (915)
+||+++++.+..+..|...|.+++|+++++.|++++.+ .|++||++.+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 99999999988899999999999999999888888877 9999999875 5566666777899999999998888888
Q ss_pred EcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 865 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 865 s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|+|||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 87999999999987766 6678999999999999999999999999999997
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=297.02 Aligned_cols=281 Identities=24% Similarity=0.473 Sum_probs=245.6
Q ss_pred eeeEeecCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCC--Cceee--Eec----------cCCCcEEEEEECCCCCE
Q 002495 627 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSKT--NLE----------EHSSLITDVRFSPSMPR 691 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~V~vwd~~t--~~~~~--~l~----------~h~~~V~~l~fspdg~~ 691 (915)
.++.++ |+..|.+++|+|-.. +|++|+.|-+.++|++.. ..... .|+ ..+..|++|+|+.+|..
T Consensus 171 ~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 171 KAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred ceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 344555 999999999999665 999999999999999863 11111 111 12467999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCc---eEEEE
Q 002495 692 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRF 768 (915)
Q Consensus 692 Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~ 768 (915)
||+|+.||.++||+.. +..+.++..|.++|.+|.|+.+|.+++ +++.|+++.+||..++.+...|..+. ..+.|
T Consensus 250 LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred EEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 9999999999999997 577889999999999999999987665 99999999999999998887766433 34666
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCC
Q 002495 769 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 847 (915)
Q Consensus 769 sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~ 847 (915)
..+ ..|++++.|+.|+|+-+....++.++.+|.++|.++.|+|.|.+|+++++| +++||.+... .+++.+..|..
T Consensus 327 ~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hsk 402 (524)
T KOG0273|consen 327 QSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSK 402 (524)
T ss_pred ecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhcc
Confidence 654 678888999999999999999999999999999999999999999999999 9999998655 78888899999
Q ss_pred ceEEEEEeCCC---------CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 848 KFHSCVFHPTY---------PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 848 ~i~~i~~spdg---------~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.|..+.|+|++ ..+++++.|++|++||+..+.++ .+..|..+|++++|+|+|+|+|+|+.||.|+||+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999999975 46999999999999999999988 7889999999999999999999999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=272.35 Aligned_cols=268 Identities=22% Similarity=0.340 Sum_probs=236.1
Q ss_pred ccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--eeeEeccCCCcEEEEEECCCCCEEEEEeCCCe
Q 002495 623 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 700 (915)
Q Consensus 623 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~ 700 (915)
.+.++.+++.-..+.|+.+.+.||++.||+++. -.|++||+.+++ ++.+|++|...|+++.|..+|+++++|++||+
T Consensus 28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt 106 (311)
T KOG0315|consen 28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT 106 (311)
T ss_pred hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence 356788889888899999999999999999984 589999998654 68999999999999999999999999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----cCceEEEEecCCCEEE
Q 002495 701 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYL 776 (915)
Q Consensus 701 I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~ll 776 (915)
++|||++. -.+-+.+ .|..+|+++..+|+-..|| +|+.+|.|++||+.+..|.+.+- ..+.++.+.+++..++
T Consensus 107 ~kIWdlR~-~~~qR~~-~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 107 VKIWDLRS-LSCQRNY-QHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLA 183 (311)
T ss_pred EEEEeccC-cccchhc-cCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEE
Confidence 99999997 4444444 4779999999999977776 99999999999999887766542 3567789999999999
Q ss_pred EEEcCCeEEEEECCCc------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCce
Q 002495 777 AAAAENVVSILDAETQ------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 849 (915)
Q Consensus 777 ~~~~dg~I~i~D~~t~------~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i 849 (915)
++...|.+++|++-.. +++.++..|...|..+.++||+++|++++.| +++||+.++. .+....+.+|...+
T Consensus 184 a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWv 261 (311)
T KOG0315|consen 184 AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWV 261 (311)
T ss_pred EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceE
Confidence 9999999999998754 5677888999999999999999999999999 9999999765 56667788899999
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002495 850 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 896 (915)
Q Consensus 850 ~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 896 (915)
..|+|+.|+.||++++.|+.+++||+..++.+ ...+|.....|++..
T Consensus 262 Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 262 WDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999999999999999987 677888887777753
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=307.57 Aligned_cols=290 Identities=18% Similarity=0.353 Sum_probs=253.4
Q ss_pred cceeeeEeecCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCC-CceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeE
Q 002495 624 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 701 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~V~vwd~~t-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 701 (915)
.-+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 4467788999999999999999 889999999999999999875 89999999999999999999999999999999999
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEE
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 778 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~ 778 (915)
++||+++ +.++..+. ....++|+.|+|++.++|++|+.|+.|+.||+++++.+..+.. .+..+.|.+.+.+++++
T Consensus 283 KlwDtET-G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTET-GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeecccc-ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999 77776665 4567899999999988888999999999999999998887754 56778999999999999
Q ss_pred EcCCeEEEEECCCceEEEEecC-CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC--CceEEEEE
Q 002495 779 AAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVF 854 (915)
Q Consensus 779 ~~dg~I~i~D~~t~~~~~~l~~-h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~--~~i~~i~~ 854 (915)
+.|+.|+||+.+....+..+.. +.-...||..+|++.++++-+.| .|.||.+...-.....+.+.+|. +.-..|.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9999999999998866554432 33456788999999999999999 99999876554444444555553 44567789
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCC-CEEEEEecCCcEEEcC
Q 002495 855 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 915 (915)
Q Consensus 855 spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~IWd 915 (915)
+|||++|++|..||.+.+||.++.+++ .+.+|+.++..+.|+|.. ..||+|+.||.|+||+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999988 889999999999999954 4799999999999997
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=276.84 Aligned_cols=246 Identities=20% Similarity=0.319 Sum_probs=215.4
Q ss_pred ceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 002495 625 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 704 (915)
Q Consensus 625 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iW 704 (915)
...++.+++|...|..++.++||.+.++++.|+++++||+.+++....|.+|...|.+++|++|++.|++|+.|++|++|
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCceEEEeccC--CCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEecCCCEEEEE
Q 002495 705 DADNPGYSLRTFMGH--SASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAA 778 (915)
Q Consensus 705 dl~~~~~~~~~~~~h--~~~V~sl~fsp~~-~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~ 778 (915)
++.. .+..++..+ .+.|.|++|+|+. +.+|++++.|++|++||+++.+....|.++ ++.+.++|||..++.|
T Consensus 133 nt~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 133 NTLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred eecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence 9985 444444433 7899999999985 557789999999999999999988888664 5778999999999999
Q ss_pred EcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEecc---------CCCce
Q 002495 779 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC---------NGNKF 849 (915)
Q Consensus 779 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~---------~~~~i 849 (915)
+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.+....|+|||+.+.. ++.+++. ..-..
T Consensus 211 gkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~---~v~~l~~d~~g~s~~~~~~~c 286 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA---VVEELKLDGIGPSSKAGDPIC 286 (315)
T ss_pred CCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchh---hhhhccccccccccccCCcEE
Confidence 999999999999999988776 7889999999998888877777799999998873 3333221 13346
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002495 850 HSCVFHPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 850 ~~i~~spdg~~l~s~s~dg~I~iwd~~ 876 (915)
.+++|+++|..|+++..|+.|++|.+.
T Consensus 287 lslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 287 LSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 778999999999999999999999875
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=295.40 Aligned_cols=286 Identities=19% Similarity=0.319 Sum_probs=241.5
Q ss_pred ccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC---CceeeEeccCCCcEEEEEECCCCCEEEEEeCCC
Q 002495 623 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 699 (915)
Q Consensus 623 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 699 (915)
++.++...+..|++.|+-+.||++|++||+++.|.+..||++.. .+.++++.+|..+|..|.|+||.++|++|+.|.
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 46778889999999999999999999999999999999998763 456889999999999999999999999999999
Q ss_pred eEEEEECCCCCceEEEe-ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----cCceEEEEecCCCE
Q 002495 700 TVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGR 774 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~-~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~ 774 (915)
.+++||+.+ +.....+ .+|...+.+++|.||+..++ +|+.|+.|..||++... +...+ ..+.++++.+||.+
T Consensus 292 ~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 292 VLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred heeeccCCc-chhhhhcccCcCCCcceeEEccCCceeE-ecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcE
Confidence 999999998 5544444 34568899999999988765 99999999999998543 33332 24678999999999
Q ss_pred EEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc--eEE
Q 002495 775 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHS 851 (915)
Q Consensus 775 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~--i~~ 851 (915)
+++.+.|..|++|+.++...+..+. ...+|++++++.+++++++.-.+ .|.+||+... +.+..+.+|... +..
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFIIR 444 (519)
T ss_pred EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEEE
Confidence 9999999999999999876665443 45789999999999999988888 9999999743 566666666543 333
Q ss_pred EEEe-CCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCC-CEEEEEecCCcEEEcC
Q 002495 852 CVFH-PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 915 (915)
Q Consensus 852 i~~s-pdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~IWd 915 (915)
-+|- .+..++++|+.|+.|+||+..+++++ .+.+|...|+|++|+|.. .++|+|++||+||||.
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 3443 35578999999999999999999988 899999999999999955 5799999999999994
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=269.24 Aligned_cols=281 Identities=22% Similarity=0.422 Sum_probs=239.5
Q ss_pred ceeeeEeecCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCC---CceeeEe-ccCCCcEEEEEECCCCCEEEEEeCCC
Q 002495 625 FKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT---LKSKTNL-EEHSSLITDVRFSPSMPRLATSSFDK 699 (915)
Q Consensus 625 ~~~~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~V~vwd~~t---~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg 699 (915)
+..+..+.+|.++|..++|+|- |..||+|+.|+.|+||+... ..++..+ .+|...|++++|+|.|++|+++|.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999998 89999999999999999884 4445444 37999999999999999999999999
Q ss_pred eEEEEECCC-CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC---eeEEEeecC---ceEEEEecCC
Q 002495 700 TVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---SCTRVFKGG---TAQMRFQPHL 772 (915)
Q Consensus 700 ~I~iWdl~~-~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~---~~~~~~~~~---~~~v~~sp~~ 772 (915)
++.||.-.. .-+++.++.||...|.|++|+++|. +||+|+.|..|-||.+..+ +|+.++..+ +..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 999997653 2367889999999999999999976 6779999999999999854 566677665 4668899999
Q ss_pred CEEEEEEcCCeEEEEECC---CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc
Q 002495 773 GRYLAAAAENVVSILDAE---TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 848 (915)
Q Consensus 773 ~~ll~~~~dg~I~i~D~~---t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 848 (915)
..|++++.|++|++|+.. ...++.++.+|...|.+++|++.|..|+++++| +|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999766 448999999999999999999999999999999 9999986532 11234677
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCc------EE--EEcccCCCeEEEEEeCC-CCEEEEEecCCcEEEcC
Q 002495 849 FHSCVFHPTYPSLLVIGCYQSLELWNMSENK------TM--TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 915 (915)
Q Consensus 849 i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~------~~--~~~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~IWd 915 (915)
++.+.|. ...|++++.|+.|+||...... ++ ....|+..|+++.|.|. ..+|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8889998 5579999999999999766431 11 34579999999999994 67999999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=300.02 Aligned_cols=290 Identities=23% Similarity=0.384 Sum_probs=254.4
Q ss_pred cCccceeeeEeecCCCCeEEEEEcCCCCEEEEEECC-CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCC
Q 002495 621 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 699 (915)
Q Consensus 621 ~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~D-g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 699 (915)
....|..+..+.-...+|..++|+..|.+||.|+.. |.+.||++.+...+....+|...|+|++++|||.+||+|++||
T Consensus 293 elP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg 372 (893)
T KOG0291|consen 293 ELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG 372 (893)
T ss_pred ecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC
Confidence 334667788888888999999999999999999865 8999999999888999999999999999999999999999999
Q ss_pred eEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC----ceEEEEecCCCEE
Q 002495 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRY 775 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~~~l 775 (915)
.|+|||..+ +.|+.+|..|+..|+.+.|+..+..++ +.+-||+|+.||+...++.++|..+ ..+++..|.+..+
T Consensus 373 KVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~ll-ssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 373 KVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLL-SSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELV 450 (893)
T ss_pred cEEEEeccC-ceEEEEeccCCCceEEEEEEecCCEEE-EeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEE
Confidence 999999998 899999999999999999999876554 8999999999999999999998754 3678888888888
Q ss_pred EEEEcCC-eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002495 776 LAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853 (915)
Q Consensus 776 l~~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 853 (915)
++|+.|. .|.+|++.+|+.+-.+.+|+++|.+++|+|++..|++++.| +||+||+-... ..+.++. ....+..++
T Consensus 451 ~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl~-i~sdvl~vs 527 (893)
T KOG0291|consen 451 CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETLE-IRSDVLAVS 527 (893)
T ss_pred EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeEe-eccceeEEE
Confidence 8888876 79999999999999999999999999999999999999999 99999986542 1222222 367789999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE-EE--------------------cccCCCeEEEEEeCCCCEEEEEecCCcEE
Q 002495 854 FHPTYPSLLVIGCYQSLELWNMSENKTM-TL--------------------TAHEGLIAALAVSTETGYVASASHDKFVK 912 (915)
Q Consensus 854 ~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~--------------------~~h~~~V~~l~~spdg~~Lasgs~Dg~I~ 912 (915)
|+|+|+.|++++-||.|.+||+..+..+ .+ ......++.|++++||.+|++|+..+.|+
T Consensus 528 frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iC 607 (893)
T KOG0291|consen 528 FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSIC 607 (893)
T ss_pred EcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEE
Confidence 9999999999999999999999876443 11 11335789999999999999999999999
Q ss_pred EcC
Q 002495 913 LWK 915 (915)
Q Consensus 913 IWd 915 (915)
||+
T Consensus 608 iY~ 610 (893)
T KOG0291|consen 608 IYD 610 (893)
T ss_pred EEE
Confidence 985
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=285.63 Aligned_cols=274 Identities=23% Similarity=0.379 Sum_probs=251.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEE
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 714 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~ 714 (915)
+..|++++|+.+|.+||+|++||.++||+. ++..+.++..|+++|.+|.|+.+|.||++++.|+++.+||..+ +....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQ 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEE
Confidence 467999999999999999999999999995 5778899999999999999999999999999999999999987 77777
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECCC
Q 002495 715 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET 791 (915)
Q Consensus 715 ~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t 791 (915)
.+.-|..+-.+|.|-.+. -|++++.|+.|+++.+.....+.++.+ .+.++.|.|.+..|++++.|++++||....
T Consensus 313 ~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 888888887889998653 467999999999999998888888765 567899999999999999999999999999
Q ss_pred ceEEEEecCCCCCeEEEEEcCCC---------CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEE
Q 002495 792 QACRLSLQGHTKPIDSVCWDPSG---------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 861 (915)
Q Consensus 792 ~~~~~~l~~h~~~V~si~~spdg---------~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l 861 (915)
..+...+.+|...|..+.|+|+| ..+++++.| +|++||+..+ .+++.+..|..+|++++|+|+++++
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEE
Confidence 99999999999999999999964 478888888 9999999877 8999999999999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 862 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 862 ~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
++|+.||.|.+|++.+++++......+.|..++|+.+|.+|+.+-.|+.|++-|
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 999999999999999999998888888899999999999999999999998754
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=306.05 Aligned_cols=273 Identities=24% Similarity=0.422 Sum_probs=239.7
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-------------------------------ceeeEeccC
Q 002495 628 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------------------------------KSKTNLEEH 676 (915)
Q Consensus 628 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~-------------------------------~~~~~l~~h 676 (915)
..++..-...|+|+.|++|+++||.|..|-.|++|.+... ...+++.+|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 3444445567999999999999999999999999987631 122346789
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE
Q 002495 677 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 756 (915)
Q Consensus 677 ~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~ 756 (915)
.++|..+.|+|+.++|++++.|++||+|.+++ ..++..+.||..+|+++.|+|. +++|||++.|++-++|........
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCch
Confidence 99999999999999999999999999999998 7788889999999999999998 567889999999999999999999
Q ss_pred EEeec---CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002495 757 RVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 832 (915)
Q Consensus 757 ~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s 832 (915)
+.|.+ .+.|+.|+|+..++++|+.|.+|++||+.++..++.|.+|.++|.+++|+|+|++|++|++| .|+|||+.+
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 88876 46789999999999999999999999999999999999999999999999999999999999 999999988
Q ss_pred CCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE------------------------E-EEcccC
Q 002495 833 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT------------------------M-TLTAHE 887 (915)
Q Consensus 833 ~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~------------------------~-~~~~h~ 887 (915)
+ ..+..+.+|.+.|.++.|+.+|..|++++.|..|++||+..-.. + .+....
T Consensus 609 ~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~ 685 (707)
T KOG0263|consen 609 G---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKN 685 (707)
T ss_pred C---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecC
Confidence 7 67778888999999999999999999999999999999864221 1 344455
Q ss_pred CCeEEEEEeCCCCEEEEE
Q 002495 888 GLIAALAVSTETGYVASA 905 (915)
Q Consensus 888 ~~V~~l~~spdg~~Lasg 905 (915)
.+|.+|.|...+-.|+.|
T Consensus 686 tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 686 TPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ceEEEEEEeccceeEEec
Confidence 688888888776555554
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=299.98 Aligned_cols=288 Identities=21% Similarity=0.314 Sum_probs=260.9
Q ss_pred cceeeeEeecCCCCeEEEEEc-CCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEE
Q 002495 624 SFKEANSVRASTSKVICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 702 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafs-pdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~ 702 (915)
+++..+.+-|-.+.|.+++|- |+..+||+++..+.+++|++.+..+. .+.+|++.|.+++...+|.+|++|+.|.+|+
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 667777888999999999974 57789999999999999998887766 8899999999999666778999999999999
Q ss_pred EEECCCC---CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE------------EEeecCceEEE
Q 002495 703 VWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------RVFKGGTAQMR 767 (915)
Q Consensus 703 iWdl~~~---~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~------------~~~~~~~~~v~ 767 (915)
+|.++++ ..++....+|...|.+++++..+..+|++++.|++|++|++...+.. +.+...+++++
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va 470 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA 470 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence 9988542 23456677999999999999888899999999999999999873211 11234678999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC
Q 002495 768 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 846 (915)
Q Consensus 768 ~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~ 846 (915)
+.|++..+++++.|.+.+||+++......++.+|...|.||.|++...++++++.| +|+||.+.+. .|++++.+|.
T Consensus 471 ia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~ 547 (775)
T KOG0319|consen 471 IAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHT 547 (775)
T ss_pred ecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCcc
Confidence 99999999999999999999999999999999999999999999999999999999 9999999776 8999999999
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 847 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 847 ~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
..|..+.|-.++..|++++.||.|+||+++++++. .+.+|.+.|++++.++...+++||+.||.|.+|+
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 99999999999999999999999999999999998 8999999999999999999999999999999996
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=272.81 Aligned_cols=291 Identities=19% Similarity=0.270 Sum_probs=253.2
Q ss_pred cccccccCccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEE
Q 002495 615 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 694 (915)
Q Consensus 615 ~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Las 694 (915)
..|+...+ .....+.+|.+.|+|+.|+.||.+||||+.+|.|+||+..++.....+......|.-++|+|.+..|+.
T Consensus 89 flW~~~~g---e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illA 165 (399)
T KOG0296|consen 89 FLWDISTG---EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLA 165 (399)
T ss_pred EEEEccCC---cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEe
Confidence 34444443 367889999999999999999999999999999999999999999888877788999999999999999
Q ss_pred EeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec----CceEEEEec
Q 002495 695 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQP 770 (915)
Q Consensus 695 gs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp 770 (915)
|+.||.|.+|.+.+ ....+.+.||..++++=+|.|+|++++ ++..||+|++||+.++..+..+.. ...++.+..
T Consensus 166 G~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~ 243 (399)
T KOG0296|consen 166 GSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL 243 (399)
T ss_pred ecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcCCcccccc
Confidence 99999999999998 477889999999999999999988766 999999999999999998887762 356777888
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEEEec--------CCCCCeEEEEEcC---CCCEEEEEeCC-eEEEEECCCCCCcce
Q 002495 771 HLGRYLAAAAENVVSILDAETQACRLSLQ--------GHTKPIDSVCWDP---SGELLASVSED-SVRVWTVGSGSEGEC 838 (915)
Q Consensus 771 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--------~h~~~V~si~~sp---dg~~Las~s~d-~I~iwdl~s~~~~~~ 838 (915)
.+..++.+..++.+++....+++.+.... .+...+.||.+.| .=.+.|+|+.| +|.|||+... .
T Consensus 244 ~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~ 319 (399)
T KOG0296|consen 244 AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----T 319 (399)
T ss_pred ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----h
Confidence 88889999999999999999998887776 3445555555554 55688999999 9999999764 2
Q ss_pred EEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 839 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 839 i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
++..-.|...|..+.|-+ ..+|++++.+|.|+.||.++|.++ .+.+|...|.+++++|+.++|+|+|.|++.+||+
T Consensus 320 ~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 320 LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 334445677899999999 889999999999999999999988 8999999999999999999999999999999985
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-31 Score=263.60 Aligned_cols=243 Identities=24% Similarity=0.442 Sum_probs=218.6
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------ceeeEeccCCCcEEEEEECCCCCEEEEEeCCCe
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 700 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~ 700 (915)
++..+.-....|..++|+|.|+++|+|+-|+...||++.+. +..+.+.+|.+.+.|+.|..| ..|+|++.|.+
T Consensus 89 K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~T 167 (343)
T KOG0286|consen 89 KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMT 167 (343)
T ss_pred ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCce
Confidence 44555556778999999999999999999999999999854 456779999999999999974 58999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEecCCCEEEE
Q 002495 701 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLA 777 (915)
Q Consensus 701 I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~ 777 (915)
+.+||+++ +..+..|.+|.+.|.+|++.|...+.|++|+-|+..++||++.+.++..|.++ +..++|.|++..|++
T Consensus 168 CalWDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 168 CALWDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred EEEEEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 99999998 88899999999999999999955567779999999999999999999999875 578999999999999
Q ss_pred EEcCCeEEEEECCCceEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002495 778 AAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 854 (915)
Q Consensus 778 ~~~dg~I~i~D~~t~~~~~~l~~--h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 854 (915)
++.|+++++||++....+..+.. ...+|++++|+..|++|++|..| ++.|||.-.+ +.+..+.+|++.|.++..
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGV 323 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEE
Confidence 99999999999999877776653 34579999999999999999988 9999999766 677888899999999999
Q ss_pred eCCCCEEEEEEcCCeEEEEE
Q 002495 855 HPTYPSLLVIGCYQSLELWN 874 (915)
Q Consensus 855 spdg~~l~s~s~dg~I~iwd 874 (915)
+|||..+++|+.|..|+||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999999999994
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=284.23 Aligned_cols=266 Identities=22% Similarity=0.455 Sum_probs=230.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCce
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 712 (915)
Q Consensus 633 ~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~ 712 (915)
.....|+|+.+.. ..+++|..|++|+|||..+..+++.+.+|++.|.|+.|. .+.|++|+.|.+|+|||+.+ +++
T Consensus 195 e~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t-ge~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT-GEP 269 (499)
T ss_pred ccCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC-Cch
Confidence 3567899999964 489999999999999999999999999999999999985 56999999999999999998 899
Q ss_pred EEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eEEEeecCceEEE-EecCCCEEEEEEcCCeEEEEE
Q 002495 713 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGTAQMR-FQPHLGRYLAAAAENVVSILD 788 (915)
Q Consensus 713 ~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~---~~~~~~~~~~~v~-~sp~~~~ll~~~~dg~I~i~D 788 (915)
+.++.+|...|..+.|+. .++++|+.|.+|.+||+.... +.+++.++...+. +.-+++++++++.|.+|++|+
T Consensus 270 l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWS 346 (499)
T ss_pred hhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEe
Confidence 999999999999999983 377799999999999998754 3334444433332 222445888999999999999
Q ss_pred CCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC
Q 002495 789 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 867 (915)
Q Consensus 789 ~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~d 867 (915)
+.+.+++.++.+|...|-|+.+. ++++++|+.| +|++||+..| .|+..+.+|+.-|.++.| +.+.|++|+.|
T Consensus 347 ~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred ccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheee--cCceeeecccc
Confidence 99999999999999999988865 8999999999 9999999887 899999999999999999 45679999999
Q ss_pred CeEEEEECCCCc---------EE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 868 QSLELWNMSENK---------TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 868 g~I~iwd~~~~~---------~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
|+|+|||+..+. ++ .+..|.+.|..+.|. ...|+++++|.+|.|||
T Consensus 420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999997653 12 567899999999994 45799999999999997
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=321.72 Aligned_cols=282 Identities=18% Similarity=0.305 Sum_probs=238.4
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----c----eeeEeccCCCcEEEEEECC-CCCEEEEEeCCCeE
Q 002495 631 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----K----SKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTV 701 (915)
Q Consensus 631 l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~----~----~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I 701 (915)
+..|.+.|++++|+++|++||+|+.|++|+|||+... . ....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 122233 346799999987 47899999999999
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec--CceEEEEe-cCCCEEEEE
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQ-PHLGRYLAA 778 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~s-p~~~~ll~~ 778 (915)
+|||+.+ +..+..+.+|...|++++|+|....+|++|+.|++|++||++++.++..+.. .+.++.|. +++..++++
T Consensus 558 ~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 9999987 6778889999999999999985566778999999999999999988877754 45667775 457788899
Q ss_pred EcCCeEEEEECCCce-EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC---CcceEEEeccCCCceEEEE
Q 002495 779 AAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---EGECVHELSCNGNKFHSCV 853 (915)
Q Consensus 779 ~~dg~I~i~D~~t~~-~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~---~~~~i~~~~~~~~~i~~i~ 853 (915)
+.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.| .|+|||++... ...++..+.+|...+..+.
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999999875 567788999999999997 67889999988 99999997542 2356788889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE--------------EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 854 FHPTYPSLLVIGCYQSLELWNMSENKTM--------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 854 ~spdg~~l~s~s~dg~I~iwd~~~~~~~--------------~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
|++++.+|++|+.|+.|++|+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1133556799999999999999999999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=301.75 Aligned_cols=262 Identities=27% Similarity=0.456 Sum_probs=219.6
Q ss_pred eEEEEcCCCceec---CCCCeeEeCCCchhhhhhhhhcccCCCCCceeeecccCCCCCCCCCCcccccccCccceeeeEe
Q 002495 555 LMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 631 (915)
Q Consensus 555 ~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l 631 (915)
+.-|++|+..++. +..+++|.+...+++..- -..++..-++...|......|... -....++
T Consensus 383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk------------~~~~l~~~d~~sad~~~~~~D~~~---~~~~~~L 447 (707)
T KOG0263|consen 383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLK------------DASDLSNIDTESADVDVDMLDDDS---SGTSRTL 447 (707)
T ss_pred eEeecCCcchhhccccccEEEEEecchhhhcccc------------chhhhccccccccchhhhhccccC---CceeEEe
Confidence 4566777775444 556689998854332110 011122222222222222223222 2345569
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc
Q 002495 632 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 711 (915)
Q Consensus 632 ~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~ 711 (915)
.+|.++|+.+.|+|+.++|++++.|++||+|.+.+..++..+++|..+|+++.|+|.|-|+||++.|++.++|..+. ..
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~ 526 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NK 526 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred eEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEE
Q 002495 712 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILD 788 (915)
Q Consensus 712 ~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D 788 (915)
+++.+.+|-+.|.|+.|+|+.. ++++|+.|.+||+||+.+|..++.|.++ +.+++|+|+|.++++++.|+.|.|||
T Consensus 527 PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred chhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 9999999999999999999965 6669999999999999999999999775 57889999999999999999999999
Q ss_pred CCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002495 789 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 833 (915)
Q Consensus 789 ~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 833 (915)
+.+++.+..+.+|.+.|.++.|+.+|.+||+++.| +|++||+...
T Consensus 606 l~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999999999999999999999999 9999998654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=296.04 Aligned_cols=349 Identities=21% Similarity=0.347 Sum_probs=265.4
Q ss_pred EEEEcCCCceec--CCCCeeEeCCCchhhhhhhhhcccCCCCCceeee-cccCCC----CCCCCCCcccccccCccceee
Q 002495 556 MMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDT----DPRDAGGRGMDVSQGFSFKEA 628 (915)
Q Consensus 556 ~~fs~dg~~~~~--~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~~~~----~~~~~~~~~~d~~~~~~~~~~ 628 (915)
+.|+++|..+++ .+.+.+-|+.++... +. ....+ .++.+..+ +.+|+. ..+....+.|.+..+ +.+
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~--l~-s~~~e-d~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tg---k~i 97 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIA--LP-SGSNE-DEDEITALALTPDEEVLVTASRSQLLRVWSLPTG---KLI 97 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCcee--cc-cCCcc-chhhhheeeecCCccEEEEeeccceEEEEEcccc---hHh
Confidence 788999998777 344566788877652 11 11111 11222222 333321 122333455655544 777
Q ss_pred eEeec-CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCC--EEEEEeCCCeEEEEE
Q 002495 629 NSVRA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWD 705 (915)
Q Consensus 629 ~~l~~-H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~I~iWd 705 (915)
+.++. |+.+|.-++|+|.|.+|++|+.|+.|+|||+..+.+.+.|++|.+.|.++.|+|+-. .|++|..|++|++||
T Consensus 98 rswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn 177 (775)
T KOG0319|consen 98 RSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWN 177 (775)
T ss_pred HhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence 88887 999999999999999999999999999999999999999999999999999999654 589999999999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--------------------------
Q 002495 706 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------------------------- 759 (915)
Q Consensus 706 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~-------------------------- 759 (915)
+.+...++.++..|.+.|++++|.+++..++ +++.|..|.+||+...++.++.
T Consensus 178 l~~~~tcl~~~~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 178 LNDKRTCLHTMILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred cccCchHHHHHHhhhhheeeeeeccCCceEE-EeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEe
Confidence 9975667888999999999999999977666 8888999999997533211100
Q ss_pred ---------e-----------cC----------------------------------------------ceEE-------
Q 002495 760 ---------K-----------GG----------------------------------------------TAQM------- 766 (915)
Q Consensus 760 ---------~-----------~~----------------------------------------------~~~v------- 766 (915)
. .. +..+
T Consensus 257 G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 257 GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc
Confidence 0 00 0000
Q ss_pred ---------------------------------EEe--cCCCEEEEEEcCCeEEEEECCCce------------------
Q 002495 767 ---------------------------------RFQ--PHLGRYLAAAAENVVSILDAETQA------------------ 793 (915)
Q Consensus 767 ---------------------------------~~s--p~~~~ll~~~~dg~I~i~D~~t~~------------------ 793 (915)
... ..+..+++++.|.++++|.++++.
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 001 112255555666677777442110
Q ss_pred ----------------------------------EEE----EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002495 794 ----------------------------------CRL----SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 834 (915)
Q Consensus 794 ----------------------------------~~~----~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~ 834 (915)
.+. +...|+..|+|++++|+.++|++|+.| +.+||++..
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-- 494 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-- 494 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC--
Confidence 000 123578889999999999999999999 999999974
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002495 835 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 913 (915)
Q Consensus 835 ~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~I 913 (915)
......+.+|...+.++.|++....+++++.|.+|+||.+.+..++ ++.+|...|..+.|-.+++.|+||+.||.|+|
T Consensus 495 -~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 495 -LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred -ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 4788999999999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred cC
Q 002495 914 WK 915 (915)
Q Consensus 914 Wd 915 (915)
|+
T Consensus 574 Wn 575 (775)
T KOG0319|consen 574 WN 575 (775)
T ss_pred Ee
Confidence 96
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-30 Score=284.91 Aligned_cols=279 Identities=20% Similarity=0.314 Sum_probs=252.8
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCC
Q 002495 632 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPG 710 (915)
Q Consensus 632 ~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~iWdl~~~~ 710 (915)
......|+|.+|++..+.||+|-..|.+.+|.+....+++.+.-....|..+.|+..|.+||.||. -|.+.||++.+ .
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-E 340 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-E 340 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec-c
Confidence 344488999999999999999999999999999999999999988899999999999999999987 48999999998 4
Q ss_pred ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEecCCCEEEEEEcCCeEEEE
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSIL 787 (915)
Q Consensus 711 ~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~ 787 (915)
..+....+|...|++++++|||. +|++|++||.|+|||..++-|+.+|..+ ++.+.|...+..+++++-||+|+.|
T Consensus 341 sYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred ceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 55667789999999999999976 6679999999999999999999999764 5678899999999999999999999
Q ss_pred ECCCceEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002495 788 DAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 864 (915)
Q Consensus 788 D~~t~~~~~~l~~h-~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~ 864 (915)
|+...+..+++... .....|++.+|.|.++++|+.| .|.||++.+| ..+..+.+|+++|.+++|+|.+..|+++
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGSLLASG 496 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccCeEEec
Confidence 99999999998863 3357889999999999999999 8999999988 7888999999999999999999999999
Q ss_pred EcCCeEEEEECCCC-cEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 865 GCYQSLELWNMSEN-KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 865 s~dg~I~iwd~~~~-~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+.|++|++||+-.. ..+.-..+...|.+++|.|+|+.||++.-||.|.|||
T Consensus 497 SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred cccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 99999999998665 3445566788899999999999999999999999997
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-31 Score=256.80 Aligned_cols=279 Identities=19% Similarity=0.331 Sum_probs=239.2
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWd 705 (915)
+....+..|.++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eEEEee---cCceEEEEecCCCEEEEEEc
Q 002495 706 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK---GGTAQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 706 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~--~~~~~~---~~~~~v~~sp~~~~ll~~~~ 780 (915)
+.+ ++.++.|.+|.+.|+.+.|+.+. .++++|+.|.+|++||.++.. .+.++. ..+.++ .-.+..|++++.
T Consensus 88 V~T-Gkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si--~v~~heIvaGS~ 163 (307)
T KOG0316|consen 88 VNT-GKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI--DVAEHEIVAGSV 163 (307)
T ss_pred ccc-CeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE--EecccEEEeecc
Confidence 998 88999999999999999999874 577799999999999998754 444443 334433 445578999999
Q ss_pred CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCce--EEEEEeCC
Q 002495 781 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF--HSCVFHPT 857 (915)
Q Consensus 781 dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i--~~i~~spd 857 (915)
||+++.||++.+.......+ .+|+|++|++|++.+++++.| +|++.|-.++ +.+..+++|.+.- ..|++...
T Consensus 164 DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred CCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeeccc
Confidence 99999999999987765554 679999999999999999999 9999999888 5666677776543 45567777
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EEcccCCC-eEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 858 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 858 g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~-V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
...+++|++||.|++||+.+...+ .+..+... |.+++++|....|+++.. +.+.+|
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 889999999999999999999888 56666666 899999998887777754 345555
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=288.46 Aligned_cols=282 Identities=21% Similarity=0.385 Sum_probs=258.0
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl 706 (915)
..+.+..|++.|.||.|+|...+++++-++|.|.||+.++...++.+.....+|++..|-.-.+++++|++|..||||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34456669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeEEEeecCc---eEEEEecCC-CEEEEEEcC
Q 002495 707 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGGT---AQMRFQPHL-GRYLAAAAE 781 (915)
Q Consensus 707 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~-~~~~~~~~~~---~~v~~sp~~-~~ll~~~~d 781 (915)
.+ .+.+..|..|.+.|.||+.||...++| ++++|-+|++||.+.. .|..+|+++. .+++|.|.+ +.+++++-|
T Consensus 85 nt-~ekV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 85 NT-GEKVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred cc-ceeeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 98 788999999999999999999977665 9999999999999876 6778888864 678899977 577888889
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 858 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg--~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg 858 (915)
++|+||.+....+.+++.+|...|+||+|-+.| .+|++|++| .|+|||..+. .|+.++.+|...|..+.|||.-
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCC
Confidence 999999999999999999999999999999855 499999999 9999999776 8999999999999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002495 859 PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 913 (915)
Q Consensus 859 ~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~I 913 (915)
..|++|+.||+|+||+..+-+.. ++.-....|+||+-.+.++.|+.|.+.|.|.|
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999887766 66667789999999999999999999888754
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=269.65 Aligned_cols=242 Identities=27% Similarity=0.524 Sum_probs=222.3
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-CceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 707 (915)
Q Consensus 629 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~ 707 (915)
..+++|++.|.+|+|+..|++||+++.|-.+++||.++ .++++.+.+|+..|.+++|-|.|.+|++++.|.+|+.|+++
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~ 223 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD 223 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence 45789999999999999999999999999999999986 77888999999999999999999999999999999999999
Q ss_pred CCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---ecCceEEEEecCC------------
Q 002495 708 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHL------------ 772 (915)
Q Consensus 708 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~------------ 772 (915)
+ +.++.++.+|...|..++.+.|| .++++|+.|.+|++|-+.++.|...+ +..+.+++|.|..
T Consensus 224 t-g~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 224 T-GYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred c-ceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence 8 89999999999999999999885 58889999999999999999665444 4456777776542
Q ss_pred ---CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc
Q 002495 773 ---GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 848 (915)
Q Consensus 773 ---~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 848 (915)
..+++++.|++|++||+.++.|+.++.+|..+|..++|+|.|+||+++.+| +++|||+++. .|.+.+..|..-
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hf 378 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHF 378 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcce
Confidence 367778889999999999999999999999999999999999999999999 9999999876 899999999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002495 849 FHSCVFHPTYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 849 i~~i~~spdg~~l~s~s~dg~I~iwd~ 875 (915)
++++.|+.+..++++|+-|-.+++|..
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999975
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=288.12 Aligned_cols=279 Identities=23% Similarity=0.401 Sum_probs=254.6
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 629 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~ 708 (915)
..+.+|...|++++||.|...+++|+ .+.|+||+.++.++++++... .+.|.+|.|.++++++|...|.+.|||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 34679999999999999998888775 679999999999999999754 899999999999999999999999999998
Q ss_pred CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC--------e-------eEEEeecCceEEEEecCCC
Q 002495 709 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--------S-------CTRVFKGGTAQMRFQPHLG 773 (915)
Q Consensus 709 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~--------~-------~~~~~~~~~~~v~~sp~~~ 773 (915)
...+.++..|.+.|++|+..||+..++ +++.|.+|++||..-- + .+-.+...+.++.++|++.
T Consensus 444 -~~l~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 -ASLVETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred -hhhhhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 677888889999999999999988766 9999999999997521 1 1122346788999999999
Q ss_pred EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEE
Q 002495 774 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 852 (915)
Q Consensus 774 ~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i 852 (915)
+++++--|++|+||-+.+.+....+.||.-+|.|+.++||++++++|+.| .|+||-+.-| .|-+.+..|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 99999999999999999999999999999999999999999999999999 9999999766 7888999999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 853 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 853 ~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.|.|....++++|.|+.|+-||-...+.+ .+.+|...|+|++.+|+|.+++++++|.+||+|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999999988877 8999999999999999999999999999999994
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-32 Score=282.90 Aligned_cols=271 Identities=24% Similarity=0.412 Sum_probs=230.7
Q ss_pred eecccCCCCCCCCCCcccccccCccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEecc-CCC
Q 002495 600 SFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSS 678 (915)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~-h~~ 678 (915)
.|..++...........+.++++..|.....+.+|.+.|+++.|+++|.++++|+.+|.|++|+..-. .++.+.. |..
T Consensus 103 ~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~e 181 (464)
T KOG0284|consen 103 RWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAE 181 (464)
T ss_pred EEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhh
Confidence 34443334444445566778888888888899999999999999999999999999999999997643 3444554 559
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE
Q 002495 679 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 758 (915)
Q Consensus 679 ~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~ 758 (915)
.|++++|+|++..|++|++||+|+|||... .+..+.+.+|.-.|.+++|+|.. .+|++++.|..|++||.+++.|+.+
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~-~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~t 259 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-PKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLAT 259 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccC-CchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhh
Confidence 999999999999999999999999999987 55667779999999999999984 4778999999999999999999987
Q ss_pred eec---CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCC
Q 002495 759 FKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSG 833 (915)
Q Consensus 759 ~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd-g~~Las~s~d-~I~iwdl~s~ 833 (915)
+.+ .+..+.|.+++++|++++.|..+++||+++.+.+.++++|+..|+++.|+|- ..+|++|+.| .|..|.+...
T Consensus 260 lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~ 339 (464)
T KOG0284|consen 260 LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE 339 (464)
T ss_pred hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc
Confidence 655 4566889999999999999999999999999999999999999999999994 4588888888 9999998633
Q ss_pred CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002495 834 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 834 ~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~ 875 (915)
+ .....-..|...|++++|+|-|..|++|+.|.++++|.-
T Consensus 340 ~--p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 340 E--PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred c--cccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 2 222233467899999999999999999999999999964
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=269.79 Aligned_cols=277 Identities=25% Similarity=0.432 Sum_probs=244.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEec--------cCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------EHSSLITDVRFSPSMPRLATSSFDKTVRVW 704 (915)
Q Consensus 633 ~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~--------~h~~~V~~l~fspdg~~Lasgs~Dg~I~iW 704 (915)
+..+.+.|..|||||.+|++|+.||.|.|||..+++..+.++ -+..+|.|++|+.|...|++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 345568899999999999999999999999999998877654 478999999999999999999999999999
Q ss_pred ECCCCCceEEEec-cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCc---eEEEEecCCCEEEEEEc
Q 002495 705 DADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 705 dl~~~~~~~~~~~-~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~ 780 (915)
.+.+ +.+++.|. .|+..|+|+.|+.|+..++ +++.|-+|++.-+++|++++.|+++. ....|.+++.++++++.
T Consensus 291 ri~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIET-GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEec-chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 9998 77887776 8999999999999988776 99999999999999999999999875 55789999999999999
Q ss_pred CCeEEEEECCCceEEEEecC--CCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEe---ccCCCceEEEE
Q 002495 781 ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHEL---SCNGNKFHSCV 853 (915)
Q Consensus 781 dg~I~i~D~~t~~~~~~l~~--h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~---~~~~~~i~~i~ 853 (915)
||+|++|+.++.+|+.+++. .+-+|+++...|... .+++|... +|+|.++.. ..++.+ +..++.+.+++
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEE
Confidence 99999999999999998875 455788888888544 66666666 999998852 334433 33466788999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 854 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 854 ~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.+|.|.++++.+.|+.++.|.+.+|++. ++..|+..|..++-+|..+.||+-++||.+++|+
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999887 7889999999999999999999999999999996
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=280.89 Aligned_cols=342 Identities=20% Similarity=0.318 Sum_probs=258.3
Q ss_pred CCCceecCC--CCeeEeCCCchhhhhhhhhcccCCCCCceeeecccCCCC-----CCCCCCcccccccCccceeeeEeec
Q 002495 561 DGAGTLTSP--SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTD-----PRDAGGRGMDVSQGFSFKEANSVRA 633 (915)
Q Consensus 561 dg~~~~~~~--~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~l~~ 633 (915)
.|.+.+.+. .+-+||+++|++...+..... ...+.+.+..++.. ..|+..+.|+.... ....++.+
T Consensus 33 ~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~----k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~---~~~~tfng 105 (888)
T KOG0306|consen 33 KGRAVAVSALEQVNIWDLRTGEIEKKLILLKK----KAEVTCLRSSDDILLLAVGYADGSVQIFSLESE---EILITFNG 105 (888)
T ss_pred CCcEEEEeccccEeEEeeecchhhhhhhhhcc----cceEEEeeccCCcceEEEEecCceEEeeccCCC---ceeeeecc
Confidence 366666533 346799999987665543111 12344555555544 34556666666644 67788999
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceE
Q 002495 634 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 713 (915)
Q Consensus 634 H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~ 713 (915)
|...|+++.|+..|.+||+|+.|+.|.|||+-...-...+++|.+.|+..-|..+.++|+++|.|+.|++||+++ ..++
T Consensus 106 HK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~t-qhCf 184 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLET-QHCF 184 (888)
T ss_pred cccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccc-ceee
Confidence 999999999999999999999999999999998888999999999999999999889999999999999999998 7788
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC----------------C-------------------e---e
Q 002495 714 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN----------------G-------------------S---C 755 (915)
Q Consensus 714 ~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~----------------~-------------------~---~ 755 (915)
.+...|.+.|+.+++.+ .++++++.|+.+++|++.. | + |
T Consensus 185 ~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c 261 (888)
T KOG0306|consen 185 ETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVC 261 (888)
T ss_pred eEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEE
Confidence 88888999999999886 3556788888899998710 0 0 0
Q ss_pred -------------------------------------------------------------EEEe---------------
Q 002495 756 -------------------------------------------------------------TRVF--------------- 759 (915)
Q Consensus 756 -------------------------------------------------------------~~~~--------------- 759 (915)
+..+
T Consensus 262 ~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l 341 (888)
T KOG0306|consen 262 QGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL 341 (888)
T ss_pred ecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe
Confidence 0000
Q ss_pred ----------e------------------c---CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEE------------
Q 002495 760 ----------K------------------G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL------------ 796 (915)
Q Consensus 760 ----------~------------------~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~------------ 796 (915)
. + .+..++++. ++.+++.+..+.|.||+..+.+|++
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~-d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~F 420 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS-DSILLASGAGESIKIWNRDTLKCIRTITCGYILASKF 420 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec-CceeeeecCCCcEEEEEccCcceeEEeccccEEEEEe
Confidence 0 0 000111111 1233333445566666666555444
Q ss_pred ----------------------------EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-----CcceEEE-
Q 002495 797 ----------------------------SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-----EGECVHE- 841 (915)
Q Consensus 797 ----------------------------~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~-----~~~~i~~- 841 (915)
++.+|++.|.+++.+||++.+++++.| +|++||+.--. ..+.+..
T Consensus 421 vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 421 VPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred cCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence 456788999999999999999999999 99999974321 1111110
Q ss_pred ---eccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 842 ---LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 842 ---~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
.-.-...|.++.++||+++|+++--|.+|+||-+++-+.. .+.+|.-+|.|+.++||+++|+|||.|..|+||
T Consensus 501 ~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 501 HTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred cceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 0112567999999999999999999999999999998877 899999999999999999999999999999999
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=258.85 Aligned_cols=278 Identities=22% Similarity=0.321 Sum_probs=246.4
Q ss_pred EeecCCCCeEEEEEcC---CCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 002495 630 SVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 630 ~l~~H~~~V~~lafsp---dg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl 706 (915)
+..+|+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+-+|.+|.+.|+..+++.+..+-++++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4579999999999986 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEeecCceEEEEecCCCEEEEEEcCC
Q 002495 707 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQPHLGRYLAAAAEN 782 (915)
Q Consensus 707 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~sp~~~~ll~~~~dg 782 (915)
-+ +..+..|. |..-|..++|+.|.++++ +|+.+..+||||++..+. +.-..+++..+.|...+..|++++.|+
T Consensus 89 ~t-gdelhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 89 VT-GDELHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hh-hhhhhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 98 66666665 888999999999977666 999999999999987642 233445677888999999999999999
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEE
Q 002495 783 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 862 (915)
Q Consensus 783 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~ 862 (915)
+|++||.++++.+.++. ...+|+++.++++|++|.++....|++||..+. ..++.++. ...|.+...+|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k~-P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYKM-PCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeeccC-ccccccccccCCCceEE
Confidence 99999999999998887 567899999999999998888779999999765 44444433 55688899999999999
Q ss_pred EEEcCCeEEEEECCCCcEE-E-EcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 863 VIGCYQSLELWNMSENKTM-T-LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 863 s~s~dg~I~iwd~~~~~~~-~-~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+|+.|..++.||..+++.+ . ..+|.++|.|+.|+|+|...++|+.||+||||.
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999988 3 379999999999999999999999999999993
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=267.72 Aligned_cols=282 Identities=21% Similarity=0.392 Sum_probs=245.5
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC--CceeeEeccCCCcEEEEEECCCCCEEEEEeCC----C
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD----K 699 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g 699 (915)
.....+.+|...|+-..|+|.|-|+|+|...|+|||||... .-++.++..-.++|.+|.|+.|+++|++.++. |
T Consensus 50 ~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred cceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 34667889999999999999999999999999999999864 33456677888999999999999999888763 3
Q ss_pred eEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEE
Q 002495 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 776 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll 776 (915)
.+.+||. +..+-.+.||...|++++|-|.....+++|++|++|.+|+-.-.+...++.. -+.+++|+|++.+++
T Consensus 130 ~~F~~DS---G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa 206 (603)
T KOG0318|consen 130 HVFLWDS---GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA 206 (603)
T ss_pred EEEEecC---CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence 4566665 4567889999999999999999999999999999999998766666555544 468899999999999
Q ss_pred EEEcCCeEEEEECCCceEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC---Cce
Q 002495 777 AAAAENVVSILDAETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---NKF 849 (915)
Q Consensus 777 ~~~~dg~I~i~D~~t~~~~~~l~---~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~---~~i 849 (915)
+++.||.|+|||-.+++.+..+. +|.+.|.+++|+||+..|++++.| +++|||+.+. .++.++.... ...
T Consensus 207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~---slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN---SLVSTWPMGSTVEDQQ 283 (603)
T ss_pred EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc---ceEEEeecCCchhceE
Confidence 99999999999999999999998 799999999999999999999999 9999999877 5666665433 345
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 850 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 850 ~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
..|.|- ...|++.+.+|.|.+++....... .+.+|...|+++..++++++|++|+.||.|.-|+
T Consensus 284 vG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 284 VGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred EEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 566776 567999999999999999998866 7889999999999999999999999999999996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=254.55 Aligned_cols=279 Identities=16% Similarity=0.257 Sum_probs=237.1
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 709 (915)
Q Consensus 630 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~ 709 (915)
.+.+|..+++-|.|+.+|.+|++++.|.++.||-..+++.+-++.+|.+.|+||+.+.+.++|++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t- 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET- 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC-
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEeccCCCCeEEEEEcCCCCeEEEEEe----CCCcEEEEEcCC-------CeeEEEee---cCceEEEEecCCCEE
Q 002495 710 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSINN-------GSCTRVFK---GGTAQMRFQPHLGRY 775 (915)
Q Consensus 710 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s----~Dg~I~iwdl~~-------~~~~~~~~---~~~~~v~~sp~~~~l 775 (915)
++.+..++ ....|..+.|+.+++.++++.. ..+.|.++|++. .++...+. ..+..+.|.|.+..|
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 77777776 5678999999999887665542 357899999984 33344433 356678899999999
Q ss_pred EEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002495 776 LAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853 (915)
Q Consensus 776 l~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 853 (915)
++|..+|.|.+||++++ +.+.....|...|+.+++++|..++++++.| +-++||+++. .+++.+.. ..++.+.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence 99999999999999998 5566667899999999999999999999999 9999999876 56666655 78899999
Q ss_pred EeCCCCEEEEEEcCCeEEE--EECCCC------------cEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 854 FHPTYPSLLVIGCYQSLEL--WNMSEN------------KTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 854 ~spdg~~l~s~s~dg~I~i--wd~~~~------------~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
++|....++.|+.-...-| -+.+.+ +.+ .+.+|-++|++|+|+|+|+..++|++||.|||.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999988888876543222 222222 223 778999999999999999999999999999984
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=249.50 Aligned_cols=280 Identities=19% Similarity=0.275 Sum_probs=247.0
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeE--eccCCCcEEEEEECC-CCCEEEEEeCCCeEEEEE
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 629 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~--l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~iWd 705 (915)
+.+++|...|.+|+|+.+|..|++|+.|+++.||+++..+.... .++|.+.|-.++|+| ....|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56789999999999999999999999999999999987655443 568999999999998 566899999999999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--ecCceEEEEecCCCEEEEEEcCCe
Q 002495 706 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 783 (915)
Q Consensus 706 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~ 783 (915)
++. ++++.......+.|. +.|+|++++++ +++.|..|.+.|.++.+.+..+ +..+..++|+-++..++.....|.
T Consensus 94 ~r~-~k~~~~i~~~~eni~-i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRS-GKCTARIETKGENIN-ITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred ecc-CcEEEEeeccCcceE-EEEcCCCCEEE-EecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998 666666655545554 88999987655 8899999999999998877654 456677889988788888888899
Q ss_pred EEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEE
Q 002495 784 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 862 (915)
Q Consensus 784 I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~ 862 (915)
|.|......+++..+.+|.....||.|+|+|++|++|+.| .+.+||+. +..|++.+..+.-+|..+.|+-+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~---ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD---ELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh---HhhhheeeccccCceEEEEeccCcceee
Confidence 9999999999999999999999999999999999999999 99999995 4488888888899999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC---------CcEEEc
Q 002495 863 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD---------KFVKLW 914 (915)
Q Consensus 863 s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D---------g~I~IW 914 (915)
+++.|..|-|=++.+|..+.-..+.++...|+|+|...+||-+++| |.|+||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999989999999999999999999988865 566665
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=259.86 Aligned_cols=286 Identities=19% Similarity=0.277 Sum_probs=244.6
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl 706 (915)
.+.+|..|++.|++|+.+|+.+++|||+.|..-.||++.++.....+.+|++.|+++.|+.+|.+||||..+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCc---eEEEEecCCCEEEEEEcCCe
Q 002495 707 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENV 783 (915)
Q Consensus 707 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~dg~ 783 (915)
.+ +.....+......|.-+.|||.+ .+|++|+.||.|.+|.+.+....+.+.++. ++-.|.|+|++++++..||+
T Consensus 136 st-g~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 ST-GGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cc-CceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98 55555565566778889999975 566699999999999999988888887754 55679999999999999999
Q ss_pred EEEEECCCceEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE-----eccCCC---ceEEEE
Q 002495 784 VSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE-----LSCNGN---KFHSCV 853 (915)
Q Consensus 784 I~i~D~~t~~~~~~l~~h-~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~-----~~~~~~---~i~~i~ 853 (915)
|++||.+++.+++.+... .....++.++..+..++.|+.+ .+++-...+++...+... ...+.. .|..+.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 999999999999888743 3457788899899999999888 788887776643222220 112222 344555
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 854 FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 854 ~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
++..-+..++|+-||+|.|||+...+......|...|..+.|-+ ..+|++++.||.|++||
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 66677889999999999999999999999999999999999998 78999999999999997
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=283.41 Aligned_cols=280 Identities=22% Similarity=0.386 Sum_probs=250.2
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 002495 631 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 710 (915)
Q Consensus 631 l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~ 710 (915)
++..+..|..++|+|...+++++-..|.|.+||..-+.++..|..|.++|..|+|+|...++++|++|-.|+||+.++ .
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-r 83 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-R 83 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-c
Confidence 455577899999999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCc---eEEEEecCCCEEEEEEcCCeEEEE
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSIL 787 (915)
Q Consensus 711 ~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~dg~I~i~ 787 (915)
+++.++.||-+.|..+.||+.-..+| ++++|-+|+||++.+.+|+.++.++. .|..|+|....+++++-|-+|+||
T Consensus 84 rclftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred eehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 89999999999999999999877655 99999999999999999999998864 667799999999999999999999
Q ss_pred ECCCc-----------------------------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc
Q 002495 788 DAETQ-----------------------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 837 (915)
Q Consensus 788 D~~t~-----------------------------~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~ 837 (915)
|+... -..+.+.+|+..|+-++|+|.-.+|++|++| .|++|.+...+ ..
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aW 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AW 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-ce
Confidence 97521 1234678999999999999999999999999 99999996542 34
Q ss_pred eEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 838 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 838 ~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
.+.+..+|.+.|.++.|||.-..|++.+.|++|+|||+...+.+ ++....+..+.++.+|..+++++| +|+-+.||
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEE
Confidence 56778899999999999999999999999999999999999888 677777899999999999888766 55555555
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=261.98 Aligned_cols=243 Identities=22% Similarity=0.441 Sum_probs=223.3
Q ss_pred CCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 002495 666 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 745 (915)
Q Consensus 666 t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I 745 (915)
..+..+.+.+|.+.|.||++.|.+.+|++|+.|++|+|||+.+ +....++.||...|..+++++...++| +|+.|+.|
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlF-s~gedk~V 217 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQV 217 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEE-EecCCCee
Confidence 3456677889999999999999999999999999999999998 888899999999999999999877666 99999999
Q ss_pred EEEEcCCCeeEEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002495 746 RYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 822 (915)
Q Consensus 746 ~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~ 822 (915)
+.||++..+.++.+.++ +.++..+|....+++++.|.+++|||+++...+..+.+|..+|.++.+.|...-+++|+.
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99999999999998875 567888999999999999999999999999999999999999999999998889999999
Q ss_pred C-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC
Q 002495 823 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG 900 (915)
Q Consensus 823 d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~ 900 (915)
| +|++||++.+ +....+..|...+.+++.+|....|++++.| .|+-|++..+..+ .+.+|...|++++...|+
T Consensus 298 D~tvrlWDl~ag---kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 298 DSTVRLWDLRAG---KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CceEEEeeeccC---ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-
Confidence 9 9999999887 6778888899999999999999877777665 6999999999887 788999999999998887
Q ss_pred EEEEEecCCcEEEcC
Q 002495 901 YVASASHDKFVKLWK 915 (915)
Q Consensus 901 ~Lasgs~Dg~I~IWd 915 (915)
++++|++.|.|.+||
T Consensus 373 v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWD 387 (460)
T ss_pred eEEEcCCceEEEEEe
Confidence 888999999999997
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=270.05 Aligned_cols=286 Identities=21% Similarity=0.298 Sum_probs=245.9
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--eeeEeccCCCcEEEEEECCCCCEEEEEeCCCeE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 701 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 701 (915)
.-.....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.++++.+++++.|+.+
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 344566788999999999999998999999999999999987555 778888999999999999999999999999999
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcC
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE 781 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~d 781 (915)
++|+++. .....++.+|.+.|+++.|...... +++++.|.+|++||+....|.+++-....+..+......++++..|
T Consensus 244 r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~D 321 (459)
T KOG0288|consen 244 RLWNVDS-LRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFD 321 (459)
T ss_pred eeeeccc-hhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccc
Confidence 9999997 7888999999999999999876554 6699999999999999999998876555554444445667778889
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC----CCceEEEEEeC
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN----GNKFHSCVFHP 856 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~----~~~i~~i~~sp 856 (915)
+.|++||+++..+......+. .|+++..+.++..|.+++.| ++.++|+++... ...+... ....+.++|+|
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI---~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI---RQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred cceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE---EEEeeccccccccccceeEECC
Confidence 999999999999999988765 89999999999988888888 999999988633 3332221 33478899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcc-cCC-CeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 857 TYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEG-LIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 857 dg~~l~s~s~dg~I~iwd~~~~~~~-~~~~-h~~-~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
++.|+++|+.||.|+||++.++++. .+.. +.. .|++++|++.|.+|++++.++.+.+|.
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999999987 3333 333 699999999999999999999999995
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-29 Score=287.17 Aligned_cols=244 Identities=30% Similarity=0.492 Sum_probs=217.6
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC-CCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 002495 628 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 628 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~-~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl 706 (915)
...+.+|...|++++|++|+++|++++.|++|+|||+ ..+..++++++|...|++++|+|++++|++|+.|++|+|||+
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV 275 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence 3445889999999999999999999999999999999 567899999999999999999999999999999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eEEEeec-----CceEEEEecCCCEEEEEE
Q 002495 707 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKG-----GTAQMRFQPHLGRYLAAA 779 (915)
Q Consensus 707 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~--~~~~~~~-----~~~~v~~sp~~~~ll~~~ 779 (915)
++ +.+++.+.+|...|++++|.+++..+ ++++.|+.|+|||+.++. ++..+.. .+..+.|+|++.+++++.
T Consensus 276 ~~-~~~~~~l~~hs~~is~~~f~~d~~~l-~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 276 RT-GECVRKLKGHSDGISGLAFSPDGNLL-VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred cC-CeEEEeeeccCCceEEEEECCCCCEE-EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 98 89999999999999999999997654 577889999999999999 4555532 357789999999999999
Q ss_pred cCCeEEEEECCCceEEEEecCCCCC---eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-CCceEEEEE
Q 002495 780 AENVVSILDAETQACRLSLQGHTKP---IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVF 854 (915)
Q Consensus 780 ~dg~I~i~D~~t~~~~~~l~~h~~~---V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~ 854 (915)
.|+.+++||+..+.++..+.+|... +.+..+++.+.++++++.| .|++||+.++ ..+..+.+| ...+..+.+
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceecccc
Confidence 9999999999999999999998875 3444557789999999999 9999999875 566677777 788999999
Q ss_pred eCCCCEEEEEE--cCCeEEEEECC
Q 002495 855 HPTYPSLLVIG--CYQSLELWNMS 876 (915)
Q Consensus 855 spdg~~l~s~s--~dg~I~iwd~~ 876 (915)
++...++++++ .|+.|++|...
T Consensus 431 ~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCcCeeeecCcCCCceEEEecCC
Confidence 99999999998 68899999754
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=243.96 Aligned_cols=287 Identities=21% Similarity=0.310 Sum_probs=240.0
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeC--CCeE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTV 701 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~I 701 (915)
.++..+.++.-.+.|++|.|+.+|.+|++++.|.+|+|||..+++.++++..+...|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45566677777889999999999999999999999999999999999999999999999999888888877776 8999
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec-CceEEEEecCCCEEEEEEc
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GTAQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~-~~~~v~~sp~~~~ll~~~~ 780 (915)
|..++.+ .+.++.|.||...|.+|+.+|-++. +++++.|++|++||++..+|...+.. +...++|+|.|-.++++..
T Consensus 83 ryLsl~d-NkylRYF~GH~~~V~sL~~sP~~d~-FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHD-NKYLRYFPGHKKRVNSLSVSPKDDT-FLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeec-CceEEEcCCCCceEEEEEecCCCCe-EEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecC
Confidence 9999998 7889999999999999999998764 55999999999999999998887764 4566789999888888877
Q ss_pred CCeEEEEECCCc--eEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002495 781 ENVVSILDAETQ--ACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 854 (915)
Q Consensus 781 dg~I~i~D~~t~--~~~~~l~---~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 854 (915)
.+.|++||+|.- .+..++. +.....+.|.|+|||++|+.+... .+++.|.-+|.....+.........-..++|
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 779999999964 3333333 345678999999999988888877 8999999888533333333333333467889
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 855 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 855 spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~-h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
.||+.+|++|+.||+|.+|++++++.+ .+.+ +.+++.++.|+|.--++++++ ..+.+|
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 999999999999999999999999888 5666 799999999999876676664 467777
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=251.60 Aligned_cols=284 Identities=22% Similarity=0.391 Sum_probs=238.9
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC------------------CceeeEeccCCCcEEEEEECCC
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSPS 688 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t------------------~~~~~~l~~h~~~V~~l~fspd 688 (915)
+...+..|..+++|.+|++||.++|+|+.|..|+|+|++. .-.++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4566789999999999999999999999999999999861 1346778899999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCc--eEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe------e
Q 002495 689 MPRLATSSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------K 760 (915)
Q Consensus 689 g~~Lasgs~Dg~I~iWdl~~~~~--~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~------~ 760 (915)
..+|++|+.|++|++||+..... ..+.+ .....|.+|.|+|.|++++ .|..-.++++||+++..|.... .
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 99999999999999999975321 12222 2457899999999988665 8888899999999998886543 4
Q ss_pred cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC-CC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc
Q 002495 761 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 837 (915)
Q Consensus 761 ~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~-h~-~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~ 837 (915)
+.+.++.+++.+..+++++.||.|+|||--+++|+.++.. |. ..|++..|..+++||++.+.| .|++|.+.++ +
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R 338 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---R 338 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---c
Confidence 5778999999999999999999999999999999988864 54 469999999999999999999 9999999888 6
Q ss_pred eEEEeccCCC-----ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002495 838 CVHELSCNGN-----KFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 909 (915)
Q Consensus 838 ~i~~~~~~~~-----~i~~i~~spdg~~l~s~s~d-g~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~Dg 909 (915)
++.++.+.+. --+...|.....|++.-... +.++-||.++...+ ...+|.+.|+++.-+|.+..+++|++|.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 6666665421 12345677777777766553 68999999998776 4568999999999999999999999999
Q ss_pred cEEEcC
Q 002495 910 FVKLWK 915 (915)
Q Consensus 910 ~I~IWd 915 (915)
.+|+|.
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999994
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=264.26 Aligned_cols=291 Identities=16% Similarity=0.223 Sum_probs=235.6
Q ss_pred ccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----ceeeEec-cCCCcEEEEEECCCCCEEEEEeC
Q 002495 623 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLE-EHSSLITDVRFSPSMPRLATSSF 697 (915)
Q Consensus 623 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~----~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~ 697 (915)
+.......+.+|+..|.++++.|.|.+|++|+.|.+|++||+... +..+.+. .....|.++.|++.+..|++.+.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 455667788999999999999999999999999999999998732 2222222 34567999999999999999998
Q ss_pred CCeEEEEECCCCCceE------------EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEee----
Q 002495 698 DKTVRVWDADNPGYSL------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK---- 760 (915)
Q Consensus 698 Dg~I~iWdl~~~~~~~------------~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~-~~~~~---- 760 (915)
...++|+|-+. ...+ ...+||...++|.+|+|+....|++|+.||++||||++..+. +.+++
T Consensus 235 ~aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 235 SAQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred CcceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 99999999874 2222 233589999999999999988889999999999999987643 33332
Q ss_pred ----cCceEEEEecCCCEEEEEEcCCeEEEEECCCce---EEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002495 761 ----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA---CRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTV 830 (915)
Q Consensus 761 ----~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~---~~~~l~~h~~--~V~si~~spdg~~Las~s~d-~I~iwdl 830 (915)
..+..++|++++..|++++.||.|.+||..... ..+.-.+|.. .|+||.|++||++|++-+.| ++++||+
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 245778999999999999999999999986542 2333356877 89999999999999999988 9999999
Q ss_pred CCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEE
Q 002495 831 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVA 903 (915)
Q Consensus 831 ~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~------dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~La 903 (915)
+..++...+..--.....-+.|+|+|+.+.|++|.. .+.+++||..+...+ .+......|..+.|+|.-+.|+
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~ 473 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF 473 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence 976543333332233456788999999999999864 358999999998877 5666688899999999988899
Q ss_pred EEecCCcEEEc
Q 002495 904 SASHDKFVKLW 914 (915)
Q Consensus 904 sgs~Dg~I~IW 914 (915)
.|+.||.++||
T Consensus 474 ~gsgdG~~~vy 484 (641)
T KOG0772|consen 474 AGSGDGTAHVY 484 (641)
T ss_pred eecCCCceEEE
Confidence 99999999986
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=261.84 Aligned_cols=259 Identities=22% Similarity=0.419 Sum_probs=221.0
Q ss_pred CCCCCCcccccccCccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCC
Q 002495 609 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 688 (915)
Q Consensus 609 ~~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspd 688 (915)
.+|...++||.. +...+..+.+|++.|.|+.|. .++|++|+.|.+|+|||+.+++++.++-+|...|..+.|+.
T Consensus 214 lrDnTikiWD~n---~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n- 287 (499)
T KOG0281|consen 214 LRDNTIKIWDKN---SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN- 287 (499)
T ss_pred cccCceEEeccc---cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC-
Confidence 344444555544 567788899999999999996 45999999999999999999999999999999999999974
Q ss_pred CCEEEEEeCCCeEEEEECCCCC--ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEE
Q 002495 689 MPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM 766 (915)
Q Consensus 689 g~~Lasgs~Dg~I~iWdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v 766 (915)
.++++++.|.+|+|||+..+. .+.+.+.||...|+.+.|.. .+|++++.|.+|++|++.++++++++.++...+
T Consensus 288 -g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGI 363 (499)
T KOG0281|consen 288 -GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGI 363 (499)
T ss_pred -CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccc
Confidence 499999999999999998754 23467889999999999973 378899999999999999999999999887777
Q ss_pred EEecCC-CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCc------ce
Q 002495 767 RFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG------EC 838 (915)
Q Consensus 767 ~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~------~~ 838 (915)
++.-.. ..+++|++|.+|++||++.|.++..+.+|++-|.||.|+ .+.|++|..| +|+|||+..+... .|
T Consensus 364 AClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~C 441 (499)
T KOG0281|consen 364 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLC 441 (499)
T ss_pred eehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchH
Confidence 665544 455667779999999999999999999999999999997 6789999999 9999999876433 36
Q ss_pred EEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002495 839 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 881 (915)
Q Consensus 839 i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~ 881 (915)
+..+..|.+.|..+.| |...|++++.|.+|.|||+.++..-
T Consensus 442 l~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 442 LRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred HHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 6677778888988888 4567999999999999999877544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-28 Score=264.90 Aligned_cols=243 Identities=23% Similarity=0.365 Sum_probs=218.1
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl 706 (915)
.+++++-..-+|+++.|-.-.+++++|++|..|+||+..+++.++.|+.|.+.|+||+.+|...+++++|+|-+|++||.
T Consensus 47 mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 47 MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence 34455556678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCC--CEEEEEEcC
Q 002495 707 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL--GRYLAAAAE 781 (915)
Q Consensus 707 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~--~~ll~~~~d 781 (915)
+..-.+..+|.||...|.+|+|+|.....|++++-|++|++|.+....+..++++ ++.++++-+.+ .++++++.|
T Consensus 127 e~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 127 ENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred cCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 9877888999999999999999999999999999999999999999988888876 56888887755 589999999
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 860 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~ 860 (915)
.+|+|||..+..|+.++.+|...|..++|+|.-.+|++|++| +|+||+..+- +....+.-....+++++..+.++.
T Consensus 207 ~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~ 283 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGK 283 (794)
T ss_pred ceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCe
Confidence 999999999999999999999999999999999999999999 9999998765 444555556778999999998888
Q ss_pred EEEEEcCCeEEE
Q 002495 861 LLVIGCYQSLEL 872 (915)
Q Consensus 861 l~s~s~dg~I~i 872 (915)
+++|...|.|.|
T Consensus 284 i~vG~Deg~i~v 295 (794)
T KOG0276|consen 284 IAVGFDEGSVTV 295 (794)
T ss_pred EEEeccCCcEEE
Confidence 888777665543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=253.85 Aligned_cols=276 Identities=21% Similarity=0.369 Sum_probs=233.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCC---EEEEEeCCCeEEEEECCCC
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSSFDKTVRVWDADNP 709 (915)
Q Consensus 633 ~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~---~Lasgs~Dg~I~iWdl~~~ 709 (915)
.|.+-|.+|... ++.|++|++||.++|||. .|+..+++.+|.++|.+++|.-.+. .|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488889998887 679999999999999996 5889999999999999888865333 5999999999999999864
Q ss_pred Cce---EEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------------------------eeEEEeec
Q 002495 710 GYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------------------------SCTRVFKG 761 (915)
Q Consensus 710 ~~~---~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~-------------------------~~~~~~~~ 761 (915)
... +....||...|.+|+..+++.. +++|+.|..|+||+..+. ..+..+.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 322 2334599999999999999764 559999999999994321 11222333
Q ss_pred ---CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc
Q 002495 762 ---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 837 (915)
Q Consensus 762 ---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~ 837 (915)
.+..+.|++ ...+++++.|.+|+.||++++.++.++.+ ...++|+.+++..++|++|+.| .|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 345567777 68899999999999999999999888774 5679999999999999999999 99999999997778
Q ss_pred eEEEeccCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCc-EE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 838 CVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENK-TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 838 ~i~~~~~~~~~i~~i~~spdg~-~l~s~s~dg~I~iwd~~~~~-~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
....+.+|.+.|.++.|+|... .|++++.|+++++||+++.+ .+ .+.+|.+.|.++.|. ++.+|++|+.|++|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 8889999999999999999765 47788899999999999877 44 889999999999995 45689999999999998
Q ss_pred C
Q 002495 915 K 915 (915)
Q Consensus 915 d 915 (915)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 5
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=260.77 Aligned_cols=282 Identities=18% Similarity=0.347 Sum_probs=237.6
Q ss_pred ccceeeeEeecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeE
Q 002495 623 FSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 701 (915)
Q Consensus 623 ~~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 701 (915)
|.-..+..|.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..+|+.|.+.|..|++.. ..+++++.|++|
T Consensus 54 fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 54 FAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred hhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcce
Confidence 3445677889999999999999987 7899999999999999999999999999999999999987 689999999999
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEE
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 778 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~ 778 (915)
+.|.++. ..++++.+ ...+..|+-+.. ..+++||+. .|.|||......+..+.- .+.++.|+|....++++
T Consensus 132 K~wk~~~--~p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 132 KQWKIDG--PPLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILAS 205 (433)
T ss_pred eeeeccC--Ccceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheee
Confidence 9999985 35666654 345667776654 346778864 589999998888887764 45788899988776665
Q ss_pred E-cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC
Q 002495 779 A-AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 856 (915)
Q Consensus 779 ~-~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 856 (915)
+ +|+.|.+||++...++..+. -...-+.|||+|.+..++++++| .++.||++... ..+....+|.+.|.++.|+|
T Consensus 206 ~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred eccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCC
Confidence 5 79999999999998776654 23456789999988889999999 99999998654 56777788999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 857 TYPSLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 857 dg~~l~s~s~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.|..|++|+.|.+|+||.++.+....+ ...-..|.|+.|+-|.+||++||+|+.||+|+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999999998876532 23345799999999999999999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-27 Score=250.74 Aligned_cols=242 Identities=33% Similarity=0.609 Sum_probs=215.7
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 002495 628 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 707 (915)
Q Consensus 628 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~ 707 (915)
...+..|...|.++.|++++++|++++.||.|++||+.+++.+..+..|...|.++.|++++.+|++++.|+.|++||++
T Consensus 44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 34566788899999999999999999999999999999888889999999999999999998889888889999999998
Q ss_pred CCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEEEcCCeE
Q 002495 708 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVV 784 (915)
Q Consensus 708 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I 784 (915)
+ ......+..|...|.+++|++++ .++++++.|+.|++||+++++.+..+.. .+.++.|++++..+++++.++.|
T Consensus 124 ~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 124 T-GKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred C-cEEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 6 66777788899999999999984 4665777799999999998887776653 46789999999999999999999
Q ss_pred EEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEE
Q 002495 785 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 863 (915)
Q Consensus 785 ~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s 863 (915)
++||+++++.+..+..|...|.+++|++++.++++++.+ .|++||+.++ ..+..+..+...+.++.|++++.+|++
T Consensus 202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred EEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEE
Confidence 999999999998888899999999999998899988856 9999999865 556666678889999999999999999
Q ss_pred EEcCCeEEEEE
Q 002495 864 IGCYQSLELWN 874 (915)
Q Consensus 864 ~s~dg~I~iwd 874 (915)
++.|+.|++|+
T Consensus 279 ~~~d~~i~iw~ 289 (289)
T cd00200 279 GSADGTIRIWD 289 (289)
T ss_pred ecCCCeEEecC
Confidence 99999999996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=252.91 Aligned_cols=276 Identities=24% Similarity=0.412 Sum_probs=238.0
Q ss_pred eEEEEcCCCceecCC---CCeeEeCCCchhhhhhhhhcccCCCCCceeeecccCCCCCCCCCCcccccccCccceeeeEe
Q 002495 555 LMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV 631 (915)
Q Consensus 555 ~~~fs~dg~~~~~~~---~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l 631 (915)
+..|||||.|++++. -+++||..+|+++.++.-- .-..+
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ--------------------------------------Aqd~f 259 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ--------------------------------------AQDNF 259 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhh--------------------------------------hhcce
Confidence 558999999998854 4588999999988775321 11234
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEec-cCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 002495 632 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 710 (915)
Q Consensus 632 ~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~ 710 (915)
.-|.+.|.|++||.|...||+|+.||+|+||.+.++.+++.|. .|...|+|+.|+.|+..|++++.|.+|||.-+.+ +
T Consensus 260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-G 338 (508)
T KOG0275|consen 260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-G 338 (508)
T ss_pred eecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-c
Confidence 5578899999999999999999999999999999999999997 8999999999999999999999999999999998 8
Q ss_pred ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec-----CceEEEEecCC-CEEEEEEcCCeE
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHL-GRYLAAAAENVV 784 (915)
Q Consensus 711 ~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~-~~ll~~~~dg~I 784 (915)
++++.++||+..|+...|.++|.++| +++.||+|++|+.++.+|+.+|+. .+..+...|.+ ..++++...++|
T Consensus 339 K~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 339 KCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred hhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 89999999999999999999988766 999999999999999999999874 34556666655 577788888999
Q ss_pred EEEECCCceEEEEecC---CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002495 785 SILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 860 (915)
Q Consensus 785 ~i~D~~t~~~~~~l~~---h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~ 860 (915)
+|.++. |..++.+.. ..+...+++.+|.|+++++.++| .++.|.+.++ .....+..|+..+..++-||..+.
T Consensus 418 ~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 418 YIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNL 493 (508)
T ss_pred EEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccch
Confidence 999875 455555543 34567788899999999999999 8999999887 566777888999999999999999
Q ss_pred EEEEEcCCeEEEEE
Q 002495 861 LLVIGCYQSLELWN 874 (915)
Q Consensus 861 l~s~s~dg~I~iwd 874 (915)
|++-+.||.+++|.
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 99999999999995
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=269.73 Aligned_cols=241 Identities=25% Similarity=0.432 Sum_probs=208.1
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 709 (915)
Q Consensus 630 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~ 709 (915)
.|.+|.++|+.|+|+|.+.++++|++|.+|+||+.++.+++.++.+|-+.|..+.|++.-.+|+++|+|-+|+||+..+
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs- 124 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS- 124 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-----------------------------eEEEee
Q 002495 710 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-----------------------------CTRVFK 760 (915)
Q Consensus 710 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~-----------------------------~~~~~~ 760 (915)
..++..++||...|.|..|+|.. .+|++++-|-+||+||+..-+ ...+++
T Consensus 125 r~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 125 RKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred CceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 88999999999999999999974 477799999999999985311 111223
Q ss_pred c---CceEEEEecCCCEEEEEEcCCeEEEEECCCce--EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002495 761 G---GTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 834 (915)
Q Consensus 761 ~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~--~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~ 834 (915)
+ ++..++|+|....+++|+.|..|++|.....+ .+-+..+|...|.++-|+|..++|++.++| +|+|||+...
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR- 282 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR- 282 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-
Confidence 3 45678899999999999999999999887654 345678999999999999999999999999 9999999765
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002495 835 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 835 ~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~ 876 (915)
..+..++.....++.++.||..+.+++|. |+.+.||.+.
T Consensus 283 --t~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 283 --TSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred --cceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence 67777777788999999999998666654 4444445443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=238.36 Aligned_cols=276 Identities=21% Similarity=0.375 Sum_probs=228.9
Q ss_pred eEEEEEcC-CCCEEEEEE-------CCCcEEEEECCCCceeeEec--cCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEC
Q 002495 638 VICCHFSS-DGKLLATGG-------HDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPS-MPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 638 V~~lafsp-dg~~Lasgs-------~Dg~V~vwd~~t~~~~~~l~--~h~~~V~~l~fspd-g~~Lasgs~Dg~I~iWdl 706 (915)
=+++.||| -..+||++. ..|++.|.++...+-+..+. .-.+.+.+++|+++ .+.+++++.||+++|||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 35788998 223444443 46899999986444444443 35678999999995 457888999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceE---EEEecCCC-EEEEEEcCC
Q 002495 707 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHLG-RYLAAAAEN 782 (915)
Q Consensus 707 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~---v~~sp~~~-~ll~~~~dg 782 (915)
..+..++..++.|...|.++.|++..+..+++++.|++|++|+......+.+|.++..+ ..|+|... .++.++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 88888999999999999999999988888889999999999999999999999987655 56888775 556677799
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC-C
Q 002495 783 VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-P 859 (915)
Q Consensus 783 ~I~i~D~~t~~~~~~l~~h~~~V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg-~ 859 (915)
.+++||++.......+..|...|.|+.|+. +.++|++++.| .|++||+++-+ ..+.++.+|+..|..+.|+|.. .
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence 999999997654455889999999999998 45588899999 99999999765 5688889999999999999965 5
Q ss_pred EEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEecCCcEEEcC
Q 002495 860 SLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 915 (915)
Q Consensus 860 ~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~IWd 915 (915)
.|++++.|-+++|||....... +..-|..-|..+.|++ +..++|+++.|+.++||+
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 6778888999999999865543 6667889999999987 566999999999999996
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=236.61 Aligned_cols=266 Identities=22% Similarity=0.381 Sum_probs=215.7
Q ss_pred hcccCCCCCceeeecccCCCCCCCCCCcccccccCccceeeeEe-ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC-
Q 002495 588 LVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD- 665 (915)
Q Consensus 588 ~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l-~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~- 665 (915)
+++.++-|+.++.|-. ..+.++.++..+ .+|+..|++|+|+|.|++||+|++|.++.||.-.
T Consensus 29 ilAscg~Dk~vriw~~----------------~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWST----------------SSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED 92 (312)
T ss_pred EEEeecCCceEEEEec----------------CCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC
Confidence 4566666666665533 222356677666 4899999999999999999999999999999865
Q ss_pred -CCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC--CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCC
Q 002495 666 -TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 742 (915)
Q Consensus 666 -t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~--~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~D 742 (915)
..+++.++++|...|.|++|+++|++||+++.|+.|-||.+.. .-.++..+.+|...|..+.|+|... ||++++.|
T Consensus 93 ~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYD 171 (312)
T KOG0645|consen 93 GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYD 171 (312)
T ss_pred CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccC
Confidence 5688999999999999999999999999999999999999984 3456788999999999999999744 77799999
Q ss_pred CcEEEEEcCC---CeeEEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCE
Q 002495 743 GEIRYWSINN---GSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL 816 (915)
Q Consensus 743 g~I~iwdl~~---~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~ 816 (915)
++|++|+-.. -.|+.++.++ +-++.|++.+.++++++.|++|+||-..+.-. ..|...+..+.|. ...
T Consensus 172 nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~ 245 (312)
T KOG0645|consen 172 NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGV 245 (312)
T ss_pred CeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccc
Confidence 9999998772 2567777664 46688999999999999999999998663211 2377889999999 456
Q ss_pred EEEEeCC-eEEEEECCCCCC---cce-EEEeccCCCceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 002495 817 LASVSED-SVRVWTVGSGSE---GEC-VHELSCNGNKFHSCVFHPT-YPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 817 Las~s~d-~I~iwdl~s~~~---~~~-i~~~~~~~~~i~~i~~spd-g~~l~s~s~dg~I~iwd~~ 876 (915)
|++++.| .|+||....... ... .+....|+..|+++.|.|. ...|++++.||.|++|.+.
T Consensus 246 IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 246 IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 7787777 999998765311 112 2344568889999999995 7789999999999999864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=239.98 Aligned_cols=243 Identities=22% Similarity=0.370 Sum_probs=212.5
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCC-EEEEEeCCCeEEEEE
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD 705 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~iWd 705 (915)
....+++|.+.|..+.|..|+..|++++.|++|+.||+++++.++.+++|...|..+.-+.-|. ++.+++.|++++|||
T Consensus 82 N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 82 NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence 3456679999999999999999999999999999999999999999999999999998555444 567788899999999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEecCCCEEEEEEcCC
Q 002495 706 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAEN 782 (915)
Q Consensus 706 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg 782 (915)
++. +..++++. ....++++.|...+..++ +|+-|+.|++||++...++.++.++ +..+..++++..+++-+.|.
T Consensus 162 ~R~-k~~~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 162 IRK-KEAIKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred ecc-cchhhccc-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccc
Confidence 997 55666554 457799999998887776 9999999999999999999998875 56788999999999999999
Q ss_pred eEEEEECCCc----eEEEEecCCCC----CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002495 783 VVSILDAETQ----ACRLSLQGHTK----PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853 (915)
Q Consensus 783 ~I~i~D~~t~----~~~~~l~~h~~----~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 853 (915)
+|++||++-. +++..+.+|.. ....++|+|++..+.+++.| .+++||.... .++..+.+|.+.|.++.
T Consensus 239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~ 315 (338)
T KOG0265|consen 239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVD 315 (338)
T ss_pred eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEee
Confidence 9999999854 56777777543 45678999999999999999 9999999765 78999999999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEEC
Q 002495 854 FHPTYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 854 ~spdg~~l~s~s~dg~I~iwd~ 875 (915)
|+|....|++++.|++|++=++
T Consensus 316 Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 316 FHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred ecCCCcEEEEeccCceeEeecc
Confidence 9999999999999999987443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-29 Score=266.08 Aligned_cols=247 Identities=18% Similarity=0.312 Sum_probs=218.9
Q ss_pred CCceeeEeccCCCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc
Q 002495 666 TLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 744 (915)
Q Consensus 666 t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~ 744 (915)
..+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++...+.++++|.+|..+|.+++|+.++..+| +++.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeeccee
Confidence 3456788899999999999999 8889999999999999999988999999999999999999999988777 9999999
Q ss_pred EEEEEcCCCeeEEEeec--CceEEEEecCC-CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 002495 745 IRYWSINNGSCTRVFKG--GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 821 (915)
Q Consensus 745 I~iwdl~~~~~~~~~~~--~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s 821 (915)
|++||+++|+++..|.. ...++.|.|++ +.+++|+.|+.|+.||+++++.+.++..|-+.|..|.|-++|+.+++.+
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999998875 45889999999 7889999999999999999999999999999999999999999999999
Q ss_pred CC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EEcccC--CCeEEEE
Q 002495 822 ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHE--GLIAALA 894 (915)
Q Consensus 822 ~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~----~~~~h~--~~V~~l~ 894 (915)
+| +|+||+.+.....+.+... +.....+|..+|.++++++-+.|+.|.+|.+...-.+ .+.+|. +.-..+.
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cCccEEEEEcCCCccchhhcch--hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 99 9999999877444443332 2445678899999999999999999999987654333 566775 4566789
Q ss_pred EeCCCCEEEEEecCCcEEEcC
Q 002495 895 VSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 895 ~spdg~~Lasgs~Dg~I~IWd 915 (915)
|+|||++|++|+.||.|.+||
T Consensus 440 fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred EcCCCCeEEeecCCccEEEee
Confidence 999999999999999999997
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=253.73 Aligned_cols=277 Identities=19% Similarity=0.279 Sum_probs=233.2
Q ss_pred CCceEEEEcCCCceecCCCC---eeEeCCCchhhhhhhhhcccCCCCCceeeecccCCCCCCCCCCcccccccCccceee
Q 002495 552 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 628 (915)
Q Consensus 552 ~~~~~~fs~dg~~~~~~~~~---~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 628 (915)
--+.+.||++|+|+++.... -+|++. ....++.+
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~-------------------------------------------~d~~~kl~ 262 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVV-------------------------------------------YDVHFKLK 262 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEe-------------------------------------------cCcceeee
Confidence 45899999999999875433 345442 11157788
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEec-cCCCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 707 (915)
Q Consensus 629 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~ 707 (915)
+++.+|..+|..|.||||.++|++|+.|..+++||+.++.....+. +|...+.+++|.|||..+++|+.|++|..||++
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 9999999999999999999999999999999999999999888775 457889999999999999999999999999998
Q ss_pred CCCceEEEeccCC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--ecCceEEEEecCCCEEEEEEcCCeE
Q 002495 708 NPGYSLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVV 784 (915)
Q Consensus 708 ~~~~~~~~~~~h~-~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~I 784 (915)
. ..+..+.+.. -.|.+++..+||+.++ +.+.|..|++|+.++..++..+ ..++.+++++.++.++++.-.+..|
T Consensus 343 g--n~~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 343 G--NILGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred c--chhhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence 4 4555555543 5699999999999887 5557999999999887766443 3577889999999999999999999
Q ss_pred EEEECCCceEEEEecCCCCC--eEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC-C
Q 002495 785 SILDAETQACRLSLQGHTKP--IDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-P 859 (915)
Q Consensus 785 ~i~D~~t~~~~~~l~~h~~~--V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg-~ 859 (915)
.+||++..+.+..+.||... |..-||-- +..++++|++| .|+||+..++ +.+.++.+|...|.+++|+|.. .
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCCHH
Confidence 99999999999999998764 33445654 44799999999 9999999887 8899999999999999999965 5
Q ss_pred EEEEEEcCCeEEEEECCC
Q 002495 860 SLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 860 ~l~s~s~dg~I~iwd~~~ 877 (915)
.+++++.||+|+||....
T Consensus 497 m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGPSD 514 (519)
T ss_pred HhhccCCCCeEEEecCCc
Confidence 688889999999998654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-27 Score=247.01 Aligned_cols=276 Identities=24% Similarity=0.388 Sum_probs=243.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEE
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 714 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~ 714 (915)
...|+++...+....++||+.|+.+.++|......+.+++||...|+.+.|+++...+++++.|..|+||.... ..+..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcc
Confidence 35688888888778999999999999999999999999999999999999999999999999999999999987 44667
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC-----ceEEEEecCCCEEEEEEcCCeEEEEEC
Q 002495 715 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPHLGRYLAAAAENVVSILDA 789 (915)
Q Consensus 715 ~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~-----~~~v~~sp~~~~ll~~~~dg~I~i~D~ 789 (915)
....|..+|+.+..+|.|+++| +++.|+++.+.|++++.++...... ..+..|+||+-.|.++..|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 7788999999999999988766 9999999999999999988776543 577899999999999999999999999
Q ss_pred CCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002495 790 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 868 (915)
Q Consensus 790 ~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg 868 (915)
.+...+..|.+|.++|..|.|+.+|.||+++++| .|++||+|..+..+.+..- ....+.++.|...|.++++++.|=
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc--ccccceeEEEcCCCCeEEeeccee
Confidence 9999999999999999999999999999999999 7999999877543333221 234799999999999999998877
Q ss_pred eEEEEECCCCc--EE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 869 SLELWNMSENK--TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 869 ~I~iwd~~~~~--~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
.|++++-.+.. ++ .+..|.+..+++.|.....++++++.|..++|+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 88888755543 33 677888999999999999999999999999886
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=252.01 Aligned_cols=274 Identities=19% Similarity=0.306 Sum_probs=238.9
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceE
Q 002495 635 TSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 713 (915)
Q Consensus 635 ~~~V~~lafspdg~-~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~ 713 (915)
.+.|.+++|+|... -+|+++ .-.|.||+..+...++++....+.|++++|..||++|++|...|.|+|||+.+ ...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 45799999999553 344443 45899999998888888888899999999999999999999999999999665 6678
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEecCCC-EEEEEEcCCeEEEEEC
Q 002495 714 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLG-RYLAAAAENVVSILDA 789 (915)
Q Consensus 714 ~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~-~ll~~~~dg~I~i~D~ 789 (915)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+.++ +.+..|+|-.. .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 8999999999999999999999999999999999999998875555554 56777888766 5667788999999999
Q ss_pred CCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002495 790 ETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 868 (915)
Q Consensus 790 ~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg 868 (915)
+.. ..+.++. |..+|.+++|-|.|.+|++++...|+|||+.+|. ..+.....|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 988 5666655 9999999999999999999999999999998764 34445555889999999999999999999999
Q ss_pred eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002495 869 SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 913 (915)
Q Consensus 869 ~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~I 913 (915)
.|++||+.+-+.+.-....++|.+|+.+|++..++.|..||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999999998888888999999999999999999999998754
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=269.61 Aligned_cols=242 Identities=22% Similarity=0.331 Sum_probs=199.4
Q ss_pred eEee-cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-----------------------------------------
Q 002495 629 NSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----------------------------------------- 666 (915)
Q Consensus 629 ~~l~-~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t----------------------------------------- 666 (915)
..+. +|.+.|+|+.||+||+|||+||.||.|+||.+..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3445 8999999999999999999999999999997643
Q ss_pred -------------------CceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEE
Q 002495 667 -------------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 727 (915)
Q Consensus 667 -------------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~ 727 (915)
.+++..|.+|.+.|.+|.|+.++ +|++++.|++||+|++.. ..++++|. |.+.|+||+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEEEE
Confidence 01223466899999999999775 999999999999999997 78888886 999999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC--C--
Q 002495 728 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-- 801 (915)
Q Consensus 728 fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h-- 801 (915)
|+|.++++|++|+-||.||||++...+++... +.-++.++|.|+|...++|+.+|.+++|+.+..+....+.. |
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 99998899999999999999999988877654 45679999999999999999999999999998776654421 1
Q ss_pred ----CCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCC--CceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002495 802 ----TKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVFHPTYPSLLVIGCYQSLELW 873 (915)
Q Consensus 802 ----~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~--~~i~~i~~spdg~~l~s~s~dg~I~iw 873 (915)
...|+.+.|.|... .|++.+.| .|+|||.+.. ..+..+++.. ..-....|+.||++|++++.|..|+||
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 22799999998433 45556666 9999999765 4444444332 234566899999999999999999999
Q ss_pred ECC
Q 002495 874 NMS 876 (915)
Q Consensus 874 d~~ 876 (915)
++.
T Consensus 574 ~~~ 576 (712)
T KOG0283|consen 574 KND 576 (712)
T ss_pred eCC
Confidence 973
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-27 Score=269.43 Aligned_cols=270 Identities=27% Similarity=0.471 Sum_probs=237.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeE-eccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 711 (915)
Q Consensus 633 ~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~ 711 (915)
.|...|.|..|. ..++++++.|.+|.+||..++..+.. +.+|.+.|.+++|...+.+|++|+.|.+++|||+.+ +.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~ 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-GE 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-Cc
Confidence 367788899998 45899999999999999999998888 999999999999998788999999999999999887 89
Q ss_pred eEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEE-EEecCCCEEEEEEcCCeEEEEECC
Q 002495 712 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM-RFQPHLGRYLAAAAENVVSILDAE 790 (915)
Q Consensus 712 ~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v-~~sp~~~~ll~~~~dg~I~i~D~~ 790 (915)
+...+.+|...|.++...+ .++++|+.|.+|++|++.++.++..+.++...| ++.-+++.+++++.|++|.+||+.
T Consensus 283 C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhh
Confidence 9999999999999999874 467789999999999999999999988654333 234448899999999999999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCe
Q 002495 791 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 869 (915)
Q Consensus 791 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~ 869 (915)
++++++++.+|...|.++.+... .++++|+.| +|++||+++.. +|+..+.+|...+..+.+ .+++|++++.|+.
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT 434 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccccc
Confidence 99999999999999999988765 899999999 89999998764 788999998888855544 6778999999999
Q ss_pred EEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 870 LELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 870 I~iwd~~~~~~~-~~~~-h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
|++||..+++++ .+.+ |...|.++++. ...+++++.||.+++||
T Consensus 435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred EEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 999999999988 5556 67899999887 45788999999999997
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-27 Score=227.51 Aligned_cols=268 Identities=24% Similarity=0.348 Sum_probs=230.4
Q ss_pred CceEEEEcCCCceecCCCC---eeEeCCCchhhhhhhhhcccCCCCCceeeecccCCCCCCCCCCcccccccCccceeee
Q 002495 553 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 629 (915)
Q Consensus 553 ~~~~~fs~dg~~~~~~~~~---~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 629 (915)
-..+.|.-||.|.++.++. +||++..+ ..++
T Consensus 20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg----------------------------------------------~lik 53 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRG----------------------------------------------ALIK 53 (307)
T ss_pred eEEEEEccCCCEEEEcCCCceEEeeccccc----------------------------------------------ceee
Confidence 3567888999998886554 66766543 3567
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 709 (915)
Q Consensus 630 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~ 709 (915)
++.+|...|..++.+.|...|++|+.|+.|.+||+++++.++.+++|.+.|+.++|+.+...+++|+.|.+|++||.++.
T Consensus 54 tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~ 133 (307)
T KOG0316|consen 54 TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR 133 (307)
T ss_pred eecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred -CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-ecCceEEEEecCCCEEEEEEcCCeEEEE
Q 002495 710 -GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMRFQPHLGRYLAAAAENVVSIL 787 (915)
Q Consensus 710 -~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~-~~~~~~v~~sp~~~~ll~~~~dg~I~i~ 787 (915)
.+++..+....+.|.+|... ++.|++|+.||++|.||++.|.....+ ..++++++|+++++..++++-|++|++.
T Consensus 134 s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLl 210 (307)
T KOG0316|consen 134 SFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLL 210 (307)
T ss_pred CCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeec
Confidence 35678888888999999997 446779999999999999999887665 4578999999999999999999999999
Q ss_pred ECCCceEEEEecCCCCCe--EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc-eEEEEEeCCCCEEEE
Q 002495 788 DAETQACRLSLQGHTKPI--DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTYPSLLV 863 (915)
Q Consensus 788 D~~t~~~~~~l~~h~~~V--~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~-i~~i~~spdg~~l~s 863 (915)
|-++++.+..+++|...- ..+++......+++|++| .|++||+... ..+..+..+... +.++.++|.-..|++
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~~ 287 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFIT 287 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCccceeE
Confidence 999999999999997653 345677777899999999 9999999766 667777776666 899999999888888
Q ss_pred EEcCCeEEEE
Q 002495 864 IGCYQSLELW 873 (915)
Q Consensus 864 ~s~dg~I~iw 873 (915)
+...+ +.+|
T Consensus 288 A~~~~-~~~~ 296 (307)
T KOG0316|consen 288 ATGHG-DLFW 296 (307)
T ss_pred ecCCc-eece
Confidence 76544 4444
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-26 Score=261.27 Aligned_cols=247 Identities=15% Similarity=0.190 Sum_probs=200.2
Q ss_pred EECCCcEEEEECCCCceeeEeccCCCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCc-------eEEEeccCCCCeE
Q 002495 653 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGY-------SLRTFMGHSASVM 724 (915)
Q Consensus 653 gs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~iWdl~~~~~-------~~~~~~~h~~~V~ 724 (915)
|+.++.|+||+......+..+.+|.+.|.+|+|+|+ +.+|++|+.|++|+|||+.+.+. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998887888999999999999999996 78999999999999999976332 3456789999999
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC
Q 002495 725 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 802 (915)
Q Consensus 725 sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~ 802 (915)
+++|+|++..+|++++.|++|+|||+++++.+..+. ..+.++.|++++..+++++.|+.|+|||+++++.+.++.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 999999988888899999999999999988766553 457889999999999999999999999999999999999998
Q ss_pred CCeEEE-----EEcCCCCEEEEEeCC-----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 002495 803 KPIDSV-----CWDPSGELLASVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 872 (915)
Q Consensus 803 ~~V~si-----~~spdg~~Las~s~d-----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~i 872 (915)
+.+.+. .|++++.+|++++.+ .|+|||++..........+..+...+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765432 345788888887755 5999999864433333334443344444444566888999999999999
Q ss_pred EECCCCcEEEE--cccCCCeEEEEEeCCC
Q 002495 873 WNMSENKTMTL--TAHEGLIAALAVSTET 899 (915)
Q Consensus 873 wd~~~~~~~~~--~~h~~~V~~l~~spdg 899 (915)
|++..+....+ ..+..++.+++|.|..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 3467789999999864
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=281.75 Aligned_cols=238 Identities=18% Similarity=0.251 Sum_probs=199.9
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCce
Q 002495 635 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS 712 (915)
Q Consensus 635 ~~~V~~lafsp-dg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~iWdl~~~~~~ 712 (915)
...|.+++|++ ++.+||+++.||+|+|||+.+++.+..+.+|.+.|++++|++ ++.+|++|+.|++|+|||+++ +..
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~ 610 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVS 610 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcE
Confidence 45799999987 478999999999999999999999999999999999999997 788999999999999999987 566
Q ss_pred EEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEee---cCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002495 713 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 788 (915)
Q Consensus 713 ~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~-~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D 788 (915)
+..+..+ ..|.++.|++....+|++|+.||.|++||+++.+ .+..+. ..+..+.|. ++..+++++.|+.|+|||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 7777644 6799999976656678899999999999998765 344443 345677886 678899999999999999
Q ss_pred CCC------ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce--------E--EEeccCCCceEE
Q 002495 789 AET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC--------V--HELSCNGNKFHS 851 (915)
Q Consensus 789 ~~t------~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~--------i--~~~~~~~~~i~~ 851 (915)
++. ..++..+.+|...+.+++|++++.+|++|+.| .|+||+......... + .....+...|.+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 984 35778899999999999999999999999999 999999865421110 0 012234567999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEC
Q 002495 852 CVFHPTYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 852 i~~spdg~~l~s~s~dg~I~iwd~ 875 (915)
++|++++..|++++.||.|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999996
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=258.37 Aligned_cols=263 Identities=15% Similarity=0.234 Sum_probs=207.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce----------e---eEeccCCCcEEEEEECC-CCCEEEEEeCCC
Q 002495 634 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----------K---TNLEEHSSLITDVRFSP-SMPRLATSSFDK 699 (915)
Q Consensus 634 H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~----------~---~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg 699 (915)
|-..|+...+++|+..+++++.+..+..|+...+.. . ..+.+|.+.|++++|+| ++.+|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 344566666677766667666666666666433221 1 24678999999999999 888999999999
Q ss_pred eEEEEECCCCC------ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEec
Q 002495 700 TVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQP 770 (915)
Q Consensus 700 ~I~iWdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp 770 (915)
+|+|||+.+.+ ..+..+.+|...|.+|+|+|++..+|++++.|++|+|||+++++.+..+.+ .+.++.|++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 99999997632 356788999999999999998777888999999999999999988877754 467899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC-eEEEEEcCCCCEEEEEe----CC-eEEEEECCCCCCcceEEEecc
Q 002495 771 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS----ED-SVRVWTVGSGSEGECVHELSC 844 (915)
Q Consensus 771 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~-V~si~~spdg~~Las~s----~d-~I~iwdl~s~~~~~~i~~~~~ 844 (915)
++..+++++.|+.|+|||+++++.+..+.+|... +..+.|.+++.+|++++ .| .|+|||+++... .+.....
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~ 256 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDL 256 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEecc
Confidence 9999999999999999999999999999988765 45678999888777654 24 899999987543 2333322
Q ss_pred C-CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEE--cccCCCeEEEEEeCC
Q 002495 845 N-GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTL--TAHEGLIAALAVSTE 898 (915)
Q Consensus 845 ~-~~~i~~i~~spdg~~l~s~s-~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spd 898 (915)
+ ...+..+.|++++.+|++++ .|+.|++||+.+++.+.. ..+..++..++|.|.
T Consensus 257 d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 257 DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 2 34456667999999999888 599999999999887732 345567888888875
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=230.58 Aligned_cols=270 Identities=16% Similarity=0.272 Sum_probs=221.0
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCC-Ccee-eEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 002495 633 ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 709 (915)
Q Consensus 633 ~H~~~V~~lafsp-dg~~Lasgs~Dg~V~vwd~~t-~~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~ 709 (915)
.-.+.|.+|+||| ...+|++++.||+||+|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S- 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS- 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-
Confidence 4567899999999 556777999999999999985 3332 44567999999999999999999999999999999998
Q ss_pred CceEEEeccCCCCeEEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002495 710 GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 788 (915)
Q Consensus 710 ~~~~~~~~~h~~~V~sl~fsp~~~-~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 788 (915)
+ .+..+..|.++|.++.|.+... .+|++|+.|.+|++||.+....+.++.-+..+.+.+.....++++..+..|.+|+
T Consensus 104 ~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 104 G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 4 5677778999999999987543 3678999999999999999999998888777777777778899999999999999
Q ss_pred CCCceEEEEe-c-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC---------CceEEEEEeC
Q 002495 789 AETQACRLSL-Q-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHP 856 (915)
Q Consensus 789 ~~t~~~~~~l-~-~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~---------~~i~~i~~sp 856 (915)
++.+...... . .-.-.++||+...|....+.|+-+ .+.|..+..+.. +.-..+++|. ..|.+|+|+|
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeec
Confidence 9876433221 1 122348899998888877777776 888888876533 3334444444 2477899999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 002495 857 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 905 (915)
Q Consensus 857 dg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasg 905 (915)
....|+++|.||++.+||-.....+ ....|..+|+|.+|+.+|.++|-+
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999999887666 678999999999999999988765
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=232.57 Aligned_cols=252 Identities=19% Similarity=0.278 Sum_probs=224.0
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~i 703 (915)
+-.-+.+|++|.+.|+...++.+..+.|+++.|-+.+|||.-++..+..|. |...|.+++|+.|.++|++|+.++.+||
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrv 126 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRV 126 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhh
Confidence 334568899999999999999999999999999999999999999998885 8889999999999999999999999999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--cCceEEEEecCCCEEEEEEcC
Q 002495 704 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE 781 (915)
Q Consensus 704 Wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~d 781 (915)
||+..+..+...+.+|.+.|..+.|+.....+| ++..|++||+||.++++.+..+. .++.++.++++ +.+++.+..
T Consensus 127 fdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~d-G~ilTia~g 204 (334)
T KOG0278|consen 127 FDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQD-GRILTIAYG 204 (334)
T ss_pred hhccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccC-CCEEEEecC
Confidence 999998889999999999999999998766666 77899999999999999988764 57888899888 556677788
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 860 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~ 860 (915)
+.|.+||..+...++.++ -...|.+..++|+..++++|++| .++.||+.++.+..+. .++|.++|.++.|+|+|..
T Consensus 205 ssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred ceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCce
Confidence 899999999998887766 45679999999999999999999 9999999998654442 4789999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE
Q 002495 861 LLVIGCYQSLELWNMSENKTM 881 (915)
Q Consensus 861 l~s~s~dg~I~iwd~~~~~~~ 881 (915)
.++|+.||+|+||-...++..
T Consensus 282 yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeccCCCceEEEEEecCCCch
Confidence 999999999999998776544
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=232.86 Aligned_cols=287 Identities=17% Similarity=0.325 Sum_probs=242.9
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~i 703 (915)
.+..++.+.+|.+.|+.++......++.+++.|.+.+||.+++++++.++.+|.+.|++|+|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56677889999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EEC------CC-----------------------------C----CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc
Q 002495 704 WDA------DN-----------------------------P----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 744 (915)
Q Consensus 704 Wdl------~~-----------------------------~----~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~ 744 (915)
|.. .. . ..++..+++|...|.+..|...+..++ +++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeecccc
Confidence 962 10 0 023567889999999999998777655 9999999
Q ss_pred EEEEEcCCCeeEEEeecCc---eEEEEecCCCEEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 002495 745 IRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASV 820 (915)
Q Consensus 745 I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~ 820 (915)
..+||+++++.+..+.++. +.++-+|.-..+++++.|.+.++||.+.. ..+..|.+|.+.|+++.|.-+ ..++++
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-Cceeec
Confidence 9999999999999988764 44566777778888888999999999965 567789999999999999874 567889
Q ss_pred eCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-----EcccCCCeEEEE
Q 002495 821 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-----LTAHEGLIAALA 894 (915)
Q Consensus 821 s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~-----~~~h~~~V~~l~ 894 (915)
++| +|+|||+++.. ..+..+.. ...+..++++..++.|+.-..++.|++||++..++.. ..+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 999 99999998754 33334333 6678889999988888888888899999999887653 448999999999
Q ss_pred EeCCCC--EEEEEecCCcEEEcC
Q 002495 895 VSTETG--YVASASHDKFVKLWK 915 (915)
Q Consensus 895 ~spdg~--~Lasgs~Dg~I~IWd 915 (915)
|..+.. -|++|+.|..+.-|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 976543 478999999998885
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=252.27 Aligned_cols=266 Identities=23% Similarity=0.436 Sum_probs=227.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEecc-
Q 002495 640 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG- 718 (915)
Q Consensus 640 ~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~- 718 (915)
=+.|+ ....||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||+.+ .+.++.+.+
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGS 258 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh-ccccccccCC
Confidence 35677 344677765 55899999999887777777789999999999999999999999999999998 566777777
Q ss_pred CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-ee---cCceEEEEecCCCEEEEEEcCCeEEEEECCCceE
Q 002495 719 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 794 (915)
Q Consensus 719 h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~-~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~ 794 (915)
|...|-+++|. ..++.+|+.|+.|.++|++....... +. ..+..+.|++++..++.++.|+.|.|||.....+
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999998 44777999999999999998765443 33 3456688999999999999999999999999999
Q ss_pred EEEecCCCCCeEEEEEcCC-CCEEEEEe--CC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC--C
Q 002495 795 RLSLQGHTKPIDSVCWDPS-GELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY--Q 868 (915)
Q Consensus 795 ~~~l~~h~~~V~si~~spd-g~~Las~s--~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~d--g 868 (915)
+..+..|...|..++|+|- ..+||+|+ .| .|++||..++. .+..+.. +..|.++.|++..+.|+++... +
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~---~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA---RIDSVDT-GSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---Eeccccc-CCceeeEEEcCCCCEEEEecCCCCC
Confidence 9999999999999999994 45788765 34 89999999874 3333332 7889999999999888887654 5
Q ss_pred eEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 869 SLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 869 ~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.|.||+..+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 8999999998777 7889999999999999999999999999999996
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=263.46 Aligned_cols=277 Identities=20% Similarity=0.332 Sum_probs=233.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEE--CCCcEEEEECCC------------CceeeEeccCCCcEEEEEECCCCCEEEEEeCCC
Q 002495 634 STSKVICCHFSSDGKLLATGG--HDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 699 (915)
Q Consensus 634 H~~~V~~lafspdg~~Lasgs--~Dg~V~vwd~~t------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 699 (915)
+...|.+|+.+|||..+|||+ .||.++||+.+. .+.+.+...|.+.|+|+.|++||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345699999999999999999 999999998642 234556678999999999999999999999999
Q ss_pred eEEEEECCC------C-----------CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC
Q 002495 700 TVRVWDADN------P-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 762 (915)
Q Consensus 700 ~I~iWdl~~------~-----------~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~ 762 (915)
.|.||+... . -+++..+.+|...|.+++|+|++ .++++++.|++|.|||.++.+++++++++
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeeecc
Confidence 999999872 1 12577888999999999999975 57779999999999999999999888765
Q ss_pred ---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC------CCeEEEEEcCCCCEEEEEeC----C-eEEEE
Q 002495 763 ---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSE----D-SVRVW 828 (915)
Q Consensus 763 ---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~------~~V~si~~spdg~~Las~s~----d-~I~iw 828 (915)
+..+.|+|-|.+|++-+.|++|+||++.+..+.+.+.++. ..+..+.|+|||.+|++... . ++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 5678999999999999999999999988887777776543 34788999999999998642 1 67887
Q ss_pred ECCCCCCcceEEEeccCCCceEEEEEeCC-------------CC----EEEEEEcCCeEEEEECCCCcEE--EEcccCCC
Q 002495 829 TVGSGSEGECVHELSCNGNKFHSCVFHPT-------------YP----SLLVIGCYQSLELWNMSENKTM--TLTAHEGL 889 (915)
Q Consensus 829 dl~s~~~~~~i~~~~~~~~~i~~i~~spd-------------g~----~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~ 889 (915)
+-.+ .++-..+-+|..++.++.|+|. .. .+++|+.|++|.||.....+.+ ...-....
T Consensus 251 eR~t---Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 251 ERGT---WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred ecCC---ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 7643 3667788899999999999882 11 5788999999999999777766 23345678
Q ss_pred eEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 890 IAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 890 V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
|.+++|+|||..|+.||.||+|.++
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEE
Confidence 9999999999999999999999875
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-24 Score=209.29 Aligned_cols=287 Identities=21% Similarity=0.306 Sum_probs=235.0
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---------------ceeeEeccCCCcEEEEEECCC
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---------------KSKTNLEEHSSLITDVRFSPS 688 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~---------------~~~~~l~~h~~~V~~l~fspd 688 (915)
.|..+..++ .+..|.+++|+|.|.+.|+|+..++++|.-.... ...+.-+.|.+.|.|.+|+|+
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 455555554 4668999999999999999999999998753211 112234578999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCc----eEEEeccCCCCeEEEEEcCC---CCeEEEEEe-CCCcEEEEEcCCCeeEEEee
Q 002495 689 MPRLATSSFDKTVRVWDADNPGY----SLRTFMGHSASVMSLDFHPN---KDDLICSCD-GDGEIRYWSINNGSCTRVFK 760 (915)
Q Consensus 689 g~~Lasgs~Dg~I~iWdl~~~~~----~~~~~~~h~~~V~sl~fsp~---~~~ll~s~s-~Dg~I~iwdl~~~~~~~~~~ 760 (915)
|.+|++|+.|++|++.-++.... .-..+.-|.+.|..++|..+ +..++++++ .|..|++-|..++.....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999999999987764221 22456679999999999654 445666654 57889999999999888887
Q ss_pred cCceEE-E-EecCCCEEEEEEcCCeEEEEECCCceEEEEecC--C-----CCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002495 761 GGTAQM-R-FQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-----TKPIDSVCWDPSGELLASVSED-SVRVWTV 830 (915)
Q Consensus 761 ~~~~~v-~-~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h-----~~~V~si~~spdg~~Las~s~d-~I~iwdl 830 (915)
++...+ + ++..+-.++.++.|.+|++||++-..++.++.. | ...|.+++..|.|++|++|..| ...+||+
T Consensus 181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 765443 2 445556777788899999999999998887753 2 2569999999999999999999 9999999
Q ss_pred CCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-----cEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002495 831 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN-----KTMTLTAHEGLIAALAVSTETGYVASA 905 (915)
Q Consensus 831 ~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~-----~~~~~~~h~~~V~~l~~spdg~~Lasg 905 (915)
+.+ ..+..+..|...|.++.|+|...|+++++.|..|++-|+... ..+.+..|.+.+..+.|+|..--+++.
T Consensus 261 rg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 261 RGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred eCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 877 788899999999999999999999999999999999998653 234667899999999999999889999
Q ss_pred ecCCcEEEc
Q 002495 906 SHDKFVKLW 914 (915)
Q Consensus 906 s~Dg~I~IW 914 (915)
+.|.++.+|
T Consensus 338 sadkt~tlw 346 (350)
T KOG0641|consen 338 SADKTATLW 346 (350)
T ss_pred cCcceEEEe
Confidence 999999999
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=226.81 Aligned_cols=248 Identities=21% Similarity=0.337 Sum_probs=206.6
Q ss_pred cceeeeEeecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECC-CCceeeEeccCCCcEEEEEECC-CCCEEEEEeCCCe
Q 002495 624 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKT 700 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~V~vwd~~-t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~ 700 (915)
.+.+...+. -.+.+..|+|++.. ..+++++.||+++|||+. ..+++..++.|...|.++.|++ +...++++|.|++
T Consensus 50 gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~T 128 (311)
T KOG0277|consen 50 GIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGT 128 (311)
T ss_pred CeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCc
Confidence 334444444 35679999999854 688899999999999965 5678899999999999999998 5557888899999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCC-EEE
Q 002495 701 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG-RYL 776 (915)
Q Consensus 701 I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~-~ll 776 (915)
|++|+... ...+.++.+|...|+...|+|....++++++.|+++++||++.......++. .+.++.|+..+. .++
T Consensus 129 iKLW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 129 IKLWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred eEeecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEE
Confidence 99999987 6778999999999999999999999999999999999999987543333443 456677877665 455
Q ss_pred EEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002495 777 AAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853 (915)
Q Consensus 777 ~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 853 (915)
+++.|+.|++||++.. .++.++.+|.-.|+.|+|+|... +|++++.| +++|||..... .++.....|..-+..+.
T Consensus 208 Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~D 285 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLD 285 (311)
T ss_pred ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEeccc
Confidence 6677999999999985 67888999999999999999654 89999999 99999997543 55666677888888888
Q ss_pred EeC-CCCEEEEEEcCCeEEEEEC
Q 002495 854 FHP-TYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 854 ~sp-dg~~l~s~s~dg~I~iwd~ 875 (915)
|++ +..+++.++.|+.++||+-
T Consensus 286 ws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 286 WSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccCceeeecccccceeeecc
Confidence 887 5678999999999999984
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=257.52 Aligned_cols=247 Identities=25% Similarity=0.440 Sum_probs=216.1
Q ss_pred CccceeeeE-eecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCe
Q 002495 622 GFSFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 700 (915)
Q Consensus 622 ~~~~~~~~~-l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~ 700 (915)
......+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.+...+.+|...|.++...+ .++++|+.|.+
T Consensus 235 ~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~t 312 (537)
T KOG0274|consen 235 LNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNT 312 (537)
T ss_pred cccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCce
Confidence 334455666 999999999999998788999999999999999999999999999999999998754 47888999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEE-EecCC-CEEEEE
Q 002495 701 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR-FQPHL-GRYLAA 778 (915)
Q Consensus 701 I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~-~sp~~-~~ll~~ 778 (915)
|+||++.+ +.++.++.+|.+.|.++.++ ..++++|+.|++|++||+.+++|++++.++...+. +..+. ..++.+
T Consensus 313 VkVW~v~n-~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sg 388 (537)
T KOG0274|consen 313 VKVWDVTN-GACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSG 388 (537)
T ss_pred EEEEeccC-cceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEee
Confidence 99999997 88899999999999999998 34677999999999999999999999988764433 24444 899999
Q ss_pred EcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEecc-CCCceEEEEEe
Q 002495 779 AAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFH 855 (915)
Q Consensus 779 ~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~-~~~~i~~i~~s 855 (915)
+.|+.|++||+++. +|+.++.+|..-|.++.+. +++|++++.| .|++||..++ .+++.+.+ +...|..+.+.
T Consensus 389 s~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 389 SLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred eeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccccccEEEeecccC---ceeeeeccCCcccEEEeecC
Confidence 99999999999999 9999999999999776654 7899999999 9999999877 67777777 55777777765
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEE
Q 002495 856 PTYPSLLVIGCYQSLELWNMSENKTM 881 (915)
Q Consensus 856 pdg~~l~s~s~dg~I~iwd~~~~~~~ 881 (915)
...+++++.|+.+++||+++++..
T Consensus 464 --~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 464 --KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred --cceEEEEecCCeeEEEecccCchh
Confidence 567999999999999999999877
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=231.61 Aligned_cols=257 Identities=21% Similarity=0.341 Sum_probs=216.4
Q ss_pred CCCCcccccccCccceeeeEeecCCCCeEEEEEcCCC---CEEEEEECCCcEEEEECCCCce----eeEeccCCCcEEEE
Q 002495 611 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDV 683 (915)
Q Consensus 611 ~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg---~~Lasgs~Dg~V~vwd~~t~~~----~~~l~~h~~~V~~l 683 (915)
|...|+|+. ..+....+.+|+++|.+++|.... ..|++++.|.++++|.++.++. +....+|...|-+|
T Consensus 124 Dg~~riWd~----~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV 199 (423)
T KOG0313|consen 124 DGTSRIWDL----KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV 199 (423)
T ss_pred CCeeEEEec----CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE
Confidence 344455554 456888999999999988885433 3699999999999999886543 33445999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCC------------------------CCceEEEeccCCCCeEEEEEcCCCCeEEEEE
Q 002495 684 RFSPSMPRLATSSFDKTVRVWDADN------------------------PGYSLRTFMGHSASVMSLDFHPNKDDLICSC 739 (915)
Q Consensus 684 ~fspdg~~Lasgs~Dg~I~iWdl~~------------------------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~ 739 (915)
+..+++.++++|+.|.+|.||+..+ .+.++.++.||..+|.++.|++ ...++++
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~ 277 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSV 277 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEee
Confidence 9999999999999999999999321 0234678889999999999998 3467799
Q ss_pred eCCCcEEEEEcCCCeeEEEeec--CceEEEEecCCCEEEEEEcCCeEEEEECCCc---eEEEEecCCCCCeEEEEEcCCC
Q 002495 740 DGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSG 814 (915)
Q Consensus 740 s~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~---~~~~~l~~h~~~V~si~~spdg 814 (915)
+.|.+|+.||++++.++..+.+ ...++.+++....+++++.|..|++||.+++ .....+.+|...|.++.|+|..
T Consensus 278 SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~ 357 (423)
T KOG0313|consen 278 SWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN 357 (423)
T ss_pred cccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC
Confidence 9999999999999998887765 4578889999999999999999999999986 4567889999999999999966
Q ss_pred C-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002495 815 E-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 815 ~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~ 876 (915)
. .|++++.| ++++||+|+.. ..++.+.+|...|.++.|.. +..|++||.|..|+|+...
T Consensus 358 ~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 358 EFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 5 78889999 99999999763 47889999999999999974 5579999999999999643
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=252.63 Aligned_cols=273 Identities=22% Similarity=0.379 Sum_probs=233.2
Q ss_pred EEEEc-CCCCEEEEEECCCcEEEEECCCCc------eeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-c
Q 002495 640 CCHFS-SDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-Y 711 (915)
Q Consensus 640 ~lafs-pdg~~Lasgs~Dg~V~vwd~~t~~------~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~-~ 711 (915)
.+..+ |.+++|+|||.||.|++|++.... ....++.|.++|.++....+++.|+++|.|-+|++|+..... .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 33444 356789999999999999986322 366788999999999999999999999999999999998744 7
Q ss_pred eEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eEEEe------------ecCceEEEEecCCCEEEE
Q 002495 712 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVF------------KGGTAQMRFQPHLGRYLA 777 (915)
Q Consensus 712 ~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~--~~~~~------------~~~~~~v~~sp~~~~ll~ 777 (915)
++.++..|.+.|.||++......++|+|+-|+.|++||++++. .+..+ +..+.+++..+.+..++.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 7889999999999999955557799999999999999999873 33332 124566777888878888
Q ss_pred EEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC
Q 002495 778 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 856 (915)
Q Consensus 778 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 856 (915)
|+.++.+++||.++.+.+..+.+|...|.++..++||..+++++.| +|++||+... +|+.++..|...++++..+|
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCC
Confidence 8999999999999999999999999999999999999999999999 9999999655 89999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-cEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 857 TYPSLLVIGCYQSLELWNMSEN-KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 857 dg~~l~s~s~dg~I~iwd~~~~-~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+-.++++|+.|+.|..=|+++. ++..+...+.+|..+..+.+..-+-++..|+.|+-|.
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999999999984 4446667777888888876555556777899998884
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=224.91 Aligned_cols=263 Identities=18% Similarity=0.307 Sum_probs=219.9
Q ss_pred ccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCC--EEEEEeCCCe
Q 002495 623 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKT 700 (915)
Q Consensus 623 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~ 700 (915)
+++.....+.+|.+.|+|++.+ +.++|+|+.|-+|+|||+.+.+.+..+-.|.+.|+++.|.++-. .|++|+.||.
T Consensus 31 ~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 4777888999999999999996 88999999999999999999999999999999999999999765 8999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--ecCceEEEEecCCCEEEEE
Q 002495 701 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAA 778 (915)
Q Consensus 701 I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~ 778 (915)
|.+|++.. -.++.++++|.+.|+.|+++|.++ |.++.+.|+.+++||+-+|+.-... +.....+.|+|.+.+|+++
T Consensus 109 i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 109 IIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS 186 (362)
T ss_pred EEEEEcCC-eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE
Confidence 99999997 688999999999999999999976 5668889999999999998765544 4455669999998888776
Q ss_pred EcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE--e
Q 002495 779 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF--H 855 (915)
Q Consensus 779 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~--s 855 (915)
.. +.|-||.+++......+.. ...+.|+.|.. +..|++|.++ .|++||..+. .+...+..|..+|..+.+ .
T Consensus 187 ~~-~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 187 GR-NKIDIYQLDNASVFREIEN-PKRILCATFLD-GSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYTN 260 (362)
T ss_pred ec-cEEEEEecccHhHhhhhhc-cccceeeeecC-CceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEec
Confidence 65 4678888887766555542 35677888875 5667777777 9999999764 788999999999999884 5
Q ss_pred CCCCEEEEEEcCCeEEEEECCCC-----cEEEEcccCCCeEEEEE
Q 002495 856 PTYPSLLVIGCYQSLELWNMSEN-----KTMTLTAHEGLIAALAV 895 (915)
Q Consensus 856 pdg~~l~s~s~dg~I~iwd~~~~-----~~~~~~~h~~~V~~l~~ 895 (915)
|++.+|++++.||.|+|||++.. +.+........++|+..
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred CCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeee
Confidence 67889999999999999999876 33333444666777655
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=237.54 Aligned_cols=236 Identities=22% Similarity=0.292 Sum_probs=203.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCceE
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSL 713 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~iWdl~~~~~~~ 713 (915)
.+.|++++|..||++||+|...|.|+|||+++...++.+.+|..+|..+.|+| ++..|++|++|+.+++||+.+ ....
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQ 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEE
Confidence 44699999999999999999999999999877778889999999999999999 556788889999999999998 5557
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeEEEeec--CceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002495 714 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAE 790 (915)
Q Consensus 714 ~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~-~~~~~~~~--~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 790 (915)
..+.+|++.|.|.+|+|-.+++++||+.||+|++||++.. ..+..+.. ++..+.+.|.+..+++ +..+.|+|||+.
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ias-AgGn~vkVWDl~ 225 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIAS-AGGNSVKVWDLT 225 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEE-cCCCeEEEEEec
Confidence 7899999999999999999999999999999999999987 56666653 5678888888665554 556789999999
Q ss_pred Cc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002495 791 TQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 868 (915)
Q Consensus 791 t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg 868 (915)
+| +.+..+..|...|+|+++..++..|++++-| .|++||+.+- +.++.+.- .++|.+|+.+|++..+++|..+|
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeeec-ccceeeEEecCCCceEEEecccc
Confidence 66 5555555699999999999999999999999 9999997544 66666654 67899999999999999999999
Q ss_pred eEEEEECC
Q 002495 869 SLELWNMS 876 (915)
Q Consensus 869 ~I~iwd~~ 876 (915)
.+.+-+..
T Consensus 302 lv~~rr~~ 309 (487)
T KOG0310|consen 302 LVSIRRRE 309 (487)
T ss_pred eeeeehhh
Confidence 87776443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=257.71 Aligned_cols=250 Identities=23% Similarity=0.395 Sum_probs=215.8
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC------------------CCceeeEeccCCCcEEEEEECC
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD------------------TLKSKTNLEEHSSLITDVRFSP 687 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~------------------t~~~~~~l~~h~~~V~~l~fsp 687 (915)
+.+.+...|.+.|+|+.|++||++||+|++|+.|.||+.. ..+.+..+.+|...|.+++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 4677888999999999999999999999999999999865 2346788999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec------
Q 002495 688 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------ 761 (915)
Q Consensus 688 dg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~------ 761 (915)
++.+||+++.|++|.||+..+ .+.++++.+|.+.|..+.|.|-|. +||+-+.|++|+||++.+..+.+.+..
T Consensus 140 ~~~~lvS~s~DnsViiwn~~t-F~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKT-FELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CccEEEEecccceEEEEcccc-ceeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 999999999999999999998 488999999999999999999976 567999999999999877666665543
Q ss_pred ---CceEEEEecCCCEEEEEEc----CCeEEEEECCCceEEEEecCCCCCeEEEEEcCC-------------CC----EE
Q 002495 762 ---GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-------------GE----LL 817 (915)
Q Consensus 762 ---~~~~v~~sp~~~~ll~~~~----dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd-------------g~----~L 817 (915)
....+.|+|+|.+|++... ..++.|.+-.+.++-..+.+|..++.+++|+|. .+ .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 2355789999999988755 348999999999999999999999999999981 11 67
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002495 818 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 879 (915)
Q Consensus 818 as~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~ 879 (915)
|+|+.| +|.||.....+..-.++.+. ...|..++|+|||..|++++.||+|.++.+.+.+
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~lf--~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHNLF--NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhhhh--cCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 888999 99999986655444444443 5679999999999999999999999999997654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=255.62 Aligned_cols=279 Identities=18% Similarity=0.270 Sum_probs=209.9
Q ss_pred CCCCCCceEEEEcCCCceecCC---CCeeEeCCCchhhhhhhh---------hcccCC------CCCceeeecccCCCCC
Q 002495 548 SGTTSKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDR---------LVEDGS------LDDNVESFLSHDDTDP 609 (915)
Q Consensus 548 ~~~~~~~~~~fs~dg~~~~~~~---~~~lwd~~~~~~~~~~~~---------~~~~gs------~d~~v~~~~~~~~~~~ 609 (915)
......+.|.||+||+|+++++ .++||.+...+. ..++. +.+.+. ..+.+......-....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 3445679999999999999955 558999987443 11111 000000 0001111111111111
Q ss_pred CCCCCcccccccCccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECC-C
Q 002495 610 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-S 688 (915)
Q Consensus 610 ~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fsp-d 688 (915)
.......-+....|.-++++.+.||++.|.+|.||.++ +|++++.|++|+||++...+++++|. |.+.|+||+|+| |
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 11112333334456778899999999999999999876 99999999999999999999999984 999999999999 8
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--------
Q 002495 689 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-------- 760 (915)
Q Consensus 689 g~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~-------- 760 (915)
.+||++||.||.||||++.. ..+..+.....-|++++|.|+|...| .|+.+|.+++|+.+..+....+.
T Consensus 422 DryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdGk~av-IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISD--KKVVDWNDLRDLITAVCYSPDGKGAV-IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CCcEeecccccceEEeecCc--CeeEeehhhhhhheeEEeccCCceEE-EEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 88999999999999999985 44555556668999999999977555 89999999999999877654431
Q ss_pred --c-CceEEEEecCC-CEEEEEEcCCeEEEEECCCceEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002495 761 --G-GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGS 832 (915)
Q Consensus 761 --~-~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~--~V~si~~spdg~~Las~s~d-~I~iwdl~s 832 (915)
+ .++.+.|.|.. ..+++++.|..|+|||.++..++..|+++.. .-....|+.||++|+++++| .|+||++..
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 1 36677777655 4699999999999999999999999987543 33567899999999999999 999999843
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-26 Score=248.48 Aligned_cols=252 Identities=21% Similarity=0.308 Sum_probs=213.2
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECC---CCCEEEEEeCCCeEEEEEC
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP---SMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 630 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fsp---dg~~Lasgs~Dg~I~iWdl 706 (915)
...+....|+||+.+|+|.+||+|..-|+|+||++...+....++.|...|.|+.|+. ..++||+++.|..|.|||+
T Consensus 454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv 533 (1080)
T KOG1408|consen 454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDV 533 (1080)
T ss_pred hhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEec
Confidence 3445567899999999999999999999999999999999999999999999999987 4568999999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEE
Q 002495 707 DNPGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 785 (915)
Q Consensus 707 ~~~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~ 785 (915)
......+.++.+|...|++|.|.-.| +.-+++|+.|..|.+--.........|..+
T Consensus 534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~----------------------- 590 (1080)
T KOG1408|consen 534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH----------------------- 590 (1080)
T ss_pred ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc-----------------------
Confidence 98777888999999999999998765 334559999988765332211111111100
Q ss_pred EEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002495 786 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 864 (915)
Q Consensus 786 i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~ 864 (915)
+ -......+..++..|..+++++++.| .|+|||+.+++..+.++.-..|++....+...|.|.||++.
T Consensus 591 -----t------~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atS 659 (1080)
T KOG1408|consen 591 -----T------QTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATS 659 (1080)
T ss_pred -----c------cccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEe
Confidence 0 01123457889999999999999999 99999999997777777777788889999999999999999
Q ss_pred EcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 865 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 865 s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+.|++|.|||+.+++++ .+.+|...|+.+.|.+|.++|++.+.||+|.||+
T Consensus 660 csdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 660 CSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred ecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 99999999999999999 8999999999999999999999999999999996
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=220.14 Aligned_cols=238 Identities=23% Similarity=0.387 Sum_probs=208.5
Q ss_pred eEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceE--EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEE
Q 002495 671 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 748 (915)
Q Consensus 671 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~--~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iw 748 (915)
+.+.+|...|.+|+|+.+|.+|++|+.|++++||+++.. ... ....+|.+.|..++|+|....+|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 556789999999999999999999999999999999863 222 34568999999999999999999999999999999
Q ss_pred EcCCCeeEEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEE-EEeCCeE
Q 002495 749 SINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA-SVSEDSV 825 (915)
Q Consensus 749 dl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~La-s~s~d~I 825 (915)
|++.++++.... ++...+.|+|++++++++..|..|.++|.++.+.+.... ....++.++|+.++.+++ +.+.+.|
T Consensus 93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 999999988775 455678999999999999999999999999988776655 445678889987777554 4455688
Q ss_pred EEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEE
Q 002495 826 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVAS 904 (915)
Q Consensus 826 ~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Las 904 (915)
.|.... ..+.+..+..|.....+|.|+|+|++|++|+.|-.+.+||+.+.-++ .+..++-+|+.|.|+-||++||+
T Consensus 172 ~ILsyp---sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 172 EILSYP---SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS 248 (313)
T ss_pred EEEecc---ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeec
Confidence 888875 34788899999999999999999999999999999999999998877 67789999999999999999999
Q ss_pred EecCCcEEE
Q 002495 905 ASHDKFVKL 913 (915)
Q Consensus 905 gs~Dg~I~I 913 (915)
|++|..|-|
T Consensus 249 aSEDh~IDI 257 (313)
T KOG1407|consen 249 ASEDHFIDI 257 (313)
T ss_pred cCccceEEe
Confidence 999998865
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=224.07 Aligned_cols=291 Identities=15% Similarity=0.240 Sum_probs=227.8
Q ss_pred ceEEEEcCCCceecC---CCCeeEeCCCchhhhhhhhhcccCCCCCceeeecccCCCCCCCCCCcccccccCccceeeeE
Q 002495 554 PLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 630 (915)
Q Consensus 554 ~~~~fs~dg~~~~~~---~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 630 (915)
..-.|++||...+++ .+++|+|++..--+....++. .. +.. ..-..+++
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~-------------~~-~~q--------------a~hPvIRT 167 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMI-------------SG-DTQ--------------ARHPVIRT 167 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhc-------------cC-Ccc--------------cCCceEee
Confidence 356789999987774 455887775432211111111 10 000 02346788
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEec--cCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 002495 631 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 631 l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~ 708 (915)
|-.|.+.|+++.|+|...+|++|+.|++|++||+.+...++.++ ....+|.+|.|+|.|.+|++|..-.++++||+++
T Consensus 168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence 99999999999999999999999999999999998654444443 3567899999999999999999999999999998
Q ss_pred CCceEEEe---ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec-----CceEEEEecCCCEEEEEEc
Q 002495 709 PGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 709 ~~~~~~~~---~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~ll~~~~ 780 (915)
..+...- ..|++.|+++.+++.+. +.++++.||.|+|||--+++|++++.. .+.+..|..+++++++.+.
T Consensus 248 -~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 248 -YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred -eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 4443322 36899999999999876 556999999999999999999988853 3566779999999999999
Q ss_pred CCeEEEEECCCceEEEEecCCCC-----CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002495 781 ENVVSILDAETQACRLSLQGHTK-----PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853 (915)
Q Consensus 781 dg~I~i~D~~t~~~~~~l~~h~~-----~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 853 (915)
|..|++|.+.+++++.++.+... --+...|+....|++.-.+. .++-||.++...... .-.+|.+.+..+.
T Consensus 326 DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l--~slgHn~a~R~i~ 403 (430)
T KOG0640|consen 326 DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL--LSLGHNGAVRWIV 403 (430)
T ss_pred cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh--cccCCCCCceEEE
Confidence 99999999999999998876421 12345688888888887776 899999998754332 2346789999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECC
Q 002495 854 FHPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 854 ~spdg~~l~s~s~dg~I~iwd~~ 876 (915)
-+|.+..|++|+.|..+++|--+
T Consensus 404 HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 404 HSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eCCCCCceeeecccceeeeeeec
Confidence 99999999999999999999643
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=218.50 Aligned_cols=269 Identities=18% Similarity=0.256 Sum_probs=214.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceE
Q 002495 634 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 713 (915)
Q Consensus 634 H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~ 713 (915)
-.+.|.+|.|++.+..|+++++||++++||+........+ .|..+|.+++|.+ ...+++|+.||.|+++|+.+. ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCC--cc
Confidence 3678999999999999999999999999999877444444 5889999999987 568999999999999999973 34
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 002495 714 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 793 (915)
Q Consensus 714 ~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~ 793 (915)
..+..|...|.||.+++..+ .+++|++|++|++||.+...+...+.......+.+-.++.|++++.+..|.+||+++..
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 55667999999999998755 45599999999999999876676776666667778888999999999999999999875
Q ss_pred EEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-CCcceEEEeccCC---------CceEEEEEeCCCCE
Q 002495 794 CRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHELSCNG---------NKFHSCVFHPTYPS 860 (915)
Q Consensus 794 ~~~~l~--~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~-~~~~~i~~~~~~~---------~~i~~i~~spdg~~ 860 (915)
...... .-+-.++||++.|++.-+++++-+ .|.+=.+... ........+++|. .+|.+++|||-...
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 544322 233468999999988756666655 5554444332 1112233444442 35889999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEec
Q 002495 861 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH 907 (915)
Q Consensus 861 l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~ 907 (915)
|++|+.||.|.+||+.+.+.+ .+...+..|.+++|+.+|..||+|+.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999998887 66667788999999999999999873
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-25 Score=233.68 Aligned_cols=241 Identities=23% Similarity=0.421 Sum_probs=210.5
Q ss_pred ceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 002495 625 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 704 (915)
Q Consensus 625 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iW 704 (915)
...+.+|.+..+.|+++.|.++++++++++.|+.+++|+++......+|.+|.+.|+++.|......+++|+.|.+|++|
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 45778889999999999999999999999999999999999999999999999999999999887789999999999999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--cCceEEEEecCCCEEEEEEcCC
Q 002495 705 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAEN 782 (915)
Q Consensus 705 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg 782 (915)
|+.. .++.+++. ....+.+|+.. ...++++-.|++|++||+++..++.... +.++++..+.++..+++++.|.
T Consensus 289 Dl~k-~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd 363 (459)
T KOG0288|consen 289 DLQK-AYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD 363 (459)
T ss_pred hhhh-hheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC
Confidence 9997 67766655 34556667665 3356699999999999999999988876 4678899999999999999999
Q ss_pred eEEEEECCCceEEEEecCC----CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCC--ceEEEEEe
Q 002495 783 VVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN--KFHSCVFH 855 (915)
Q Consensus 783 ~I~i~D~~t~~~~~~l~~h----~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~--~i~~i~~s 855 (915)
++.++|+++...+..+... ...++.++|+|++.|+++|+.| .|+||++.++ ++...+..... .|++++|+
T Consensus 364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWN 440 (459)
T ss_pred ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEc
Confidence 9999999999888877642 2348889999999999999999 9999999887 55555544443 59999999
Q ss_pred CCCCEEEEEEcCCeEEEE
Q 002495 856 PTYPSLLVIGCYQSLELW 873 (915)
Q Consensus 856 pdg~~l~s~s~dg~I~iw 873 (915)
|.|..+++++.++.+.+|
T Consensus 441 ~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCchhhcccCCcceEec
Confidence 999999999999999999
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-24 Score=238.17 Aligned_cols=299 Identities=15% Similarity=0.247 Sum_probs=237.2
Q ss_pred cccccccCccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCE-EE
Q 002495 615 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LA 693 (915)
Q Consensus 615 ~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~-La 693 (915)
..+.+++..+-+.+.++.++.+.|+++.-+|-=..+|.|..+|+|.|++++.++.+.+|+..-+.|+.++|..||+. ++
T Consensus 182 G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~la 261 (910)
T KOG1539|consen 182 GRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLA 261 (910)
T ss_pred CcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEE
Confidence 34455555577899999999999999999998889999999999999999999999999877799999999999985 56
Q ss_pred EEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-------------------
Q 002495 694 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------------------- 754 (915)
Q Consensus 694 sgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~------------------- 754 (915)
+|+..|.+.+||++...........|.+.|..+.|.+.. .++++++.|+.+++|=.+++.
T Consensus 262 s~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~i 340 (910)
T KOG1539|consen 262 SGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCI 340 (910)
T ss_pred eccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhe
Confidence 666679999999997433333333565556666665542 344455555555544221000
Q ss_pred --------------------------------------------------------------------------------
Q 002495 755 -------------------------------------------------------------------------------- 754 (915)
Q Consensus 755 -------------------------------------------------------------------------------- 754 (915)
T Consensus 341 rfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~ 420 (910)
T KOG1539|consen 341 RFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKG 420 (910)
T ss_pred eeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecC
Confidence
Q ss_pred --eEE------------Ee--------ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe---cCCCCCeEEEE
Q 002495 755 --CTR------------VF--------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVC 809 (915)
Q Consensus 755 --~~~------------~~--------~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~~V~si~ 809 (915)
..+ ++ ...+.+++.++.|+..+.|.+.|.|.+|++.+|-....+ ..|..+|+.++
T Consensus 421 ~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla 500 (910)
T KOG1539|consen 421 KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLA 500 (910)
T ss_pred cceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEE
Confidence 000 00 012345777888889999999999999999999888888 47999999999
Q ss_pred EcCCCCEEEEEeCC-eEEEEECCCCC--------------------------------------CcceEEEeccCCCceE
Q 002495 810 WDPSGELLASVSED-SVRVWTVGSGS--------------------------------------EGECVHELSCNGNKFH 850 (915)
Q Consensus 810 ~spdg~~Las~s~d-~I~iwdl~s~~--------------------------------------~~~~i~~~~~~~~~i~ 850 (915)
.+..++.+++++.+ .+++||+.... ..+.++++.+|.+.|+
T Consensus 501 ~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nrit 580 (910)
T KOG1539|consen 501 VDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRIT 580 (910)
T ss_pred ecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccccee
Confidence 99988888888888 89999987542 0112345567999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC-CcEEEc
Q 002495 851 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 914 (915)
Q Consensus 851 ~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D-g~I~IW 914 (915)
+++|+|||++|++++.|++|++||+.++.++.....+.+++.+.|+|+|.+|||+..| .-|++|
T Consensus 581 d~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 581 DMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred eeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 9999999999999999999999999999999888889999999999999999999988 669998
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=229.52 Aligned_cols=274 Identities=20% Similarity=0.264 Sum_probs=220.6
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceee----E-------------e-ccCCCcEEEEEECCCC
Q 002495 628 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT----N-------------L-EEHSSLITDVRFSPSM 689 (915)
Q Consensus 628 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~----~-------------l-~~h~~~V~~l~fspdg 689 (915)
+..+..|.-.|+||++++|++++++++.|++|.-|++.+++... . - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 67788999999999999999999999999999999988776331 1 1 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEE
Q 002495 690 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQM 766 (915)
Q Consensus 690 ~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v 766 (915)
+|||+|+.|..|.||+.++ ...+..+.+|.+.|.+++|-.....++ +++.|+.|++|++.....+.++-++ +..+
T Consensus 215 kylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt~~ly-s~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGTSELY-SASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCcccee-eeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998 788889999999999999987655555 9999999999999988877776554 3444
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEe---
Q 002495 767 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL--- 842 (915)
Q Consensus 767 ~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~--- 842 (915)
........+-+++.|.++++|++. .+....+.+|.+.+.|++|.. ...+++|+++ .|.+|++.+.+..-....-
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred chhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 455555555566689999999994 445556788999999999986 4567788888 9999999765322111110
Q ss_pred ------ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc----EEEEcccCCCeEEEEEeCCCCEEEEE
Q 002495 843 ------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK----TMTLTAHEGLIAALAVSTETGYVASA 905 (915)
Q Consensus 843 ------~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~----~~~~~~h~~~V~~l~~spdg~~Lasg 905 (915)
..+..+|++++..|....+++|+.+|+|++|-+.++- ++.-..-.+.|++|+|+++|++|++|
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 0112389999999999999999999999999998882 33334477899999999999966655
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=239.01 Aligned_cols=274 Identities=18% Similarity=0.309 Sum_probs=228.6
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce--eeEeccCCCcEEE-EEECC-CCCEEEEEeCCC
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITD-VRFSP-SMPRLATSSFDK 699 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~--~~~l~~h~~~V~~-l~fsp-dg~~Lasgs~Dg 699 (915)
.++..+.+++|...|..|++.+.. .+++++.||+++||+-..... ...+.+|.+.|.+ ++|.+ ++-+|++|+.|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356678899999999999987655 899999999999999754333 3557788888888 88886 555799999999
Q ss_pred eEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEecCCCEEE
Q 002495 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYL 776 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll 776 (915)
+|.+|.+.. ..++.++++|...|.|++...++. +++|+.|.++++|-+. ++...+.+| +..+...|++ .++
T Consensus 82 ~i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 82 TIIVFKLSQ-AEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYV 155 (745)
T ss_pred eEEEEecCC-CCchhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEE
Confidence 999999997 789999999999999999877654 5699999999999764 444445554 4556677776 999
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEe
Q 002495 777 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 855 (915)
Q Consensus 777 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 855 (915)
+|+.|.+|++|.- ++++.+|.+|.+.|+.+++-+++.+ ++++.| .|++|++ ++ .++.+..+|.+.+.++...
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~f-lScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHF-LSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCCCe-EeecCCceEEEEec-cC---ceeeeeeccceEEEEEEec
Confidence 9999999999986 7888999999999999999987654 556666 9999999 34 7899999999999999988
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC-CeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 856 PTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 856 pdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~-~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
.++..|++++.|++++||+.. ++.....|.. .|+++++-++|. |++|+.||.||||
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 888899999999999999987 5555555555 899999988886 5678889999998
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=242.29 Aligned_cols=242 Identities=16% Similarity=0.256 Sum_probs=188.0
Q ss_pred EeecCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCC-------ceeeEeccCCCcEEEEEECCCC-CEEEEEeCCCe
Q 002495 630 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKT 700 (915)
Q Consensus 630 ~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~V~vwd~~t~-------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~ 700 (915)
.+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+. +.+..+.+|...|.+|+|+|++ .+|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999999754 3567889999999999999975 69999999999
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCc----eEEEEecCCCEEE
Q 002495 701 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMRFQPHLGRYL 776 (915)
Q Consensus 701 I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~----~~v~~sp~~~~ll 776 (915)
|+|||+++ +..+..+.+|...|.+++|+|++. +|++++.|+.|+|||+++++.+..+.++. ..+.|.++++.++
T Consensus 150 VrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 150 VNVWDVER-GKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred EEEEECCC-CeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 99999997 677888899999999999999876 56699999999999999999888776543 3567888888888
Q ss_pred EEEc----CCeEEEEECCCce-EEEEecCC-CCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCCCCcceEEEec-cCCC
Q 002495 777 AAAA----ENVVSILDAETQA-CRLSLQGH-TKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELS-CNGN 847 (915)
Q Consensus 777 ~~~~----dg~I~i~D~~t~~-~~~~l~~h-~~~V~si~~spdg~~Las~s~-d-~I~iwdl~s~~~~~~i~~~~-~~~~ 847 (915)
+++. |+.|++||+++.. ++..+..+ ...+....|++++.+|++++. | .|++||+.++.. +.... .+..
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~---~~~~~~~s~~ 304 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL---TFCSSYSSVE 304 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce---EEEeeccCCC
Confidence 7653 7899999998764 33333333 345666789999998888774 5 999999987642 22222 2344
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002495 848 KFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 878 (915)
Q Consensus 848 ~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~ 878 (915)
.+..++|.|... +-...-...++|.+...
T Consensus 305 ~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 305 PHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred CCcceEeccccc--ccccceeeeEEEEecCC
Confidence 567778877532 11111123466665544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=217.51 Aligned_cols=283 Identities=20% Similarity=0.294 Sum_probs=214.0
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce--eeEec--cCCCcEEEEEECCCCCEEEEEeC-CCeEE
Q 002495 628 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE--EHSSLITDVRFSPSMPRLATSSF-DKTVR 702 (915)
Q Consensus 628 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~--~~~l~--~h~~~V~~l~fspdg~~Lasgs~-Dg~I~ 702 (915)
+..|++|.+.|+|++|+.||++|||++.|++|+||+++.... .+.++ ...+--+.++|.||-+-+++... ..+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 457899999999999999999999999999999999985422 11121 12235678999999886665554 56799
Q ss_pred EEECCCC--C-ce--------EEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEE
Q 002495 703 VWDADNP--G-YS--------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRF 768 (915)
Q Consensus 703 iWdl~~~--~-~~--------~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~ 768 (915)
+|.+... + .. ...-+.|...|..+-.... ..+|++++.|..|.+|+++ |..+..+... ....++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9987531 1 11 1122235556666665544 5577799999999999999 8777776543 455789
Q ss_pred ecCCCEEEEEEcCCeEEEEECC---Cc-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC----CC
Q 002495 769 QPHLGRYLAAAAENVVSILDAE---TQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG----SE 835 (915)
Q Consensus 769 sp~~~~ll~~~~dg~I~i~D~~---t~-----~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~----~~ 835 (915)
+|+|..+++++..-.|.+|.+- .| ..+..+++|...|..++|+++...+++.+.| +++|||+.-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999763 22 4567889999999999999999999999999 9999998532 22
Q ss_pred cceEEEe----ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002495 836 GECVHEL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 909 (915)
Q Consensus 836 ~~~i~~~----~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~Dg 909 (915)
.+.+++. ...+..-..+..+|.+..|++. ....|++|..++++.. ....|...|.+|+|+++|+++++|+ |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 3333332 2223445588999999976664 4568999999998877 3457999999999999999999987 66
Q ss_pred cEEEc
Q 002495 910 FVKLW 914 (915)
Q Consensus 910 ~I~IW 914 (915)
.++++
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 77765
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-24 Score=216.08 Aligned_cols=257 Identities=21% Similarity=0.382 Sum_probs=209.4
Q ss_pred EEEEEECCCcEEEEECCC------------CceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEe
Q 002495 649 LLATGGHDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 716 (915)
Q Consensus 649 ~Lasgs~Dg~V~vwd~~t------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~ 716 (915)
.|++|+++..|.-+++.. ...+..+..|.+.|++|+.+ +.++|+|+.|.+|+|||+.. ...+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhcce
Confidence 467788877777776542 12355677899999999984 78999999999999999997 6667788
Q ss_pred ccCCCCeEEEEEcCCCC--eEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECCC
Q 002495 717 MGHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAET 791 (915)
Q Consensus 717 ~~h~~~V~sl~fsp~~~--~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t 791 (915)
..|.+.|+++.|.+.-. +|| +|+.||.|.+|+.....++..++. .++.++++|.+...++.+.|+.+++||+-+
T Consensus 80 l~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred eccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 88999999999998743 555 999999999999999988888765 467899999999999999999999999998
Q ss_pred ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 002495 792 QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLE 871 (915)
Q Consensus 792 ~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~ 871 (915)
++.-+.+.- ...-+.|.|+|.|.+++.+..+.|-||.+.+.. .+.++.. ...+.++.|- ++.++++|+.|+.|.
T Consensus 159 Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~---v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 159 GRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNAS---VFREIEN-PKRILCATFL-DGSELLVGGDNEWIS 232 (362)
T ss_pred Cccceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHh---Hhhhhhc-cccceeeeec-CCceEEEecCCceEE
Confidence 876555542 222344999999999999999999999987652 2222221 2345555554 667899999999999
Q ss_pred EEECCCCcEE-EEcccCCCeEEEEE--eCCCCEEEEEecCCcEEEcC
Q 002495 872 LWNMSENKTM-TLTAHEGLIAALAV--STETGYVASASHDKFVKLWK 915 (915)
Q Consensus 872 iwd~~~~~~~-~~~~h~~~V~~l~~--spdg~~Lasgs~Dg~I~IWd 915 (915)
+||..+..+. .+.+|...|.++.+ .|++.+|+|++.||.|+|||
T Consensus 233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 9999987776 78899999999985 46788999999999999997
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-24 Score=235.71 Aligned_cols=237 Identities=19% Similarity=0.310 Sum_probs=206.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEecc-CCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceE
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 713 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~ 713 (915)
.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|.++|++.....+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 77899999999999999999999999999999999999998 99999999998 6689999999999999999866555
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---ecCceEEEEecCCCEEEEEEc---CCeEEEE
Q 002495 714 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAA---ENVVSIL 787 (915)
Q Consensus 714 ~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll~~~~---dg~I~i~ 787 (915)
.++.+|...|..+.|++++. ++++|+.|+.|.|||.........+ .+.+..++|+|.-..+++.+. |++|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 66889999999999999976 5679999999999999666655554 456677899998866666443 8999999
Q ss_pred ECCCceEEEEecCCCCCeEEEEEcCCCCEEEEE-eCC--eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002495 788 DAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 864 (915)
Q Consensus 788 D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~-s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~ 864 (915)
|..+++.+..+. ....|++|.|++..+-|+++ +.. .|.||++.+. +.+..+.+|...|..++++|||..|+++
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 999999888766 45789999999988644443 333 8999999774 7888999999999999999999999999
Q ss_pred EcCCeEEEEECCCC
Q 002495 865 GCYQSLELWNMSEN 878 (915)
Q Consensus 865 s~dg~I~iwd~~~~ 878 (915)
+.|.++++|++-+.
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-25 Score=232.92 Aligned_cols=276 Identities=18% Similarity=0.296 Sum_probs=233.2
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC---CceeeEec--cCCCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 002495 632 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 632 ~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t---~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl 706 (915)
-.|...|.++.+|...++++||+ .|.|+|||+.. ...+..+. .....|.++.+.+||+.|++|++-.+|.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 36889999999999999999997 57899999873 22333333 34567999999999999999999999999999
Q ss_pred CCCCceEE-EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEEEcCC
Q 002495 707 DNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 782 (915)
Q Consensus 707 ~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg 782 (915)
..+...++ .+....-.++.++.+||.+ +.++|..||.|.|||+.+...++.|.+ +..|+.+++++.+|.+|+-|+
T Consensus 495 AapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 87554433 3333345678899999966 455888899999999999999999976 568899999999999999999
Q ss_pred eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEE
Q 002495 783 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 861 (915)
Q Consensus 783 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l 861 (915)
+|+.||+++++.+.... ....|.++.++|.+++|++|-+. .|.|...... ..+.+..|+..|.++.|.+.|+++
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCcee
Confidence 99999999987655433 45789999999999999999988 7877776543 345566788999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 862 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 862 ~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
++.+.|+.+..|...-|..+.-....+.|.++.++.|.+||+||+.|+...||
T Consensus 649 vStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred eecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 99999999999999999888777888999999999999999999999887776
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-23 Score=198.10 Aligned_cols=245 Identities=19% Similarity=0.346 Sum_probs=207.3
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-----eeeEeccCCCcEEEEEECCC----CCEEEEEeC-
Q 002495 628 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHSSLITDVRFSPS----MPRLATSSF- 697 (915)
Q Consensus 628 ~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~-----~~~~l~~h~~~V~~l~fspd----g~~Lasgs~- 697 (915)
.+.-+.|.+.|+|++|+|+|.+||+|+.|++|++.-+.... ....|.-|.+.|.+++|..+ +.+|++++.
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 34556799999999999999999999999999998665322 23456789999999999653 456777765
Q ss_pred CCeEEEEECCCCCceEEEeccCCCCeEEEE-EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec----------CceEE
Q 002495 698 DKTVRVWDADNPGYSLRTFMGHSASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----------GTAQM 766 (915)
Q Consensus 698 Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~-fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~----------~~~~v 766 (915)
|..|++-|... +..+..+.+|++.|.++- |+ +.+|++|+.|.+|++||++-..|+.++.. .+..+
T Consensus 162 dc~iy~tdc~~-g~~~~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 162 DCKIYITDCGR-GQGFHALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred cceEEEeecCC-CCcceeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 77888888887 788899999999998873 43 56888999999999999999999887632 35678
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-CcceEEEecc
Q 002495 767 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELSC 844 (915)
Q Consensus 767 ~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~-~~~~i~~~~~ 844 (915)
++.|.+..++++-.|....+||++.++.+..+..|...|+|+.|+|...|+++++.| .|++-|+...- ....+.....
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999 99999986431 1234455667
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002495 845 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 845 ~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~ 876 (915)
|...+..|.|+|..-.|++.+.|+++.+|-+.
T Consensus 318 hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 88899999999999999999999999999764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=221.29 Aligned_cols=262 Identities=13% Similarity=0.114 Sum_probs=204.6
Q ss_pred CCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEE-EEEeCCCeEEEEECCCCCceEEEeccCCCCeEE
Q 002495 647 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 725 (915)
Q Consensus 647 g~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~s 725 (915)
++++++++.|+.|++||+.+++.+..+..+.. +.+++|+++++.+ ++++.++.|++||+.+ +..+..+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccCCCC-ccE
Confidence 35788999999999999999998888876654 6789999999977 5667799999999987 555555554433 567
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec--CceEEEEecCCCEEEEEEcCC-eEEEEECCCceEEEEecCCC
Q 002495 726 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHT 802 (915)
Q Consensus 726 l~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~ 802 (915)
++|+|+++.++++++.|+.|++||+++.+.+..+.. ....+.|+|++..++++..++ .+.+||.++++....+.. .
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 899999887877777899999999999888877753 356789999999998888764 577889998877665442 3
Q ss_pred CCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceEEEeccC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 002495 803 KPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVI-GCYQSLEL 872 (915)
Q Consensus 803 ~~V~si~~spdg~~Las~s-~d-~I~iwdl~s~~~~~~i~~~~~~-------~~~i~~i~~spdg~~l~s~-s~dg~I~i 872 (915)
..+.+++|++++.+|++++ .+ .|++||+++++ ++..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK---VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce---eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 3467899999999876554 45 99999998763 33322211 1123568899999986654 45678999
Q ss_pred EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE-ecCCcEEEcC
Q 002495 873 WNMSENKTMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 915 (915)
Q Consensus 873 wd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-s~Dg~I~IWd 915 (915)
||+.+++.+....+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998887555566789999999999999886 4689999997
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=213.27 Aligned_cols=275 Identities=20% Similarity=0.304 Sum_probs=222.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEec
Q 002495 638 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 717 (915)
Q Consensus 638 V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~ 717 (915)
..||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+.. +.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998 55666655
Q ss_pred cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eEEEee-----cCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002495 718 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK-----GGTAQMRFQPHLGRYLAAAAENVVSILDAE 790 (915)
Q Consensus 718 ~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~--~~~~~~-----~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 790 (915)
...+|+.+.|+|...+.++++-.+..-.+.++...+ ++..-. ....+..|.+.++++++|...|.+.+||.+
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 678999999999877777666666656666665432 221111 112334588999999999999999999999
Q ss_pred CceEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC------CCcceEEEec--cCCCceEEEEEeCCCCE
Q 002495 791 TQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG------SEGECVHELS--CNGNKFHSCVFHPTYPS 860 (915)
Q Consensus 791 t~~~~~~l~~h~-~~V~si~~spdg~~Las~s~d-~I~iwdl~s~------~~~~~i~~~~--~~~~~i~~i~~spdg~~ 860 (915)
+.+++..++... ..|..|.|+-.|++|+.-+.| .||.|+++.- .+....+.+. .......+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999999888766 789999999999999999999 9999998632 1111112111 11334568899999999
Q ss_pred EEEEEcC-CeEEEEECCCCcEE-EEcccC-CCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 861 LLVIGCY-QSLELWNMSENKTM-TLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 861 l~s~s~d-g~I~iwd~~~~~~~-~~~~h~-~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+++++.. ..++||....|.++ .+.+.. .....+.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 9988754 48999999999988 455655 578899999998888887 788999993
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=207.67 Aligned_cols=231 Identities=21% Similarity=0.299 Sum_probs=208.1
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002495 672 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 751 (915)
Q Consensus 672 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~ 751 (915)
.+.+|+.+++-|.|+.+|.+|++|+.|.++.||-..+ ++.+-++.||.+.|+|++...+...++ +|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s~~li-TGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDSKHLI-TGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCcceee-eccccceeEEEEcC
Confidence 4678999999999999999999999999999998877 889999999999999999998876555 99999999999999
Q ss_pred CCeeEEEeec--CceEEEEecCCCEEEEEEcC-----CeEEEEECC-------CceEEEEecCCCCCeEEEEEcCCCCEE
Q 002495 752 NGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-----NVVSILDAE-------TQACRLSLQGHTKPIDSVCWDPSGELL 817 (915)
Q Consensus 752 ~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~d-----g~I~i~D~~-------t~~~~~~l~~h~~~V~si~~spdg~~L 817 (915)
+|+++..++. .+..+.|+..++.++++..+ +.|.++|++ ..+++..+..+.+.++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999998875 45778999999988887763 689999998 456788888899999999999999999
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEe
Q 002495 818 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 896 (915)
Q Consensus 818 as~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 896 (915)
++|.++ .|.+||++++. ..+.....|...|+.+.++++..++++++.|.+-++||+.+..++.....+.+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 999999 99999999874 455666778889999999999999999999999999999999999888889999999999
Q ss_pred CCCCEEEEEe
Q 002495 897 TETGYVASAS 906 (915)
Q Consensus 897 pdg~~Lasgs 906 (915)
|...+++.|+
T Consensus 241 P~~d~VilgG 250 (327)
T KOG0643|consen 241 PLLDHVILGG 250 (327)
T ss_pred cccceEEecC
Confidence 9888777765
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-24 Score=225.49 Aligned_cols=248 Identities=18% Similarity=0.372 Sum_probs=204.5
Q ss_pred eEeecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCC----------ceeeEeccCCCcEEEEEECCCC-CEEEEEe
Q 002495 629 NSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL----------KSKTNLEEHSSLITDVRFSPSM-PRLATSS 696 (915)
Q Consensus 629 ~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~V~vwd~~t~----------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs 696 (915)
...-.|.+.|+.+.+-|.. .++|+.+..+.|.|||..+. .+..++.+|.+.-++|+|++.. -+|++++
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence 3344699999999999955 67888889999999998632 1223788999988999999944 4899999
Q ss_pred CCCeEEEEECCCCCc------eEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEec
Q 002495 697 FDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP 770 (915)
Q Consensus 697 ~Dg~I~iWdl~~~~~------~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp 770 (915)
.|++|++||+..... ....+.+|...|..++|++....+|++++.|+.+.|||++++.
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~---------------- 261 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT---------------- 261 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC----------------
Confidence 999999999975332 3567889999999999999999999999999999999998531
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC-CCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc
Q 002495 771 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 848 (915)
Q Consensus 771 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd-g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 848 (915)
.++.....+|...|+|++|+|- +.+||+++.| +|++||+|+.. .+++.+.+|...
T Consensus 262 ---------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~de 318 (422)
T KOG0264|consen 262 ---------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDE 318 (422)
T ss_pred ---------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcc
Confidence 1222334679999999999995 4588889988 99999999764 589999999999
Q ss_pred eEEEEEeCCC-CEEEEEEcCCeEEEEECCCC--------------c-EEEEcccCCCeEEEEEeCCCCE-EEEEecCCcE
Q 002495 849 FHSCVFHPTY-PSLLVIGCYQSLELWNMSEN--------------K-TMTLTAHEGLIAALAVSTETGY-VASASHDKFV 911 (915)
Q Consensus 849 i~~i~~spdg-~~l~s~s~dg~I~iwd~~~~--------------~-~~~~~~h~~~V~~l~~spdg~~-Lasgs~Dg~I 911 (915)
|..+.|+|.. ..|++++.|+.+.|||+..- + ++.-.+|...|..+.|+|+..+ |+|+++|+.+
T Consensus 319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceE
Confidence 9999999975 56778889999999999642 1 1355689999999999998875 7788999999
Q ss_pred EEcC
Q 002495 912 KLWK 915 (915)
Q Consensus 912 ~IWd 915 (915)
.||+
T Consensus 399 qIW~ 402 (422)
T KOG0264|consen 399 QIWQ 402 (422)
T ss_pred EEee
Confidence 9996
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=207.34 Aligned_cols=246 Identities=20% Similarity=0.333 Sum_probs=205.0
Q ss_pred CceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEe-CCCcE
Q 002495 667 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEI 745 (915)
Q Consensus 667 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s-~Dg~I 745 (915)
.+..+.+......|++|.|+.+|.+|++++.|.+|+|||..+ +..++++..+...|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 445556666788999999999999999999999999999998 7888888888888999999776666664332 38899
Q ss_pred EEEEcCCCeeEEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002495 746 RYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 822 (915)
Q Consensus 746 ~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~ 822 (915)
|+.++.+.+.++.|.++ +..++.+|-+..+++++.|++|++||++..+|...+..-..+ .++|+|.|-++|++..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence 99999999999999886 467889999999999999999999999988887776654444 4699999999999998
Q ss_pred C-eEEEEECCCCCCc-ceEEEe-ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCe---EEEEE
Q 002495 823 D-SVRVWTVGSGSEG-ECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLI---AALAV 895 (915)
Q Consensus 823 d-~I~iwdl~s~~~~-~~i~~~-~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V---~~l~~ 895 (915)
. .|++||+++-... .....+ .........+.|+|||++|+.++..+.+++.|.-+|.++ .+..+...- ...+|
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 8 9999999986332 122222 244677899999999999999999999999999999877 455544322 57789
Q ss_pred eCCCCEEEEEecCCcEEEcC
Q 002495 896 STETGYVASASHDKFVKLWK 915 (915)
Q Consensus 896 spdg~~Lasgs~Dg~I~IWd 915 (915)
+||+++|++|+.||+|+||+
T Consensus 241 tPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCCCcEEEEecCCCcEEEEE
Confidence 99999999999999999996
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=234.01 Aligned_cols=228 Identities=16% Similarity=0.228 Sum_probs=176.2
Q ss_pred eeeeEeecCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCc--------eeeEeccCCCcEEEEEECCCCCE-EEEE
Q 002495 626 KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITDVRFSPSMPR-LATS 695 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~lafspd-g~~Lasgs~Dg~V~vwd~~t~~--------~~~~l~~h~~~V~~l~fspdg~~-Lasg 695 (915)
..+..+.+|.+.|.+|+|+|+ +.+||+|+.||+|+|||+.++. .+..+.+|...|.+|+|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 467789999999999999996 7899999999999999997532 34567899999999999998876 5789
Q ss_pred eCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCce---E-----EE
Q 002495 696 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---Q-----MR 767 (915)
Q Consensus 696 s~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~---~-----v~ 767 (915)
+.|++|+|||+++ +..+..+. |...|.+++|+++|. +|++++.|+.|+|||+++++.+..+.++.. . ..
T Consensus 145 S~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 145 GFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred eCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence 9999999999997 44555554 667899999999977 556888899999999999998888776432 1 12
Q ss_pred EecCCCEEEEEEcCC----eEEEEECCC-ceEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceE
Q 002495 768 FQPHLGRYLAAAAEN----VVSILDAET-QACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 839 (915)
Q Consensus 768 ~sp~~~~ll~~~~dg----~I~i~D~~t-~~~~~~l~--~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i 839 (915)
|+++++++++++.++ .|+|||++. .+++..+. .+...+......+++.++++|+.| .|++|++..+ ....+
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~-~~~~l 300 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG-SIRKV 300 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC-cEEee
Confidence 347888999988764 799999995 45555443 233334444445568889999888 9999999765 22333
Q ss_pred EEeccCCCceEEEEEeCCC
Q 002495 840 HELSCNGNKFHSCVFHPTY 858 (915)
Q Consensus 840 ~~~~~~~~~i~~i~~spdg 858 (915)
..+. +..++..++|.|+.
T Consensus 301 ~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 301 NEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred cccc-cCCCccceEEcccc
Confidence 3333 45677888998864
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=219.89 Aligned_cols=282 Identities=18% Similarity=0.270 Sum_probs=234.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC--CCceeeEeccCCCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCC
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNP 709 (915)
Q Consensus 633 ~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~--t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~iWdl~~~ 709 (915)
...+.|+||.|+|...+|++|+.|++++||.++ ....+..+.-...+|.+++|.|+|. .+++++....+++||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 346789999999999999999999999999887 4456677777788999999999999 8999999999999999873
Q ss_pred Cc-eEEEeccCC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--cCceEEEEecCCCEEEEEEcCCeEE
Q 002495 710 GY-SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVS 785 (915)
Q Consensus 710 ~~-~~~~~~~h~-~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~ 785 (915)
.. .+....++. ..+..+..++++. +|+..+..|.|.+....+++.+..++ +.+..++|+.++..+++++.+|.|+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 21 122333443 3566788889977 55688899999999999999888765 6678899999999999999999999
Q ss_pred EEECCCceEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC-eEEEEECCCC---CCcceEEEeccCCCceEEEEEeCCCCE
Q 002495 786 ILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED-SVRVWTVGSG---SEGECVHELSCNGNKFHSCVFHPTYPS 860 (915)
Q Consensus 786 i~D~~t~~~~~~l~~h~~-~V~si~~spdg~~Las~s~d-~I~iwdl~s~---~~~~~i~~~~~~~~~i~~i~~spdg~~ 860 (915)
+||++...+++.+....+ .-+++|.+.++.|||+|++. .|.|||..+. ...+.+..+..-...|+++.|+++...
T Consensus 370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 999999999998875322 34567888999999999998 8999996543 445677777777788999999999999
Q ss_pred EEEEEcC--CeEEEEECCCCcEEE-E---cccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 861 LLVIGCY--QSLELWNMSENKTMT-L---TAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 861 l~s~s~d--g~I~iwd~~~~~~~~-~---~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
|+.++.. +.+++-.+.+..+.. + ...-+.|+||+|+|.+.+||.|..+|.|++|+
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 8888764 589999999888772 2 33456899999999999999999999999996
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-23 Score=208.09 Aligned_cols=255 Identities=20% Similarity=0.343 Sum_probs=199.6
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC----CCceeeEeccCCCcEEEEEECC--CCCEEEEEeCCCeEEEEE
Q 002495 632 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 632 ~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~----t~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~iWd 705 (915)
.+|.+-|.|+.|...|+++|+|+.|.+|+|||.+ +..+....+.|.+.|..|.|.+ -|..+|+++.|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4789999999999999999999999999999964 4566777889999999999976 688999999999999997
Q ss_pred CCCC-----C---ceEEEeccCCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEE
Q 002495 706 ADNP-----G---YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 776 (915)
Q Consensus 706 l~~~-----~---~~~~~~~~h~~~V~sl~fsp~~-~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll 776 (915)
-... + ....++......|++|.|.|.. +..+++++.||+||||+.-.--.+...
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W----------------- 152 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW----------------- 152 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc-----------------
Confidence 6321 1 2345666778899999999963 346789999999999987653322211
Q ss_pred EEEcCCeEEEEECCCc--eEEEEecCCCCCeEEEEEcCC---CCEEEEEeCC------eEEEEECCCCC-CcceEEEecc
Q 002495 777 AAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS---GELLASVSED------SVRVWTVGSGS-EGECVHELSC 844 (915)
Q Consensus 777 ~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~si~~spd---g~~Las~s~d------~I~iwdl~s~~-~~~~i~~~~~ 844 (915)
.+... ..+.....+..+..|+.|++. ..+|+.|+++ .++||...... +...+.++..
T Consensus 153 -----------~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 153 -----------TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred -----------hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 11100 000011235567889999974 3488888887 79999887654 5667788889
Q ss_pred CCCceEEEEEeCC----CCEEEEEEcCCeEEEEECCCCc--------------------EE-EEcccCCCeEEEEEeCCC
Q 002495 845 NGNKFHSCVFHPT----YPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEGLIAALAVSTET 899 (915)
Q Consensus 845 ~~~~i~~i~~spd----g~~l~s~s~dg~I~iwd~~~~~--------------------~~-~~~~h~~~V~~l~~spdg 899 (915)
+..+|+.++|.|+ ...|++++.|| |+||.+.... .+ .+..|.+.|+.+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999995 45688999999 9999987411 12 466899999999999999
Q ss_pred CEEEEEecCCcEEEcC
Q 002495 900 GYVASASHDKFVKLWK 915 (915)
Q Consensus 900 ~~Lasgs~Dg~I~IWd 915 (915)
.+|++.|+||+||+|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=207.20 Aligned_cols=245 Identities=22% Similarity=0.310 Sum_probs=201.0
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---ceeeEeccCCCcEEEEEECC--CCCEEEEEeCCCeEEEEEC
Q 002495 632 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 632 ~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~---~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~iWdl 706 (915)
..|.+.|..+...-.|++|||++.|++|+||.+.+. +.+.+|.+|.++|..++|.. -|.+||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 478999999999999999999999999999998843 67889999999999999976 7999999999999999998
Q ss_pred CCCC-ceEEEeccCCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCC------eeEEEeecCceEEEEecC---C---
Q 002495 707 DNPG-YSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNG------SCTRVFKGGTAQMRFQPH---L--- 772 (915)
Q Consensus 707 ~~~~-~~~~~~~~h~~~V~sl~fsp~~-~~ll~s~s~Dg~I~iwdl~~~------~~~~~~~~~~~~v~~sp~---~--- 772 (915)
.++. .....+..|...|++|+|.|.+ ..+|++++.||.|.|.+++.. +....+..++++++|.|. +
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8742 1234566899999999999864 346678889999999998765 122234457788888876 3
Q ss_pred --------CEEEEEEcCCeEEEEECCCc--eEEEEecCCCCCeEEEEEcCCC----CEEEEEeCC-eEEEEECCCCCCcc
Q 002495 773 --------GRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVRVWTVGSGSEGE 837 (915)
Q Consensus 773 --------~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~si~~spdg----~~Las~s~d-~I~iwdl~s~~~~~ 837 (915)
.+|++++.|+.|+||+...+ +...++.+|.+.|+.++|.|.- .+|++++.| +|.||..+...+.-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 56999999999999998875 4445688999999999999954 389999999 99999987432323
Q ss_pred eEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002495 838 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 838 ~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~ 876 (915)
....++.-...+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 333333346679999999999999999999999999654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=229.16 Aligned_cols=239 Identities=21% Similarity=0.370 Sum_probs=209.4
Q ss_pred cceeeeEeecCCCCeEE-EEEcC-CCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeE
Q 002495 624 SFKEANSVRASTSKVIC-CHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 701 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~-lafsp-dg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 701 (915)
.+.+...+.+|.+.|.+ ++|-+ ++-+|++|+.|++|.+|......++.++++|...|+|+....++. |++||.|.++
T Consensus 46 ~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Ta 124 (745)
T KOG0301|consen 46 QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTA 124 (745)
T ss_pred ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccce
Confidence 55566778899999988 88885 555799999999999999999999999999999999999888876 9999999999
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEE--EecCCCEEEEEE
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR--FQPHLGRYLAAA 779 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~--~sp~~~~ll~~~ 779 (915)
+||.+. .+...+.+|...|+++.+.|++ .++||+.|.+|++|.- ++++++|.+|..+++ ..-++..|++++
T Consensus 125 kvW~~~---~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScs 197 (745)
T KOG0301|consen 125 KVWRIG---ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCS 197 (745)
T ss_pred EEecch---hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeec
Confidence 999875 4566699999999999999986 4569999999999976 788899998876654 223446899999
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002495 780 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 858 (915)
Q Consensus 780 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg 858 (915)
.||.|++|++ +++++.++.+|..-|.++....++..++++++| +++||+.. .|...+......|+++.+-++|
T Consensus 198 NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 198 NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNG 271 (745)
T ss_pred CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEEEecCccceEEEEEeeCC
Confidence 9999999999 899999999999999999988888899999999 99999975 6777777777789999988888
Q ss_pred CEEEEEEcCCeEEEEECCC
Q 002495 859 PSLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 859 ~~l~s~s~dg~I~iwd~~~ 877 (915)
. |++|+.||.||||....
T Consensus 272 D-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 272 D-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred C-EEEeccCceEEEEEecc
Confidence 7 89999999999998764
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=206.85 Aligned_cols=242 Identities=24% Similarity=0.417 Sum_probs=202.0
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--ceEEEeccCCCCeEEEEE-cCCCCeEEEEEeCCCcEEEEE
Q 002495 673 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDF-HPNKDDLICSCDGDGEIRYWS 749 (915)
Q Consensus 673 l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~--~~~~~~~~h~~~V~sl~f-sp~~~~ll~s~s~Dg~I~iwd 749 (915)
-..|.+.|.++...--|++||||+.|++|+|+.+++.+ ..+.++.||.++|+.++| +|.-..+|++|+.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 34789999999988899999999999999999999866 578899999999999999 566677999999999999999
Q ss_pred cCCCeeEEE-----eecCceEEEEecCC--CEEEEEEcCCeEEEEECCCc---eEEEEecCCCCCeEEEEEcCC---C--
Q 002495 750 INNGSCTRV-----FKGGTAQMRFQPHL--GRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPS---G-- 814 (915)
Q Consensus 750 l~~~~~~~~-----~~~~~~~v~~sp~~--~~ll~~~~dg~I~i~D~~t~---~~~~~l~~h~~~V~si~~spd---g-- 814 (915)
-+.+...+. +...+++++|.|.+ -.|+++++||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 988854332 34567888888875 46777888999999988754 334455679999999999995 4
Q ss_pred ---------CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC--
Q 002495 815 ---------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN-- 878 (915)
Q Consensus 815 ---------~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg----~~l~s~s~dg~I~iwd~~~~-- 878 (915)
+.|++|+.| .|+||+..++ ....-..+..|...|+.++|.|.- .+|++++.||+|.||..+..
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 569999999 9999999876 444555689999999999999964 57999999999999977632
Q ss_pred --cEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 879 --KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 879 --~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+...+......++.+.|+..|.+|+.++.|+.|.+|+
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1224455778899999999999999999999999996
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=220.87 Aligned_cols=359 Identities=16% Similarity=0.240 Sum_probs=252.1
Q ss_pred CCCCceEEEEcCCCceecCCCCeeEeCCCchhhhhhhhhcccCCCCCceeeecccCCCC---CCCCCCcccccccC-cc-
Q 002495 550 TTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTD---PRDAGGRGMDVSQG-FS- 624 (915)
Q Consensus 550 ~~~~~~~~fs~dg~~~~~~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~---~~~~~~~~~d~~~~-~~- 624 (915)
...+.+.+.+.+..++++...+.|+-.+.|+.+.+.... ...++...+.-++.. ..+....+|+.... ..
T Consensus 74 ~lp~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~-----~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~ 148 (910)
T KOG1539|consen 74 PLPDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLL-----HGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEEL 148 (910)
T ss_pred CCCCceEEEEecCceEEEecCcEEEEEEccceEEEEecc-----ccceEEEEeeecceEEEEEccCcEEEEEeccccccc
Confidence 344566677778887777666666555555433322211 113333333222211 12223334444332 11
Q ss_pred ceeeeEeecCCCCeEEEEEcCCC--CEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEE
Q 002495 625 FKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 702 (915)
Q Consensus 625 ~~~~~~l~~H~~~V~~lafspdg--~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~ 702 (915)
......++.-.+.|+++ ++|.. +.++.|+.+|.+.||++.+++.++++.++...|+++.=+|--..++.|..+|+|.
T Consensus 149 ~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vi 227 (910)
T KOG1539|consen 149 YLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVI 227 (910)
T ss_pred cccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEE
Confidence 11122233333337776 45543 6789999999999999999999999999999999999999888999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----cCceEEEEecCCCEEEEE
Q 002495 703 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAA 778 (915)
Q Consensus 703 iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~ll~~ 778 (915)
|++++. ++.+..|+-.-+.|++++|..||..++++++..|.+.+||++..+.+.... +.+....|.+....++++
T Consensus 228 ifNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 228 IFNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA 306 (910)
T ss_pred EEEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec
Confidence 999998 778888885569999999999999999999999999999999887765544 334445555555566666
Q ss_pred EcCCeEEEE--ECCCc----------------------------------------------------------------
Q 002495 779 AAENVVSIL--DAETQ---------------------------------------------------------------- 792 (915)
Q Consensus 779 ~~dg~I~i~--D~~t~---------------------------------------------------------------- 792 (915)
+.|+.+++| |..++
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~ 386 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN 386 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence 655544443 31110
Q ss_pred ----------------------------------------------eE-EEEec-----CCCCCeEEEEEcCCCCEEEEE
Q 002495 793 ----------------------------------------------AC-RLSLQ-----GHTKPIDSVCWDPSGELLASV 820 (915)
Q Consensus 793 ----------------------------------------------~~-~~~l~-----~h~~~V~si~~spdg~~Las~ 820 (915)
.. .+.+. .....+++|+.++.|++.+.|
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG 466 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG 466 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe
Confidence 00 00000 011346778888889988887
Q ss_pred eCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-------------------
Q 002495 821 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT------------------- 880 (915)
Q Consensus 821 s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~------------------- 880 (915)
... .|.+|++.+|-....+..-..|...|+.++...-++.+++++.+|.+++||..++..
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS 546 (910)
T ss_pred ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehh
Confidence 776 899999988743333333367899999999999999999999999999999876431
Q ss_pred ----------------------E-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 881 ----------------------M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 881 ----------------------~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+ .+.+|.+.|++++|+|||++|++++.|++||+||
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 0 2446999999999999999999999999999998
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=231.27 Aligned_cols=285 Identities=15% Similarity=0.246 Sum_probs=233.7
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--ceeeEeccCCCcEEEEEE-CCCCCEEEEEeCCCeEEE
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRF-SPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~--~~~~~l~~h~~~V~~l~f-spdg~~Lasgs~Dg~I~i 703 (915)
...+++.|.+.|+.++...+|+.|++++.|-+|++|+.... -++.++..|.+.|.||++ .++...+|+|+.|+.|.|
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 46788999999999999999999999999999999998866 688899999999999999 788899999999999999
Q ss_pred EECCCCCc---------eEEEec-cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEec
Q 002495 704 WDADNPGY---------SLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP 770 (915)
Q Consensus 704 Wdl~~~~~---------~~~~~~-~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp 770 (915)
||+++... ....+. |+...|++++.++.+ .+|++|+..+.|++||.++.+.+..+.++ +.++..+.
T Consensus 145 WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d 223 (735)
T KOG0308|consen 145 WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND 223 (735)
T ss_pred EEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcC
Confidence 99986321 122233 889999999999986 67889999999999999999988887765 46677899
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCce
Q 002495 771 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 849 (915)
Q Consensus 771 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i 849 (915)
++..++++++||+|++||+...+|+.++..|.+.|.++..+|+-.++++|+.| .|..-|+++......+.+ ...+|
T Consensus 224 DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick---~daPv 300 (735)
T KOG0308|consen 224 DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK---EDAPV 300 (735)
T ss_pred CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec---CCCch
Confidence 99999999999999999999999999999999999999999999999999999 999999987532222222 25667
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE-------------------------cccCCCeEEEEEeCCCCEEEE
Q 002495 850 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL-------------------------TAHEGLIAALAVSTETGYVAS 904 (915)
Q Consensus 850 ~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~-------------------------~~h~~~V~~l~~spdg~~Las 904 (915)
..+..+....-+.+++.|+.|+-|...-...+.. ......|...++-.|.++|+|
T Consensus 301 ~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlT 380 (735)
T KOG0308|consen 301 LKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLT 380 (735)
T ss_pred hhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEee
Confidence 7777776666668888999999997643211100 011113333444567889999
Q ss_pred EecCCcEEEcC
Q 002495 905 ASHDKFVKLWK 915 (915)
Q Consensus 905 gs~Dg~I~IWd 915 (915)
-..+|.+.+||
T Consensus 381 kDa~gnv~lwD 391 (735)
T KOG0308|consen 381 KDAKGNVALWD 391 (735)
T ss_pred ecCCCCEEEEE
Confidence 99999999997
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=203.13 Aligned_cols=229 Identities=17% Similarity=0.304 Sum_probs=188.9
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCC--EEEEEeCCCeEEEEEC
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDA 706 (915)
Q Consensus 629 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~I~iWdl 706 (915)
+....|.++|.|++|+.||..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+... .|+|||.|++|++||.
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 345678999999999999999999999999999999998 5777889999999999988665 8999999999999999
Q ss_pred CCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-----EEeecCceEEEEecCCCEEEEEEcC
Q 002495 707 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----RVFKGGTAQMRFQPHLGRYLAAAAE 781 (915)
Q Consensus 707 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~-----~~~~~~~~~v~~sp~~~~ll~~~~d 781 (915)
+. ..++.++. ..+.|++++.-. .+++.+..+..|.+|+++++... ..++-.+.++++..+...++.|+-+
T Consensus 145 R~-~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 145 RS-SNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred CC-CCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 97 55565554 557788887753 36778888999999999876432 1234467888888888888999999
Q ss_pred CeEEEEECCCc--eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCce
Q 002495 782 NVVSILDAETQ--ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 849 (915)
Q Consensus 782 g~I~i~D~~t~--~~~~~l~~h~~---------~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i 849 (915)
|++.|..+..+ +.-.+|+.|.. .|++|+|+|....|++.+.| ++.+||-... ..++....+..+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCcc
Confidence 99999988876 66667777763 47889999987788887777 9999998654 5566777789999
Q ss_pred EEEEEeCCCCEEEEEEc
Q 002495 850 HSCVFHPTYPSLLVIGC 866 (915)
Q Consensus 850 ~~i~~spdg~~l~s~s~ 866 (915)
+++.|+.+|.+++.+..
T Consensus 297 tcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceeEecCCCCEEEEEee
Confidence 99999999998887654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=212.93 Aligned_cols=249 Identities=19% Similarity=0.250 Sum_probs=215.3
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~i 703 (915)
+-..+..++||...|+.+.|+++...+++++.|..|+||.+...........|..+|+.+..+|.|+||++++.|++..+
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF 329 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEE
Confidence 44567789999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred EECCCCCceEEEecc--CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEE
Q 002495 704 WDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 778 (915)
Q Consensus 704 Wdl~~~~~~~~~~~~--h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~ 778 (915)
.|+++ +..+..... ..-.+++++||||| .+|.+|..||.|+|||+.+...+..|.+ .+..+.|+.+|-+++++
T Consensus 330 sd~~~-g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 330 SDISS-GSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA 407 (506)
T ss_pred EEccC-CcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEE
Confidence 99998 554444332 33468999999996 5778999999999999999998888865 46778899998899999
Q ss_pred EcCCeEEEEECCCceEEEEecCC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC
Q 002495 779 AAENVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 856 (915)
Q Consensus 779 ~~dg~I~i~D~~t~~~~~~l~~h-~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 856 (915)
+.|+.|++||+|..+...++... ...|.+++|+..|.+|+.++.+ .|++++-.+ +...++..+..|.+..+.+.|..
T Consensus 408 add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred ecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeecc
Confidence 99999999999998877776543 3479999999999999999888 777777544 34577888888888899999999
Q ss_pred CCCEEEEEEcCCeEEEEEC
Q 002495 857 TYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 857 dg~~l~s~s~dg~I~iwd~ 875 (915)
...++++++.|..++|+.+
T Consensus 487 ~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 487 HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceEEeeccchhheEEeec
Confidence 9999999999999988864
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=221.74 Aligned_cols=288 Identities=20% Similarity=0.247 Sum_probs=230.8
Q ss_pred CccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCC--EEEEEeCCC
Q 002495 622 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK 699 (915)
Q Consensus 622 ~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg 699 (915)
.|.-.+...+++|++.|.||...+.|.+||+|+.||+|+||.+.++++++++.. .+.|.||+|+|.+. .||++-.+
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~- 464 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGE- 464 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecC-
Confidence 456677788999999999999999999999999999999999999999999864 45799999999765 34443322
Q ss_pred eEEEEEC---------------------------------CC---CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCC-
Q 002495 700 TVRVWDA---------------------------------DN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD- 742 (915)
Q Consensus 700 ~I~iWdl---------------------------------~~---~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~D- 742 (915)
.+.|-+. .. ...-++....|...|..|.||..|+++..++..+
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 2333322 10 0111344456889999999999998776555433
Q ss_pred -CcEEEEEcCCCeeEEEe---ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEE
Q 002495 743 -GEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 818 (915)
Q Consensus 743 -g~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~La 818 (915)
..|.|+++...+....| ++.+.++.|+|...++++++ ...|+|||+...+.+.++......|.+++++|.|.-|+
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 56889998876655444 56788899999988777655 57899999999888888887888999999999999999
Q ss_pred EEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC------CCc-EE---EEcccC
Q 002495 819 SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS------ENK-TM---TLTAHE 887 (915)
Q Consensus 819 s~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~------~~~-~~---~~~~h~ 887 (915)
.++.| .++.||+.-.. +....+..|...+++++||+....|++|+.|+++.||.-. .+. ++ .+.+|.
T Consensus 624 ~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred EecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 99999 99999997543 5677888899999999999999999999999999988432 222 22 567787
Q ss_pred CC----eEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 888 GL----IAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 888 ~~----V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
.. |..+.|+|.-.+|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 65 9999999999999999999999999
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=221.02 Aligned_cols=277 Identities=19% Similarity=0.321 Sum_probs=214.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEecc---------------C---------CCcEEEEEECCCCC
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---------------H---------SSLITDVRFSPSMP 690 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~---------------h---------~~~V~~l~fspdg~ 690 (915)
+....||+.+.+ +|++|+.+|.|+||+.++...+.++.. | --...++.|++...
T Consensus 260 TTnAnCIcVs~r--~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~ 337 (1080)
T KOG1408|consen 260 TTNANCICVSSR--LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTD 337 (1080)
T ss_pred ccccceeeeecc--eEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCc
Confidence 445678888754 999999999999999877665554431 0 01234677898888
Q ss_pred EEEEEeCCCeEEEEECCCCCce--EEEeccCCCCeEEEEEcCCC----------CeEEEEEeCCCcEEEEEcCCCeeEEE
Q 002495 691 RLATSSFDKTVRVWDADNPGYS--LRTFMGHSASVMSLDFHPNK----------DDLICSCDGDGEIRYWSINNGSCTRV 758 (915)
Q Consensus 691 ~Lasgs~Dg~I~iWdl~~~~~~--~~~~~~h~~~V~sl~fsp~~----------~~ll~s~s~Dg~I~iwdl~~~~~~~~ 758 (915)
.|.+.-.|..|+|||+++..+. ...+.-|...|+++.-.|.+ ...|++|+.|++||+||+..+..-.+
T Consensus 338 klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~v 417 (1080)
T KOG1408|consen 338 KLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQV 417 (1080)
T ss_pred eEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccce
Confidence 9999999999999999875443 33445689999998766521 12466999999999999975310000
Q ss_pred ------------------------------e----------ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 002495 759 ------------------------------F----------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 798 (915)
Q Consensus 759 ------------------------------~----------~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l 798 (915)
| +.++.+++++|++.+|++|...|.++|||+...+....+
T Consensus 418 yrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~ 497 (1080)
T KOG1408|consen 418 YRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM 497 (1080)
T ss_pred eecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe
Confidence 0 124567899999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEcC---CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-----------------------------
Q 002495 799 QGHTKPIDSVCWDP---SGELLASVSED-SVRVWTVGSGSEGECVHELSCN----------------------------- 845 (915)
Q Consensus 799 ~~h~~~V~si~~sp---dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~----------------------------- 845 (915)
..|+..|.|+.|+. ..++|++++.| -|.|||+... ...+..+.+|
T Consensus 498 eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF 575 (1080)
T KOG1408|consen 498 EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF 575 (1080)
T ss_pred ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--cchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe
Confidence 99999999999986 35699999999 9999998532 1111111111
Q ss_pred --------------------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc---ccCCCeEEEEEeCCCCE
Q 002495 846 --------------------GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT---AHEGLIAALAVSTETGY 901 (915)
Q Consensus 846 --------------------~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~---~h~~~V~~l~~spdg~~ 901 (915)
...++.+++.|..+++++++.|+.|+|||+.+++.. .++ +|++....+...|.|-|
T Consensus 576 r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY 655 (1080)
T KOG1408|consen 576 RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY 655 (1080)
T ss_pred ehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE
Confidence 234567778888999999999999999999999987 343 57788999999999999
Q ss_pred EEEEecCCcEEEcC
Q 002495 902 VASASHDKFVKLWK 915 (915)
Q Consensus 902 Lasgs~Dg~I~IWd 915 (915)
||+.+.|++|.|||
T Consensus 656 ~atScsdktl~~~D 669 (1080)
T KOG1408|consen 656 LATSCSDKTLCFVD 669 (1080)
T ss_pred EEEeecCCceEEEE
Confidence 99999999999986
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=215.27 Aligned_cols=247 Identities=17% Similarity=0.257 Sum_probs=208.4
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~i 703 (915)
.-++..++++|.+.|..|+++. ..+++++.|++|+.|.++. ..++++.+ ...+..|.-+..+..++||+.+ |.|
T Consensus 98 qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~I 171 (433)
T KOG0268|consen 98 QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDI 171 (433)
T ss_pred hhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCce--eee
Confidence 3456788999999999999987 6788999999999999875 35666644 4457788888788899999866 999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--ecCceEEEEecCCCEEEEEEcC
Q 002495 704 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAE 781 (915)
Q Consensus 704 Wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~d 781 (915)
||... ..++..+.-..+.|.++.|+|....+|++|+.|+.|.+||++.+..++.. .-....++|+|..-.|+++..|
T Consensus 172 WD~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 172 WDEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred ccccc-CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeecccc
Confidence 99986 67788888888999999999999999999999999999999999887654 4567889999977778888889
Q ss_pred CeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC
Q 002495 782 NVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 859 (915)
Q Consensus 782 g~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~ 859 (915)
..++.||++.. .++..+.+|.+.|.+|.|+|.|.-|++|+.| +|+||.++.+......++-. -..|.++.|+.|..
T Consensus 251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR--Mq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR--MQHVFCVKYSMDSK 328 (433)
T ss_pred ccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh--hheeeEEEEecccc
Confidence 99999999976 6777888999999999999999999999999 99999998764433332211 34588999999999
Q ss_pred EEEEEEcCCeEEEEECCCCc
Q 002495 860 SLLVIGCYQSLELWNMSENK 879 (915)
Q Consensus 860 ~l~s~s~dg~I~iwd~~~~~ 879 (915)
+|++|+.|+.|++|.....+
T Consensus 329 yi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEEecCCCcceeeeecchhh
Confidence 99999999999999876543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-21 Score=205.39 Aligned_cols=256 Identities=18% Similarity=0.298 Sum_probs=205.7
Q ss_pred CcccccccCccceeeeEeecCC-CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEE
Q 002495 614 GRGMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 692 (915)
Q Consensus 614 ~~~~d~~~~~~~~~~~~l~~H~-~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~L 692 (915)
.-.|+...+.-++....++.+. .-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+|
T Consensus 224 ~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll 302 (626)
T KOG2106|consen 224 LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL 302 (626)
T ss_pred EEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe
Confidence 3456666665666666676554 5699999999995 7789999999999999888888888999999999999999655
Q ss_pred EEEeCCCeEEEEECCCCC---------------------c------------------eEEEeccCCCCeEEEEEcCCCC
Q 002495 693 ATSSFDKTVRVWDADNPG---------------------Y------------------SLRTFMGHSASVMSLDFHPNKD 733 (915)
Q Consensus 693 asgs~Dg~I~iWdl~~~~---------------------~------------------~~~~~~~h~~~V~sl~fsp~~~ 733 (915)
- |+.|..|..||-.-.. . ......+|.+..+.++.+|+.+
T Consensus 303 S-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~ 381 (626)
T KOG2106|consen 303 S-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN 381 (626)
T ss_pred e-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh
Confidence 5 9999999999832100 0 0112236888999999999866
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC
Q 002495 734 DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 813 (915)
Q Consensus 734 ~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd 813 (915)
++++|+.|+.+++|+-..-...+.+.....++.|+|.+ .++++...|...++|.++...+..... ..++++++|+|+
T Consensus 382 -q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~ 458 (626)
T KOG2106|consen 382 -QLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPD 458 (626)
T ss_pred -heeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCC
Confidence 45599999999999944344456677888999999998 999999999999999999766655555 889999999999
Q ss_pred CCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002495 814 GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 814 g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~ 875 (915)
|.+||.++.| .|+||.+..... +....-+++..+|+.+.|++|+.+|.+-+.|-.|.+|..
T Consensus 459 G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 459 GAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred CCEEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 9999999999 999999976533 223333445589999999999999999999999999954
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=213.88 Aligned_cols=230 Identities=23% Similarity=0.376 Sum_probs=194.8
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc
Q 002495 632 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 711 (915)
Q Consensus 632 ~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~ 711 (915)
+.|...|.|++.|+||+|||+|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++. ..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LS 277 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hH
Confidence 58999999999999999999999999999999999999999999999999999999888999999999999999997 66
Q ss_pred eEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEEEcCCeEEEEE
Q 002495 712 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILD 788 (915)
Q Consensus 712 ~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D 788 (915)
.+.++.+|.+.|..|..... ..++.+|+.|+++++|++.... ..+|.+ .+.|++|.. ..++++|+.+|.|.+|+
T Consensus 278 ~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWS 354 (479)
T ss_pred HHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEec-ccceeeccCCceEEEee
Confidence 78889999999999998765 4567678899999999995433 333333 345566654 47899999999999999
Q ss_pred CCCceEEEEecC-C-----------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-CcceEEEeccCCCceEEEEE
Q 002495 789 AETQACRLSLQG-H-----------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELSCNGNKFHSCVF 854 (915)
Q Consensus 789 ~~t~~~~~~l~~-h-----------~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~-~~~~i~~~~~~~~~i~~i~~ 854 (915)
+-+.+++++... | ..+|++++..|..+++++|+.+ .|++|-+..+- ....+..+. -.+.|++++|
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f 433 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAF 433 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEE
Confidence 999988877542 2 2389999999999999999988 99999998763 345556655 3678999999
Q ss_pred eCCCCEEEEEEc
Q 002495 855 HPTYPSLLVIGC 866 (915)
Q Consensus 855 spdg~~l~s~s~ 866 (915)
+++|+.|++|..
T Consensus 434 ~~sgk~ivagiG 445 (479)
T KOG0299|consen 434 SNSGKRIVAGIG 445 (479)
T ss_pred ccCCCEEEEecc
Confidence 999997777643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-22 Score=199.21 Aligned_cols=281 Identities=22% Similarity=0.349 Sum_probs=220.0
Q ss_pred EeecCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCc----------eeeE-----eccCCCcEEEEEECC-CCCEE
Q 002495 630 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK----------SKTN-----LEEHSSLITDVRFSP-SMPRL 692 (915)
Q Consensus 630 ~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~V~vwd~~t~~----------~~~~-----l~~h~~~V~~l~fsp-dg~~L 692 (915)
..+.|.+.|+++.+.+ .|+++++|+.||.|.|||+++.. .+.. -.+|...|.++.|.| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3467899999999988 68999999999999999997432 1111 136888999999999 66688
Q ss_pred EEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEE
Q 002495 693 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 767 (915)
Q Consensus 693 asgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~--~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~ 767 (915)
.+++.|.+++|||..+ -.....|+ ..+.|++-+++|- ...||++|..|-.|++.|+.+|.+.+++.+ ++..+.
T Consensus 118 tssSFDhtlKVWDtnT-lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNT-LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccc-ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 8999999999999998 44444554 5677888888874 356888999999999999999999998876 567899
Q ss_pred EecCCCEEEE-EEcCCeEEEEECCCc-eEEEEe--------------cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002495 768 FQPHLGRYLA-AAAENVVSILDAETQ-ACRLSL--------------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 830 (915)
Q Consensus 768 ~sp~~~~ll~-~~~dg~I~i~D~~t~-~~~~~l--------------~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl 830 (915)
|+|...++++ ++.||.|++||++.. .|...+ ..|.+.|+.++|..++.++++++.| .+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9999887665 566999999999865 344333 2466789999999999999999988 9999999
Q ss_pred CCCCCcceEEEeccCCC----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEE
Q 002495 831 GSGSEGECVHELSCNGN----KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 905 (915)
Q Consensus 831 ~s~~~~~~i~~~~~~~~----~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasg 905 (915)
.+|+....-..-..+.. .+. +. +.+...++..-.++.+.++.+-++..+ .+..|...|.|.++.++-..+.+|
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 98854221111111111 111 22 445555666667789999999998877 677899999999999999999999
Q ss_pred ecCCcEEEc
Q 002495 906 SHDKFVKLW 914 (915)
Q Consensus 906 s~Dg~I~IW 914 (915)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=228.10 Aligned_cols=273 Identities=20% Similarity=0.370 Sum_probs=214.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCC----CceeeEecc---CCCcEEEEEECC-CCCEEEEEeCCCeEEEEECCC
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEE---HSSLITDVRFSP-SMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t----~~~~~~l~~---h~~~V~~l~fsp-dg~~Lasgs~Dg~I~iWdl~~ 708 (915)
.+.+|+..++-..|++++.. .++||.+.. .++...++. -...+.+|+|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 45666777888788887743 677777652 222222221 122456778875 567999999999999999986
Q ss_pred --CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCC-EEEEEEcCC
Q 002495 709 --PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG-RYLAAAAEN 782 (915)
Q Consensus 709 --~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~-~ll~~~~dg 782 (915)
....+..|..|...|.+++|++...++|++|+.||+|++||++..+...++.+ .+..|.|+|... .|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 34456688999999999999999999999999999999999999888877765 456788998765 555566678
Q ss_pred eEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002495 783 VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 860 (915)
Q Consensus 783 ~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~ 860 (915)
.+.+||+|.. ++...+.+|.++|.|+.|+|++.+||+|+.| .|+|||+.+... ..+..+.. ..++.++.|-|...+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tInT-iapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTINT-IAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEee-cceeeeeeeccCccc
Confidence 9999999976 6788889999999999999999999999999 999999986533 33333322 678999999998877
Q ss_pred EEEEE---cCCeEEEEECCCCcEE--EEcccCCCeEEEEEeC-CCCEEEEEecCCcEE
Q 002495 861 LLVIG---CYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVK 912 (915)
Q Consensus 861 l~s~s---~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~ 912 (915)
.++.+ .|-.|+|||++..-+- .+..|...|+.++|.. |...|.+++.||.|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 55544 3559999999877554 7889999999999965 455788999999864
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-24 Score=236.00 Aligned_cols=251 Identities=21% Similarity=0.414 Sum_probs=221.0
Q ss_pred CCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEE
Q 002495 647 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 726 (915)
Q Consensus 647 g~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl 726 (915)
+.++..+..+-.++|||... +..|...|.|+..-..++.+++|+.|..+-+|.+.. -..+..+.+|...|.||
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-p~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-PNAITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccC-CchhheeeccCCcceee
Confidence 34455555666778888543 446888899999877888999999999999999987 44566799999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCC
Q 002495 727 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK 803 (915)
Q Consensus 727 ~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~ 803 (915)
.|++. ..+|++|+.+|+|++||++..+.++++.++ +..+.|+|.+.+++.++.|..+.+||++...|.+.+.+|..
T Consensus 77 ~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 99998 558889999999999999999988887664 56788999999998889999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-
Q 002495 804 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM- 881 (915)
Q Consensus 804 ~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~- 881 (915)
.|.++.|+|+|++++.+++| .++|||+..+ +.+.++..|...+..+.|||..-.++.|+.|++|++||+++.+.+
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 99999999999999999998 9999999877 788899999999999999999999999999999999999998888
Q ss_pred EEcccCCCeEEEEEeCCCCEEEEEecC
Q 002495 882 TLTAHEGLIAALAVSTETGYVASASHD 908 (915)
Q Consensus 882 ~~~~h~~~V~~l~~spdg~~Lasgs~D 908 (915)
........|.+++|+++++.+++|..+
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchh
Confidence 555668899999999999998888654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=215.13 Aligned_cols=235 Identities=17% Similarity=0.269 Sum_probs=189.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeE------------eccCCCcEEEEEECCCCC-EEEEEeCCCeE
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN------------LEEHSSLITDVRFSPSMP-RLATSSFDKTV 701 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~------------l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I 701 (915)
...|+++.|++.|..|++.+....++|+|-+....... .++|...++|.+|+|+.+ .+++++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 44799999999999999888888999999765544433 357999999999999654 78999999999
Q ss_pred EEEECCCCCceEEEec-----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe------ec--CceEEEE
Q 002495 702 RVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KG--GTAQMRF 768 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~-----~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~------~~--~~~~v~~ 768 (915)
||||+++....+..++ +..-.++.++|++++.. ||+|+.||.|.+|+.........+ .. .++++.|
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 9999998655544444 34457899999999875 779999999999998654322111 22 6789999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCc-eEEEEecCC--CCCeEEEEEcCCCCEEEEEeCC-------eEEEEECCCCCCcce
Q 002495 769 QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGH--TKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGEC 838 (915)
Q Consensus 769 sp~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h--~~~V~si~~spdg~~Las~s~d-------~I~iwdl~s~~~~~~ 838 (915)
++++++|++-+.|+++++||++.. +++....+- .-+-+.++|+|+.++|++|..- .+.+||..+. ..
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~ 449 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DT 449 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---ee
Confidence 999999999999999999999976 556555543 3356789999999999998631 5899998765 66
Q ss_pred EEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002495 839 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 873 (915)
Q Consensus 839 i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iw 873 (915)
+..+......|..|.|||.-+.|++++.||.++||
T Consensus 450 v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 450 VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 77777778889999999999999999999999887
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=203.58 Aligned_cols=263 Identities=13% Similarity=0.093 Sum_probs=194.7
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEE-eCCCeEEE
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRV 703 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~lafspdg~~L-asgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~i 703 (915)
+.+..+..|. .+.+++|+++++++ ++++.++.|++||+.+++.+..+..+.. +..++|+++++.|+++ +.|+.|++
T Consensus 22 ~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 22 EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEE
Confidence 3445555554 47789999999876 5667889999999999888777765544 5788999999987665 56899999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCC-CcEEEEEcCCCeeEEEee--cCceEEEEecCCCEEEEEE-
Q 002495 704 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAA- 779 (915)
Q Consensus 704 Wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~D-g~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~- 779 (915)
||+.+ ...+..+. +...+.+++|+|++..++ ++..+ ..+.+||.++++.+..+. .....+.|++++..+++++
T Consensus 100 ~d~~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIET-RKVLAEIP-VGVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCC-CeEEeEee-CCCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence 99987 45555554 234578899999987665 45544 467788999887765442 3456688999998887665
Q ss_pred cCCeEEEEECCCceEEEEecCCC-----C--CeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCcceEEEeccCCCceE
Q 002495 780 AENVVSILDAETQACRLSLQGHT-----K--PIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHELSCNGNKFH 850 (915)
Q Consensus 780 ~dg~I~i~D~~t~~~~~~l~~h~-----~--~V~si~~spdg~~Las~-s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 850 (915)
.++.|++||+++++++..+..+. . ....++|+|++++++++ ..+ .|.+||++++ +.+..+. +...+.
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~ 252 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVW 252 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcc
Confidence 48999999999998776654321 1 23468899999975554 333 8999999765 3333332 345788
Q ss_pred EEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 002495 851 SCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVST 897 (915)
Q Consensus 851 ~i~~spdg~~l~s~s-~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 897 (915)
+++|+|++.+|+++. .++.|++||+.+++++.........+.++|+|
T Consensus 253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred eEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 999999999998874 58999999999999874434456668888764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-22 Score=201.54 Aligned_cols=256 Identities=20% Similarity=0.337 Sum_probs=214.3
Q ss_pred EEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEE
Q 002495 649 LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 728 (915)
Q Consensus 649 ~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~f 728 (915)
.|++.-.+++++ ...++.+.+|.+.|+.++.......+.+++.|.+.+||.+++ +.|+..+.||.+.|++|.|
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKF 198 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEe
Confidence 344555555533 345677889999999999988778999999999999999998 8999999999999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEEc------CCC------------------------------e----eEEEeecC---ceE
Q 002495 729 HPNKDDLICSCDGDGEIRYWSI------NNG------------------------------S----CTRVFKGG---TAQ 765 (915)
Q Consensus 729 sp~~~~ll~s~s~Dg~I~iwdl------~~~------------------------------~----~~~~~~~~---~~~ 765 (915)
++.+. |+++++.|++-.||.. ... . .+..+.++ +.+
T Consensus 199 h~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99754 6679999999999972 110 0 11112222 233
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEecc
Q 002495 766 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 844 (915)
Q Consensus 766 v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~ 844 (915)
..|...+..+++++.|.+..+||+++++++..+.+|+...+.++-+|..+++++.+.| +.++||++ .....+..+.+
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQG 355 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQG 355 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecc
Confidence 4567778899999999999999999999999999999999999999999999999999 99999998 45678889999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-EEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 845 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 845 ~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~-~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
|...|+++.|.-+.+ +++|+.|.+|+|||+++-+. +.....+++++.++++..+.+|+.--++..|+|||
T Consensus 356 HtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 999999999988765 89999999999999988654 35556778999999999988999888888999997
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-22 Score=217.76 Aligned_cols=274 Identities=23% Similarity=0.322 Sum_probs=209.1
Q ss_pred EEEEcC---CCCEEEEEECCCcEEEEECCCCce------eeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 002495 640 CCHFSS---DGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 710 (915)
Q Consensus 640 ~lafsp---dg~~Lasgs~Dg~V~vwd~~t~~~------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~ 710 (915)
++.|++ ...+||.+.+||.|.++|.+.... ++.+..|...|.++.|.|....|++++.|.++++||++. .
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-S 132 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-c
Confidence 355655 346899999999999999874332 245568999999999999777899999999999999997 5
Q ss_pred ceEEE--eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE---------------------------EEee-
Q 002495 711 YSLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---------------------------RVFK- 760 (915)
Q Consensus 711 ~~~~~--~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~---------------------------~~~~- 760 (915)
.++.. +.||...|.++||.+.+..+||+|+.||.|.|||++..... +..+
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 55554 88999999999999999999999999999999999743300 0000
Q ss_pred --cCce---EEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEe--------cCC---CCCeEEEEEcCCCCEEEEEeCC
Q 002495 761 --GGTA---QMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSL--------QGH---TKPIDSVCWDPSGELLASVSED 823 (915)
Q Consensus 761 --~~~~---~v~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l--------~~h---~~~V~si~~spdg~~Las~s~d 823 (915)
..+. .+.+.-|...|++++. |+.|+|||+++..+.... ..| .-.+.+++.+..|.+|++.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 0111 2556677788888777 999999999986544322 223 2357788888888887777777
Q ss_pred -eEEEEECCCCCCcceEEEeccCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCC
Q 002495 824 -SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTE 898 (915)
Q Consensus 824 -~I~iwdl~s~~~~~~i~~~~~~~~~--i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd 898 (915)
.|++|++.+... ..+..+.++... ...-..+|++.++++|+.|...++|.+.+...- .+.+|.-.|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 999999986532 233333333222 233357899999999999999999999887654 78899999999999874
Q ss_pred C-CEEEEEecCCcEEEcC
Q 002495 899 T-GYVASASHDKFVKLWK 915 (915)
Q Consensus 899 g-~~Lasgs~Dg~I~IWd 915 (915)
. .-+++|++|..++||+
T Consensus 372 ~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCCCceeeccCcceEEEe
Confidence 3 3477889999999996
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-21 Score=212.47 Aligned_cols=283 Identities=20% Similarity=0.297 Sum_probs=222.6
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--ceeeE-----eccCCCcEEEEEECCCCCEEEEEeCCCeE
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTN-----LEEHSSLITDVRFSPSMPRLATSSFDKTV 701 (915)
Q Consensus 629 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~--~~~~~-----l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 701 (915)
..+.+|.+-|+++.|+|.+..|++++.|+++.||.-++. --+.. ..+......+.-|++++..|++-+..|..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 345699999999999999999999999999999987643 22222 22345568899999999999999999999
Q ss_pred EEEECCCCCc--eEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEe------ecCceEEEEecCC
Q 002495 702 RVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVF------KGGTAQMRFQPHL 772 (915)
Q Consensus 702 ~iWdl~~~~~--~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~-~~~~~------~~~~~~v~~sp~~ 772 (915)
++|...+... ....+.||.+.|.+|+|+|.|++|| +.+.|-+-|+|-.-..+ .-+.+ .....|+++.+..
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 9999443222 2345679999999999999988666 88899999998654111 11111 1234677777766
Q ss_pred CEEEEEEcCCeEEEEECCC-------------------------------------------ceE---------------
Q 002495 773 GRYLAAAAENVVSILDAET-------------------------------------------QAC--------------- 794 (915)
Q Consensus 773 ~~ll~~~~dg~I~i~D~~t-------------------------------------------~~~--------------- 794 (915)
-.++.++.+..+++|+... +..
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 6777777788888886420 000
Q ss_pred ------------------EEEecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeccCCCceE
Q 002495 795 ------------------RLSLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFH 850 (915)
Q Consensus 795 ------------------~~~l~~h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s~~~~~~i~~~~~~~~~i~ 850 (915)
+.++.+|.-.|++++.+|+++++|+++.. .|++|+..+- ..+..+..|.-.|+
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVT 576 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEE
Confidence 01245788889999999999999998854 5999998765 55668889999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 851 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 851 ~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-----~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.++|+||+++|++.+.|+++.+|...+.... ....|..-|+++.|+|++.+++|+|.|.+|+||.
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999999999999988655433 4678999999999999999999999999999995
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-22 Score=213.62 Aligned_cols=258 Identities=17% Similarity=0.292 Sum_probs=212.9
Q ss_pred CCCCcccccccCccceeeeEeec--CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--ceeeEeccCCCcEEEEEEC
Q 002495 611 DAGGRGMDVSQGFSFKEANSVRA--STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFS 686 (915)
Q Consensus 611 ~~~~~~~d~~~~~~~~~~~~l~~--H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~--~~~~~l~~h~~~V~~l~fs 686 (915)
...+++||+...-.-..+..|.. ....|++|.+.+||+.|++|++-.+|.|||+... .....+..-.-.+.+++.+
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~s 518 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 518 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC
Confidence 34556777765434444444442 4567999999999999999999999999999743 4444454445678889999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE--EeecCce
Q 002495 687 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFKGGTA 764 (915)
Q Consensus 687 pdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~--~~~~~~~ 764 (915)
||.+.+++++.||.|+|||+.+ ...++.|.||.+.+.||.++++|..|. +|+-|++||.||+++++.+. .|...+.
T Consensus 519 pDakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQIf 596 (705)
T KOG0639|consen 519 PDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQIF 596 (705)
T ss_pred CccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhhe
Confidence 9999999999999999999998 788999999999999999999987766 99999999999999987664 4566778
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec
Q 002495 765 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 843 (915)
Q Consensus 765 ~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~ 843 (915)
++.++|.+.++++|-..+.|.|....... .+.+.-|+..|.++.|.+.|+++++.+.| .+..|..--+. .+...+
T Consensus 597 SLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa---siFqsk 672 (705)
T KOG0639|consen 597 SLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---SIFQSK 672 (705)
T ss_pred ecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCcccc---ceeecc
Confidence 88999999999999999999998876543 34556699999999999999999999999 89999987663 333333
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002495 844 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 844 ~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~ 875 (915)
. ...|.+|.++.|.++|++|+.|+.-.||.+
T Consensus 673 E-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 E-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred c-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 2 577999999999999999999998888865
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=208.64 Aligned_cols=239 Identities=21% Similarity=0.254 Sum_probs=200.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC-----
Q 002495 634 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN----- 708 (915)
Q Consensus 634 H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~----- 708 (915)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|+.+..+..|-..|+||.|+.||.+|++|+.||.|.+|++.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 367899999999999999999999999999999999999999999999999999999999999999999998742
Q ss_pred ---CCceEEEeccCCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCCCeeEEEe--ecCceEEEEecCCCEEEEEEcCC
Q 002495 709 ---PGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAEN 782 (915)
Q Consensus 709 ---~~~~~~~~~~h~~~V~sl~fsp~~-~~ll~s~s~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg 782 (915)
...+++.|..|+-+|+++...+.+ +..+++++.|.+|++||+..+..+.++ .....++.++|.+..+++|+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence 245688899999999999887652 335669999999999999999988765 45678899999999999999999
Q ss_pred eEEEEECCCc----------------eEEEEecCCCC--CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec
Q 002495 783 VVSILDAETQ----------------ACRLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 843 (915)
Q Consensus 783 ~I~i~D~~t~----------------~~~~~l~~h~~--~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~ 843 (915)
.|.+.++... ..+..+.+|.. .|+|++++-||.+|++|+.| .|+|||+.+. .|++.+.
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~ 316 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQ 316 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHh
Confidence 9999876532 34556778888 99999999999999999999 9999999776 6677666
Q ss_pred cCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEC
Q 002495 844 CNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNM 875 (915)
Q Consensus 844 ~~~~~i~~i~~spdg~~l~s~s~-dg~I~iwd~ 875 (915)
...++|+.+.+.|-.+.++.+.. ...+-+|++
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred hhccccceeEeeccccceecccccCccCCchHh
Confidence 56788888888776554444322 224444443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-20 Score=205.55 Aligned_cols=353 Identities=13% Similarity=0.168 Sum_probs=247.3
Q ss_pred ceEEEEcCCCceec---CCCCeeEeCCCchhhhhhhhhcccCCCCCceeeeccc-CCCCCCCCCCcccccccCccceeee
Q 002495 554 PLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSH-DDTDPRDAGGRGMDVSQGFSFKEAN 629 (915)
Q Consensus 554 ~~~~fs~dg~~~~~---~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~ 629 (915)
-.+.|+.+..-++. ++.++||++...=+ ....-.|..|..++.++.. +...........+..++.++++.+.
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~----~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF----LEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCce----eeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeE
Confidence 35666666555443 67789999987432 1223345678888887554 3333333334444455556778889
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceee--EeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 707 (915)
Q Consensus 630 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~ 707 (915)
.+....+.|++++.+|.++.++.||+||.++.++...++... .|...++.|.+|+|++++..|++|+.||.|++||+.
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 999999999999999999999999999988888877765543 344567899999999999999999999999999998
Q ss_pred CCCceEE------Eec-cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---ecCceEEEEecCCCEEEE
Q 002495 708 NPGYSLR------TFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLA 777 (915)
Q Consensus 708 ~~~~~~~------~~~-~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll~ 777 (915)
....... .+. +...-|+++.|..++ .|++|+.-|+|.+||...+..+..+ ..++.+++..++++++++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfs 262 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFS 262 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEE
Confidence 7433321 111 234468889888654 5779999999999999999887665 457888999999999999
Q ss_pred EEcCCeEEEEECCCceE----EEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC--------------------
Q 002495 778 AAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-------------------- 832 (915)
Q Consensus 778 ~~~dg~I~i~D~~t~~~----~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s-------------------- 832 (915)
++.|+.|..|...+.+. ......|...|.+++..++ .+++|+.| .+.+-..+.
T Consensus 263 aGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~ 340 (691)
T KOG2048|consen 263 AGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSV 340 (691)
T ss_pred ccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeec
Confidence 99999998888776533 2233458888888888765 66777766 444433221
Q ss_pred ----------------------C------CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEE----------
Q 002495 833 ----------------------G------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN---------- 874 (915)
Q Consensus 833 ----------------------~------~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd---------- 874 (915)
. .....++........|.+.+.+|+|.+|+.+... .++||.
T Consensus 341 a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~ 419 (691)
T KOG2048|consen 341 APENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVI 419 (691)
T ss_pred CccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEE
Confidence 1 0001111112234557888999999988887621 111221
Q ss_pred --------------------------------------CCCCcEE-----EEcccCCCeEEEEEeCCCCEEEEEecCCcE
Q 002495 875 --------------------------------------MSENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFV 911 (915)
Q Consensus 875 --------------------------------------~~~~~~~-----~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I 911 (915)
+.+.... .-.+....|+.+..+++|.|||+.+.+|.|
T Consensus 420 ~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I 499 (691)
T KOG2048|consen 420 NVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQI 499 (691)
T ss_pred EeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceE
Confidence 1111100 011234578999999999999999999999
Q ss_pred EEcC
Q 002495 912 KLWK 915 (915)
Q Consensus 912 ~IWd 915 (915)
.+|+
T Consensus 500 ~v~n 503 (691)
T KOG2048|consen 500 FVYN 503 (691)
T ss_pred EEEE
Confidence 9996
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-21 Score=216.73 Aligned_cols=274 Identities=14% Similarity=0.238 Sum_probs=215.7
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-ceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 002495 632 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 710 (915)
Q Consensus 632 ~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~ 710 (915)
.+|+...+.|+|.++|.+|++++.||.|++|+.... +...++..+...|.+++.. +.+|++|+.+++|.+|.+.+ +
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps-~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS-G 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC-C
Confidence 478999999999999999999999999999997755 4455555588888888875 44999999999999999987 4
Q ss_pred ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---ecCceEEEEecCCCEEEEEEcCCeEEEE
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSIL 787 (915)
Q Consensus 711 ~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll~~~~dg~I~i~ 787 (915)
..-..+...+-++.+++|+-+|. +++.|+.|-.|++.++.+....+.+ ++.+.++.|+|.+..+++.+.||.|+||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 44444555668899999998876 5568999999999999887665555 5578899999999999999999999999
Q ss_pred ECCCceEEEEecCC--------CCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002495 788 DAETQACRLSLQGH--------TKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 858 (915)
Q Consensus 788 D~~t~~~~~~l~~h--------~~~V~si~~spdg~-~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg 858 (915)
|+.++.+.+++.+- ...+..++|+|+|. +++.+.++.|++|+.........+. .+.+...+..+.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99999887776542 34467789999955 5555555599999987764322222 22334459999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002495 859 PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 913 (915)
Q Consensus 859 ~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~I 913 (915)
.||++++.+|.|.|||+.+-.. ......|+|++|.|++..|-.-..-|...+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999998222 344568999999999886655544554443
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-23 Score=229.50 Aligned_cols=235 Identities=26% Similarity=0.437 Sum_probs=213.1
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 629 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~ 708 (915)
..+-.|...|.|+..-..++.+++|+.|..+-+|.+.....+..|.+|..+|.||.|+.+..+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 44567899999999988889999999999999999998888888999999999999999999999999999999999997
Q ss_pred CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEecCCCEEEEEEcCCeEE
Q 002495 709 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVS 785 (915)
Q Consensus 709 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~~ll~~~~dg~I~ 785 (915)
.+.++++.+|...|.++.|+|-+. ++++++.|+.+++||++...|.+.++++ +.+++|+|+|.+++.++.|..++
T Consensus 102 -Ak~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 102 -AKIVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred -hhhhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 788999999999999999999976 4579999999999999998999999875 45678999999999999999999
Q ss_pred EEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002495 786 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 864 (915)
Q Consensus 786 i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~ 864 (915)
|||...++...+|..|+..|.++.|+|..-++++|+.| +|++||+++. ..+.........|.+..|.+++..+++|
T Consensus 180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred eecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCceeeecC
Confidence 99999999999999999999999999999999999999 9999999765 5666666667889999999999988877
Q ss_pred EcCC
Q 002495 865 GCYQ 868 (915)
Q Consensus 865 s~dg 868 (915)
..+.
T Consensus 257 ~q~s 260 (825)
T KOG0267|consen 257 EQIS 260 (825)
T ss_pred chhh
Confidence 6543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=206.28 Aligned_cols=274 Identities=15% Similarity=0.220 Sum_probs=226.3
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-CceeeEeccC-CCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 002495 632 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 709 (915)
Q Consensus 632 ~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t-~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~ 709 (915)
.--...|.|+||+.+.+.||.+-.||.|.||++.. .-....+.++ ...|.+|+|+ ++.+|++.+.+|.|.-||+.+
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~- 99 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT- 99 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc-
Confidence 34467899999999999999999999999999984 4455666665 4689999999 556899999999999999998
Q ss_pred CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-----ecCceEEEEecCCCEEEEEEcCCeE
Q 002495 710 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAAENVV 784 (915)
Q Consensus 710 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~~sp~~~~ll~~~~dg~I 784 (915)
.+....+....+.|++++.+|.+. .++.|++||.++++++..++..... ++.+.++.|.+++.+++.|+.||.|
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI 178 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceE
Confidence 777888888899999999999875 4557888999999998887765432 3567889999999999999999999
Q ss_pred EEEECCCceEEEEec-----C---CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeC
Q 002495 785 SILDAETQACRLSLQ-----G---HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 856 (915)
Q Consensus 785 ~i~D~~t~~~~~~l~-----~---h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 856 (915)
++||+.++..++... . ...-|.++.|..++.++..-+.++|.+||...+ ..+..+.+|...|.+++..+
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~Lav~~ 255 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLALAVAD 255 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc---chhhhhhhhhcceeEEEEcC
Confidence 999999987766221 1 223478888886665544444559999999777 67788888999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcE--E---EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002495 857 TYPSLLVIGCYQSLELWNMSENKT--M---TLTAHEGLIAALAVSTETGYVASASHDKFVKL 913 (915)
Q Consensus 857 dg~~l~s~s~dg~I~iwd~~~~~~--~---~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~I 913 (915)
++.+++++|.|+.|..|...+++. + ....|...|.+++..++ .|++|+.|..+.|
T Consensus 256 ~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 256 NEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred CCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 999999999999998888877643 1 45578999999999888 8999999998865
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-21 Score=202.16 Aligned_cols=291 Identities=17% Similarity=0.269 Sum_probs=214.8
Q ss_pred ccceeeeEeecCCCCeEEEEEcCCC--CEEEEEECCCcEEEEECC----CCceeeEeccCCCcEEEEEECC-CCCEEEEE
Q 002495 623 FSFKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSP-SMPRLATS 695 (915)
Q Consensus 623 ~~~~~~~~l~~H~~~V~~lafspdg--~~Lasgs~Dg~V~vwd~~----t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasg 695 (915)
..+.....++-|.+.|+|++|+|.. +++|+|..-|.|-+||+. ....+..+..|..+|.+|.|+| +...|++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 3556677788899999999999965 588999999999999994 2344667889999999999999 45689999
Q ss_pred eCCCeEEEEECCCCC-ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEeecCceEEEEec
Q 002495 696 SFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQP 770 (915)
Q Consensus 696 s~Dg~I~iWdl~~~~-~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~----~~~~~~~~~~v~~sp 770 (915)
|+||+|++-|++..- +.+..+......+.++.|+.+...++ .++.=|...+||+++... ++..+-.+..++++|
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 999999999998621 12222323445667788887766665 666667999999998754 333445788899999
Q ss_pred CCCE-EEEEEcCCeEEEEECCCce----EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC---CCCCcceEEE
Q 002495 771 HLGR-YLAAAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG---SGSEGECVHE 841 (915)
Q Consensus 771 ~~~~-ll~~~~dg~I~i~D~~t~~----~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~---s~~~~~~i~~ 841 (915)
-..+ +++++.|++++|||++... +......|...|.++.|+|++-.|++.+.| .|+|||.. ...+..+...
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 8865 5556679999999998642 234455699999999999987778888888 99999984 1111111111
Q ss_pred e-ccCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc-CCCeEE-EEEeCCCCEEE-EEecCCcEEEc
Q 002495 842 L-SCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAA-LAVSTETGYVA-SASHDKFVKLW 914 (915)
Q Consensus 842 ~-~~~~~~--i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h-~~~V~~-l~~spdg~~La-sgs~Dg~I~IW 914 (915)
. ..++.+ .....|+|+..+|+++-.-..|-|||-..++.+ .+..- ...|.+ ..|+|-+..++ .++..|.|+||
T Consensus 413 Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 413 HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 1 111222 334589999999999999999999999999866 43332 225555 47899888444 45567889988
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-19 Score=194.12 Aligned_cols=291 Identities=16% Similarity=0.187 Sum_probs=219.7
Q ss_pred CCCCCcccccccCccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeE---eccC-CCcEEEEEE
Q 002495 610 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---LEEH-SSLITDVRF 685 (915)
Q Consensus 610 ~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~---l~~h-~~~V~~l~f 685 (915)
.+....+|++.++.... ..+...+.|..+.|+|.+..|+..+..+.+.+|+.+.+...++ |+.+ ...|.|++|
T Consensus 178 ~~h~lSVWdWqk~~~~~---~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKLG---PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred CccccchhhchhhhccC---cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence 34445667777654433 3445677899999999776666666688999999987765544 4433 367999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-----------
Q 002495 686 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS----------- 754 (915)
Q Consensus 686 spdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~----------- 754 (915)
.++| -+++|..+|.|.||+..+ .+..+....|.+.|.+++...+|. ++ +|+.|..|..||-.-.+
T Consensus 255 ~eng-dviTgDS~G~i~Iw~~~~-~~~~k~~~aH~ggv~~L~~lr~Gt-ll-SGgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 255 LENG-DVITGDSGGNILIWSKGT-NRISKQVHAHDGGVFSLCMLRDGT-LL-SGGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred cCCC-CEEeecCCceEEEEeCCC-ceEEeEeeecCCceEEEEEecCcc-Ee-ecCccceEEeccccccccccccCchhcC
Confidence 9988 678999999999999987 555555559999999999998864 44 79999999999932111
Q ss_pred eEEEe---------------------ec-----------CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC
Q 002495 755 CTRVF---------------------KG-----------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 802 (915)
Q Consensus 755 ~~~~~---------------------~~-----------~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~ 802 (915)
.++++ .. ....++.+|+.+.+++++.|+.+++|+ ..+++.+.. ..
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~ 407 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IE 407 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ec
Confidence 01110 00 112356788889999999999999999 444444433 45
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002495 803 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 881 (915)
Q Consensus 803 ~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~ 881 (915)
.++.|+.|+|.| .|+.|... ...|.|.++. ..+..... ...++++.|+|+|.+|++|+.|+.|+||.+..+...
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 788999999999 78888776 8889998763 33333333 888999999999999999999999999998765432
Q ss_pred --E-EcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 882 --T-LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 882 --~-~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
. -..|..+|+.+.|++|+.+|.+-+.|-.|..|+
T Consensus 483 y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 483 YSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 2 223448999999999999999999999999994
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-21 Score=203.82 Aligned_cols=216 Identities=20% Similarity=0.382 Sum_probs=181.0
Q ss_pred cceeeeEeecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCC-------ceeeEeccCCCcEEEEEECC-CCCEEEE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSP-SMPRLAT 694 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~V~vwd~~t~-------~~~~~l~~h~~~V~~l~fsp-dg~~Las 694 (915)
.+++-.+|++|.+.=+.++|++.. -+|++++.|++|++||+... .....+.+|.+.|.+++|++ +...|++
T Consensus 166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee
Confidence 445667899999988899999843 58999999999999998732 34567889999999999999 5568899
Q ss_pred EeCCCeEEEEECCC-CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCC
Q 002495 695 SSFDKTVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 773 (915)
Q Consensus 695 gs~Dg~I~iWdl~~-~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~ 773 (915)
+++|+.+.|||+++ ..++.....+|.+.|.|++|+|-+..+||+|+.|++|++||+|+-+
T Consensus 246 v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~------------------- 306 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN------------------- 306 (422)
T ss_pred ecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------------------
Confidence 99999999999995 3566778889999999999999999999999999999999998643
Q ss_pred EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCC-----------CcceEE
Q 002495 774 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGS-----------EGECVH 840 (915)
Q Consensus 774 ~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~-----------~~~~i~ 840 (915)
++++++.+|...|.+|.|+|... +|++++.| .+.|||+..-. ..+.+.
T Consensus 307 -------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF 367 (422)
T KOG0264|consen 307 -------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF 367 (422)
T ss_pred -------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE
Confidence 24567788999999999999765 78888888 99999997532 234567
Q ss_pred EeccCCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCC
Q 002495 841 ELSCNGNKFHSCVFHPTYPSL-LVIGCYQSLELWNMSE 877 (915)
Q Consensus 841 ~~~~~~~~i~~i~~spdg~~l-~s~s~dg~I~iwd~~~ 877 (915)
...+|...|..+.|+|...++ ++++.|+.+.||....
T Consensus 368 ~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 368 IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 778899999999999998865 5567788999998764
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=189.42 Aligned_cols=224 Identities=18% Similarity=0.314 Sum_probs=182.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCce
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 712 (915)
Q Consensus 633 ~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~ 712 (915)
.|..+|.+++|.++ ..+++|+.||.|+++|+.++. ...+-.|...|.||.+++....+++|++|++|++||.+. ...
T Consensus 52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~ 128 (323)
T KOG1036|consen 52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVV 128 (323)
T ss_pred ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-ccc
Confidence 47889999999874 578999999999999998775 455667999999999999888999999999999999996 334
Q ss_pred EEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-----EEeecCceEEEEecCCCEEEEEEcCCeEEEE
Q 002495 713 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----RVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 787 (915)
Q Consensus 713 ~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~-----~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~ 787 (915)
...+. ....|.++... ++ .|++|+.|..|.+||+++.... ..++-.+.++++.|.+.-+++++-||+|.+=
T Consensus 129 ~~~~d-~~kkVy~~~v~--g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 129 VGTFD-QGKKVYCMDVS--GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ccccc-cCceEEEEecc--CC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 44443 33489999887 33 4557888999999999986543 2345567899999988899999999999987
Q ss_pred ECCCc----eEEEEecCCCC---------CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002495 788 DAETQ----ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853 (915)
Q Consensus 788 D~~t~----~~~~~l~~h~~---------~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 853 (915)
.++.. +..+.|+.|.. +|++|+|+|-...|++|+.| .|.+||+.+. +.+..+......|.+++
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLS 281 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEE
Confidence 76665 55666777753 69999999998899999999 9999999776 44555555567799999
Q ss_pred EeCCCCEEEEEEc
Q 002495 854 FHPTYPSLLVIGC 866 (915)
Q Consensus 854 ~spdg~~l~s~s~ 866 (915)
|+.+|..|++++.
T Consensus 282 fs~dG~~LAia~s 294 (323)
T KOG1036|consen 282 FSMDGSLLAIASS 294 (323)
T ss_pred eccCCCeEEEEec
Confidence 9999999999975
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-21 Score=197.26 Aligned_cols=247 Identities=21% Similarity=0.421 Sum_probs=197.7
Q ss_pred EeecCCCCeEEEEEcCCC--CEEEEEECCCcEEEEECC----------------CCceeeEeccCCCcEEEEEECCC-CC
Q 002495 630 SVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----------------TLKSKTNLEEHSSLITDVRFSPS-MP 690 (915)
Q Consensus 630 ~l~~H~~~V~~lafspdg--~~Lasgs~Dg~V~vwd~~----------------t~~~~~~l~~h~~~V~~l~fspd-g~ 690 (915)
..-.|.+.|+.+.-++-+ .+.|+-+..|.|.||++. ..+++.++.+|...=++|+|||- ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 344688888888877754 466666788999999974 24567888999999999999993 33
Q ss_pred EEEEEeCCCeEEEEECCCCCceE--EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEE
Q 002495 691 RLATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 768 (915)
Q Consensus 691 ~Lasgs~Dg~I~iWdl~~~~~~~--~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~ 768 (915)
.|++|..-+.|++|...++...+ .-|.+|+..|..|+|+|..+.+|++|+.||+|+|||++.+....
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~----------- 294 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA----------- 294 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc-----------
Confidence 68888888899999998744433 45678999999999999999999999999999999999873211
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCC
Q 002495 769 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 847 (915)
Q Consensus 769 sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~ 847 (915)
++ ..+.|.+.|+.|.|+.+..+|++|++| +++|||++..+....+..++-|..
T Consensus 295 -------------------------~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 295 -------------------------AV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred -------------------------ee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 11 125688999999999988899999999 999999999888899999999999
Q ss_pred ceEEEEEeCC-CCEEEEEEcCCeEEEEECCCCcE-----------------EEEccc--CCCeEEEEEeCCC-CEEEEEe
Q 002495 848 KFHSCVFHPT-YPSLLVIGCYQSLELWNMSENKT-----------------MTLTAH--EGLIAALAVSTET-GYVASAS 906 (915)
Q Consensus 848 ~i~~i~~spd-g~~l~s~s~dg~I~iwd~~~~~~-----------------~~~~~h--~~~V~~l~~spdg-~~Lasgs 906 (915)
+|+++.|+|. ...|++++.|..|.|||+....- -.+..| ...|..|.|++.- .+|++.+
T Consensus 349 pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 349 PITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred CeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 9999999995 46788889999999999864321 023334 4578889998743 4888888
Q ss_pred cCCcEEEc
Q 002495 907 HDKFVKLW 914 (915)
Q Consensus 907 ~Dg~I~IW 914 (915)
.|| +.||
T Consensus 429 ~dG-fnVf 435 (440)
T KOG0302|consen 429 IDG-FNVF 435 (440)
T ss_pred ccc-eeEE
Confidence 898 4454
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=212.04 Aligned_cols=239 Identities=17% Similarity=0.253 Sum_probs=202.4
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002495 674 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 753 (915)
Q Consensus 674 ~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~ 753 (915)
..|....+.|+|.++|+.|++++.||.|++|+..+....-.++..+...|.+++.... .|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence 3688889999999999999999999999999987643444444447888888887643 5669999999999999876
Q ss_pred e---eEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEE
Q 002495 754 S---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 829 (915)
Q Consensus 754 ~---~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwd 829 (915)
. .+..|.....+++++.++..+++|+.|-.|++.+..+......+++|+.+|.++.|+|.+++||+.+.| .|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 4 567788899999999999999999999999999999999999999999999999999999999999888 999999
Q ss_pred CCCCCCcceEEEecc----C-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E--EcccCCCeEEEEEeCCCCE
Q 002495 830 VGSGSEGECVHELSC----N-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-T--LTAHEGLIAALAVSTETGY 901 (915)
Q Consensus 830 l~s~~~~~~i~~~~~----~-~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~--~~~h~~~V~~l~~spdg~~ 901 (915)
+.++.....+..+.. . ...+..++|+|++..|++.+.|+.|++|+..+.... . ...+...+.++.|+|+|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 988743333322211 1 334677899999999999999999999999998765 3 3345555999999999999
Q ss_pred EEEEecCCcEEEcC
Q 002495 902 VASASHDKFVKLWK 915 (915)
Q Consensus 902 Lasgs~Dg~I~IWd 915 (915)
||+++.||.|.|||
T Consensus 247 iAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 247 IAASTLDGQILVWN 260 (933)
T ss_pred EeeeccCCcEEEEe
Confidence 99999999999997
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=199.25 Aligned_cols=256 Identities=15% Similarity=0.220 Sum_probs=202.4
Q ss_pred EECC-CcEEEEECCCCceeeEeccCC-CcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCCceEEEeccCCCCeEEEEEc
Q 002495 653 GGHD-KKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 729 (915)
Q Consensus 653 gs~D-g~V~vwd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~-Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fs 729 (915)
++.| .++.+||+.++....++++.. ..-.++..- ++.+++++.. ...|.+|.+....... ...-..+.|.++.-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence 3344 459999999999998888652 211122211 3357776654 5578999997633333 333456889999999
Q ss_pred CCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECC---------CceEEEE
Q 002495 730 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAE---------TQACRLS 797 (915)
Q Consensus 730 p~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~---------t~~~~~~ 797 (915)
|+|.+ ++.|+..|.|++|.+.+|..+.++.. .++++.|+.++.+|++++.||.|.+|++. +-++++.
T Consensus 91 n~G~~-l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGYF-LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCceE-EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 99764 44666899999999999998887765 47889999999999999999999999753 3478889
Q ss_pred ecCCCCCeEEEEEcCCC--CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002495 798 LQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 874 (915)
Q Consensus 798 l~~h~~~V~si~~spdg--~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd 874 (915)
+..|.-+|+.+...+.| .+|++++.| ++++||+..+ ..+..+.. ...+.+|+.+|.+..+++|+.+|.|.+.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEec-CCcceeEEEcccccEEEecCCcceEEeee
Confidence 99999999999988754 489999999 9999999887 33433332 67899999999999999999999999988
Q ss_pred CCCCc-----------------EEEEcccCC--CeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 875 MSENK-----------------TMTLTAHEG--LIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 875 ~~~~~-----------------~~~~~~h~~--~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+.... ...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 75422 225778988 999999999999999999999999997
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=200.61 Aligned_cols=257 Identities=18% Similarity=0.253 Sum_probs=202.0
Q ss_pred CeEEEEEcCCCC-EEEEEECCCcEEEEECCC--CceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceE
Q 002495 637 KVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 713 (915)
Q Consensus 637 ~V~~lafspdg~-~Lasgs~Dg~V~vwd~~t--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~ 713 (915)
.|.+++|..... .+|+.+.|+.|++|.-.. ++....-+...+.-.||+......|+++|+..++|+|||++. +.+.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~h 114 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIH 114 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH-HHHh
Confidence 389999988763 333445788999997442 222222222222444555555558999999999999999996 7888
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC----ceEEEEecCCCEEEE-EEcCCeEEEEE
Q 002495 714 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRYLA-AAAENVVSILD 788 (915)
Q Consensus 714 ~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~~~ll~-~~~dg~I~i~D 788 (915)
+.+++|...|+++.|+-. +.+|++++..|.|.|..+.++.....|..+ +.-+.|++....++. ++.+|.|.+||
T Consensus 115 r~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 999999999999999876 456779999999999999998877777643 235778888776655 55689999999
Q ss_pred CCCceEEEEe-cCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEE
Q 002495 789 AETQACRLSL-QGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 865 (915)
Q Consensus 789 ~~t~~~~~~l-~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s 865 (915)
+....+++.+ ..|..+...|||+|... +|++.+.| .|.+||++......++.- ..+...++|.++|.+|++|.
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCceEEEeec
Confidence 9988777655 46999999999999655 88889999 999999987654444433 67899999999999999999
Q ss_pred cCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCC
Q 002495 866 CYQSLELWNMSENKTM--TLTAHEGLIAALAVSTET 899 (915)
Q Consensus 866 ~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg 899 (915)
..|.|..||++..+.- .+.+|...|++|+|-+.-
T Consensus 270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999976633 788999999999997764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=199.14 Aligned_cols=241 Identities=22% Similarity=0.414 Sum_probs=191.1
Q ss_pred EEEEEcC-------CCCEEEEEECCCcEEEEECCC---CceeeE------------------eccCCCcEEEEEECCCC-
Q 002495 639 ICCHFSS-------DGKLLATGGHDKKAVLWHTDT---LKSKTN------------------LEEHSSLITDVRFSPSM- 689 (915)
Q Consensus 639 ~~lafsp-------dg~~Lasgs~Dg~V~vwd~~t---~~~~~~------------------l~~h~~~V~~l~fspdg- 689 (915)
.|++|.. .|+++|.|+.|-.|.|||++- -.+..+ ..+|++.|.++.|+.+-
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5777743 357999999999999999851 111111 23699999999998854
Q ss_pred CEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeEEEeecCceEE
Q 002495 690 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKGGTAQM 766 (915)
Q Consensus 690 ~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~---~~~~~~~~~~~~~v 766 (915)
..||+||.|.+|++||+.+ +++..++..|...|.++.|+|....+|++|+.|++|.+.|++. ......+.+.+..+
T Consensus 257 nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred eeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 4789999999999999998 8889999999999999999999999999999999999999994 34456677899999
Q ss_pred EEecCCC-EEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEe
Q 002495 767 RFQPHLG-RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHEL 842 (915)
Q Consensus 767 ~~sp~~~-~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~ 842 (915)
.|.+... .++++..||+|+-+|+|.. +++.++..|..+|.+|+++..-. ++++++.+ .|++|++..... +.++..
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~ 414 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEH 414 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccc
Confidence 9999875 5666667999999999986 99999999999999999998554 78888888 999999965422 233322
Q ss_pred ccCCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCCCcEE
Q 002495 843 SCNGNKFHSCVFHPTYPSL-LVIGCYQSLELWNMSENKTM 881 (915)
Q Consensus 843 ~~~~~~i~~i~~spdg~~l-~s~s~dg~I~iwd~~~~~~~ 881 (915)
...-+...|+++.|+-.++ ++|+..+.++|||+.+...+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 2223446677788877654 55556667999999877544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-20 Score=188.16 Aligned_cols=288 Identities=19% Similarity=0.354 Sum_probs=220.9
Q ss_pred cceeeeEe-ecCCCCeEEEEEcC-----CCCEEEEEECCCcEEEEECCCCc---eeeEec--cCCCcEEEEEECCC----
Q 002495 624 SFKEANSV-RASTSKVICCHFSS-----DGKLLATGGHDKKAVLWHTDTLK---SKTNLE--EHSSLITDVRFSPS---- 688 (915)
Q Consensus 624 ~~~~~~~l-~~H~~~V~~lafsp-----dg~~Lasgs~Dg~V~vwd~~t~~---~~~~l~--~h~~~V~~l~fspd---- 688 (915)
.++....+ +.|+.+|..++|.. +...+|+++. ..|.||.....- .+..+. .|......++|+-+
T Consensus 26 ~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 26 SYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred ceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCC
Confidence 44444444 47889999999984 2246666664 478888876322 222222 36777888888764
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec------C
Q 002495 689 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------G 762 (915)
Q Consensus 689 g~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~------~ 762 (915)
+.+||+|+.-|.|+|.|+.+ +.+...+.+|...|..|.|+|+...|+++++.|-.||+|++.+..|+.+|.+ +
T Consensus 105 ~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 34789999999999999997 7888999999999999999999999999999999999999999999999854 5
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCce------EE---------------------E-EecCCCCCeEEEEEcCCC
Q 002495 763 TAQMRFQPHLGRYLAAAAENVVSILDAETQA------CR---------------------L-SLQGHTKPIDSVCWDPSG 814 (915)
Q Consensus 763 ~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~------~~---------------------~-~l~~h~~~V~si~~spdg 814 (915)
+.++.|+.++.++++++.|..|.+|++...+ +. + +-..|...|.|+.|- |
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 7889999999999999999999999987321 11 0 123477778888887 6
Q ss_pred CEEEEEeCC-eEEEEECCC-C----------CCcceEEEeccCCCceE--EEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 002495 815 ELLASVSED-SVRVWTVGS-G----------SEGECVHELSCNGNKFH--SCVFHPTYPSLLVIGCYQSLELWNMSENKT 880 (915)
Q Consensus 815 ~~Las~s~d-~I~iwdl~s-~----------~~~~~i~~~~~~~~~i~--~i~~spdg~~l~s~s~dg~I~iwd~~~~~~ 880 (915)
+++++-+.+ .|..|.... . .....+.++.-....|+ ..+|.+-.+.|+.|...|.|++||++..+.
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 888887766 999998721 1 11223344444344444 445677789999999999999999988765
Q ss_pred E-----EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 881 M-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 881 ~-----~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
. ........|...+|+.|+.+|+..++|++|.-||
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3 2233456899999999999999999999999886
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-20 Score=191.86 Aligned_cols=314 Identities=18% Similarity=0.225 Sum_probs=225.1
Q ss_pred ceeeecccCCCCCCCCCCcccccccCccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC------Ccee
Q 002495 597 NVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------LKSK 670 (915)
Q Consensus 597 ~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t------~~~~ 670 (915)
+|+.|++..+........+.+........-+.+.+.+|.+.|++|.|+.++.+||+|+.|..++||+++. .+++
T Consensus 18 ~i~~FL~QR~i~~~~~~~k~F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI 97 (609)
T KOG4227|consen 18 KIESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI 97 (609)
T ss_pred eeeeeeeecccCCChhhhhhhchhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc
Confidence 4666666544333333222222211112223456789999999999999999999999999999999863 3444
Q ss_pred eEec-cCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEecc--CCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 002495 671 TNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRY 747 (915)
Q Consensus 671 ~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~--h~~~V~sl~fsp~~~~ll~s~s~Dg~I~i 747 (915)
.... .|...|.|++|...++.|++|..+++|.+.|+++ ...+..+.. ..+.|+.+..+|. +++|++.+.++.|.+
T Consensus 98 ~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt-~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~ 175 (609)
T KOG4227|consen 98 GVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET-KQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSF 175 (609)
T ss_pred eeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc-ceeeeeecccCcccceeecccCCC-CceEEEEecCceEEE
Confidence 4443 3568999999999999999999999999999998 555555442 3358999999998 456668899999999
Q ss_pred EEcCCCe------eEEEeecCceEEEEecCCCEEEEE-EcCCeEEEEECCCce-EEEEe------cCCCCCeEEEEEcCC
Q 002495 748 WSINNGS------CTRVFKGGTAQMRFQPHLGRYLAA-AAENVVSILDAETQA-CRLSL------QGHTKPIDSVCWDPS 813 (915)
Q Consensus 748 wdl~~~~------~~~~~~~~~~~v~~sp~~~~ll~~-~~dg~I~i~D~~t~~-~~~~l------~~h~~~V~si~~spd 813 (915)
||++... |...+......+.|+|....|++. ...+.+.+||.+... .+... ........++.|+|+
T Consensus 176 ~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~ 255 (609)
T KOG4227|consen 176 IDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS 255 (609)
T ss_pred EeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC
Confidence 9998754 222333455678899988766555 557889999998753 22211 111223467899999
Q ss_pred CCEEEEEeCC-eEEEEECCCCCCcceEEEecc------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC---------
Q 002495 814 GELLASVSED-SVRVWTVGSGSEGECVHELSC------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE--------- 877 (915)
Q Consensus 814 g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~------~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~--------- 877 (915)
|..|.+.-.. .-.+||+.+.. ..+..+.. ....+.+|+|..+.. +++|+.+-.|++|.+..
T Consensus 256 G~Q~msiRR~~~P~~~D~~S~R--~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~ 332 (609)
T KOG4227|consen 256 GNQFMSIRRGKCPLYFDFISQR--CFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQ 332 (609)
T ss_pred CCeehhhhccCCCEEeeeeccc--ceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccc
Confidence 9988877777 66788886532 12222221 123466777876665 88888888999998742
Q ss_pred ---------------CcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 878 ---------------NKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 878 ---------------~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+....+.+|.+.++.+.|++...+|++.+-.+.++||-
T Consensus 333 IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 333 IGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 12336789999999999999999999999999999993
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-21 Score=209.20 Aligned_cols=258 Identities=22% Similarity=0.346 Sum_probs=200.3
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC--------CCceeeEeccCCCcEEEEEECCCCCEEEEE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------TLKSKTNLEEHSSLITDVRFSPSMPRLATS 695 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~--------t~~~~~~l~~h~~~V~~l~fspdg~~Lasg 695 (915)
+|....+++.|.+.|+.++|.+....|++++.||+|++|++. ..+.+.+|++|.++|.|+++..++..+++|
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 466667999999999999999999999999999999999982 346788999999999999999999999999
Q ss_pred eCCCeEEEEECCC---------CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---Cc
Q 002495 696 SFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GT 763 (915)
Q Consensus 696 s~Dg~I~iWdl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~ 763 (915)
+.||+|+.|++.. .......+.||.+.|+.++++....+|+ +|+.||+|++|+...... .+|.. +.
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll-scs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL-SCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee-eecCCceEEeeccCCcCc-cccCCccccC
Confidence 9999999996541 1234567889999999999999866654 999999999999877655 33322 22
Q ss_pred --eEEEEecCC-CEEEEEEcCCeEEEEECCCceEEEEecCC-------CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002495 764 --AQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGH-------TKPIDSVCWDPSGELLASVSED-SVRVWTVGS 832 (915)
Q Consensus 764 --~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h-------~~~V~si~~spdg~~Las~s~d-~I~iwdl~s 832 (915)
..+.+.... ...++...-+.-.++|.+....+..+... ...+.-+.++|.+.+.+++.++ .|+++|..+
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 223332222 22233333344444555554444333321 1347778999999999999999 999999988
Q ss_pred CCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEccc
Q 002495 833 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH 886 (915)
Q Consensus 833 ~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h 886 (915)
+ ..++....|...++++++.|+|.+|++++.|+.|++|.+....++ ....|
T Consensus 521 ~---~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 521 G---KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred c---ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 7 677888888999999999999999999999999999999877766 34444
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-21 Score=225.98 Aligned_cols=273 Identities=19% Similarity=0.283 Sum_probs=215.5
Q ss_pred EEEEEcCCCC-EEEEEE----------CCCcEEEEECCCCc------eeeEeccCCCcEEEEEECCCCCE----EEEEeC
Q 002495 639 ICCHFSSDGK-LLATGG----------HDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPR----LATSSF 697 (915)
Q Consensus 639 ~~lafspdg~-~Lasgs----------~Dg~V~vwd~~t~~------~~~~l~~h~~~V~~l~fspdg~~----Lasgs~ 697 (915)
-.++|+|++. +||+|. .+.++-||.++... .+..+ .-....++|+|.+.+.. ||.|.+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeecccc
Confidence 4578999886 666553 34566677654222 22222 23456889999987665 888899
Q ss_pred CCeEEEEECCCC-----CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-----ecCceEEE
Q 002495 698 DKTVRVWDADNP-----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMR 767 (915)
Q Consensus 698 Dg~I~iWdl~~~-----~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~-----~~~~~~v~ 767 (915)
||.|.+||...- ...+..+..|.+.|..|+|++..++++++|+.||.|.|||+..-+.-..+ ...+.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 999999998751 23466778899999999999999999999999999999999875443332 34678888
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCceEEEEecCCCC--CeEEEEEcCCCC-EEEEEeCC----eEEEEECCCCCCcceE
Q 002495 768 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGE-LLASVSED----SVRVWTVGSGSEGECV 839 (915)
Q Consensus 768 ~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~~--~V~si~~spdg~-~Las~s~d----~I~iwdl~s~~~~~~i 839 (915)
|.....++++.+. +|++.|||++..+.+..+..+.. .+..+.|+|+.. .|+++++| .|.+||+|... ..+
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~ 246 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPL 246 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cch
Confidence 9888777666555 67999999999988888877655 477899999876 44444444 79999998653 566
Q ss_pred EEeccCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCC-EEEEEecCCcEEEc
Q 002495 840 HELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG-YVASASHDKFVKLW 914 (915)
Q Consensus 840 ~~~~~~~~~i~~i~~spdg-~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~IW 914 (915)
+++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++++ .+......+..+.|+|... .|++++-||.|.||
T Consensus 247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 7778999999999999976 88999999999999999999999 7778888999999999776 78888999999987
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-20 Score=183.93 Aligned_cols=206 Identities=20% Similarity=0.329 Sum_probs=166.6
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCC------c-----eE---EEeccCCCCeEEEEEcCCCCeEEEE
Q 002495 674 EEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------Y-----SL---RTFMGHSASVMSLDFHPNKDDLICS 738 (915)
Q Consensus 674 ~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~iWdl~~~~------~-----~~---~~~~~h~~~V~sl~fsp~~~~ll~s 738 (915)
+.|.+.|.++...+ .|+++++|+.||.|.|||+.+.. . ++ ..-.+|.-.|.++.|.|-..-+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45788999999987 78999999999999999997532 1 11 1123688899999999988889999
Q ss_pred EeCCCcEEEEEcCCCeeEEEee--cCceEEEEecCCC---EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC
Q 002495 739 CDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 813 (915)
Q Consensus 739 ~s~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~---~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd 813 (915)
++.|.++++||.++......|+ +.+..-+++|-.. .++++..+-.|++.|+.+|.+.+++.+|...|.+|.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 9999999999999988776664 5566666776542 3445555779999999999999999999999999999998
Q ss_pred CC-EEEEEeCC-eEEEEECCCCC------------CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002495 814 GE-LLASVSED-SVRVWTVGSGS------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 879 (915)
Q Consensus 814 g~-~Las~s~d-~I~iwdl~s~~------------~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~ 879 (915)
.+ .|++|+.| .|++||++... ....++.-..|.+.+..++|..++.++++++.|..+++|+..+|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 77 67788888 99999998541 111222234567789999999999999999999999999998764
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-20 Score=202.93 Aligned_cols=247 Identities=15% Similarity=0.247 Sum_probs=187.4
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeE--eccCCCcEEEEEECCCC-CEEEEEeCCCeEEEEE
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWD 705 (915)
Q Consensus 629 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~--l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~iWd 705 (915)
.....|.+.|..+.|-|....|++++.|.++++||++..+++.. +.+|...|.++||.+.+ ..|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 44568999999999999778999999999999999998888777 89999999999999954 5789999999999999
Q ss_pred CCCCCc--------------------------eEEEeccCCCCeEE---EEEcCCCCeEEEEEeC-CCcEEEEEcCCCee
Q 002495 706 ADNPGY--------------------------SLRTFMGHSASVMS---LDFHPNKDDLICSCDG-DGEIRYWSINNGSC 755 (915)
Q Consensus 706 l~~~~~--------------------------~~~~~~~h~~~V~s---l~fsp~~~~ll~s~s~-Dg~I~iwdl~~~~~ 755 (915)
++-.+. .++....+...|.+ +.+..|.. .||+++. |+.|+|||++...+
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeeccccc
Confidence 974220 01222234444444 44445544 4556666 99999999997654
Q ss_pred EEEe--------------ecCceEEEEecCCCEEEEEEcCCeEEEEECCCc--eEEEEecCCCCC--eEEEEEcCCCCEE
Q 002495 756 TRVF--------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKP--IDSVCWDPSGELL 817 (915)
Q Consensus 756 ~~~~--------------~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~--V~si~~spdg~~L 817 (915)
.... ..+..++..+..|.++++.+.|+.|++|++.+. .++..+.++... ...-..+|++.+|
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 3221 124566777888899999999999999999875 344445544322 1223568999999
Q ss_pred EEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 002495 818 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSEN 878 (915)
Q Consensus 818 as~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg-~~l~s~s~dg~I~iwd~~~~ 878 (915)
++++.| ..++|.+.+.. .....+.+|...|++++|.|.. .-+++++.|-.++||++..+
T Consensus 333 ~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999 99999998664 3445567888899999998743 34777799999999999654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=211.78 Aligned_cols=236 Identities=19% Similarity=0.319 Sum_probs=192.5
Q ss_pred eEEEEEcC-CCCEEEEEECCCcEEEEECCC---CceeeEeccCCCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCce
Q 002495 638 VICCHFSS-DGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS 712 (915)
Q Consensus 638 V~~lafsp-dg~~Lasgs~Dg~V~vwd~~t---~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~iWdl~~~~~~ 712 (915)
+..|.|.. +.++|||++..|.|.+||+.. .+.+..|..|+..|++++|++ ...+|++|+.||+|++||++. ...
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKS 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-ccc
Confidence 44566764 567999999999999999986 666778999999999999998 556899999999999999998 666
Q ss_pred EEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEE---EeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002495 713 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTR---VFKGGTAQMRFQPHLGRYLAAAAENVVSILD 788 (915)
Q Consensus 713 ~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~-~~~---~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 788 (915)
..++.+....|.+|.|+|...+.|+++.+.|.|.+||++... +.. .+.+.+.++.|+|+..+|++|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 777888999999999999988899999999999999999753 322 3456789999999999999999999999999
Q ss_pred CCCceE--EEEecCCCCCeEEEEEcCCCC-EEEEEeC--C-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC-CCCEE
Q 002495 789 AETQAC--RLSLQGHTKPIDSVCWDPSGE-LLASVSE--D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TYPSL 861 (915)
Q Consensus 789 ~~t~~~--~~~l~~h~~~V~si~~spdg~-~Las~s~--d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp-dg~~l 861 (915)
..+.+. +.++. ...+|.+|.|-|+.. .|++++. | .|+|||++. .......+..|...++.++|.. |...+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR--PYIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR--PYIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecc--ccccceeeeccCccccceeccCCCceee
Confidence 987643 33333 356899999999776 5666653 3 899999984 3567788889999999999966 45567
Q ss_pred EEEEcCCeEEEEECCC
Q 002495 862 LVIGCYQSLELWNMSE 877 (915)
Q Consensus 862 ~s~s~dg~I~iwd~~~ 877 (915)
.+++.|+.|..-.+++
T Consensus 326 ~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 326 WSCSKDGTVLQHLFKN 341 (839)
T ss_pred EeecCccHHHHhhhhc
Confidence 7888888765544433
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=183.85 Aligned_cols=242 Identities=17% Similarity=0.246 Sum_probs=180.5
Q ss_pred eeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC----ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcE
Q 002495 670 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 745 (915)
Q Consensus 670 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~----~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I 745 (915)
+..+++|.+.|++++|+.||++|++++.|++|+||++++-. ++++.-. .-+.-+.+.|.||-..+++++-...+|
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 34578999999999999999999999999999999998521 1122111 123456799999999999899889999
Q ss_pred EEEEcCCCe---eEEE--------e----ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEE
Q 002495 746 RYWSINNGS---CTRV--------F----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 810 (915)
Q Consensus 746 ~iwdl~~~~---~~~~--------~----~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~ 810 (915)
++|.+...+ .... | ...+..+-+...+.++++++.|..|.+||++ |..+..+......-+..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 999875422 1100 1 1122233444555678888889999999999 8888877776677778899
Q ss_pred cCCCCEEEEEeCC-eEEEEECCCC-----CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC------
Q 002495 811 DPSGELLASVSED-SVRVWTVGSG-----SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN------ 878 (915)
Q Consensus 811 spdg~~Las~s~d-~I~iwdl~s~-----~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~------ 878 (915)
+|+|++|++++.- .|+||.+--. .+...+..+++|...|..++|+++...+++.+.||+++|||++-.
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999988 9999997433 234566788999999999999999999999999999999998532
Q ss_pred -cEE-----EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 879 -KTM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 879 -~~~-----~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
+++ .+.+-.+.-..+..+|+|..||.+. ...|++|
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 111 1122233444899999999887653 3345554
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=220.92 Aligned_cols=242 Identities=19% Similarity=0.362 Sum_probs=201.0
Q ss_pred CCCeEEEEEcCCCCE----EEEEECCCcEEEEECCC------CceeeEeccCCCcEEEEEECCCCC-EEEEEeCCCeEEE
Q 002495 635 TSKVICCHFSSDGKL----LATGGHDKKAVLWHTDT------LKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV 703 (915)
Q Consensus 635 ~~~V~~lafspdg~~----Lasgs~Dg~V~vwd~~t------~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~i 703 (915)
..+.++++|.+.|.. ||.|.+||.|.+||... ...+.++..|.+.|..|.|++... +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 446788999987765 89999999999999764 234566778999999999999655 9999999999999
Q ss_pred EECCCCCceEEE-eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec-----CceEEEEecCCC-EEE
Q 002495 704 WDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLG-RYL 776 (915)
Q Consensus 704 Wdl~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~-~ll 776 (915)
||+.+....... -....+.|.+|+|+..-.++|++++.+|.+.|||++..+.+-.+.. +...+.|+|+.. .++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999874443332 1225678999999998888999999999999999999877666543 345789999985 455
Q ss_pred EEEcCC---eEEEEECCCc-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceE
Q 002495 777 AAAAEN---VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 850 (915)
Q Consensus 777 ~~~~dg---~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~ 850 (915)
+++.|. .|.+||+|.- .++.++.+|...|.++.|++.+ .+|++++.| .|.+|+.+++ +.+.++...++++.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCF 300 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCccee
Confidence 555543 8999999865 6777888999999999999966 789999999 9999999887 78888888899999
Q ss_pred EEEEeCCCC-EEEEEEcCCeEEEEECCCCc
Q 002495 851 SCVFHPTYP-SLLVIGCYQSLELWNMSENK 879 (915)
Q Consensus 851 ~i~~spdg~-~l~s~s~dg~I~iwd~~~~~ 879 (915)
.+.|+|... .|++.+.||.|.||.+.+..
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999877 78888999999999987665
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=193.32 Aligned_cols=254 Identities=18% Similarity=0.242 Sum_probs=200.2
Q ss_pred EECCCCceeeEeccCCCcEEEEEECCCC--CEEEEEeCCCeEEEEECC---CCCceEEEeccCCCCeEEEEEcCCCCeEE
Q 002495 662 WHTDTLKSKTNLEEHSSLITDVRFSPSM--PRLATSSFDKTVRVWDAD---NPGYSLRTFMGHSASVMSLDFHPNKDDLI 736 (915)
Q Consensus 662 wd~~t~~~~~~l~~h~~~V~~l~fspdg--~~Lasgs~Dg~I~iWdl~---~~~~~~~~~~~h~~~V~sl~fsp~~~~ll 736 (915)
+|+.+......++.+...|++++|+|.. +++|+|..-|.|-+||+. ....-+..+..|..+|.+|.|+|.+...|
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 3444555566677889999999999954 478888889999999994 33345678889999999999999888888
Q ss_pred EEEeCCCcEEEEEcCCCeeEEEeec-----CceEEEEecCCCEEEEEEcCCeEEEEECCCceE-EEEecCCCCCeEEEEE
Q 002495 737 CSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW 810 (915)
Q Consensus 737 ~s~s~Dg~I~iwdl~~~~~~~~~~~-----~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~-~~~l~~h~~~V~si~~ 810 (915)
++.+.||+|++-|++.......+.. ....+.|+.+...++++..-|.+.+||.+++.. ...+.-|...|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 8999999999999997654333322 334566777888888888888999999998754 6667779999999999
Q ss_pred cCCCC-EEEEEeCC-eEEEEECCCCCCcc-eEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----CCcEEEE
Q 002495 811 DPSGE-LLASVSED-SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS----ENKTMTL 883 (915)
Q Consensus 811 spdg~-~Las~s~d-~I~iwdl~s~~~~~-~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~----~~~~~~~ 883 (915)
+|-.. +|++++.| +++|||++.-.... .+...-.|...|.++.|+|.+..|++.+.|..|+|||.. .......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 99655 88899999 99999998764444 345555678899999999999889999999999999984 2223333
Q ss_pred cccCC------CeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 884 TAHEG------LIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 884 ~~h~~------~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
..|.. ......|.|+..+|++|-.-..|-|||
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 33332 234558999999999999888888875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=196.28 Aligned_cols=269 Identities=17% Similarity=0.267 Sum_probs=211.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEe
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 716 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~ 716 (915)
.|..++|-|||..|+.+. +..+.|||...|..+.++++|.+.|.|++|+.||+++++|+.|+.|.||.-.-.+. ..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---LK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---ee
Confidence 899999999999888775 55899999999999999999999999999999999999999999999998765332 22
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-EeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEE
Q 002495 717 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 795 (915)
Q Consensus 717 ~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~-~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~ 795 (915)
..|.+.|.|+.|+|-.. .+++|+- ...-+|..+.....+ .....+.+++|..+|.+++.|-.+|+|.|-+....+.+
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 35999999999999855 4557763 456788877544332 22345677889999999999999999999865433322
Q ss_pred EEe--cCCCCCeEEEEEcCCC-----CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC
Q 002495 796 LSL--QGHTKPIDSVCWDPSG-----ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 867 (915)
Q Consensus 796 ~~l--~~h~~~V~si~~spdg-----~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~d 867 (915)
..- .+..++|.+|+|+|.. ..+++...+ ++.+|.+.. ..+..-+.-+....|+.+.++|.++++|++|
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCC
Confidence 221 2467899999999953 366777766 777777642 2333333335567788999999999999999
Q ss_pred CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 868 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 868 g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+.+++|.-+.-.+-++...+..|+.++..|++.+++.|+.||+|--|+
T Consensus 244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999755544447777889999999999999999999999997664
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-19 Score=196.90 Aligned_cols=291 Identities=19% Similarity=0.257 Sum_probs=223.2
Q ss_pred cceeeeEeecCCCCeEEEEEcCCC---CEEEEEECCCcEEEEECCCCc---------------------eee--------
Q 002495 624 SFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLK---------------------SKT-------- 671 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg---~~Lasgs~Dg~V~vwd~~t~~---------------------~~~-------- 671 (915)
.|+.+..+++|++.|.+|+|..-+ -+||+++.|..||||.+.-+. ...
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 788999999999999999998754 489999999999999864211 111
Q ss_pred --EeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCce------EEEeccCCCCeEEEEEcCCCCeEEEEEeCCC
Q 002495 672 --NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS------LRTFMGHSASVMSLDFHPNKDDLICSCDGDG 743 (915)
Q Consensus 672 --~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~------~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg 743 (915)
.+.+|.+.|.++.|+|.+..|++++.|.++.||.-++.... +....+.....+..-|+|+++.+ ++-+..|
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i-i~~g~~G 338 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI-IAHGRTG 338 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE-EEecccC
Confidence 12389999999999999999999999999999988763211 12223445568889999997644 4778899
Q ss_pred cEEEEEcCCC-ee--EEEe---ecCceEEEEecCCCEEEEEEcCCeEEEEECCC----ceEEEEecCCCCCeEEEEEcCC
Q 002495 744 EIRYWSINNG-SC--TRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDPS 813 (915)
Q Consensus 744 ~I~iwdl~~~-~~--~~~~---~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t----~~~~~~l~~h~~~V~si~~spd 813 (915)
..++|..... .. ...+ ..++..+.|.|.|.++++++.|-+-++|-.-. ...+..-..|...++|++|-+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 9999983322 11 1122 23567899999999999999999999986541 1233333458888999999986
Q ss_pred CCEEEEEeCC-eEEEEECCCC-------------------------------------------CC--------------
Q 002495 814 GELLASVSED-SVRVWTVGSG-------------------------------------------SE-------------- 835 (915)
Q Consensus 814 g~~Las~s~d-~I~iwdl~s~-------------------------------------------~~-------------- 835 (915)
...+++|.+. .+|+|+.... ..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 5566666666 7899974210 00
Q ss_pred ----------------cceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEE-EEcccCCCeEEE
Q 002495 836 ----------------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTM-TLTAHEGLIAAL 893 (915)
Q Consensus 836 ----------------~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg-----~I~iwd~~~~~~~-~~~~h~~~V~~l 893 (915)
...++.+-+|+..|.+++.+|+++.+++++... .|++|+..+.... .+.+|.-.|+.|
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 001123457889999999999999999988654 7999999888777 699999999999
Q ss_pred EEeCCCCEEEEEecCCcEEEcC
Q 002495 894 AVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 894 ~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+|+||+++|+++|.|+++.+|+
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred EECCCCcEEEEeecCceEEeee
Confidence 9999999999999999999995
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-19 Score=180.48 Aligned_cols=268 Identities=18% Similarity=0.270 Sum_probs=206.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------------ceeeEec-cCCCcEEEEEEC-------CCCCEEEEE
Q 002495 636 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------------KSKTNLE-EHSSLITDVRFS-------PSMPRLATS 695 (915)
Q Consensus 636 ~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~------------~~~~~l~-~h~~~V~~l~fs-------pdg~~Lasg 695 (915)
.-...+.|+|||..|++-+.|..+.+|++... +....++ .....|.+.+|. |+..++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 34567899999999999999999999987521 1111121 234568888886 467789999
Q ss_pred eCCCeEEEEECCCCCceEEEecc--CCC---CeEEEEEcCCCCeEEEEEeCCCcEEEEEc-CCCeeEEEe----------
Q 002495 696 SFDKTVRVWDADNPGYSLRTFMG--HSA---SVMSLDFHPNKDDLICSCDGDGEIRYWSI-NNGSCTRVF---------- 759 (915)
Q Consensus 696 s~Dg~I~iWdl~~~~~~~~~~~~--h~~---~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl-~~~~~~~~~---------- 759 (915)
+.|.-|.+||.-+ ++....+.+ |-+ ...+|+|+|||..|+ ++...+|++||+ +.|.....+
T Consensus 130 sr~~PIh~wdaft-G~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 130 SRDQPIHLWDAFT-GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred cccCceeeeeccc-cccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 9999999999988 555544443 333 345799999998776 567899999999 555432221
Q ss_pred ecCceEEEEecCCC-EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCc
Q 002495 760 KGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEG 836 (915)
Q Consensus 760 ~~~~~~v~~sp~~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~ 836 (915)
.+-+.+++|+|... .+++++...++-||......++..+.+|.+.|+.++|.++|+.|++|... .|.+||++...
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-- 284 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-- 284 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--
Confidence 23357788999886 66667778899999999999999999999999999999999999999865 99999998653
Q ss_pred ceEEEeccCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-Cc-EEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002495 837 ECVHELSCNGN---KFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NK-TMTLTAHEGLIAALAVSTETGYVASASHD 908 (915)
Q Consensus 837 ~~i~~~~~~~~---~i~~i~~spdg~~l~s~s~dg~I~iwd~~~-~~-~~~~~~h~~~V~~l~~spdg~~Lasgs~D 908 (915)
..+..+..|.. .-.-+...|++++|++|+.||.|++||+++ +. +..+..|...|+.++++|--.++|+++..
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 34444444433 233445678999999999999999999998 55 34777899999999999998888887654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-19 Score=188.20 Aligned_cols=247 Identities=16% Similarity=0.222 Sum_probs=201.4
Q ss_pred eeeEeecCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCceee--EeccCC-CcEEEEEECCCCCEEEEEeCCCeEE
Q 002495 627 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKT--NLEEHS-SLITDVRFSPSMPRLATSSFDKTVR 702 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~V~vwd~~t~~~~~--~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~ 702 (915)
.+..+.-...+|.+++|.|+|. .+++++....+++||+.+.+..+ ...++. ..+.....++++.+|+..+..|.|.
T Consensus 249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~ 328 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIH 328 (514)
T ss_pred hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEE
Confidence 4555666678999999999998 99999999999999998765433 334444 4577788899999999999999999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec----CceEEEEecCCCEEEEE
Q 002495 703 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAA 778 (915)
Q Consensus 703 iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~ll~~ 778 (915)
|....+ +..+..++ -.+.|..++|+.+++.++ +++.+|.|++||++...|++.+.. +.+.++.+.++.++++|
T Consensus 329 lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~G 405 (514)
T KOG2055|consen 329 LLHAKT-KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATG 405 (514)
T ss_pred eehhhh-hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEec
Confidence 999887 66666665 567899999999987766 556689999999999999998863 44678888999999999
Q ss_pred EcCCeEEEEECCC------ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeccCCCce
Q 002495 779 AAENVVSILDAET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNKF 849 (915)
Q Consensus 779 ~~dg~I~i~D~~t------~~~~~~l~~h~~~V~si~~spdg~~Las~s~d---~I~iwdl~s~~~~~~i~~~~~~~~~i 849 (915)
+..|.|.|||..+ .+++..+..-...|+++.|++|..+|+.++.. .+++-.+.+......+-.....-+.+
T Consensus 406 S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 406 SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence 9999999999653 46777777777889999999999999988865 79998887653222222223334668
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002495 850 HSCVFHPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 850 ~~i~~spdg~~l~s~s~dg~I~iwd~~ 876 (915)
+|++|+|.+.++++|..+|.|.+|.+.
T Consensus 486 tc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999999999999999999874
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-19 Score=190.81 Aligned_cols=218 Identities=18% Similarity=0.273 Sum_probs=182.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEe
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 716 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~ 716 (915)
.-.||+......|+++|+..++|+|||+....+.+.+++|...|+++.|+-.+.|||+++..|.|.|..+.+ +.....|
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f 159 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTF 159 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-Cccccce
Confidence 455666655568999999999999999998888888999999999999999999999999999999999998 4444455
Q ss_pred ccC-CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----ecCceEEEEecCCCE-EEEEEcCCeEEEEECC
Q 002495 717 MGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGR-YLAAAAENVVSILDAE 790 (915)
Q Consensus 717 ~~h-~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~sp~~~~-ll~~~~dg~I~i~D~~ 790 (915)
... ...|.-+.|++..+.+|.+++++|.|.+||+.....+..+ ..+...+||+|.... |++.+.|..|++||++
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 433 4456689999999999999999999999999877665443 456678999998865 4556779999999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002495 791 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 858 (915)
Q Consensus 791 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg 858 (915)
..+....+. ...+...++|.++|.+|++|... .|..||++..+ ..+..+..|...|++++|-+..
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence 876666554 45789999999999999999888 99999999654 5677778888899999998764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-19 Score=178.47 Aligned_cols=248 Identities=16% Similarity=0.257 Sum_probs=183.8
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCC-EEEEEeCCCeEE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVR 702 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~ 702 (915)
++...+.+.+|..+|.|++||+||++|+|++.|..|.+||+..+.+++.++ ...+|+.+.|+|... .+++.-.+..-.
T Consensus 54 T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 54 TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPV 132 (405)
T ss_pred ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcE
Confidence 334445678899999999999999999999999999999999999888886 567899999999544 333333454455
Q ss_pred EEECCCCCceEEEeccC---CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec----CceEEEEecCCCEE
Q 002495 703 VWDADNPGYSLRTFMGH---SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRY 775 (915)
Q Consensus 703 iWdl~~~~~~~~~~~~h---~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~l 775 (915)
+.++..+...+...... ...-.+..|.+.|+++ ++|...|.+.+||.++.+|+..++- .+..+.++-.+..+
T Consensus 133 vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yI-itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~l 211 (405)
T KOG1273|consen 133 VIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYI-ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFL 211 (405)
T ss_pred EEEecCCceeeccCCCccccccccccccccCCCCEE-EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEE
Confidence 66665422211111110 1112223577777654 5999999999999999999988864 34668899999999
Q ss_pred EEEEcCCeEEEEECCCc-------e--EEEEecC--CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEe
Q 002495 776 LAAAAENVVSILDAETQ-------A--CRLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHEL 842 (915)
Q Consensus 776 l~~~~dg~I~i~D~~t~-------~--~~~~l~~--h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~ 842 (915)
+.-+.|..|+.|+++.- + +.+++.. ....-.+++|+.+|.|+++++.. .++||.-..| ..++.+
T Consensus 212 iiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKIL 288 (405)
T KOG1273|consen 212 IINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKIL 288 (405)
T ss_pred EEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeee
Confidence 99999999999998731 1 1122211 22345689999999999998877 8999999887 566666
Q ss_pred ccCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002495 843 SCNG-NKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 843 ~~~~-~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~ 877 (915)
.+.. .....+.|+|-...|++. ..|.|++|....
T Consensus 289 hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 289 HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 6665 567889999998877777 779999998654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-19 Score=193.90 Aligned_cols=241 Identities=20% Similarity=0.264 Sum_probs=197.8
Q ss_pred eeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEE
Q 002495 669 SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 748 (915)
Q Consensus 669 ~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iw 748 (915)
+-..+++|++.|.||...+.|.+|++|+.||+|+||.+.+ +.|++++. ..+.|.||+|+|.+..-+++...+..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 4456789999999999999999999999999999999998 88888776 556899999999876654455445556555
Q ss_pred EcCCCe---------------------------------------eEE-EeecCceEEEEecCCCEEEEEEcC---CeEE
Q 002495 749 SINNGS---------------------------------------CTR-VFKGGTAQMRFQPHLGRYLAAAAE---NVVS 785 (915)
Q Consensus 749 dl~~~~---------------------------------------~~~-~~~~~~~~v~~sp~~~~ll~~~~d---g~I~ 785 (915)
+..-|. |+. .....+..+.|+..|.+|++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 543221 111 112245668899999999988774 4899
Q ss_pred EEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEE
Q 002495 786 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 865 (915)
Q Consensus 786 i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s 865 (915)
|+++...+....|....+.|.++.|+|.-.+|++++...|+|||+... ..++.+......|..+++||.|..|++++
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 999988877777766778899999999999999999999999999764 55666666678899999999999999999
Q ss_pred cCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 866 CYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 866 ~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
.|+.++.||+.-.... ++.-|...|++|+|++.-.++++|+.||.+.||
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999999866433 788999999999999999999999999999887
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-20 Score=181.50 Aligned_cols=281 Identities=18% Similarity=0.212 Sum_probs=203.9
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEec-cCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVW 704 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~iW 704 (915)
.+...+++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 35677889999999999998875 8999999999999999999999998 67889999998887 588899999999999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCC-cEEEEEcCC-----------CeeEEEee-------cCceE
Q 002495 705 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-EIRYWSINN-----------GSCTRVFK-------GGTAQ 765 (915)
Q Consensus 705 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg-~I~iwdl~~-----------~~~~~~~~-------~~~~~ 765 (915)
++.. +. ....|.-.++++.|++.. +...+... .+..|+-+. ...+...+ +.+.+
T Consensus 83 ~ia~-s~---~i~i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 83 TIAY-SA---FISIHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred EccC-cc---eEEEeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 9986 22 222344556666666431 11111111 111222111 11111111 12223
Q ss_pred EEEecCC-C--EEEEEEcCCeEEEEECCCc----------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002495 766 MRFQPHL-G--RYLAAAAENVVSILDAETQ----------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 831 (915)
Q Consensus 766 v~~sp~~-~--~ll~~~~dg~I~i~D~~t~----------~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~ 831 (915)
..+.... . .+++|..+|.|.+||+.++ +.+.....|..+|.++.|.+.-..=++++.+ .+..|.+.
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence 3322222 2 3555666899999999997 3444455789999999999866666667766 88888886
Q ss_pred CCC-CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002495 832 SGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDK 909 (915)
Q Consensus 832 s~~-~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg 909 (915)
... ....-.++....-.+..+.+-||++.+++++.|+.|+||..++...+ .+..|.+.|++++|+|+..++|+++.|+
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 431 11222333333556888899999999999999999999999999988 7888999999999999999999999999
Q ss_pred cEEEcC
Q 002495 910 FVKLWK 915 (915)
Q Consensus 910 ~I~IWd 915 (915)
.|.+||
T Consensus 316 rISLWk 321 (323)
T KOG0322|consen 316 RISLWK 321 (323)
T ss_pred eEEeee
Confidence 999997
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-16 Score=180.32 Aligned_cols=283 Identities=30% Similarity=0.512 Sum_probs=227.8
Q ss_pred ceeeeEeecCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCceeeEeccCCCcEEEEEECCCCC-EEEEEeCCCeEE
Q 002495 625 FKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVR 702 (915)
Q Consensus 625 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~-Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~ 702 (915)
......+..|...|.+++|++++.++++++. |+.+++|++..++.+..+.+|...|.+++|++++. .+++++.|+.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 5778889999999999999999999998886 99999999999899999999999999999999998 555558999999
Q ss_pred EEECCCCCceEE-EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEe---ecCceEEEEecCCCEEEE
Q 002495 703 VWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQMRFQPHLGRYLA 777 (915)
Q Consensus 703 iWdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~-~~~~---~~~~~~v~~sp~~~~ll~ 777 (915)
+||... +..+. .+.+|...+ ...|++++ .++++++.|+.+++||++.... +..+ ...+.++.|.|++..+++
T Consensus 225 ~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 225 LWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred EEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 999885 56666 688888886 44899987 4555999999999999997664 4444 345677789998888888
Q ss_pred EEcCCeEEEEECCCceEEEEec--CCCCCeEEEEEcCCCCEEEEE-eCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002495 778 AAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853 (915)
Q Consensus 778 ~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~si~~spdg~~Las~-s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 853 (915)
++.|+.+.+||.++........ .|...|..+.|.+++..++.+ ..+ .+.+|++.... ......... .+..+.
T Consensus 302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~-~~~~~~ 377 (466)
T COG2319 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKTLEGHS-NVLSVS 377 (466)
T ss_pred eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEEecCCc-eEEEEE
Confidence 8888889999999887776665 788889999994332555555 566 78889998764 222222222 278888
Q ss_pred EeCCCCEEEE-EEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 854 FHPTYPSLLV-IGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 854 ~spdg~~l~s-~s~dg~I~iwd~~~~~~~~~~~h~-~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+.+ ...++. +..++.+.+|+............. ..+..+.+.+++.++++++.++.+++|+
T Consensus 378 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 378 FSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred ECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 888 543444 578899999999999888555554 8999999999999999999999999995
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-17 Score=182.89 Aligned_cols=282 Identities=31% Similarity=0.547 Sum_probs=228.4
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-eeeEeccCC-CcEEEEEE-CCCCC-EEEEEeC-CCeEEEE
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHS-SLITDVRF-SPSMP-RLATSSF-DKTVRVW 704 (915)
Q Consensus 630 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~-~~~~l~~h~-~~V~~l~f-spdg~-~Lasgs~-Dg~I~iW 704 (915)
.+..|...|.++.|.+.+..++.++.|+.|.+|+..... .+..+..+. ..+..+.+ ++++. +++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998776 677777644 37888877 88887 5555455 9999999
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEEEE-E
Q 002495 705 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA-A 779 (915)
Q Consensus 705 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~-Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll~~-~ 779 (915)
|+.........+..|...|.+++|+|++. ++++++. |+.+++|++..++.+..+.+ .+.++.|.+++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99864567788889999999999999987 4446664 99999999998877777764 56788899888745554 7
Q ss_pred cCCeEEEEECCCceEEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002495 780 AENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 857 (915)
Q Consensus 780 ~dg~I~i~D~~t~~~~~-~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spd 857 (915)
.|+.|++||...+..+. .+.+|...+ ...|++++.++++++.+ .+++|+++.... .+..+..|...+.++.|+|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence 89999999999888887 688888876 44899999888888888 999999987644 23333566889999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EE--cccCCCeEEEEEeCCCCEEEEE-ecCCcEEEcC
Q 002495 858 YPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 915 (915)
Q Consensus 858 g~~l~s~s~dg~I~iwd~~~~~~~-~~--~~h~~~V~~l~~spdg~~Lasg-s~Dg~I~IWd 915 (915)
+..+++++.|+.+++||....... .. ..|...|..+.|.+++..++.+ ..|+.+++|+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 989999999988999999888766 33 3788889999994332455555 6888898885
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-19 Score=182.08 Aligned_cols=212 Identities=19% Similarity=0.361 Sum_probs=160.8
Q ss_pred cceeeeEeecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCcee---eEeccCCCcEEEEEECCC-CCEEEEEeCC
Q 002495 624 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSK---TNLEEHSSLITDVRFSPS-MPRLATSSFD 698 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~V~vwd~~t~~~~---~~l~~h~~~V~~l~fspd-g~~Lasgs~D 698 (915)
.++++.++.+|...=+.|+|||-. ..|++|..-+.|++|...++.-. .-|.+|+..|-+|+|+|. ...|++||.|
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC
Confidence 677899999999999999999932 36888888899999998875432 346689999999999994 5589999999
Q ss_pred CeEEEEECCCC-CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEE
Q 002495 699 KTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLA 777 (915)
Q Consensus 699 g~I~iWdl~~~-~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~ 777 (915)
|+|+|||++.. .+.....+.|.+.|+.|.|+.... +|++|+.||+++|||++..+
T Consensus 280 gsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~----------------------- 335 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFK----------------------- 335 (440)
T ss_pred ceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhcc-----------------------
Confidence 99999999974 233344588999999999998866 88899999999999998643
Q ss_pred EEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcc---------------eEE
Q 002495 778 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGE---------------CVH 840 (915)
Q Consensus 778 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~---------------~i~ 840 (915)
.+.++..|+-|..+|++|.|+|... .|++++.| .|.|||+....... .+.
T Consensus 336 -------------~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLL 402 (440)
T KOG0302|consen 336 -------------SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLL 402 (440)
T ss_pred -------------CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeE
Confidence 2356667788999999999999544 56666666 99999996542211 011
Q ss_pred EeccCCCceEEEEEeCCCC-EEEEEEcCCeEEEE
Q 002495 841 ELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELW 873 (915)
Q Consensus 841 ~~~~~~~~i~~i~~spdg~-~l~s~s~dg~I~iw 873 (915)
.+.-....+..+.||+.-. +|++.+.|| +.||
T Consensus 403 FVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 403 FVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 1122245577788998654 455555555 4444
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-18 Score=187.57 Aligned_cols=135 Identities=23% Similarity=0.410 Sum_probs=109.7
Q ss_pred cCCeEEEEECCCce-E----EEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCC----cceEEEeccCCCc
Q 002495 780 AENVVSILDAETQA-C----RLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSE----GECVHELSCNGNK 848 (915)
Q Consensus 780 ~dg~I~i~D~~t~~-~----~~~l~~h~~~V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~----~~~i~~~~~~~~~ 848 (915)
..|.|-||+++..- . +-.+ -....|+.+.|+| |...|+++++| .|+||.+..+.. ......+..|...
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 35677777776431 1 1111 1345689999999 56688888888 999999987532 3455678889999
Q ss_pred eEEEEEeCC-CCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 849 FHSCVFHPT-YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 849 i~~i~~spd-g~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
|+++.|||- ...|++++.|-+|++||+.+.+.. .+.+|.+.|.+++|+|||+.+|+.|.||+|+||+
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 999999994 467889999999999999999877 8999999999999999999999999999999985
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=181.18 Aligned_cols=269 Identities=22% Similarity=0.309 Sum_probs=195.1
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC--------C--------CceeeEeccCCCcEEEEEECC
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------T--------LKSKTNLEEHSSLITDVRFSP 687 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~--------t--------~~~~~~l~~h~~~V~~l~fsp 687 (915)
..+....|..|...|++|.|+|+|.+||+|+.+|.|.+|... + ....+.+.+|...|..++|++
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 566778899999999999999999999999999999999755 2 345667889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceE-E
Q 002495 688 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-M 766 (915)
Q Consensus 688 dg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~-v 766 (915)
++.++++++.|..+++||+.. +.....+.+|...|..++|.|-+. +|++-+.|...+.+++.....+..+...+.. .
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred CCceeeeeeccceEEEEEecc-ceeEeeccccccccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence 999999999999999999998 888999999999999999999865 4558888887888777655544333210000 0
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----------eEEEEECCCCCCc
Q 002495 767 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----------SVRVWTVGSGSEG 836 (915)
Q Consensus 767 ~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----------~I~iwdl~s~~~~ 836 (915)
.+.. ......++|--++.+ .-.+.++|+|+|.+|++...- ..++|+-. ...
T Consensus 212 ~~~~--------~e~~s~rLfhDeTlk---------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk--~l~ 272 (434)
T KOG1009|consen 212 AFNE--------REGKSTRLFHDETLK---------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK--DLK 272 (434)
T ss_pred ccCC--------CCcceeeeeecCchh---------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccc--ccc
Confidence 0000 011233333333322 235567888999888765421 23444432 222
Q ss_pred ceEEEeccCCCceEEEEEeC-----------------CCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeC
Q 002495 837 ECVHELSCNGNKFHSCVFHP-----------------TYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVST 897 (915)
Q Consensus 837 ~~i~~~~~~~~~i~~i~~sp-----------------dg~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp 897 (915)
..+..+.+-......+.|+| -.+.+++....+.|+|||....+.+ .-.-|-..|++++|++
T Consensus 273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~ 352 (434)
T KOG1009|consen 273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSD 352 (434)
T ss_pred CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecC
Confidence 34444444455555554444 2345666777789999999998877 4456999999999999
Q ss_pred CCCEEEEEecCCcEEE
Q 002495 898 ETGYVASASHDKFVKL 913 (915)
Q Consensus 898 dg~~Lasgs~Dg~I~I 913 (915)
||.+|+..+.||...+
T Consensus 353 dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 353 DGSVLLVSSTDGFCSL 368 (434)
T ss_pred CCcEEEEeccCCceEE
Confidence 9999999999997643
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=183.09 Aligned_cols=233 Identities=15% Similarity=0.332 Sum_probs=179.9
Q ss_pred EEEEECC-------CCCEEEEEeCCCeEEEEECCCCC--ceEE------------------EeccCCCCeEEEEEcCCCC
Q 002495 681 TDVRFSP-------SMPRLATSSFDKTVRVWDADNPG--YSLR------------------TFMGHSASVMSLDFHPNKD 733 (915)
Q Consensus 681 ~~l~fsp-------dg~~Lasgs~Dg~I~iWdl~~~~--~~~~------------------~~~~h~~~V~sl~fsp~~~ 733 (915)
.|+.|.. .|+++|.|+.|..|.|||++-.. .+.. .-.+|++.|.+|+|+..-+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 36799999999999999986211 1111 1236999999999999989
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeEEEee---cCceEEEEecCCC-EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEE
Q 002495 734 DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVC 809 (915)
Q Consensus 734 ~ll~s~s~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~ 809 (915)
++|++|+.|.+|++||+.++++..++. ..+.++.|++... .+++|+.|++|.++|.|........-...+.|..++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 999999999999999999999988875 4678899999875 567778899999999995433222222457799999
Q ss_pred EcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEEEEccc
Q 002495 810 WDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTMTLTAH 886 (915)
Q Consensus 810 ~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg-~~l~s~s~dg~I~iwd~~~~~~~~~~~h 886 (915)
|.+... .++++.+| .|+-+|+|... +++..+..|...|.+++++..- ..+++++.|+.|++|++..........|
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~ 414 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH 414 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence 999766 45555566 99999999764 8899999999999999998865 4577888999999999876554433333
Q ss_pred C---CCeEEEEEeCCCC-EEEEEecCCcEEEcC
Q 002495 887 E---GLIAALAVSTETG-YVASASHDKFVKLWK 915 (915)
Q Consensus 887 ~---~~V~~l~~spdg~-~Lasgs~Dg~I~IWd 915 (915)
. +...|+++.|+-. +++.|+..+.++|||
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEee
Confidence 2 3466777777665 577788888899997
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-20 Score=206.98 Aligned_cols=275 Identities=21% Similarity=0.372 Sum_probs=216.1
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~i 703 (915)
..+.++.+.+|.+.|+|+.|...|.++++|+.|..|+||..++..++..+++|.+.|++++.+.+..++++++.|..|++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-----ee--cCceEEEEecCCCEEE
Q 002495 704 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FK--GGTAQMRFQPHLGRYL 776 (915)
Q Consensus 704 Wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~-----~~--~~~~~v~~sp~~~~ll 776 (915)
|.+.. +.++..+.+|++.|++|+|+|-. +.+.||++++||.+-...+.. +. .-+..+.|...+..++
T Consensus 259 Wrl~~-~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 259 WRLPD-GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred EecCC-CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 99998 88999999999999999999863 778899999999982211111 11 1233455666677788
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002495 777 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 854 (915)
Q Consensus 777 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 854 (915)
+++.|+.-..|......+ +...+.-+.++.+- .+.++.-.+ .+++|++.++ ..++.+.+|...+..+.+
T Consensus 333 Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~ 403 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDV 403 (1113)
T ss_pred cccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeee
Confidence 888888877776543221 22222222333222 345555555 8999999877 556677788899999999
Q ss_pred eCCCCE-EEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 855 HPTYPS-LLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 855 spdg~~-l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
||-... ..+++.||.+.|||+-.+..+ .+.+ .+.+...+|+++|..++....-|.+.|+
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 997655 457789999999999998776 3444 4566777999999988877777777764
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-18 Score=176.93 Aligned_cols=267 Identities=16% Similarity=0.290 Sum_probs=190.0
Q ss_pred CEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECC--CCCEEEEEeCCCeEEEEECCCCCce-EEEeccCC-CCe
Q 002495 648 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHS-ASV 723 (915)
Q Consensus 648 ~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~iWdl~~~~~~-~~~~~~h~-~~V 723 (915)
..+|++...|.|+|||..++..+..|+++...+..++|.. ....+++|+.||+|++||++...+. ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5789999999999999999999999999999999999987 4568999999999999999975443 33445555 455
Q ss_pred EEEEEcCCCCeEEEEEe----CCCcEEEEEcCCCee-EEE----eecCceEEEEecCCC-EEEEEEcCCeEEEEECCCce
Q 002495 724 MSLDFHPNKDDLICSCD----GDGEIRYWSINNGSC-TRV----FKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQA 793 (915)
Q Consensus 724 ~sl~fsp~~~~ll~s~s----~Dg~I~iwdl~~~~~-~~~----~~~~~~~v~~sp~~~-~ll~~~~dg~I~i~D~~t~~ 793 (915)
.|++..-. ..++++|. .|-.|.+||++..+. ++. +...+++++|+|.+. .+++|+.||.|.|||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 66666544 45776654 367899999998765 444 345789999999884 66677789999999998652
Q ss_pred ---EEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEec---------cCCCceEEEEEeCCCC
Q 002495 794 ---CRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELS---------CNGNKFHSCVFHPTYP 859 (915)
Q Consensus 794 ---~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~---------~~~~~i~~i~~spdg~ 859 (915)
.+...-.|...|.++.|..++. .|.+.+.. +..+|+++.+.....+..-. .....+..+....+..
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 2233334778899999998872 45555544 99999998775321111100 0011222333334555
Q ss_pred EEEEEEc-CCeEEEEECC---CCcEE----EEc-ccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 860 SLLVIGC-YQSLELWNMS---ENKTM----TLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 860 ~l~s~s~-dg~I~iwd~~---~~~~~----~~~-~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.+++++. -+...++-+. ++... .+. +|...|+++.|.-.+.++.||++||.|.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 5555555 4555555433 33222 344 4788899999999999999999999999996
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-19 Score=189.43 Aligned_cols=291 Identities=19% Similarity=0.311 Sum_probs=226.8
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEec-cCCCcEEEEEECC--CCCEEEEEeCCCe
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKT 700 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~-~h~~~V~~l~fsp--dg~~Lasgs~Dg~ 700 (915)
.+.....|..|.+.|..|.|...|..|++|+.|..|.+||+...+.+..+. +|...|.-..|-| +...|++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 345667789999999999999999999999999999999999888777765 7999999889988 4568999999999
Q ss_pred EEEEECCCCCce--EEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee------c---CceEEEEe
Q 002495 701 VRVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------G---GTAQMRFQ 769 (915)
Q Consensus 701 I~iWdl~~~~~~--~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~------~---~~~~v~~s 769 (915)
|++=.+...+.+ ...+..|.+.|..++.-|+..+-|.+|+.|+.|.-+|++.+.....+. . ....++..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 999888764544 345667999999999999999999999999999999998875433221 1 33567788
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCceE------EEEec------CCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCC
Q 002495 770 PHLG-RYLAAAAENVVSILDAETQAC------RLSLQ------GHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSE 835 (915)
Q Consensus 770 p~~~-~ll~~~~dg~I~i~D~~t~~~------~~~l~------~h~~~V~si~~spdg~-~Las~s~d~I~iwdl~s~~~ 835 (915)
|... .+++++.|..+++||.+.-.. +.++. ...-.|+|++|+.++. +|++..+..|++|.-..+.-
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 8776 677788899999999875321 12221 2234699999996655 66666655999995433211
Q ss_pred --c-------ceEEE-eccCCCc--eEEEE-EeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCE
Q 002495 836 --G-------ECVHE-LSCNGNK--FHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 901 (915)
Q Consensus 836 --~-------~~i~~-~~~~~~~--i~~i~-~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~ 901 (915)
. ..++. +++|.+. |..+- |-|...|+++|+.-|.|.||+-++++++ .+.+....|+||--+|.-.+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 0 12222 5666543 55554 6788899999999999999999999988 45565569999999999999
Q ss_pred EEEEecCCcEEEc
Q 002495 902 VASASHDKFVKLW 914 (915)
Q Consensus 902 Lasgs~Dg~I~IW 914 (915)
||+++-|..|+||
T Consensus 451 LAsSGid~DVKIW 463 (559)
T KOG1334|consen 451 LASSGIDHDVKIW 463 (559)
T ss_pred hhccCCccceeee
Confidence 9999999999999
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=172.40 Aligned_cols=228 Identities=15% Similarity=0.275 Sum_probs=181.8
Q ss_pred eeEeccCCCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCC------ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCC
Q 002495 670 KTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 742 (915)
Q Consensus 670 ~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~iWdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~D 742 (915)
.-.+.+|.++|.+++|+| +...||+||+|.+|.||.+...+ +.+..+.+|...|--+.|+|...++|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 345679999999999999 66789999999999999997533 45788999999999999999999999999999
Q ss_pred CcEEEEEcCCCeeEEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC-eEEEEEcCCCCEEEE
Q 002495 743 GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLAS 819 (915)
Q Consensus 743 g~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~-V~si~~spdg~~Las 819 (915)
.+|.+||+.+++.+..+. .-+.++.|+.+|..+++++.|..|+|||.++++.+..-.+|.+. -..+.|..+|.++.+
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 999999999998776665 34678999999999999999999999999999999988888763 345668888986666
Q ss_pred EeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEE--EE--cccCCCe
Q 002495 820 VSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTM--TL--TAHEGLI 890 (915)
Q Consensus 820 ~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s-~dg~I~iwd~~~~~~~--~~--~~h~~~V 890 (915)
|... .+-+||-.+.++...+.++.. .+.|.---|.+|.+.++.+| .|+.|+.|.+...... .+ .....+-
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQ 312 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQ 312 (472)
T ss_pred ccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcc
Confidence 6543 699999988777766666665 45566667888888777665 5789999999887633 22 2233344
Q ss_pred EEEEEeCC
Q 002495 891 AALAVSTE 898 (915)
Q Consensus 891 ~~l~~spd 898 (915)
+.+.|-|.
T Consensus 313 RG~g~mPK 320 (472)
T KOG0303|consen 313 RGMGFMPK 320 (472)
T ss_pred cccccccc
Confidence 55555443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-17 Score=185.75 Aligned_cols=279 Identities=15% Similarity=0.218 Sum_probs=209.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccC---CCcEEEEEECC--CCCEEEEEeCCCeEEEEECCCC
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRFSP--SMPRLATSSFDKTVRVWDADNP 709 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h---~~~V~~l~fsp--dg~~Lasgs~Dg~I~iWdl~~~ 709 (915)
...-..+.|+|-...++++...-.|+|||.+.++.+..|..+ ...|+.+++-. |..+|++|+.||.||||+-...
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 335677889998889999987889999999999988888754 45789998866 5568999999999999975432
Q ss_pred C----ceEEEeccC-------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCce----EEEE-ecCCC
Q 002495 710 G----YSLRTFMGH-------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA----QMRF-QPHLG 773 (915)
Q Consensus 710 ~----~~~~~~~~h-------~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~----~v~~-sp~~~ 773 (915)
. +.+..+.+- .+.-.-++|.-..++++++| +-..|+|||.....++..+..+.. .+.. ...++
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 2 233333221 11123467877777777555 478999999999888877654332 2222 23468
Q ss_pred EEEEEEcCCeEEEEECCCc---eEEEEecCCCCC--eEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccC-
Q 002495 774 RYLAAAAENVVSILDAETQ---ACRLSLQGHTKP--IDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCN- 845 (915)
Q Consensus 774 ~ll~~~~dg~I~i~D~~t~---~~~~~l~~h~~~--V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~- 845 (915)
.+++|..||.|++||.+.. ..+...+.|... |..+.+-+.|. .|++++.+ .|++||++.......+......
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 8899999999999999875 356667778877 99999998776 48888888 9999999985222222222211
Q ss_pred -CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-------cCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 846 -GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-------HEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 846 -~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~-------h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
++..+++.+|+....+++|+. +.|+||++....+..+.. ..+.+.|++|+|..-++|+|+.|.+|.||.
T Consensus 1303 yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 335899999999999999888 999999998776553333 345789999999999999999999999983
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-16 Score=175.35 Aligned_cols=263 Identities=12% Similarity=0.195 Sum_probs=182.1
Q ss_pred EEEEECCCcEEEEECCC-Cc--eeeEeccCCCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCCce--EEEeccCCCCe
Q 002495 650 LATGGHDKKAVLWHTDT-LK--SKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYS--LRTFMGHSASV 723 (915)
Q Consensus 650 Lasgs~Dg~V~vwd~~t-~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~iWdl~~~~~~--~~~~~~h~~~V 723 (915)
+++...++.|.+||+.+ ++ .+..+. +.+....++++|++++|++++. ++.|.+|+++..+.. +... ......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCc
Confidence 34446789999999963 33 444454 3456788999999999887754 888999999743332 2222 233456
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeEEEeec--CceEEEEecCCCEEEEEEc-CCeEEEEECCCceEEE
Q 002495 724 MSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL 796 (915)
Q Consensus 724 ~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~----~~~~~~~~--~~~~v~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~ 796 (915)
..++|+|+++.++++...++.|.+||+++. +.+..+.+ +...+.++|++++++++.. ++.|.+||+++...+.
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 789999999888877777999999999743 22333322 3466789999998877665 6899999998643221
Q ss_pred -------EecCCCCCeEEEEEcCCCCEEEEEeC-C-eEEEEECCCC-CCcceEEEeccC------CCceEEEEEeCCCCE
Q 002495 797 -------SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCN------GNKFHSCVFHPTYPS 860 (915)
Q Consensus 797 -------~l~~h~~~V~si~~spdg~~Las~s~-d-~I~iwdl~s~-~~~~~i~~~~~~------~~~i~~i~~spdg~~ 860 (915)
.+. .......++|+|+|++|+++.. + .|.+||+... ...+.+..+... ......+.++|++++
T Consensus 163 ~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111 1234678999999999988876 3 9999999742 122334333221 122346889999999
Q ss_pred EEEEEc-CCeEEEEECCCCc-EEEEccc---CCCeEEEEEeCCCCEEEEEec-CCcEEEcC
Q 002495 861 LLVIGC-YQSLELWNMSENK-TMTLTAH---EGLIAALAVSTETGYVASASH-DKFVKLWK 915 (915)
Q Consensus 861 l~s~s~-dg~I~iwd~~~~~-~~~~~~h---~~~V~~l~~spdg~~Lasgs~-Dg~I~IWd 915 (915)
++++.. ++.|.+|++.... ...+.++ ....+.++|+|+|++|++++. +++|.||+
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 999865 6799999986532 2222222 235568999999999998775 89999984
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-17 Score=165.24 Aligned_cols=244 Identities=22% Similarity=0.323 Sum_probs=172.8
Q ss_pred eeeEeecCCCCeEEEEEcCC-CCEEEEEECC-------CcEEEEECCC---------CceeeEec-cCCCcEEEEEECCC
Q 002495 627 EANSVRASTSKVICCHFSSD-GKLLATGGHD-------KKAVLWHTDT---------LKSKTNLE-EHSSLITDVRFSPS 688 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspd-g~~Lasgs~D-------g~V~vwd~~t---------~~~~~~l~-~h~~~V~~l~fspd 688 (915)
..+.|..|.+.|+.|+-+|- .++|+|+..+ ..+.||.+.. .+++..+. .+-+.|.||.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 44567789999999999994 4566666432 3578998753 23344444 46678999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceEEEec-----cCCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCeeEEEeecC
Q 002495 689 MPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTRVFKGG 762 (915)
Q Consensus 689 g~~Lasgs~Dg~I~iWdl~~~~~~~~~~~-----~h~~~V~sl~fsp~-~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~ 762 (915)
+..|++-. |..|.+|++++..+.+..+. +|....++-+|+|. ..+.+ ....|+++..||+++.+
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~~-------- 204 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTMK-------- 204 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE-EEeCCCcEEEEEccchh--------
Confidence 99988876 88899999987444232222 23344555555552 12222 22235555555555443
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe-cCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceE
Q 002495 763 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECV 839 (915)
Q Consensus 763 ~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l-~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i 839 (915)
+...+ .+|...|..+.|+|+.. +|++|++| .|+|||.+..+ ..+
T Consensus 205 -------------------------------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~pv 251 (370)
T KOG1007|consen 205 -------------------------------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--FPV 251 (370)
T ss_pred -------------------------------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--ccc
Confidence 33333 34778899999999877 67777777 99999998653 678
Q ss_pred EEeccCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCC------------------------------CcEEEEcccCC
Q 002495 840 HELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSE------------------------------NKTMTLTAHEG 888 (915)
Q Consensus 840 ~~~~~~~~~i~~i~~spdg-~~l~s~s~dg~I~iwd~~~------------------------------~~~~~~~~h~~ 888 (915)
.++..|..+++++.|+|.. ..|++++.|..|.+|.... +.+.++..|++
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence 8999999999999999965 5678888999999986532 11125667999
Q ss_pred CeEEEEEeCCCC-EEEEEecCCcEEE
Q 002495 889 LIAALAVSTETG-YVASASHDKFVKL 913 (915)
Q Consensus 889 ~V~~l~~spdg~-~Lasgs~Dg~I~I 913 (915)
.|++++|+.-.. +||+-+.||.|.|
T Consensus 332 SVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ceEEEeeccCCCeeEEEeccCceEEe
Confidence 999999987555 5788899999876
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=165.01 Aligned_cols=216 Identities=21% Similarity=0.341 Sum_probs=167.1
Q ss_pred CccceeeeEee-cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce-eeEec-----cCCCcEEEEEECC--CCCEE
Q 002495 622 GFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLE-----EHSSLITDVRFSP--SMPRL 692 (915)
Q Consensus 622 ~~~~~~~~~l~-~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~-~~~l~-----~h~~~V~~l~fsp--dg~~L 692 (915)
..+++.+..+. .+-+.|.||.|.|+++.||+-. |..|.+|+++.... +..+. +|....++-+|+| +++.+
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 34677788887 6778999999999999999876 88999999986655 33332 3566788889999 77777
Q ss_pred EEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCC
Q 002495 693 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 772 (915)
Q Consensus 693 asgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~ 772 (915)
++.+ |+++..||+++..+....-..|...|.+++|+|+..++|++|+.||.|+|||.+.-+
T Consensus 188 ~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk------------------ 248 (370)
T KOG1007|consen 188 ATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK------------------ 248 (370)
T ss_pred EEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC------------------
Confidence 7765 889999999986665666668999999999999999999999999999999988543
Q ss_pred CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCC----------------
Q 002495 773 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGS---------------- 834 (915)
Q Consensus 773 ~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~---------------- 834 (915)
.++.++.+|..+|.+|.|+|... +|++++.| .|.+|...+-.
T Consensus 249 --------------------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~ 308 (370)
T KOG1007|consen 249 --------------------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESED 308 (370)
T ss_pred --------------------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcc
Confidence 34456677888888888888544 77777777 78887653221
Q ss_pred ----------CcceEEEeccCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCC
Q 002495 835 ----------EGECVHELSCNGNKFHSCVFHPTYPS-LLVIGCYQSLELWNMSE 877 (915)
Q Consensus 835 ----------~~~~i~~~~~~~~~i~~i~~spdg~~-l~s~s~dg~I~iwd~~~ 877 (915)
....+..+..|+..|++++|+.-..+ |++-+.||.+.|=.+..
T Consensus 309 ~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 309 EDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 01234467788999999999987776 45668889888766543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-16 Score=171.78 Aligned_cols=249 Identities=14% Similarity=0.175 Sum_probs=175.9
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECC-CCce--eeEeccCCCcEEEEEECCCCCEEEEEeC-C
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TLKS--KTNLEEHSSLITDVRFSPSMPRLATSSF-D 698 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs-~Dg~V~vwd~~-t~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs~-D 698 (915)
.++.+..+.. .+.+..++++|++++|++++ .++.|.+|+++ +++. +.... .......++|+|++++|++++. +
T Consensus 24 ~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~ 101 (330)
T PRK11028 24 ALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNA 101 (330)
T ss_pred ceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCC
Confidence 4555566653 46688899999999987775 47899999987 3332 22222 2345678999999999988875 8
Q ss_pred CeEEEEECCCCCce---EEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-------Ee--ecCceEE
Q 002495 699 KTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-------VF--KGGTAQM 766 (915)
Q Consensus 699 g~I~iWdl~~~~~~---~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~-------~~--~~~~~~v 766 (915)
+.|.+|++++.+.. +..+. +...+.+++|+|+++.++++...++.|++||+++...+. .. ..+...+
T Consensus 102 ~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~ 180 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHM 180 (330)
T ss_pred CeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceE
Confidence 89999999753322 22222 234467789999999888888888999999998743221 11 1234678
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCC--c--eEEEEecCC------CCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002495 767 RFQPHLGRYLAAAA-ENVVSILDAET--Q--ACRLSLQGH------TKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 833 (915)
Q Consensus 767 ~~sp~~~~ll~~~~-dg~I~i~D~~t--~--~~~~~l~~h------~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~ 833 (915)
.|+|++.+++++.. ++.|.+||++. + +.+..+..+ ......+.|+|++++|+++... .|.+|++...
T Consensus 181 ~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 181 VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 99999999988877 89999999973 3 333333322 1223468899999999888654 8999999654
Q ss_pred C-CcceEEEeccCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 002495 834 S-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS 876 (915)
Q Consensus 834 ~-~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~-dg~I~iwd~~ 876 (915)
. ..+.+..... ......+.++|++++|+++.. +++|.+|+++
T Consensus 261 ~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 261 GSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 3 2233333332 234567899999999998876 7899999875
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-16 Score=161.16 Aligned_cols=218 Identities=23% Similarity=0.376 Sum_probs=163.1
Q ss_pred cceeeeEeecCCCCeEEEEEcC--CCCEEEEEECCCcEEEEECC---------CCceeeEeccCCCcEEEEEECC--CCC
Q 002495 624 SFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD---------TLKSKTNLEEHSSLITDVRFSP--SMP 690 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafsp--dg~~Lasgs~Dg~V~vwd~~---------t~~~~~~l~~h~~~V~~l~fsp--dg~ 690 (915)
+|......+.|.+.|..|.|-+ -|..+|++++|++|.||.-. ......++......|++|+|.| -|-
T Consensus 48 ~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGL 127 (361)
T KOG2445|consen 48 TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGL 127 (361)
T ss_pred ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcce
Confidence 7888899999999999999965 68999999999999999752 2234556777888999999999 467
Q ss_pred EEEEEeCCCeEEEEECCCCCceE-----E-------EeccCCCCeEEEEEcCCC--CeEEEEEeCC-----CcEEEEEcC
Q 002495 691 RLATSSFDKTVRVWDADNPGYSL-----R-------TFMGHSASVMSLDFHPNK--DDLICSCDGD-----GEIRYWSIN 751 (915)
Q Consensus 691 ~Lasgs~Dg~I~iWdl~~~~~~~-----~-------~~~~h~~~V~sl~fsp~~--~~ll~s~s~D-----g~I~iwdl~ 751 (915)
.||+++.||+||||+.-+..... . ....+.....|+.|++.. ..+|+.|+.+ +.++||...
T Consensus 128 klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~ 207 (361)
T KOG2445|consen 128 KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN 207 (361)
T ss_pred EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec
Confidence 89999999999999987643221 1 111355667778887642 2355555533 244444332
Q ss_pred CCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC----CCEEEEEeCCeEEE
Q 002495 752 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS----GELLASVSEDSVRV 827 (915)
Q Consensus 752 ~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd----g~~Las~s~d~I~i 827 (915)
... +....+.++.+|.++|+.|+|.|+ ..+|++++.|.|+|
T Consensus 208 e~~-----------------------------------rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I 252 (361)
T KOG2445|consen 208 ENG-----------------------------------RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRI 252 (361)
T ss_pred CCc-----------------------------------ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEE
Confidence 211 112334566789999999999994 34788888889999
Q ss_pred EECCCC-----------------CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002495 828 WTVGSG-----------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 828 wdl~s~-----------------~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~ 876 (915)
|.+... -....+..+..|.+.|..+.|.-.|..|.+.|.||+|++|...
T Consensus 253 ~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 253 FKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 998731 1234567788999999999999999999999999999999764
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-17 Score=162.95 Aligned_cols=239 Identities=19% Similarity=0.371 Sum_probs=179.8
Q ss_pred ecCCCCeEEEEEcCCC-----CEEEEEECCCcEEEEECCCCceeeE---------eccCCCcEEEEEECC-CCCEEEEEe
Q 002495 632 RASTSKVICCHFSSDG-----KLLATGGHDKKAVLWHTDTLKSKTN---------LEEHSSLITDVRFSP-SMPRLATSS 696 (915)
Q Consensus 632 ~~H~~~V~~lafspdg-----~~Lasgs~Dg~V~vwd~~t~~~~~~---------l~~h~~~V~~l~fsp-dg~~Lasgs 696 (915)
..|.-+++.+-|.|+. .+|||++ -.+|||.+...+.... -..+..++++..|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4688899999999976 3666654 4899999874221111 124678999999998 777899999
Q ss_pred CCCeEEEEECCCC--CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-eecC-----ceEEEE
Q 002495 697 FDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FKGG-----TAQMRF 768 (915)
Q Consensus 697 ~Dg~I~iWdl~~~--~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~-~~~~-----~~~v~~ 768 (915)
-|-++.|||++++ +.....+..|...|.+|+|...+..+|++++.||.||+||++..+.-.. ++.. ...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 9999999999983 3346678899999999999998899999999999999999998764443 3322 245677
Q ss_pred ecCCCEEEEE-Ec-CCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCC---cceEE
Q 002495 769 QPHLGRYLAA-AA-ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSE---GECVH 840 (915)
Q Consensus 769 sp~~~~ll~~-~~-dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~---~~~i~ 840 (915)
++.+..+++. .. ...|.|.|++.. .++..+.+|...|+.|+|.|.. ..|+++++| .+.|||+..... ...+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 7777655543 33 468999999976 7888999999999999999954 489999999 899999975422 12233
Q ss_pred EeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002495 841 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 873 (915)
Q Consensus 841 ~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iw 873 (915)
.+. .+..|..+.|++...-.+.++.++++.+.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 333 47789999999765444445555555543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-17 Score=167.34 Aligned_cols=240 Identities=20% Similarity=0.337 Sum_probs=180.5
Q ss_pred cCCCCeEEEEEcCCC----CEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCC-CEEEEEeCCCeEEEEECC
Q 002495 633 ASTSKVICCHFSSDG----KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDAD 707 (915)
Q Consensus 633 ~H~~~V~~lafspdg----~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~iWdl~ 707 (915)
.|....+.++|+-|. .+||+|+.-|.|+|.|+.++++...+.+|...|..|.|.|+. .+|+++|.|.+||+|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 466777888887543 489999999999999999999999999999999999999965 588999999999999999
Q ss_pred CCCceEEEe---ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE------e---------ec--------
Q 002495 708 NPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------F---------KG-------- 761 (915)
Q Consensus 708 ~~~~~~~~~---~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~------~---------~~-------- 761 (915)
+ ..++..+ .+|.+.|.+++|+.++. .|++|+.|..|++|++...+.... + ..
T Consensus 167 ~-~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 T-DVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred C-CeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8 6677665 47999999999999988 556999999999999984321111 1 00
Q ss_pred --------CceEEEEecCCCEEEEEEcCCeEEEEEC-CCce-------------EEEEecCCCCCeEEE--EEcCCCCEE
Q 002495 762 --------GTAQMRFQPHLGRYLAAAAENVVSILDA-ETQA-------------CRLSLQGHTKPIDSV--CWDPSGELL 817 (915)
Q Consensus 762 --------~~~~v~~sp~~~~ll~~~~dg~I~i~D~-~t~~-------------~~~~l~~h~~~V~si--~~spdg~~L 817 (915)
.+.|+.|. ++.+++-+.++.|..|.. +-.+ .+.++.-....|.-| +|++-+++|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 01111121 356777778999999976 2111 222333333344444 556678899
Q ss_pred EEEeCC-eEEEEECCCCCCcceEE-EeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002495 818 ASVSED-SVRVWTVGSGSEGECVH-ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 818 as~s~d-~I~iwdl~s~~~~~~i~-~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~ 876 (915)
|.|... .|.+||++..+...+-. ........|...+|+.|+..|+..+.|+.|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999988 99999999876543322 222335678899999999999999999999999854
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=182.04 Aligned_cols=244 Identities=22% Similarity=0.294 Sum_probs=178.1
Q ss_pred eeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC-------CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCC
Q 002495 670 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 742 (915)
Q Consensus 670 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~-------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~D 742 (915)
..++..|.+.|+.+.|.+....|++++.||+|.+|++.. .-+.+.+|.+|.++|.|+++.+++..++ +|+.|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y-sgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY-SGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE-eeccC
Confidence 347778999999999999999999999999999999932 1256789999999999999999877655 99999
Q ss_pred CcEEEEEcCCC----------eeEEEeec---CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC--CCCCeEE
Q 002495 743 GEIRYWSINNG----------SCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--HTKPIDS 807 (915)
Q Consensus 743 g~I~iwdl~~~----------~~~~~~~~---~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~--h~~~V~s 807 (915)
|+|+.|++... .....+.+ .+..+.++.....|+.++.||+|++|+...... .++.. ..+.-.+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99999966421 11222333 344578888888999999999999999877655 23322 1222344
Q ss_pred EEEcCCCCEEEEEeC--CeEEEEECCCCCCcceEEEec----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002495 808 VCWDPSGELLASVSE--DSVRVWTVGSGSEGECVHELS----CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 881 (915)
Q Consensus 808 i~~spdg~~Las~s~--d~I~iwdl~s~~~~~~i~~~~----~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~ 881 (915)
+.|-...-.+...+. ..--++++........+.... .....+..++++|.....+++..|+.|+++|..+++++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 554432211111111 122233333222111111111 11245778899999999999999999999999999988
Q ss_pred -EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 882 -TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 882 -~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
...+|...|+++++.|+|.+|+++++||.|++|+
T Consensus 525 ~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 525 HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred hheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 7889999999999999999999999999999996
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-16 Score=153.07 Aligned_cols=268 Identities=16% Similarity=0.224 Sum_probs=192.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCC----------CceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 002495 636 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT----------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 636 ~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t----------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWd 705 (915)
..|.+-+|+|.+++|++|..+|.|.++.+++ ...+..+.+|.++|..++|. ...|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3577788999999999999999999998753 12345567999999999998 34666666 59999998
Q ss_pred CCCCCceE-----EE--eccC-----CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceE---EEEec
Q 002495 706 ADNPGYSL-----RT--FMGH-----SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQP 770 (915)
Q Consensus 706 l~~~~~~~-----~~--~~~h-----~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~---v~~sp 770 (915)
.++..+.. .. ..-| --.|+++...|..+.+|.+| .|+.++-||+++|+..++++++..- +....
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 76422211 00 0112 23688899999888777444 7999999999999999999987644 44445
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEEEecCCC----------CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEE
Q 002495 771 HLGRYLAAAAENVVSILDAETQACRLSLQGHT----------KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH 840 (915)
Q Consensus 771 ~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~----------~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~ 840 (915)
..+.+++++.||+++|||.++.+++..+...+ .+|-+++. +..++++|+.-.+.+|.+++.+. .++.
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~-t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSES-TCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCc-eEEE
Confidence 66889999999999999999999988775422 23555554 46788888777999999987632 3443
Q ss_pred EeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC-CCEEEEEecCCcEEEcC
Q 002495 841 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 915 (915)
Q Consensus 841 ~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~IWd 915 (915)
.+ ...+..+.|..+ .+++++..+.|.-|.+..--...+.......++..|... -++|..++..+++.|++
T Consensus 244 pi---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 244 PI---PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ec---ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 33 455667777544 578888888999998765444444444444455555322 34666677777887763
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-15 Score=179.01 Aligned_cols=292 Identities=19% Similarity=0.230 Sum_probs=208.2
Q ss_pred cceeeeEeecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCC-------ceeeEeccCCCcEEEEEECCCCCEEEEE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSMPRLATS 695 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~V~vwd~~t~-------~~~~~l~~h~~~V~~l~fspdg~~Lasg 695 (915)
....+..+..|...|..++.+++. .++++|+.||+|+|||+... +...++......+.++.+.+.+..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 456778889999999999988755 99999999999999997632 2233344457789999999999999999
Q ss_pred eCCCeEEEEECCCCCc------eEEEeccC-CCCe-EEEEEcCCCC-eEEEEEeCCCcEEEEEcCCCeeEEEee-----c
Q 002495 696 SFDKTVRVWDADNPGY------SLRTFMGH-SASV-MSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK-----G 761 (915)
Q Consensus 696 s~Dg~I~iWdl~~~~~------~~~~~~~h-~~~V-~sl~fsp~~~-~ll~s~s~Dg~I~iwdl~~~~~~~~~~-----~ 761 (915)
+.||.|++.+++.... ..+....+ .+.+ ..-+|..... .+++.+..-+.|..||+++......++ |
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999999975111 11222212 2233 3334443333 367778888999999999876655543 4
Q ss_pred CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEec-CCCCCeEEEEEcCCC---CEEEEEeC-C--eEEEEECCCCC
Q 002495 762 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPSG---ELLASVSE-D--SVRVWTVGSGS 834 (915)
Q Consensus 762 ~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~-~h~~~V~si~~spdg---~~Las~s~-d--~I~iwdl~s~~ 834 (915)
-+++++.+|.+..++.|...|.+.+||+|-+.++.... .+..+|+.++.+|-. ...++++. . .|.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 57889999999999999999999999999888877664 245778888777733 35555544 3 89999999884
Q ss_pred CcceEEEe----------c------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----------------
Q 002495 835 EGECVHEL----------S------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----------------- 881 (915)
Q Consensus 835 ~~~~i~~~----------~------~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~----------------- 881 (915)
....+..- . .+......+.+...+..+++|+.|..|+.||....+..
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s 1356 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSES 1356 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchh
Confidence 32222211 0 11112334455666778999999999999997542111
Q ss_pred ----------------------------------------EEcccCCCeEEEEEeCC-CCEEEEEecCCcEEEcC
Q 002495 882 ----------------------------------------TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 915 (915)
Q Consensus 882 ----------------------------------------~~~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~IWd 915 (915)
.-..|.++|+++++... -.+|++++.||.|+||+
T Consensus 1357 ~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1357 YDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00126778888887554 35899999999999996
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-16 Score=161.35 Aligned_cols=231 Identities=16% Similarity=0.277 Sum_probs=175.3
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCc------------eEEEeccCCCCeEEEEEc-------CCCCeEEEEEe
Q 002495 680 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGY------------SLRTFMGHSASVMSLDFH-------PNKDDLICSCD 740 (915)
Q Consensus 680 V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~------------~~~~~~~h~~~V~sl~fs-------p~~~~ll~s~s 740 (915)
...+.|+|||..|++-+.|..+.+|++..... ...........|+..+|. |+ ..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc-cceeeecc
Confidence 45679999999999999999999998853110 001111234567777776 33 45788999
Q ss_pred CCCcEEEEEcCCCeeEEEeec--------CceEEEEecCCCEEEEEEcCCeEEEEEC-CCceE--EEEec-----CCCCC
Q 002495 741 GDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAAAENVVSILDA-ETQAC--RLSLQ-----GHTKP 804 (915)
Q Consensus 741 ~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~sp~~~~ll~~~~dg~I~i~D~-~t~~~--~~~l~-----~h~~~ 804 (915)
.|.-|.+||.-+|+....+.. ...++.|+|++..|+++ ....|++||+ +.+.. +.... +..+.
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999998877753 34679999998887764 5689999999 55532 22222 23667
Q ss_pred eEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEE
Q 002495 805 IDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTM 881 (915)
Q Consensus 805 V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~-dg~I~iwd~~~~~~~ 881 (915)
|.+++|+|... .+++++.. .+-||.-... ..+..+.+|++.|+.+.|+++|+.|++|.. |..|.+||++..+..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~---~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCC---CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 99999999554 89999988 7777765444 567777799999999999999999999986 569999999876544
Q ss_pred --EEcccCC-CeEEEE--EeCCCCEEEEEecCCcEEEcC
Q 002495 882 --TLTAHEG-LIAALA--VSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 882 --~~~~h~~-~V~~l~--~spdg~~Lasgs~Dg~I~IWd 915 (915)
.+..|.+ .--.|- ..|++++|++|+.||.|++||
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD 325 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence 5666655 333444 468999999999999999997
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-16 Score=154.56 Aligned_cols=227 Identities=19% Similarity=0.264 Sum_probs=172.1
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCC---------CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 002495 679 LITDVRFSPSMPRLATSSFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 749 (915)
Q Consensus 679 ~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwd 749 (915)
.|.+-+|+|.+++|++|+.+|.|.++.+.+ ....+..+.+|.++|+.++|+. .+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence 466678999999999999999999998863 2234566689999999999993 3554666 69999998
Q ss_pred cCCCee----EEEe------------ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC
Q 002495 750 INNGSC----TRVF------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 813 (915)
Q Consensus 750 l~~~~~----~~~~------------~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd 813 (915)
.+.... .+.+ -..++.+...|..+.++.++.|+.++.||+++++...++++|.+.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 765422 1100 124567888999999999999999999999999999999999999999998555
Q ss_pred CCEEEEEeCC-eEEEEECCCCCCcceEEEecc-------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc
Q 002495 814 GELLASVSED-SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 885 (915)
Q Consensus 814 g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~-------~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~ 885 (915)
..-+++|++| ++||||+++.+....+...+. .+.+|.+++.+ ..+++ |+....+.+|+++..++.....
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlv-CGgGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLV-CGGGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEE-ecCCCceeEEeccCCCceEEEe
Confidence 5567889988 999999999865555444332 12345555544 33444 4555789999999999988888
Q ss_pred cCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 886 HEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 886 h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
-...|..+.|..| .+++++..+.|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 8888999998766 56667655555544
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-16 Score=176.42 Aligned_cols=257 Identities=17% Similarity=0.275 Sum_probs=185.8
Q ss_pred CcEEEEECCCCceeeEeccCCCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCce-----EEEeccCCCCeEEEEEcC
Q 002495 657 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHP 730 (915)
Q Consensus 657 g~V~vwd~~t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~iWdl~~~~~~-----~~~~~~h~~~V~sl~fsp 730 (915)
+.+.||+++..........-...|+|++|+| +..+||.|+.+|.|.+||++..... ......|..+|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4799999986533333334567899999999 5667888889999999999875442 123346889999999976
Q ss_pred CCCe-EEEEEeCCCcEEEEEcCCCeeE------EE---------eecCceEEEEecCC-CEEEEEEcCCeEEEEECCCc-
Q 002495 731 NKDD-LICSCDGDGEIRYWSINNGSCT------RV---------FKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQ- 792 (915)
Q Consensus 731 ~~~~-ll~s~s~Dg~I~iwdl~~~~~~------~~---------~~~~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~- 792 (915)
+... -|++++.||.|+.|+++.-... .. -...+..+.|.+.. ..+++|+.+|.|..-+....
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5333 2448888999999998764331 00 11245667888766 56788888898887443322
Q ss_pred -------eEEEEecCCCCCeEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE-EEE
Q 002495 793 -------ACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-LLV 863 (915)
Q Consensus 793 -------~~~~~l~~h~~~V~si~~spdg~-~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~-l~s 863 (915)
+....+..|.++|+++.++|-+. +++++++.+|+||.... ....+..+..+...+++++|+|.... |++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC--CCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 12335567899999999999776 44445533999999762 22456666666777999999998765 555
Q ss_pred EEcCCeEEEEECCCCcEE---EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 864 IGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 864 ~s~dg~I~iwd~~~~~~~---~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+..||.|.|||+...... ....+....+.+.|+++|++|++|...|.|+||+
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 566899999999765432 4444566778888899999999999999999985
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=166.00 Aligned_cols=200 Identities=19% Similarity=0.320 Sum_probs=160.3
Q ss_pred eEeecCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCC-------ceeeEeccCCCcEEEEEECCC-CCEEEEEeCCC
Q 002495 629 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPS-MPRLATSSFDK 699 (915)
Q Consensus 629 ~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~V~vwd~~t~-------~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg 699 (915)
-.+.+|+.+|..++|+| +...||+|+.|.+|.||.+... +.+..+.+|...|--|.|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35789999999999999 5579999999999999997632 457788999999999999994 45889999999
Q ss_pred eEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC----ceEEEEecCCCEE
Q 002495 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRY 775 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~~~l 775 (915)
+|.||++.+ ++.+.++. |.+-|++++|+.+|. +|++.+.|..|||||.++++.+..-..+ ...+.|..++. +
T Consensus 155 ~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccC-CceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 999999998 66666666 999999999999976 5669999999999999999988775432 24566777777 5
Q ss_pred EEEEc----CCeEEEEECCCce---EEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002495 776 LAAAA----ENVVSILDAETQA---CRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 833 (915)
Q Consensus 776 l~~~~----dg~I~i~D~~t~~---~~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~ 833 (915)
++++. +..+-+||....+ ...++. ....|.---|++|.++|+.++.+ .||.|.+...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 55443 6789999877643 223333 34556666788999988777765 8999999765
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=173.29 Aligned_cols=237 Identities=20% Similarity=0.291 Sum_probs=166.8
Q ss_pred ceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEec-cCCCcEEEEEECC--CCCEEEEEeCCCeE
Q 002495 625 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKTV 701 (915)
Q Consensus 625 ~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~-~h~~~V~~l~fsp--dg~~Lasgs~Dg~I 701 (915)
+.....+.+|++.|+|++|+.||.+|++|+.|-.|.|||.-..+.++.+. +|...|.++.|-| +++.+++|..|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 34456789999999999999999999999999999999988777777764 8999999999998 56789999999999
Q ss_pred EEEECCC---------CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-Ee------------
Q 002495 702 RVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VF------------ 759 (915)
Q Consensus 702 ~iWdl~~---------~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~-~~------------ 759 (915)
++||+.. .....+.+..|...|..|+..|++.+.|.++++||+|+-||++...... ..
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999985 2344567778999999999999998999999999999999998743211 11
Q ss_pred ecCceEEEEecCCCE-EEEEEcCCeEEEEECCCceEEEEecC-----CCCCeEEEE-EcCCCCEEEEEeCCeEEEEECCC
Q 002495 760 KGGTAQMRFQPHLGR-YLAAAAENVVSILDAETQACRLSLQG-----HTKPIDSVC-WDPSGELLASVSEDSVRVWTVGS 832 (915)
Q Consensus 760 ~~~~~~v~~sp~~~~-ll~~~~dg~I~i~D~~t~~~~~~l~~-----h~~~V~si~-~spdg~~Las~s~d~I~iwdl~s 832 (915)
-....++.++|...+ |++|+.|-..++||.+.......-.+ ......|+. |+|.+- ...+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~--------- 266 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQ--------- 266 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cCcc---------
Confidence 013356677776654 44556677788888543211100000 001111111 222110 0000
Q ss_pred CCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002495 833 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 881 (915)
Q Consensus 833 ~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~ 881 (915)
+ . +......++-+.|+|+|..|++.-....|++||+..++..
T Consensus 267 g---n----~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 267 G---N----LDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred c---c----cccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 0 0 0000112456789999999999888889999999887654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-14 Score=150.35 Aligned_cols=231 Identities=16% Similarity=0.293 Sum_probs=171.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCC--CeEEEEECCCCCce
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYS 712 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--g~I~iWdl~~~~~~ 712 (915)
...|..+.|..|...|..|+.|| .++|..+..............|.-.-|+. .++|..+.+ +.+++++++. +..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk-~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKK-KTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEccc-Cce
Confidence 45677888999999999999887 57787775544333333334455555654 466666554 4589999986 444
Q ss_pred EEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC----ceEEEEecCC--CEEEEEEc--CCeE
Q 002495 713 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHL--GRYLAAAA--ENVV 784 (915)
Q Consensus 713 ~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~----~~~v~~sp~~--~~ll~~~~--dg~I 784 (915)
+..+. ....|.+|.++.+ +++ ++-.+ .|+|||+++.+.+.++... ...+++++.. .+++.-+. .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 44333 5678999999854 344 55444 4999999999998887542 2234555544 45555433 6899
Q ss_pred EEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccC--CCceEEEEEeCCCCE
Q 002495 785 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPS 860 (915)
Q Consensus 785 ~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~--~~~i~~i~~spdg~~ 860 (915)
.|||+.+.+.+..+..|++.+-+++|+++|.+||++++. .||||.+.++ ..+.+++.. ...|.+++|++++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 999999999999999999999999999999999999998 7999999887 445555432 345889999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 002495 861 LLVIGCYQSLELWNMSE 877 (915)
Q Consensus 861 l~s~s~dg~I~iwd~~~ 877 (915)
|++.+..++|+||.++.
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998864
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=154.66 Aligned_cols=251 Identities=19% Similarity=0.264 Sum_probs=187.5
Q ss_pred eeeeEeecCCCCeEEEEEcC---CCCEEEEEEC----CCcEEEEECC--CCceeeEe-ccCCCcEEEEEECCCCC-----
Q 002495 626 KEANSVRASTSKVICCHFSS---DGKLLATGGH----DKKAVLWHTD--TLKSKTNL-EEHSSLITDVRFSPSMP----- 690 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~lafsp---dg~~Lasgs~----Dg~V~vwd~~--t~~~~~~l-~~h~~~V~~l~fspdg~----- 690 (915)
+++..+..+ -.++++.|+. ...+||.|+. .++|.|..++ +++.+..- ..|..+++.+-|.|+..
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 445555543 4688899984 3358888884 4677776554 44443332 36889999999999763
Q ss_pred EEEEEeCCCeEEEEECCCCCceEE--------EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC
Q 002495 691 RLATSSFDKTVRVWDADNPGYSLR--------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 762 (915)
Q Consensus 691 ~Lasgs~Dg~I~iWdl~~~~~~~~--------~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~ 762 (915)
+||+++ ..+|+|.+......+. .-..+..++++++|+.-..++|.+++-|-++.|||++++..
T Consensus 115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------- 185 (364)
T KOG0290|consen 115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------- 185 (364)
T ss_pred hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-------
Confidence 455543 4699999974221111 12246678999999988888998999999999999987611
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEE
Q 002495 763 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVH 840 (915)
Q Consensus 763 ~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~ 840 (915)
+.....+.+|++.|..|+|...+. +|++++.| .||+||++..+....+.
T Consensus 186 -----------------------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY 236 (364)
T KOG0290|consen 186 -----------------------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY 236 (364)
T ss_pred -----------------------------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe
Confidence 112234556999999999998655 88888888 99999999987777777
Q ss_pred EeccCCCceEEEEEeCCC-CEEEEEEcCC-eEEEEECCCCcEE--EEcccCCCeEEEEEeCCC-CEEEEEecCCcEEEcC
Q 002495 841 ELSCNGNKFHSCVFHPTY-PSLLVIGCYQ-SLELWNMSENKTM--TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 915 (915)
Q Consensus 841 ~~~~~~~~i~~i~~spdg-~~l~s~s~dg-~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~IWd 915 (915)
+-.....+...++|++.. +++++-..|. .|.|.|++..... ++.+|.+.|++|+|.|.. ..|+||++|..+.|||
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 776667788899998854 5677766664 8999999876543 889999999999999964 5899999999999997
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=168.63 Aligned_cols=267 Identities=15% Similarity=0.229 Sum_probs=194.2
Q ss_pred CCceEEEEcCCCceec--CCCCeeEeCCCchhhhhhhhhcccCCCCCceeeecccCCCCCCCCCCcccccccCccceeee
Q 002495 552 SKPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 629 (915)
Q Consensus 552 ~~~~~~fs~dg~~~~~--~~~~~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 629 (915)
..--++|.|||.-++. ++...|||+.+|. ...
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~----------------------------------------------llq 47 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGT----------------------------------------------LLQ 47 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcc----------------------------------------------ccc
Confidence 4456789999986554 4444567766553 245
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEec-cCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 630 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~ 708 (915)
++++|.+.|+||+|+.||+++|+|+.|+.|.||.-.- ...++ .|.+.|-|+.|+|-...|++++... .-+|..+.
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~q 123 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQ 123 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh-ccccChhh
Confidence 6889999999999999999999999999999997542 22222 6999999999999999999988643 67898875
Q ss_pred CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----cCceEEEEecCCC-----EEEEE
Q 002495 709 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLG-----RYLAA 778 (915)
Q Consensus 709 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~~sp~~~-----~ll~~ 778 (915)
+. +... .....|.+.+|..||.+ ++.|-.+|+|.|-+-...+.++.-. ..+..++|+|..+ .+.+.
T Consensus 124 K~--V~K~-kss~R~~~CsWtnDGqy-lalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~ 199 (1081)
T KOG1538|consen 124 KS--VSKH-KSSSRIICCSWTNDGQY-LALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA 199 (1081)
T ss_pred hh--HHhh-hhheeEEEeeecCCCcE-EEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE
Confidence 22 2111 23467888999999764 5588899999998765544444432 2467788988753 44555
Q ss_pred EcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002495 779 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 857 (915)
Q Consensus 779 ~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spd 857 (915)
....++.+|.+.. +.+..-+.-.-.-.|+.+.++|++++.|+.| .+.+|.-. | ..+.++.....+|+++..+|+
T Consensus 200 DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~PN 274 (1081)
T KOG1538|consen 200 DWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAKPN 274 (1081)
T ss_pred eccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEccC
Confidence 5566666666543 2222222222345688999999999998888 88888642 2 455555556889999999999
Q ss_pred CCEEEEEEcCCeEEEEECCC
Q 002495 858 YPSLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 858 g~~l~s~s~dg~I~iwd~~~ 877 (915)
+.++++|+.||+|..|++-.
T Consensus 275 sQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 275 SQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CceEEEEEccCeeehhhhHH
Confidence 99999999999999998743
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-16 Score=166.12 Aligned_cols=259 Identities=17% Similarity=0.290 Sum_probs=190.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEE-C-------CCCCEEEEEeCCCeEEEE
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-S-------PSMPRLATSSFDKTVRVW 704 (915)
Q Consensus 633 ~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~f-s-------pdg~~Lasgs~Dg~I~iW 704 (915)
.|...|.||.|+.....+.+++ |..+.+|.-.+......+....+.|....+ - .....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 5677788999998887776665 555555543332223222222222221111 0 123478888999999887
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee---EEEeecCceEEEEecCCCEEEEEEcC
Q 002495 705 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQMRFQPHLGRYLAAAAE 781 (915)
Q Consensus 705 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~---~~~~~~~~~~v~~sp~~~~ll~~~~d 781 (915)
+-. ++.-+.+..|.+.|.|-.|+|+|.-++ ++++||.|++|.-. |-. +..+...+.|++|.|+.+.++.+. .
T Consensus 91 ~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g 165 (737)
T KOG1524|consen 91 NKS--ARVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-G 165 (737)
T ss_pred ccc--chhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-C
Confidence 654 556677889999999999999998877 99999999999843 432 233456789999999988777654 4
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 860 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~ 860 (915)
+.+.|-.+.....+...+.|++-|.++.|++..+++++|++| ..+|||-- ...+..-..|+.+|++++|.|+ ..
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~----G~~Lf~S~~~ey~ITSva~npd-~~ 240 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ----GANLFTSAAEEYAITSVAFNPE-KD 240 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc----CcccccCChhccceeeeeeccc-cc
Confidence 567777777777778889999999999999999999999999 99999964 3556666778999999999999 44
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002495 861 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 913 (915)
Q Consensus 861 l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~I 913 (915)
+++++ .+++++ .....+.|..++|++||..++.|+..|.|.+
T Consensus 241 ~~v~S-~nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 241 YLLWS-YNTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeee-eeeeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 44444 344442 2234578999999999999999998887653
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-15 Score=169.47 Aligned_cols=279 Identities=17% Similarity=0.294 Sum_probs=208.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC----CCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 633 ~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~----t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~ 708 (915)
.|.-.++|+++||.++++|+|..||.|.||.-- .......+.-|...|.++.|+++|.+|++|+..|.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 467779999999999999999999999999632 2234566778999999999999999999999999999999998
Q ss_pred CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--------------cCceEEEEecCCCE
Q 002495 709 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------------GGTAQMRFQPHLGR 774 (915)
Q Consensus 709 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~--------------~~~~~v~~sp~~~~ 774 (915)
++ ...+..-.+.|..+.++||++.+. .+..|+.|.+....+.....++. +-...++++|..+.
T Consensus 283 ~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 283 GK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 44 455556778999999999987555 66669999998875544333222 12345788998889
Q ss_pred EEEEEcCCeEEEEECCCceEEEEecC-----CC------CCeEEEEEcCCCCEEEEEeC----------C-eEEEEECCC
Q 002495 775 YLAAAAENVVSILDAETQACRLSLQG-----HT------KPIDSVCWDPSGELLASVSE----------D-SVRVWTVGS 832 (915)
Q Consensus 775 ll~~~~dg~I~i~D~~t~~~~~~l~~-----h~------~~V~si~~spdg~~Las~s~----------d-~I~iwdl~s 832 (915)
++..+..+.|.+||+-+.+.+..+.. +. ..|+.++.+-.|.++++.-. . .+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 99999999999999988766655431 12 24677777778999888741 1 688998765
Q ss_pred CCCcceE--EEeccCCCceEEEEE-eCCCC-EEEEEEcCCeEEEEECCCCc----------EE-EEcccCCCeEEEEEeC
Q 002495 833 GSEGECV--HELSCNGNKFHSCVF-HPTYP-SLLVIGCYQSLELWNMSENK----------TM-TLTAHEGLIAALAVST 897 (915)
Q Consensus 833 ~~~~~~i--~~~~~~~~~i~~i~~-spdg~-~l~s~s~dg~I~iwd~~~~~----------~~-~~~~h~~~V~~l~~sp 897 (915)
......+ .....|+..+...++ ++... .+++++.||.++||-+...+ +. .-.-|..++++++|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 5432222 223456665555444 44333 79999999999999883321 11 1123788999999999
Q ss_pred CCCEEEEEecCCcEEEcC
Q 002495 898 ETGYVASASHDKFVKLWK 915 (915)
Q Consensus 898 dg~~Lasgs~Dg~I~IWd 915 (915)
||..| +++.|++|.|||
T Consensus 520 dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 520 DGSLL-AVSFDDTITIWD 536 (792)
T ss_pred CCcEE-EEecCCEEEEec
Confidence 99655 566788999997
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=158.32 Aligned_cols=254 Identities=15% Similarity=0.188 Sum_probs=183.4
Q ss_pred cceeeeEeecCCCCeEEEEEcC--CCCEEEEEECCCcEEEEECCCCceee--EeccCC-CcEEEEEECCCCCEEEEEeC-
Q 002495 624 SFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHS-SLITDVRFSPSMPRLATSSF- 697 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafsp--dg~~Lasgs~Dg~V~vwd~~t~~~~~--~l~~h~-~~V~~l~fspdg~~Lasgs~- 697 (915)
+.+.+..+++|...++.++|.. ....+.+|+.||+|++||+....... .+..+. .+..|++....+..+++|..
T Consensus 59 tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~ 138 (376)
T KOG1188|consen 59 TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTEL 138 (376)
T ss_pred chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccc
Confidence 4456677888888888999877 45789999999999999998654443 344555 56777877777888888854
Q ss_pred ---CCeEEEEECCCCCceEEE-eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe----eEEEee--cCceEEE
Q 002495 698 ---DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS----CTRVFK--GGTAQMR 767 (915)
Q Consensus 698 ---Dg~I~iWdl~~~~~~~~~-~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~----~~~~~~--~~~~~v~ 767 (915)
|-.|.+||++.....++. ...|.+.|++|+|+|....+|++|+.||.|.+||++... ++.++. ..+..+.
T Consensus 139 ~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~ig 218 (376)
T KOG1188|consen 139 TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIG 218 (376)
T ss_pred ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeee
Confidence 778999999986664544 457999999999999999999999999999999998653 223333 2356777
Q ss_pred EecCC-CEEEEEEcCCeEEEEECCCceEEEEecCCC------------CCeEEEEEcCCCCEEEEEeCC--eEEEEEC--
Q 002495 768 FQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHT------------KPIDSVCWDPSGELLASVSED--SVRVWTV-- 830 (915)
Q Consensus 768 ~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~------------~~V~si~~spdg~~Las~s~d--~I~iwdl-- 830 (915)
|..++ +++++.+...+..+|+++.+.++..+.... ..+.......++.+++.++.+ ...++-+
T Consensus 219 w~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~ 298 (376)
T KOG1188|consen 219 WLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVD 298 (376)
T ss_pred eecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeee
Confidence 87765 578899999999999999887655443221 111111112234455554443 5555443
Q ss_pred -CCCCCcceEEEecc-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002495 831 -GSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 831 -~s~~~~~~i~~~~~-~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~ 877 (915)
.++.....+..+.+ |...|.++.|.-.+..+++||.||.|.+|....
T Consensus 299 ~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 299 TSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred cccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 34444445555555 566688889998999999999999999998643
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-15 Score=154.28 Aligned_cols=283 Identities=14% Similarity=0.198 Sum_probs=213.2
Q ss_pred CCceEEEEcCCCceecCCCC---eeEeCCCchhhhhhhhhcccCCCCCceeeecccCCCCCCCCCCcccccccCccceee
Q 002495 552 SKPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 628 (915)
Q Consensus 552 ~~~~~~fs~dg~~~~~~~~~---~lwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 628 (915)
....+.|+.+|.++++++.. .||.++..-... +.+++
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k----------------------------------------~~KPI 97 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK----------------------------------------TPKPI 97 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHhhc----------------------------------------CCCCc
Confidence 34578889898888886655 678875432211 22333
Q ss_pred eEee-cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEecc--CCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 002495 629 NSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 629 ~~l~-~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~I~iWd 705 (915)
.... .|...|.|++|....++|++|+.+++|.+.|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||
T Consensus 98 ~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D 177 (609)
T KOG4227|consen 98 GVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFID 177 (609)
T ss_pred eeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEe
Confidence 3333 4568999999999999999999999999999999888777753 335899999999999999999999999999
Q ss_pred CCCCCceE--EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEE------eec---CceEEEEecCCC
Q 002495 706 ADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRV------FKG---GTAQMRFQPHLG 773 (915)
Q Consensus 706 l~~~~~~~--~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~-~~~------~~~---~~~~v~~sp~~~ 773 (915)
++.....+ ..+........++.|+|....||++.+..+.+-+||++.... +.. +.. .-..+.|++.++
T Consensus 178 ~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~ 257 (609)
T KOG4227|consen 178 NRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN 257 (609)
T ss_pred ccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC
Confidence 98643222 233345567888999999999999999999999999986532 111 111 124578999999
Q ss_pred EEEEEEcCCeEEEEECCCceEEEEecCCC-------CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC-----------
Q 002495 774 RYLAAAAENVVSILDAETQACRLSLQGHT-------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGS----------- 834 (915)
Q Consensus 774 ~ll~~~~dg~I~i~D~~t~~~~~~l~~h~-------~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~----------- 834 (915)
.+++.-....-.+||+.+..|......|. ..|.+++|..|.. +++|+++ .|++|.+....
T Consensus 258 Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~ 336 (609)
T KOG4227|consen 258 QFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHD 336 (609)
T ss_pred eehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcc
Confidence 99988887788889988855443333332 3467788876544 8899999 99999885321
Q ss_pred ---------CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002495 835 ---------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 835 ---------~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~ 875 (915)
..+.+..+++|...+..+.|++....|++.+-.+.|+||.-
T Consensus 337 ~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 337 EEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred hhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 01234567889999999999999999999999999999954
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=150.30 Aligned_cols=276 Identities=15% Similarity=0.250 Sum_probs=191.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEecc-CCCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCce
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYS 712 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~-h~~~V~~l~fspd-g~~Lasgs~Dg~I~iWdl~~~~~~ 712 (915)
+-.+..++|++.-..+|++..|-.|+|||-.. ++...++. ....|+|++|-|. ++.|++|+..| |+||..+.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 44678899999777889999999999999765 44555543 3467999999994 45788888666 999987642211
Q ss_pred -------------EEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---ecCceEEEEecCCCEEE
Q 002495 713 -------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYL 776 (915)
Q Consensus 713 -------------~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll 776 (915)
+....+| ..|+++.|.+|+..++-++-.|..|.|||..++.++... .+++.-+.|+|++.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 1222344 689999999998877755556889999999999877654 24667899999999999
Q ss_pred EEEcCCeEEEEE-CCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc------------ceEEEec
Q 002495 777 AAAAENVVSILD-AETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEG------------ECVHELS 843 (915)
Q Consensus 777 ~~~~dg~I~i~D-~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~------------~~i~~~~ 843 (915)
++..|+..++|. ..+..+..-.. ..+.|...+|+|+|++|+..+.+.-+||.+.-..+. ..+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 999999999994 44444443333 344899999999999877777665555554322110 1111111
Q ss_pred ---------cCCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCcEEEEc--c--cCCCeEEEEEeC---CC
Q 002495 844 ---------CNGNKFHSCVFHPTYPSLLVIGCYQ--------SLELWNMSENKTMTLT--A--HEGLIAALAVST---ET 899 (915)
Q Consensus 844 ---------~~~~~i~~i~~spdg~~l~s~s~dg--------~I~iwd~~~~~~~~~~--~--h~~~V~~l~~sp---dg 899 (915)
...+++.+++|+|.|.++++.-..+ .|.+||.+....+.+. + ....-..|+|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 1256788999999999999986544 4778888776655333 1 111244555654 45
Q ss_pred CEEEEEecCCcEEEc
Q 002495 900 GYVASASHDKFVKLW 914 (915)
Q Consensus 900 ~~Lasgs~Dg~I~IW 914 (915)
.+|..|=..|.|.-|
T Consensus 414 ~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRY 428 (445)
T ss_pred cEEEEEeccCceEee
Confidence 566666666766543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-15 Score=172.07 Aligned_cols=244 Identities=20% Similarity=0.300 Sum_probs=185.1
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCce--eeE----eccCCCcEEEEEECCCC--CEEEEEeCCCeEEEE
Q 002495 634 STSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTN----LEEHSSLITDVRFSPSM--PRLATSSFDKTVRVW 704 (915)
Q Consensus 634 H~~~V~~lafsp-dg~~Lasgs~Dg~V~vwd~~t~~~--~~~----l~~h~~~V~~l~fspdg--~~Lasgs~Dg~I~iW 704 (915)
....|+|++|+| +..+||.|+++|.|.+||+..+.. ... ...|..+|+.+.|..+. ..|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 356899999999 567889999999999999986554 222 23689999999997754 459999999999999
Q ss_pred ECCCCCceEE-----Eec------cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC---CCe-----eE---EEeecC
Q 002495 705 DADNPGYSLR-----TFM------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN---NGS-----CT---RVFKGG 762 (915)
Q Consensus 705 dl~~~~~~~~-----~~~------~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~---~~~-----~~---~~~~~~ 762 (915)
+++.-..+.. ... .-...+++++|.+.....|+.|+++|.|..-+.. ... .. ..+.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 9875322111 111 2235689999999888888899999999873322 222 01 112345
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECC-CceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceE
Q 002495 763 TAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECV 839 (915)
Q Consensus 763 ~~~v~~sp~~~~ll~~~~dg~I~i~D~~-t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i 839 (915)
+..+.++|-...++.++.|.+|+||... ...++..+..+...|++++|+|... .|+++..+ .|.|||+..... ..+
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPV 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCc
Confidence 6778899999888888889999999988 7788888888888899999999776 56666656 999999976543 333
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002495 840 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 878 (915)
Q Consensus 840 ~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~ 878 (915)
.....+......+.|++.++.|++|...|.|++|++...
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 334344566777788889999999999999999999653
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-15 Score=150.15 Aligned_cols=225 Identities=16% Similarity=0.261 Sum_probs=173.6
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC---CceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 630 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl 706 (915)
.++.-..+|+|.+|++|+..+|++.....|.||.... .+..+++..|...|++|+|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 3444567899999999999999999999999998763 5678899999999999999999999999999999999999
Q ss_pred CCCC--ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-------EEEeecCceEEEEecCCCEEEE
Q 002495 707 DNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-------TRVFKGGTAQMRFQPHLGRYLA 777 (915)
Q Consensus 707 ~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~-------~~~~~~~~~~v~~sp~~~~ll~ 777 (915)
..++ +....+..+...+++|.|+|.++ .|++|+.-..|.||-++...- .+.++..+.++.|+|.+-.+++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 5433 33455667889999999999865 667999889999988775432 2334556789999999999999
Q ss_pred EEcCCeEEEEEC-----CC-------------ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 002495 778 AAAENVVSILDA-----ET-------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 838 (915)
Q Consensus 778 ~~~dg~I~i~D~-----~t-------------~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~ 838 (915)
|+.|+.++||.. ++ +..+.++....+.|..+.|+|+|..|+-.+.| .|.+-|.....+ .
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--R 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--h
Confidence 999999988853 21 12333444456789999999999999999999 888888765432 2
Q ss_pred EEEeccCCCceEEEEEeCC
Q 002495 839 VHELSCNGNKFHSCVFHPT 857 (915)
Q Consensus 839 i~~~~~~~~~i~~i~~spd 857 (915)
+.......-+..++.|-.+
T Consensus 242 v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISE 260 (361)
T ss_pred ccchhhccCCceeeEeecC
Confidence 2222222345555555443
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-15 Score=162.01 Aligned_cols=231 Identities=20% Similarity=0.363 Sum_probs=164.5
Q ss_pred cCCCCEEEE--EECCCcEEEEECCC-CceeeE-ec--cCCCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCC------
Q 002495 644 SSDGKLLAT--GGHDKKAVLWHTDT-LKSKTN-LE--EHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------ 710 (915)
Q Consensus 644 spdg~~Las--gs~Dg~V~vwd~~t-~~~~~~-l~--~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~iWdl~~~~------ 710 (915)
+.+.+++|+ ++..|.|.||++.. ++.-.. +. .....|+++.|.| |...|+++++||.|++|.+..++
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~ 667 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM 667 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC
Confidence 334555554 45678999999873 332221 11 2456799999999 77899999999999999997543
Q ss_pred ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 790 (915)
Q Consensus 711 ~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 790 (915)
.....+++|...|++|.|+|-...+|++++.|.+|++||+.+++.
T Consensus 668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~----------------------------------- 712 (1012)
T KOG1445|consen 668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL----------------------------------- 712 (1012)
T ss_pred CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----------------------------------
Confidence 345678899999999999998778888999999999888876543
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEecc-CCCceEEEEEeCCCCEEEEEEcCC
Q 002495 791 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ 868 (915)
Q Consensus 791 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~-~~~~i~~i~~spdg~~l~s~s~dg 868 (915)
...+.+|.+.|..++|+|+|+.+++.+.| +|+||+-+++.. .+.+-++ .+..-..|.|.-+|+++++.+.|.
T Consensus 713 ----~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~--pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 713 ----YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ--PVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred ----hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC--ccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 23456799999999999999999999999 999999987643 3333222 133455678999999999999875
Q ss_pred ----eEEEEECCCCcE--E-EE-cccCCCeEEEEEeCCCC-EEEEEecCCcEEEcC
Q 002495 869 ----SLELWNMSENKT--M-TL-TAHEGLIAALAVSTETG-YVASASHDKFVKLWK 915 (915)
Q Consensus 869 ----~I~iwd~~~~~~--~-~~-~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~IWd 915 (915)
.|.+||..+-.. + +. ....-.+.--.+.+|.. +|++|-.|..|.+|.
T Consensus 787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 688888765331 1 11 01111111112344444 466777788888763
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=167.98 Aligned_cols=230 Identities=17% Similarity=0.183 Sum_probs=162.7
Q ss_pred CCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCC---CeEEEEECCCCCc-eEEEeccCCCCeEEEEEcCC
Q 002495 656 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN 731 (915)
Q Consensus 656 Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~iWdl~~~~~-~~~~~~~h~~~V~sl~fsp~ 731 (915)
+..|+|||.+... ...+..|...|.+++|+|||++|+.++.+ ..|++||+.+... .+..+.+| ..+++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999987554 56677788899999999999999988754 3699999986322 23333333 446899999
Q ss_pred CCeEEEEEeCCCcEEEE--EcCCCeeEEEee--cCceEEEEecCCCEEEEEEc-CCeEEEEECC--CceEEEEecCCCCC
Q 002495 732 KDDLICSCDGDGEIRYW--SINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAE--TQACRLSLQGHTKP 804 (915)
Q Consensus 732 ~~~ll~s~s~Dg~I~iw--dl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~-dg~I~i~D~~--t~~~~~~l~~h~~~ 804 (915)
+..++++.+.+|.+.|| |+.++....... .......|+|++..+++++. ++.+.||++. .+.. ..+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC-
Confidence 99888777778876555 666665443322 23467899999998777664 6777777654 3322 222 3333
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC---CCCcEE
Q 002495 805 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM---SENKTM 881 (915)
Q Consensus 805 V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~---~~~~~~ 881 (915)
.++.|+|||++|+..+.+.+.+||+.++... .+ ... .....+.|+|++++|++++.++.+.+|++ ......
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~-~l--t~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVKQDLTSGSTE-VL--SST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEEEECCCCCeE-Ee--cCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 4578999999998888787778999876421 11 111 12356789999999999999987777664 333444
Q ss_pred EEcccCCCeEEEEEeCC
Q 002495 882 TLTAHEGLIAALAVSTE 898 (915)
Q Consensus 882 ~~~~h~~~V~~l~~spd 898 (915)
.+..|.+.+..++|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 77788899999999984
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-16 Score=166.16 Aligned_cols=261 Identities=18% Similarity=0.290 Sum_probs=208.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEe
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 716 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~ 716 (915)
.-+.+.|+.+|++|+.|+..|.|..+|+.++++...+.. ...|.++.|..+..+||++- ...++|||-. +..+..+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEeeh
Confidence 457789999999999999999999999999988888764 45699999998888887775 5679999876 5667777
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---cCceEEEEecCCCEEEEEEcCCeEEEEECCCce
Q 002495 717 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 793 (915)
Q Consensus 717 ~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~ 793 (915)
+.| ..|..+.|.|. .+||++++..|.++.-|+.+|+.+..+. +.+..++-+|.+..+-+|...|+|.+|.....+
T Consensus 207 k~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 755 55888999997 5788899999999999999999887765 455667888999999999999999999999999
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 002495 794 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 872 (915)
Q Consensus 794 ~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~i 872 (915)
++..+.+|.++|.+|++.++|.|+++.+.| .|+|||++.... +..+.. ......++++-.| +++++....|.|
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q---l~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ---LHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc---cceeec-CCCcccccccccc--ceeeecCCeeee
Confidence 999999999999999999999999999999 999999987643 333322 3455666777655 666777778999
Q ss_pred E-ECCCCc---EEEEc--ccCCCeEEEEEeCCCCEEEEEecCC
Q 002495 873 W-NMSENK---TMTLT--AHEGLIAALAVSTETGYVASASHDK 909 (915)
Q Consensus 873 w-d~~~~~---~~~~~--~h~~~V~~l~~spdg~~Lasgs~Dg 909 (915)
| |...+. ...+. ...+.|..+.|.|-..+|..|-..|
T Consensus 359 w~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 359 WKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred ehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 9 333311 11222 2345899999999877776665544
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-14 Score=147.65 Aligned_cols=228 Identities=13% Similarity=0.162 Sum_probs=171.1
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCe
Q 002495 677 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGS 754 (915)
Q Consensus 677 ~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~D--g~I~iwdl~~~~ 754 (915)
...|..+.|+.+...|..|+.|| .++|..+.-+++ .........|..+-|+.. |+|..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-FSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh-hcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 44577788999999999999998 688888763332 222223345666777743 55555444 459999998887
Q ss_pred eEEEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCC---CCCeEEEEEcCCCCEEEEEe-CC--eEE
Q 002495 755 CTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH---TKPIDSVCWDPSGELLASVS-ED--SVR 826 (915)
Q Consensus 755 ~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h---~~~V~si~~spdg~~Las~s-~d--~I~ 826 (915)
.+..+. ..+.+|++. .++++++-.+. |+|||+++-+.++++..- ...+..+.+++.+.||+.-+ .+ .|.
T Consensus 80 ~ICe~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 665554 444555554 45666666555 999999999999888653 34466666666666887643 33 899
Q ss_pred EEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcc--cCCCeEEEEEeCCCCEE
Q 002495 827 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYV 902 (915)
Q Consensus 827 iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg-~I~iwd~~~~~~~-~~~~--h~~~V~~l~~spdg~~L 902 (915)
|||+.+. ..+..+..|.+.+.+++|+++|.+|++++..| .||||.+.++..+ .+.. ....|.+++|++++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999765 67788889999999999999999999999999 5799999999887 4443 24578899999999999
Q ss_pred EEEecCCcEEEcC
Q 002495 903 ASASHDKFVKLWK 915 (915)
Q Consensus 903 asgs~Dg~I~IWd 915 (915)
++.+..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999986
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-13 Score=151.36 Aligned_cols=264 Identities=13% Similarity=0.127 Sum_probs=175.3
Q ss_pred EE-EEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEE
Q 002495 649 LL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 727 (915)
Q Consensus 649 ~L-asgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~ 727 (915)
++ ++-..++.|.|.|.++.+.+.++......-..+.|++|++++++++.||.|.++|+.+ .+.+..+... ....+++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G-~~~~~i~ 84 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVG-GNPRGIA 84 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-S-SEEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecC-CCcceEE
Confidence 44 4455689999999999999999987665555688999999999999999999999998 6677777643 4567899
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC----------ceEEEEecCCCEEEEEEcC-CeEEEEECCCceEE-
Q 002495 728 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----------TAQMRFQPHLGRYLAAAAE-NVVSILDAETQACR- 795 (915)
Q Consensus 728 fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~----------~~~v~~sp~~~~ll~~~~d-g~I~i~D~~t~~~~- 795 (915)
+++||+++++++..++.|.++|.++.+.++.+... +..+..++....+++.-.| +.|.+.|....+.+
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 99999999988889999999999999988877532 2345667777777776665 89999998765433
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC--------------------------------------
Q 002495 796 LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE-------------------------------------- 835 (915)
Q Consensus 796 ~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~-------------------------------------- 835 (915)
.+............|+|+++|++++... .|-++|..+++.
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 2333345667889999999988776433 677777655411
Q ss_pred --------------cceEEEeccCCCceEEEEEeCCCCEEEEE---Ec-CCeEEEEECCCCcEEEEcc--cCCCeEEEEE
Q 002495 836 --------------GECVHELSCNGNKFHSCVFHPTYPSLLVI---GC-YQSLELWNMSENKTMTLTA--HEGLIAALAV 895 (915)
Q Consensus 836 --------------~~~i~~~~~~~~~i~~i~~spdg~~l~s~---s~-dg~I~iwd~~~~~~~~~~~--h~~~V~~l~~ 895 (915)
.+.+..+...+.. .-+..||+++++++. +. .+.|.|+|..+.+.+.... -...+..+.|
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef 323 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF 323 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred cccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence 1111222222222 445679999999998 33 4699999999998764332 2235999999
Q ss_pred eCCCCEEEEEecCC--cEEEcC
Q 002495 896 STETGYVASASHDK--FVKLWK 915 (915)
Q Consensus 896 spdg~~Lasgs~Dg--~I~IWd 915 (915)
+++|+++..+..|+ .|.|||
T Consensus 324 ~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp -TTSSEEEEEEE--TTEEEEEE
T ss_pred CCCCCEEEEEEecCCCEEEEEE
Confidence 99999766655443 588886
|
... |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-14 Score=165.40 Aligned_cols=223 Identities=15% Similarity=0.191 Sum_probs=158.9
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCce--eeEeccCCCcEEEEEECCCCCEEEEEe-CCCeE
Q 002495 628 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSS-FDKTV 701 (915)
Q Consensus 628 ~~~l~~H~~~V~~lafspdg~~Lasgs~D---g~V~vwd~~t~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I 701 (915)
...+..|...|.+++|+|||+.||.++.+ ..|++||+.+++. +..+.+| ..+++|+|||+.|++++ .+|.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence 34566788899999999999999988754 3699999987753 3333343 44689999999988765 58876
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEeecCceEEEEecCCCEEEEEEc
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~-~~~~~~~~~~~v~~sp~~~~ll~~~~ 780 (915)
.||.++..+..+..+..+...+.++.|+|++..+++++..+|.+.||+++... ....+........|+|++..+++++.
T Consensus 273 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 273 NIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMING 352 (429)
T ss_pred EEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcC
Confidence 66644322334566667777888999999999888777778888888875422 22222222245779999999888777
Q ss_pred CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002495 781 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 857 (915)
Q Consensus 781 dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spd 857 (915)
++ +.+||+.+++.......+ ...++.|+|+|++|++++.+ .+.+|++.+. ...++..+..+...+..++|+|-
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCCCCCcccCCC
Confidence 54 566999988765433222 34567899999999988877 7777776421 22566677777777888899885
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=141.75 Aligned_cols=269 Identities=14% Similarity=0.211 Sum_probs=194.7
Q ss_pred CCeEEEEEcCCCCEEEE-EECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCceE
Q 002495 636 SKVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSL 713 (915)
Q Consensus 636 ~~V~~lafspdg~~Las-gs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~I~iWdl~~~~~~~ 713 (915)
+.|.-|.|..|..++++ ...|+.|.+|++...+-...+......+..++|+|||+. |.+...|-.|.||.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-- 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-- 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--
Confidence 45667778777765554 467889999999988888888888899999999999965 55666699999999987332
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeC-----------------------------------CCcEEEEEcCCCeeEEE
Q 002495 714 RTFMGHSASVMSLDFHPNKDDLICSCDG-----------------------------------DGEIRYWSINNGSCTRV 758 (915)
Q Consensus 714 ~~~~~h~~~V~sl~fsp~~~~ll~s~s~-----------------------------------Dg~I~iwdl~~~~~~~~ 758 (915)
..+.-....+..++|+++|....+..-. ++.+.+||.--.-.+..
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 2233334456788899987654322211 23344555332222222
Q ss_pred ee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEE---------------------------------------
Q 002495 759 FK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS--------------------------------------- 797 (915)
Q Consensus 759 ~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~--------------------------------------- 797 (915)
++ .++..+.|+|.+..+.+|+.|+.++|.+--+.+...+
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 32 3667789999999999999999888865332211110
Q ss_pred ---------------------ec------CCCCCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEeccCCC
Q 002495 798 ---------------------LQ------GHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGN 847 (915)
Q Consensus 798 ---------------------l~------~h~~~V~si~~spdg~~Las~s~d---~I~iwdl~s~~~~~~i~~~~~~~~ 847 (915)
++ ...-.+.-++|++|..++++-.+. .+-+||++..+. +.+-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l----~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL----HAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh----hhhhhhcc
Confidence 00 001124568999999999998877 689999976532 22223367
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCc
Q 002495 848 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 910 (915)
Q Consensus 848 ~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~ 910 (915)
+|....|+|....++++.....+++|......++......-.|..+.|.-+|..|+.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999998888877777789999999999999999998864
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-13 Score=156.99 Aligned_cols=272 Identities=24% Similarity=0.264 Sum_probs=196.6
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCC---EEEEEeCCCeEEEEECCCCCceEEE
Q 002495 639 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSSFDKTVRVWDADNPGYSLRT 715 (915)
Q Consensus 639 ~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~---~Lasgs~Dg~I~iWdl~~~~~~~~~ 715 (915)
..-.||+|+++|+... +..|.||.+.++.++..+++|..+++.+.+.+... ++++++.||+|++||... +..+++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~-~~Llkt 97 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD-GELLKT 97 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC-cEEEEE
Confidence 3446899999888776 56999999999999999999999999999988544 678999999999999997 677777
Q ss_pred eccCCCCeEEEEEcCC---CCeEEEEEeCCCcE-EEEEcCCCeeEEE-----e--------ecC--ceEEEEecCCCEEE
Q 002495 716 FMGHSASVMSLDFHPN---KDDLICSCDGDGEI-RYWSINNGSCTRV-----F--------KGG--TAQMRFQPHLGRYL 776 (915)
Q Consensus 716 ~~~h~~~V~sl~fsp~---~~~ll~s~s~Dg~I-~iwdl~~~~~~~~-----~--------~~~--~~~v~~sp~~~~ll 776 (915)
+..+ ..|..+.+.|. ..-.+..+..|..+ .....+..+..+. + +.. ..++.+++. +.+.
T Consensus 98 ~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~-ge~~ 175 (792)
T KOG1963|consen 98 FDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS-GEFK 175 (792)
T ss_pred EecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC-ceEE
Confidence 7643 33444433221 11111112212111 1111111111111 0 111 234444444 5555
Q ss_pred EEEcCCeEEEEECCCceEEE----EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC-CCCcceEEEeccCCCceE
Q 002495 777 AAAAENVVSILDAETQACRL----SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-GSEGECVHELSCNGNKFH 850 (915)
Q Consensus 777 ~~~~dg~I~i~D~~t~~~~~----~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s-~~~~~~i~~~~~~~~~i~ 850 (915)
....+..+.+|+..++.... .-..|...+++.+++|++++++++..| .|.+|.--. .........+.-|...|.
T Consensus 176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~ 255 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN 255 (792)
T ss_pred EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence 66667788888887754111 112366678999999999999999998 999996433 334455667788899999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 851 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 851 ~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
+++|+++|.+|++||..+.+.+|.+.+++...+..-.++|..+.++||+.+.+....|+.|.+-
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 9999999999999999999999999999977888889999999999999999999999998864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-13 Score=154.67 Aligned_cols=232 Identities=14% Similarity=0.145 Sum_probs=167.0
Q ss_pred CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeC---CCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCC
Q 002495 657 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 733 (915)
Q Consensus 657 g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 733 (915)
..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+. +..|++||+.+ +.. +.+......+..++|+|||+
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~-~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCe-EEccCCCCCcCCeEECCCCC
Confidence 3788999875543 444556778999999999999987653 45799999986 432 22233334455689999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeEEEeec--CceEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEecCCCCCeE
Q 002495 734 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 806 (915)
Q Consensus 734 ~ll~s~s~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~ 806 (915)
.++++.+.+| .|++||+++++....... ......|+|++..++.++.+ + .|+++|+.+++.. .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766665 589999998876655433 34678899999988877764 3 5666687776543 3333444566
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 002495 807 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 879 (915)
Q Consensus 807 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg---~I~iwd~~~~~ 879 (915)
+.+|+|||++|+..+.+ .|++||+.++.. . .+.. ........|+|||++|+.++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~---~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q---VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe-E---EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 78999999988776543 588999977632 2 2221 12234678999999999999876 47888987777
Q ss_pred EEEEcccCCCeEEEEEeC
Q 002495 880 TMTLTAHEGLIAALAVST 897 (915)
Q Consensus 880 ~~~~~~h~~~V~~l~~sp 897 (915)
...+.+|.+.+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 777888999999999987
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-14 Score=154.20 Aligned_cols=242 Identities=15% Similarity=0.195 Sum_probs=162.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCc----eeeEeccCCCcEEEEEE-----CCCCCEEEEEeCCCeEEEEECC
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNLEEHSSLITDVRF-----SPSMPRLATSSFDKTVRVWDAD 707 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~----~~~~l~~h~~~V~~l~f-----spdg~~Lasgs~Dg~I~iWdl~ 707 (915)
.++...++-.|++|+..- ...++||+...+. .+....-.....+|-+| .+++--|+.|-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 455555666677776653 3478888876321 11111111222344444 3356678888888999998876
Q ss_pred CCCceEEEec----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceE--EEEecCCCEEEEEEcC
Q 002495 708 NPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ--MRFQPHLGRYLAAAAE 781 (915)
Q Consensus 708 ~~~~~~~~~~----~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~--v~~sp~~~~ll~~~~d 781 (915)
. ....+.+. -....|+||.|.|.++.+|+++-.+|.+++||.+. ...... ....+++..+......
T Consensus 204 ~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 N-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred h-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5 22211111 13478999999999888998999999999999721 111111 1122222222221110
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCE
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 860 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~ 860 (915)
...+..++..+..-...|+.++|+|||++||+.+.| .+||||+.+. +.+...+.--+...||+|+|||+|
T Consensus 276 ------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 ------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred ------ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 111223444444445689999999999999999999 9999999765 334444444677999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002495 861 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 896 (915)
Q Consensus 861 l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 896 (915)
|++|+.|.-|.||.+.+++++ .-.+|.+.|..|+|+
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999998 678999999999998
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=150.37 Aligned_cols=275 Identities=14% Similarity=0.165 Sum_probs=203.6
Q ss_pred cCCCCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc
Q 002495 633 ASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 711 (915)
Q Consensus 633 ~H~~~V~~lafspdg~~L-asgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~ 711 (915)
+|...-+.|..+|||+|| |||.+--.|++||+........-......|.-+.++.|-..++.-..|.+|-+..-.. .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence 467778899999999865 5666788999999987665554444456677777777777777777888887765432 1
Q ss_pred eEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---cCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002495 712 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 788 (915)
Q Consensus 712 ~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~dg~I~i~D 788 (915)
...+ . -.....+++++.-...++ .++....|+-++++.|..+..|. +.+.++.+++..+.|++|+.+|.|.+||
T Consensus 127 hy~~-R-IP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 127 HYRT-R-IPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eeee-e-cCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 1111 1 123344566665544565 45556789999999999888775 4567888999989999999999999999
Q ss_pred CCCceEEEEecC------CCC-----CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeC
Q 002495 789 AETQACRLSLQG------HTK-----PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 856 (915)
Q Consensus 789 ~~t~~~~~~l~~------h~~-----~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 856 (915)
.++...+.++.. |.. .|+++.|+.+|-.+++|+.. .|.|||+++... .+..-.....+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence 998866655542 222 39999999999999999888 999999998642 2233334466788888877
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 857 TYPS-LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 857 dg~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
.+.. .++......++|||-.+++.+........|+.+|+-|++.++++|.+++.+..|
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6333 333344468999999999999777777779999999999999999988776543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=152.88 Aligned_cols=191 Identities=24% Similarity=0.290 Sum_probs=151.7
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEec-
Q 002495 639 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM- 717 (915)
Q Consensus 639 ~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~- 717 (915)
.+++|+.+|..|++|+.||++|||++.....+..+..|...|.++.|+||++.|++-+.| ..+||++++ +..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~-g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT-GAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc-CchhhhcCC
Confidence 789999999999999999999999999888888888999999999999999999999999 899999998 44443333
Q ss_pred -cCCCCeEEEEEcCCC---Ce-EEEEEeCCCcEEEEEcCCCee---EE---Ee--ecCceEEEEecCCCEEEEEEcCCeE
Q 002495 718 -GHSASVMSLDFHPNK---DD-LICSCDGDGEIRYWSINNGSC---TR---VF--KGGTAQMRFQPHLGRYLAAAAENVV 784 (915)
Q Consensus 718 -~h~~~V~sl~fsp~~---~~-ll~s~s~Dg~I~iwdl~~~~~---~~---~~--~~~~~~v~~sp~~~~ll~~~~dg~I 784 (915)
.....+..+.|.-++ .. +++....-+.|+.||+...+. ++ .. ...+.++.++.+++.++.++.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233445567787664 22 333334456677766643322 11 11 2367889999999999999999999
Q ss_pred EEEECCCceEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC
Q 002495 785 SILDAETQACRLSL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 831 (915)
Q Consensus 785 ~i~D~~t~~~~~~l-~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~ 831 (915)
.|++..+.+++..+ +.|...|+.+.|+||.+++++.+.+ .+.|..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999998777655 4699999999999999999998888 77777664
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=159.92 Aligned_cols=252 Identities=20% Similarity=0.307 Sum_probs=188.7
Q ss_pred CCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccC---CCCeEEEEEcC-C
Q 002495 656 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH---SASVMSLDFHP-N 731 (915)
Q Consensus 656 Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h---~~~V~sl~fsp-~ 731 (915)
+..|..||... ..+....-..+.|+|-...|+++.....|+|||.+. +..+..|..+ ...|+.+++.. +
T Consensus 1049 t~~i~~W~~~~------~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~-~~~l~~F~n~~~~~t~Vs~l~liNe~ 1121 (1387)
T KOG1517|consen 1049 TNPIGNWDQKF------MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEK-GRLLNGFDNGAFPDTRVSDLELINEQ 1121 (1387)
T ss_pred cccccchHHHH------HhcCCCCCceeeecCCCceeEEcCCcceEEEEeccc-CceeccccCCCCCCCccceeeeeccc
Confidence 34577787541 112223556678888888999998888999999997 6666666543 35788888754 3
Q ss_pred CCeEEEEEeCCCcEEEEEcCC-----CeeEEEee----------cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEE
Q 002495 732 KDDLICSCDGDGEIRYWSINN-----GSCTRVFK----------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 796 (915)
Q Consensus 732 ~~~ll~s~s~Dg~I~iwdl~~-----~~~~~~~~----------~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~ 796 (915)
+..++++|+.||.||||+--. .+.+..+. +....+.|.-..+++++++.-..|+|||.....++.
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 455778999999999997422 23333321 112346677888999999999999999999988777
Q ss_pred EecC-CCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc--eEEEEEeCCCC-EEEEEEcCCeE
Q 002495 797 SLQG-HTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYP-SLLVIGCYQSL 870 (915)
Q Consensus 797 ~l~~-h~~~V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~--i~~i~~spdg~-~l~s~s~dg~I 870 (915)
.+.. ....|+++.-+- .|++|++|..| .|++||.+.......+...+.|... |..+.+-+.|- .|++|+.+|.|
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 6653 344567665433 47899999999 9999999988776677777777777 99999988654 59999999999
Q ss_pred EEEECCCCcEE---EEcccC--C-CeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 871 ELWNMSENKTM---TLTAHE--G-LIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 871 ~iwd~~~~~~~---~~~~h~--~-~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
++||++..... .+..|. + .++++..+++..+||+|+. +.|+||+
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 99999984322 444444 4 5999999999999999998 9999996
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=140.66 Aligned_cols=226 Identities=16% Similarity=0.306 Sum_probs=177.5
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc
Q 002495 673 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 750 (915)
Q Consensus 673 l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~--~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl 750 (915)
+..-..+|+|.+|++|...+|++.....|.||...... +...++..|...|++|+|.|..++++ +|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCcccccc
Confidence 33445789999999999999999999999999987644 56788999999999999999987765 9999999999999
Q ss_pred C-CCe-----eEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCce----EEEEecCCCCCeEEEEEcCCCCEEEEE
Q 002495 751 N-NGS-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSGELLASV 820 (915)
Q Consensus 751 ~-~~~-----~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~----~~~~l~~h~~~V~si~~spdg~~Las~ 820 (915)
. .++ .+..+.....++.|+|..+.|++++....|.||-.+... ..+.-+.+.+.|+++.|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4 333 344566788999999999999999999999998776542 222334467889999999999999999
Q ss_pred eCC-eEEEEEC-----CCCC----------CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--EEE
Q 002495 821 SED-SVRVWTV-----GSGS----------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMT 882 (915)
Q Consensus 821 s~d-~I~iwdl-----~s~~----------~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~--~~~ 882 (915)
+.| ..|||.. +... -...+.++....+.+..+.|+|.|..|+..+.|..|.+-|..... ...
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999 8888853 2110 112334454567889999999999999999999999999987765 333
Q ss_pred EcccCCCeEEEEEeCCC
Q 002495 883 LTAHEGLIAALAVSTET 899 (915)
Q Consensus 883 ~~~h~~~V~~l~~spdg 899 (915)
.....-+..++.|-.+.
T Consensus 245 ~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISEN 261 (361)
T ss_pred hhhccCCceeeEeecCC
Confidence 33333667777775443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=144.43 Aligned_cols=261 Identities=13% Similarity=0.189 Sum_probs=195.4
Q ss_pred cCCCCeEEEEEcCCC--CEEEEEECCCcEEEEECCCCceeeE------eccCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q 002495 633 ASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLKSKTN------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 704 (915)
Q Consensus 633 ~H~~~V~~lafspdg--~~Lasgs~Dg~V~vwd~~t~~~~~~------l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iW 704 (915)
.-...|..++|.-|+ ..|...+.|..+..+.+....+... .......|..++.. +..|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 345578888887665 3455554666777777665544433 33455667766654 3378888889999999
Q ss_pred ECCCCC---ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeEEEeec------------CceEEE
Q 002495 705 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKG------------GTAQMR 767 (915)
Q Consensus 705 dl~~~~---~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~D--g~I~iwdl~~~~~~~~~~~------------~~~~v~ 767 (915)
.++.+. ..+..+..+ ..+..+.-++...+++++|+.. ..+.|||++..+.+..-+. -...+.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 988432 223333333 5577788888888899999999 8999999998865544322 124567
Q ss_pred EecC--CCEEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec
Q 002495 768 FQPH--LGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 843 (915)
Q Consensus 768 ~sp~--~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~ 843 (915)
|.+. ...|++++.-+.|++||.+.+ +++..+.--+.+|+++...|++++|+++... .+..||++.+.... ..+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g--~~~k 287 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG--CGLK 287 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeec--cccC
Confidence 8777 678999999999999999976 6788888888999999999999999999888 99999999874322 2356
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCC
Q 002495 844 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 898 (915)
Q Consensus 844 ~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd 898 (915)
+..+.|.++..||..++++++|-|+.|+|+|+.+.+++.-......+++|.+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 6678899999999999999999999999999999777644444555666666443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-12 Score=150.83 Aligned_cols=231 Identities=17% Similarity=0.244 Sum_probs=165.9
Q ss_pred CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeC---CCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCC
Q 002495 657 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 733 (915)
Q Consensus 657 g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 733 (915)
..|.+||.+. .....+..|...|.+.+|+|||+.|+..+. +..|++||+.+ +. ...+..+.+.+.+.+|+|+|+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~-~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQ-RELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-Cc-EEEeecCCCcccCcEECCCCC
Confidence 4788888754 445667778889999999999999988764 46899999986 33 344555667788899999999
Q ss_pred eEEEEEeCCCc--EEEEEcCCCeeEEEeec--CceEEEEecCCCEEEEEEc-C--CeEEEEECCCceEEEEecCCCCCeE
Q 002495 734 DLICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPID 806 (915)
Q Consensus 734 ~ll~s~s~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~ 806 (915)
.++++.+.++. |++||++++........ ......|+|++..++.++. + ..|++||+.+++... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88878777665 77889988776554332 2456889999998887764 3 368889987765443 333445567
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 002495 807 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY------QSLELWNMS 876 (915)
Q Consensus 807 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~d------g~I~iwd~~ 876 (915)
...|+|+|++|+....+ .|.+||+..+. ...+.. ...+....|+|||+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 78999999988876543 58888875442 122222 2346678999999998877653 258888988
Q ss_pred CCcEEEEcccCCCeEEEEEeC
Q 002495 877 ENKTMTLTAHEGLIAALAVST 897 (915)
Q Consensus 877 ~~~~~~~~~h~~~V~~l~~sp 897 (915)
.+....+. ..+.+...+|+|
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSP 432 (435)
T ss_pred CCceEEcc-CCCCccCcccCC
Confidence 77665444 355567777776
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-13 Score=138.32 Aligned_cols=271 Identities=18% Similarity=0.202 Sum_probs=190.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEE-eCCCeEEEEECCCCCceEEEecc
Q 002495 640 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMG 718 (915)
Q Consensus 640 ~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~iWdl~~~~~~~~~~~~ 718 (915)
-++|||+|+++|+++.- .+.|-|.++.+....+.. -+.|.-|.|..|..+++++ ..|+.|.+|++..+ +-...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEecc
Confidence 46799999999999855 788888888765554433 4567888999988877666 45889999999874 34455566
Q ss_pred CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--eecCceEEEEecCCCEEEEEEc-C--------------
Q 002495 719 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA-E-------------- 781 (915)
Q Consensus 719 h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~ll~~~~-d-------------- 781 (915)
....+.+++|+|+|++++.+...|-.|.+|.+.+.++... -+.....++|++++.+.+.++. |
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 6788999999999999999999999999999998775443 2344555666666655444332 1
Q ss_pred ---------------------CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC------
Q 002495 782 ---------------------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG------ 833 (915)
Q Consensus 782 ---------------------g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~------ 833 (915)
+.+.+||.--.-.+..+. -.-.+..++|+|.+.+|++|+.| .+||.+--+-
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 123333322111111111 12457889999999999999999 7776431110
Q ss_pred -----------------------------------------CC----------cceEEEec------cCCCceEEEEEeC
Q 002495 834 -----------------------------------------SE----------GECVHELS------CNGNKFHSCVFHP 856 (915)
Q Consensus 834 -----------------------------------------~~----------~~~i~~~~------~~~~~i~~i~~sp 856 (915)
.. ...+..++ ...-.+..++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 00 00011111 1122356789999
Q ss_pred CCCEEEEEEcC--CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 857 TYPSLLVIGCY--QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 857 dg~~l~s~s~d--g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
|..++++-... +.+.+||+...++..+.....+|+...|+|....|+.+.....+++|
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 99888776554 58999999999988777788899999999999988888777778888
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-12 Score=129.13 Aligned_cols=231 Identities=16% Similarity=0.228 Sum_probs=162.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEE-EeCC------CeEEEEECCCC
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFD------KTVRVWDADNP 709 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~D------g~I~iWdl~~~ 709 (915)
....++|+-|...+++|.++ -.+||+++..+.......+.+.+.-+...--.++|+. |+.+ ..|.|||=. .
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~-k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL-K 84 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc-c
Confidence 45559999999999988755 5899999875543333333332222222223345543 3332 469999944 3
Q ss_pred CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeEEEeec---CceEEEEecCCC-EEEEE--EcCC
Q 002495 710 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKG---GTAQMRFQPHLG-RYLAA--AAEN 782 (915)
Q Consensus 710 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~-~~~~~~~~~~---~~~~v~~sp~~~-~ll~~--~~dg 782 (915)
..++.++. ...+|.+|.+.++ +++ +. .++.|++|... +-+.++.+.. +..-++..|..+ .+++. -.-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riV-vv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIV-VV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEE-EE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 56666665 6788999999865 343 33 37899999988 4555665543 222344444433 33332 2258
Q ss_pred eEEEEECCCceE--EEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEecc--CCCceEEEEEeC
Q 002495 783 VVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC--NGNKFHSCVFHP 856 (915)
Q Consensus 783 ~I~i~D~~t~~~--~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~--~~~~i~~i~~sp 856 (915)
.|.|.|+...+. ...+.+|...|.|++.+-+|.+||+++.. -|||||..++ ..+.+++. ....|.+++|+|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence 999999987665 47788999999999999999999999988 7999999988 44444443 245699999999
Q ss_pred CCCEEEEEEcCCeEEEEECCC
Q 002495 857 TYPSLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 857 dg~~l~s~s~dg~I~iwd~~~ 877 (915)
+..+|++++..|+|+||.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999998865
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-13 Score=143.34 Aligned_cols=237 Identities=15% Similarity=0.176 Sum_probs=158.7
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~i 703 (915)
.|.....+++|.+.|+.++|++|+.++++++.|..+++||+..+..+..+..|...|..++|.|-+.++++-+.|...++
T Consensus 112 ~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 112 KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccce
Confidence 57788889999999999999999999999999999999999999999999999999999999999999999999997777
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEc---
Q 002495 704 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA--- 780 (915)
Q Consensus 704 Wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~--- 780 (915)
+++.... .+.... + ..+...++.+.. ....++|--++.+ .-...++|+|++..+++.+.
T Consensus 192 ~~~~~~~-~~~~~~-~-~~m~~~~~~~~e---------~~s~rLfhDeTlk------sFFrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 192 FSAKLKQ-VIKRHG-L-DIMPAKAFNERE---------GKSTRLFHDETLK------SFFRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred eeeeeee-eeeeee-e-eEeeecccCCCC---------cceeeeeecCchh------hhhhhcccCCCCcEEEcccceee
Confidence 7775421 111110 0 001111111110 1112222211111 11123456666665555332
Q ss_pred -C-----CeEEEEECCCc-eEEEEecCCCCCeEEEEEcC------------------CCCEEEEEeCCeEEEEECCCCCC
Q 002495 781 -E-----NVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP------------------SGELLASVSEDSVRVWTVGSGSE 835 (915)
Q Consensus 781 -d-----g~I~i~D~~t~-~~~~~l~~h~~~V~si~~sp------------------dg~~Las~s~d~I~iwdl~s~~~ 835 (915)
+ +..++|+-... +++..+.+...++..+.|+| .+..++.++.+.|+|||..+...
T Consensus 254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P 333 (434)
T KOG1009|consen 254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEP 333 (434)
T ss_pred eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccc
Confidence 1 23344544322 34444444444444444443 34467888888999999987654
Q ss_pred cceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 002495 836 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT 880 (915)
Q Consensus 836 ~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~ 880 (915)
..++.. .|-..|+.++|+++|.++++.+.||...+..++..++
T Consensus 334 ~~~v~n--ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 334 LAVVDN--IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eEEEee--eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 444443 4678899999999999999999999777666655543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-14 Score=152.41 Aligned_cols=205 Identities=16% Similarity=0.207 Sum_probs=163.6
Q ss_pred CEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEE
Q 002495 648 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 727 (915)
Q Consensus 648 ~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~ 727 (915)
..|+.++.||.+.|.+ +.++..+.+..|.+.|.|-+|++||.-|+++++||.|++|.-. +....++.-....|+|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhhcCceeEEEE
Confidence 4678888899999887 4677888899999999999999999999999999999999875 444445556778999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe---ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC
Q 002495 728 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP 804 (915)
Q Consensus 728 fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~---~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~ 804 (915)
|.|+.+.++++.+ +.+.|=-+.....+-.. .+-+.++.|++..+.+++++.|-..+|||.- |..++.-..|+.+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999988886654 45555444443333333 3446788999999999999999999999975 4556666779999
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002495 805 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 873 (915)
Q Consensus 805 V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iw 873 (915)
|++++|.|+ +.++.++..++|+=..+ .+.|..++|++||..+++|+..|.|.+-
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~p~--------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSSPR--------------VGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecCCC--------------ccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999 77788888777633332 4678899999999999999999866553
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-14 Score=150.57 Aligned_cols=194 Identities=22% Similarity=0.262 Sum_probs=141.0
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee
Q 002495 681 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 760 (915)
Q Consensus 681 ~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~ 760 (915)
.+++|+.+|..|++++.||++|||++.+ ...+.....|...|.+|+|+||+.. |++.+.| ..+||+++++.++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~~~~eV~DL~FS~dgk~-lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIAHHAEVKDLDFSPDGKF-LASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHhhcCccccceeCCCCcE-EEEecCC-ceEEEEeccCchhhhcC
Confidence 7899999999999999999999999876 4556667789999999999999875 5577778 99999999985554332
Q ss_pred cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC---C-EEEEEe-CC-eEEEEECCCCC
Q 002495 761 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG---E-LLASVS-ED-SVRVWTVGSGS 834 (915)
Q Consensus 761 ~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg---~-~Las~s-~d-~I~iwdl~s~~ 834 (915)
.. ..+..+..+.|+.|+ . +|++.- .. .|+.||+....
T Consensus 225 ~~-------------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 225 PF-------------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred Cc-------------------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 10 011223334444443 1 222221 11 45555554322
Q ss_pred Cc--ceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCEEEEEecCCc
Q 002495 835 EG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKF 910 (915)
Q Consensus 835 ~~--~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~Lasgs~Dg~ 910 (915)
.. -...........|++++++++|++++.|+.||.|-|++..+.+++ .-..|...|+.+.|+||.+++++.+.|..
T Consensus 268 ~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 268 GSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred cccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 11 111222223457999999999999999999999999999999888 44579999999999999999999888887
Q ss_pred EEEc
Q 002495 911 VKLW 914 (915)
Q Consensus 911 I~IW 914 (915)
+.|.
T Consensus 348 ~~v~ 351 (398)
T KOG0771|consen 348 AAVT 351 (398)
T ss_pred eeEE
Confidence 7664
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-12 Score=151.15 Aligned_cols=232 Identities=17% Similarity=0.151 Sum_probs=165.6
Q ss_pred CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCC---CeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCC
Q 002495 657 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 733 (915)
Q Consensus 657 g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 733 (915)
..|.+||.+. ...+.+..+...+.+.+|+||++.|+.++.+ ..|++||+.+ +.. ..+..+.+...+++|+|+++
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEeccCCCCccCceECCCCC
Confidence 4688999864 4455566777889999999999999988753 4699999986 332 33334445566789999999
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeEEEeec--CceEEEEecCCCEEEEEEc-CC--eEEEEECCCceEEEEecCCCCCeE
Q 002495 734 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPID 806 (915)
Q Consensus 734 ~ll~s~s~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~ 806 (915)
.++++.+.+| .|++||+.+++....... ......|+|++..+++++. ++ .|+++|+.+++.... ..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCcc
Confidence 8887777666 599999998876543332 2356889999998888765 34 477788877654332 22334455
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCc
Q 002495 807 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENK 879 (915)
Q Consensus 807 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~d---g~I~iwd~~~~~ 879 (915)
.++|+|||++|+..+.+ .|.+||+.++.. ..+.. ........|+|||++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----RTLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe----EECCC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 78999999988876533 599999976632 12222 2234567899999998887764 378889997766
Q ss_pred EEEEcccCCCeEEEEEeC
Q 002495 880 TMTLTAHEGLIAALAVST 897 (915)
Q Consensus 880 ~~~~~~h~~~V~~l~~sp 897 (915)
...+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666777788888876
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-12 Score=141.44 Aligned_cols=268 Identities=17% Similarity=0.278 Sum_probs=186.9
Q ss_pred CeEEEEEcCCCCEEEEEE-----CC-----CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 002495 637 KVICCHFSSDGKLLATGG-----HD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs-----~D-----g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl 706 (915)
.++++.|+|.|.+|.|-- .+ -.+.+|+++++..+..+......-+++.|+.|..+.+ =-..+.|.+|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEec
Confidence 799999999999988631 22 3577999998666665554333336889998875432 223567999999
Q ss_pred CCCCceEEEeccCCCCeEEEEEcCCCC-eEEEE-----EeCCCcEEEEEcCCCe------eEEEeecCceEEEEecCCCE
Q 002495 707 DNPGYSLRTFMGHSASVMSLDFHPNKD-DLICS-----CDGDGEIRYWSINNGS------CTRVFKGGTAQMRFQPHLGR 774 (915)
Q Consensus 707 ~~~~~~~~~~~~h~~~V~sl~fsp~~~-~ll~s-----~s~Dg~I~iwdl~~~~------~~~~~~~~~~~v~~sp~~~~ 774 (915)
.+....... -|...|..+.++|... ..+|+ .+.-+.|+||.+.... +...|+.....+.|...+.-
T Consensus 154 ~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 154 GSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred CCccceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence 873333333 3577899999998733 33432 3455779999887332 22234556667888888765
Q ss_pred EEEE-Ec-----------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEE-eCC--eEEEEECCCCCCcceE
Q 002495 775 YLAA-AA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SED--SVRVWTVGSGSEGECV 839 (915)
Q Consensus 775 ll~~-~~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~-s~d--~I~iwdl~s~~~~~~i 839 (915)
|++. .. +.+++++++....++..+. ..++|++++|+++++-++++ +.- .+.|||++. ..+
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~v 306 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KPV 306 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----CEe
Confidence 4443 22 2478888888556665554 57899999999999844443 333 899999953 233
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEec------CCc
Q 002495 840 HELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKF 910 (915)
Q Consensus 840 ~~~~~~~~~i~~i~~spdg~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~------Dg~ 910 (915)
. ....++-.++-|+|.|++|+.+|.+ |.|.|||+.+.+++....-. .-+-+.|+|||.+|+|+.. |+.
T Consensus 307 ~--df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 307 F--DFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNG 383 (566)
T ss_pred E--eCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCC
Confidence 3 3346778889999999999999987 59999999997777332222 2345689999999999874 677
Q ss_pred EEEcC
Q 002495 911 VKLWK 915 (915)
Q Consensus 911 I~IWd 915 (915)
++||+
T Consensus 384 ~Kiwh 388 (566)
T KOG2315|consen 384 IKIWH 388 (566)
T ss_pred eEEEE
Confidence 88885
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.54 E-value=5e-11 Score=133.70 Aligned_cols=271 Identities=14% Similarity=0.179 Sum_probs=187.6
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCC--c--eeeEeccCCCcEEEEEECCCCCEEEEE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----DKKAVLWHTDTL--K--SKTNLEEHSSLITDVRFSPSMPRLATS 695 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~----Dg~V~vwd~~t~--~--~~~~l~~h~~~V~~l~fspdg~~Lasg 695 (915)
.+..+..+. -......+++++++++|+++.. ++.|..|++... . .+..........+.|++++++++|+++
T Consensus 26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 445555433 3445678999999999999987 468999988753 2 333344345567789999999999999
Q ss_pred eC-CCeEEEEECCCCCceEEE--ec-----------cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe--eEE--
Q 002495 696 SF-DKTVRVWDADNPGYSLRT--FM-----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTR-- 757 (915)
Q Consensus 696 s~-Dg~I~iWdl~~~~~~~~~--~~-----------~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~--~~~-- 757 (915)
.+ +|.|.++++...+..... .. .......++.|+|++++++++.-....|++|++.... ...
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 86 899999999875543332 11 1234578899999999888777667889999998765 322
Q ss_pred Eee----cCceEEEEecCCCEEEEEEc-CCeEEEEECC--Cce--EEEEecCC------CCCeEEEEEcCCCCEEEEEeC
Q 002495 758 VFK----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAE--TQA--CRLSLQGH------TKPIDSVCWDPSGELLASVSE 822 (915)
Q Consensus 758 ~~~----~~~~~v~~sp~~~~ll~~~~-dg~I~i~D~~--t~~--~~~~l~~h------~~~V~si~~spdg~~Las~s~ 822 (915)
.+. .+...+.|+|+++++++... ++.|.+|++. ++. .+..+... ......|+++|||++|+++..
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 222 24567999999998888776 7889999887 442 22222211 125778999999999888876
Q ss_pred C--eEEEEECC-CCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC--CCCcEEEEc--ccCCCeEEEE
Q 002495 823 D--SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNM--SENKTMTLT--AHEGLIAALA 894 (915)
Q Consensus 823 d--~I~iwdl~-s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~d-g~I~iwd~--~~~~~~~~~--~h~~~V~~l~ 894 (915)
+ .|.+|++. .......+..+...+.....+.++|++++|+++..+ +.|.+|++ .++.+.... ..-....||.
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 6 89999994 334556666777667778999999999999998855 68998866 566655322 2344556665
Q ss_pred E
Q 002495 895 V 895 (915)
Q Consensus 895 ~ 895 (915)
|
T Consensus 345 f 345 (345)
T PF10282_consen 345 F 345 (345)
T ss_dssp E
T ss_pred C
Confidence 5
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-12 Score=141.67 Aligned_cols=251 Identities=14% Similarity=0.155 Sum_probs=163.6
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeeEeccC-------CCcEEEEEECCCCCEEEEEeC-
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEH-------SSLITDVRFSPSMPRLATSSF- 697 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspdg~~Lasgs-~Dg~V~vwd~~t~~~~~~l~~h-------~~~V~~l~fspdg~~Lasgs~- 697 (915)
.+.+++... ...++++|+||+++++++ .++.|.|+|.++.+.++.+... ...+..|..++....+++.-.
T Consensus 70 ~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 70 VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred EEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence 444454433 468899999999999886 5899999999999999887643 346888988998886665554
Q ss_pred CCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCce------EEEEecC
Q 002495 698 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA------QMRFQPH 771 (915)
Q Consensus 698 Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~------~v~~sp~ 771 (915)
.+.|.+.|......................|.|++++++++...+..|-++|.++++.+..+..+.. .--.+|.
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~ 228 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG 228 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC
Confidence 5888888887654444444445567788999999998888777888999999999988776543211 1112333
Q ss_pred CCEE----------EEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEE---eCC--eEEEEECCCCCCc
Q 002495 772 LGRY----------LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV---SED--SVRVWTVGSGSEG 836 (915)
Q Consensus 772 ~~~l----------l~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~---s~d--~I~iwdl~s~~~~ 836 (915)
.+.+ +.....+.+.+||..+.+.+.++...... ..+..+|+++++.+. +.+ .|.|+|.++.
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--- 304 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--- 304 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT---
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc---
Confidence 3222 23333445667888899999999877666 778889999999988 444 8999999876
Q ss_pred ceEEEecc-CCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEE
Q 002495 837 ECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMT 882 (915)
Q Consensus 837 ~~i~~~~~-~~~~i~~i~~spdg~~l~s~s~dg--~I~iwd~~~~~~~~ 882 (915)
+.+..+.. ....+..+.|+++|++++++..++ .|.|||..+.+++.
T Consensus 305 ~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 305 KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 44455432 233588999999999888877654 69999999999883
|
... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.9e-12 Score=144.18 Aligned_cols=203 Identities=15% Similarity=0.202 Sum_probs=146.0
Q ss_pred eEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEe--CCCcEEEEEcCCCeeE--EEeecCceEEEEecCCCEE
Q 002495 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCT--RVFKGGTAQMRFQPHLGRY 775 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s--~Dg~I~iwdl~~~~~~--~~~~~~~~~v~~sp~~~~l 775 (915)
.|.+||.+. ...+.+..+...+.+.+|+|||+.++++.. .+..|++||+.+++.. ..+.+....+.|+|++..+
T Consensus 180 ~l~~~d~dg--~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDG--YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCC--CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 688888874 233445556778999999999988776543 2457999999988543 3455666778999999988
Q ss_pred EEEEc-CC--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCc
Q 002495 776 LAAAA-EN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 848 (915)
Q Consensus 776 l~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~ 848 (915)
+.... ++ .|++||+++++.... ..+...+...+|+|||+.|+..+.+ .|+++|+.++. ...+......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~~~~~ 332 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITWEGSQ 332 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeecCCCC
Confidence 87643 44 699999998876543 3344567889999999988777653 45555665542 2222333444
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCc
Q 002495 849 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 910 (915)
Q Consensus 849 i~~i~~spdg~~l~s~s~dg---~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~ 910 (915)
.....|+|||++|+..+.++ .|++||+.+++...+... .......|+|||++|+.++.|+.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 56788999999998876543 689999998876655432 23457889999999999988765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=135.87 Aligned_cols=241 Identities=18% Similarity=0.338 Sum_probs=168.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-----eeeEeccC------------CCcEEEEEECCCCC--EEEE
Q 002495 634 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEH------------SSLITDVRFSPSMP--RLAT 694 (915)
Q Consensus 634 H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~-----~~~~l~~h------------~~~V~~l~fspdg~--~Las 694 (915)
..+-|.+|.|..+|.+||||..+|.|.+|.-+... ....+..| ...|..|+|.+++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35679999999999999999999999999754222 22333333 34588999998654 5777
Q ss_pred EeCCCeEEEEECCCCCce----------------------------------EEEe-ccCCCCeEEEEEcCCCCeEEEEE
Q 002495 695 SSFDKTVRVWDADNPGYS----------------------------------LRTF-MGHSASVMSLDFHPNKDDLICSC 739 (915)
Q Consensus 695 gs~Dg~I~iWdl~~~~~~----------------------------------~~~~-~~h~~~V~sl~fsp~~~~ll~s~ 739 (915)
...|++|++|.+...+.. .+.+ ..|+.-|.+|.++.|...++ ++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence 788999999988643211 1111 25788899999999987766 54
Q ss_pred eCCCcEEEEEcCCCe-eEEE--ee--------cCceEEEEecCC-CEEEEEEcCCeEEEEECCCceEEE----Ee-----
Q 002495 740 DGDGEIRYWSINNGS-CTRV--FK--------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRL----SL----- 798 (915)
Q Consensus 740 s~Dg~I~iwdl~~~~-~~~~--~~--------~~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~~----~l----- 798 (915)
+|-.|.+|+++-.. +... ++ .-+++..|+|.. +.++..++.|+|++.|++.....- .+
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 58899999987432 1111 11 123556788875 566677789999999998432111 11
Q ss_pred -------cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCC---------------ceEEEEEeC
Q 002495 799 -------QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN---------------KFHSCVFHP 856 (915)
Q Consensus 799 -------~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~---------------~i~~i~~sp 856 (915)
.+--..|..+.|+++|+|+++-+.-+|+|||+.... +.+..+..|.. .-..|+|+.
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 112245788999999999998887799999996543 23333322211 124578999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC
Q 002495 857 TYPSLLVIGCYQSLELWNMSEN 878 (915)
Q Consensus 857 dg~~l~s~s~dg~I~iwd~~~~ 878 (915)
++.++++|+..+.+++|++..+
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CcceEecccccceEEEecCCCC
Confidence 9999999999999999996544
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.5e-11 Score=131.42 Aligned_cols=266 Identities=16% Similarity=0.167 Sum_probs=180.0
Q ss_pred EEEEECC----CcEEEEEC--CCCceeeEe-ccCCCcEEEEEECCCCCEEEEEeC----CCeEEEEECCCC-Cc--eEEE
Q 002495 650 LATGGHD----KKAVLWHT--DTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSF----DKTVRVWDADNP-GY--SLRT 715 (915)
Q Consensus 650 Lasgs~D----g~V~vwd~--~t~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~----Dg~I~iWdl~~~-~~--~~~~ 715 (915)
+++|+++ +.|++|++ ++++....- .........|++++++++|+++.. ++.|..|++... +. .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5666666 68999888 344432211 123455678899999999999977 579999999874 22 2223
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEE---e-------------ecCceEEEEecCCCEEEEE
Q 002495 716 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F-------------KGGTAQMRFQPHLGRYLAA 778 (915)
Q Consensus 716 ~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~-~~~~~~---~-------------~~~~~~v~~sp~~~~ll~~ 778 (915)
..........|+++|+++.++++...+|.|.+|++.. +..... + ..+..++.++|++++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3323445567999999998888877899999999987 443322 2 1234678999999998887
Q ss_pred Ec-CCeEEEEECCCce--E--EEEec-CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCcceEEEeccC----
Q 002495 779 AA-ENVVSILDAETQA--C--RLSLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSCN---- 845 (915)
Q Consensus 779 ~~-dg~I~i~D~~t~~--~--~~~l~-~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~-~~~~~i~~~~~~---- 845 (915)
.. ...|++|++.... . ...+. .....-+.++|+|+++++++..+. .|.+|++... .....+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 66 5689999987654 2 22222 234567889999999988888766 8999998722 222333333221
Q ss_pred --CCceEEEEEeCCCCEEEEEEcC-CeEEEEECC--CCcEE---EEcccCCCeEEEEEeCCCCEEEEEe-cCCcEEEcC
Q 002495 846 --GNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK 915 (915)
Q Consensus 846 --~~~i~~i~~spdg~~l~s~s~d-g~I~iwd~~--~~~~~---~~~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~IWd 915 (915)
......++++||+++|+++... +.|.+|++. ++++. .+.......+.++++|+|++|++++ .++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999888754 689999994 34443 3333445689999999999998887 567888874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-12 Score=140.52 Aligned_cols=167 Identities=15% Similarity=0.244 Sum_probs=129.6
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeeEec----cCCCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCC---------
Q 002495 645 SDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPG--------- 710 (915)
Q Consensus 645 pdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~----~h~~~V~~l~fspdg~-~Lasgs~Dg~I~iWdl~~~~--------- 710 (915)
+++--|+.|-..|.|.+.|....+..+.+. .....|+||.|-|.++ .++++-.+|.+++||.+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 456677788888999998865432222121 2347899999999544 56666679999999764210
Q ss_pred ------------------ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE---EeecCceEEEEe
Q 002495 711 ------------------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGGTAQMRFQ 769 (915)
Q Consensus 711 ------------------~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~---~~~~~~~~v~~s 769 (915)
.++..+.--.+.|..++|+|||. +||+.+.||.+||||..+.+++. .+-++..|++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 11112222345788999999876 55689999999999999887664 455789999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcC
Q 002495 770 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 812 (915)
Q Consensus 770 p~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~sp 812 (915)
||+++|++|+.|..|.||.+..++.+..-.+|+.+|..|+|+|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999998
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-14 Score=161.18 Aligned_cols=244 Identities=20% Similarity=0.231 Sum_probs=184.3
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~i 703 (915)
+-.+....+||.+.|+.++.+....++|+++.|..|+||.+..+.++..+.+|++.|++|+|+|-. +.+.||++++
T Consensus 221 t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~ 296 (1113)
T KOG0644|consen 221 TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRI 296 (1113)
T ss_pred chhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEe
Confidence 445678899999999999999999999999999999999999999999999999999999999964 7788999999
Q ss_pred EECCCCCceEEE----ec-cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCC-CEEEE
Q 002495 704 WDADNPGYSLRT----FM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL-GRYLA 777 (915)
Q Consensus 704 Wdl~~~~~~~~~----~~-~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~-~~ll~ 777 (915)
||.+- ..+.. +. ....-+.++-|...+..++ +++.|+.-..|.+....+....- .-+..+.+. ...++
T Consensus 297 wd~r~--~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tgs~d~ea~n~e~~~l~~~~~~l---if~t~ssd~~~~~~~ 370 (1113)
T KOG0644|consen 297 WDARL--EPRIYVPRPLKFTEKDLVDSILFENNGDRFL-TGSRDGEARNHEFEQLAWRSNLL---IFVTRSSDLSSIVVT 370 (1113)
T ss_pred ccccc--cccccCCCCCCcccccceeeeeccccccccc-cccCCcccccchhhHhhhhccce---EEEecccccccccee
Confidence 99982 11111 11 1224566677766665544 99999999998776433221100 001111121 34555
Q ss_pred EEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEe
Q 002495 778 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 855 (915)
Q Consensus 778 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s 855 (915)
+-.+-.+++|++.++...+.+.+|...+..+.++|-.. +..+++.| .+.|||+-.+...+. +......+....|+
T Consensus 371 ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~---y~~gh~kl~d~kFS 447 (1113)
T KOG0644|consen 371 ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH---YFIGHGKLVDGKFS 447 (1113)
T ss_pred eeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCccee---eecccceeeccccC
Confidence 56678899999999999999999999999999999665 44566777 999999987743332 22336678888999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcE
Q 002495 856 PTYPSLLVIGCYQSLELWNMSENKT 880 (915)
Q Consensus 856 pdg~~l~s~s~dg~I~iwd~~~~~~ 880 (915)
++|..++....-|.++|+....++.
T Consensus 448 qdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 448 QDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred CCCceEecCCCCCceEEeccCCCcc
Confidence 9999999888889999998766543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-12 Score=144.87 Aligned_cols=233 Identities=17% Similarity=0.148 Sum_probs=157.2
Q ss_pred CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCC---CeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCC
Q 002495 657 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 733 (915)
Q Consensus 657 g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 733 (915)
..|.+||.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+ +... .+....+.+.+.+|+||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~-~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRR-VVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEE-EeecCCCCccceEECCCCC
Confidence 357777764 44455566778889999999999999887753 3599999987 4332 3333445667899999999
Q ss_pred eEEEEEeCCCcEEEEE--cCCCeeEEEee--cCceEEEEecCCCEEEEEEc-CCe--EEEEECCCceEEEEecCCCCCeE
Q 002495 734 DLICSCDGDGEIRYWS--INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENV--VSILDAETQACRLSLQGHTKPID 806 (915)
Q Consensus 734 ~ll~s~s~Dg~I~iwd--l~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~-dg~--I~i~D~~t~~~~~~l~~h~~~V~ 806 (915)
.++++.+.+|...||. +..+....... .......|+|++..++.++. ++. |+++|+.+++..... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 8887888888766665 44444332222 23456789999998887665 344 444455555433222 2223345
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 002495 807 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 879 (915)
Q Consensus 807 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg---~I~iwd~~~~~ 879 (915)
..+|+|||++|+..+.+ .|.+||+.++.. ..+.. ........|+|+++.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 67899999998876643 599999987632 12222 22345779999999999888665 57777775544
Q ss_pred EEEEcccCCCeEEEEEeCC
Q 002495 880 TMTLTAHEGLIAALAVSTE 898 (915)
Q Consensus 880 ~~~~~~h~~~V~~l~~spd 898 (915)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456667788888888873
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-12 Score=136.63 Aligned_cols=235 Identities=16% Similarity=0.176 Sum_probs=177.4
Q ss_pred CCCcEEEEEECCCCC--EEEEEeCCCeEEEEECCCCCce-----EEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEE
Q 002495 676 HSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 748 (915)
Q Consensus 676 h~~~V~~l~fspdg~--~Lasgs~Dg~I~iWdl~~~~~~-----~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iw 748 (915)
....|..++|.-++. .|+.++.|..+..+++...+.. +.........|..++... . .|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g-~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--G-TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--C-EEEEEecCCcEEEE
Confidence 445677788876554 3444446777777777653221 123445567777777652 3 45588999999999
Q ss_pred EcCCC-----eeEEEee-cCceEEEEecCCCEEEE-EEcC--CeEEEEECCCceEEEEecCC---------CCCeEEEEE
Q 002495 749 SINNG-----SCTRVFK-GGTAQMRFQPHLGRYLA-AAAE--NVVSILDAETQACRLSLQGH---------TKPIDSVCW 810 (915)
Q Consensus 749 dl~~~-----~~~~~~~-~~~~~v~~sp~~~~ll~-~~~d--g~I~i~D~~t~~~~~~l~~h---------~~~V~si~~ 810 (915)
..+.+ +.+..-. .+...+.-++....+++ |+.+ ..+.|||++..+.+..-+.- .-+++.+.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 99843 3332222 34455666666666666 6667 78999999988666654332 235778899
Q ss_pred cCC--CCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcc
Q 002495 811 DPS--GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTA 885 (915)
Q Consensus 811 spd--g~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~--~~~~ 885 (915)
.+. ...|++++.- .|++||.+.+. +++..+...++.++++...|+++.|+++...+.|..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 6788888877 99999998654 667777777999999999999999999999999999999999988 4789
Q ss_pred cCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 886 HEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 886 h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
..+.|++|..+|...+|++|+-|..|||+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 999999999999999999999999999997
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-12 Score=146.07 Aligned_cols=221 Identities=18% Similarity=0.236 Sum_probs=151.0
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEE-EeCCCeEEEE
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKTVRVW 704 (915)
Q Consensus 629 ~~l~~H~~~V~~lafspdg~~Lasgs~D---g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~I~iW 704 (915)
..+..+.+.|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+. .+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4455678889999999999999887753 359999999886543 3334456778999999998874 5678877777
Q ss_pred ECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEc--CCCeeEEEe-ec-CceEEEEecCCCEEEEEEc
Q 002495 705 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGSCTRVF-KG-GTAQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 705 dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl--~~~~~~~~~-~~-~~~~v~~sp~~~~ll~~~~ 780 (915)
.++..+...+.+..+...+....|+|||+.+++++..+|...||.+ .+++..+.. .+ ......|+|++..++.++.
T Consensus 268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 6543334456666666667788999999988877666676666655 444433322 22 2345789999999888776
Q ss_pred CC---eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002495 781 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853 (915)
Q Consensus 781 dg---~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 853 (915)
++ .|++||+.+++...... ........|+|||++|+..+.+ .+.+.++. + .....+..+.+.+...+
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~ 421 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPS 421 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCc
Confidence 54 69999998886543322 2334678999999988877654 35555552 2 22333333445566667
Q ss_pred EeC
Q 002495 854 FHP 856 (915)
Q Consensus 854 ~sp 856 (915)
|+|
T Consensus 422 wsp 424 (427)
T PRK02889 422 WGP 424 (427)
T ss_pred cCC
Confidence 765
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-12 Score=149.93 Aligned_cols=249 Identities=19% Similarity=0.270 Sum_probs=172.7
Q ss_pred EECCCCceeeEeccCCCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCC------ceEEEeccCCCCeEEEEEcCCCCe
Q 002495 662 WHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDD 734 (915)
Q Consensus 662 wd~~t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~iWdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ 734 (915)
|+. .|..+..+..|...|..++.+++. .+|++||.||+|+||++..-. ....++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 577888899999999999998755 899999999999999987421 122344445678999999988776
Q ss_pred EEEEEeCCCcEEEEEcCCCe-------eEEEee----cCceEE-EEecC-CC-EEEEEEcCCeEEEEECCCceEEEEecC
Q 002495 735 LICSCDGDGEIRYWSINNGS-------CTRVFK----GGTAQM-RFQPH-LG-RYLAAAAENVVSILDAETQACRLSLQG 800 (915)
Q Consensus 735 ll~s~s~Dg~I~iwdl~~~~-------~~~~~~----~~~~~v-~~sp~-~~-~ll~~~~dg~I~i~D~~t~~~~~~l~~ 800 (915)
+. .++.||.|++.+++... +.+..+ +.+..+ ++... .. .++++...+.|..||+++.....+++.
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 55 66999999999998621 112111 111111 12222 23 567777789999999998765555443
Q ss_pred --CCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEec-cCCCceEEEEEeCCCC---EEEEEEc--CCeEE
Q 002495 801 --HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYP---SLLVIGC--YQSLE 871 (915)
Q Consensus 801 --h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~-~~~~~i~~i~~spdg~---~l~s~s~--dg~I~ 871 (915)
..+.|++++.+|.+.++++|+.. .+.+||++-+ ..+..+. .+..++..+..+|-.. ..++++. .+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 34779999999999999999988 9999999865 3333322 2346677777766443 4454444 56999
Q ss_pred EEECCCCcEE-EEccc-------------------CCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 872 LWNMSENKTM-TLTAH-------------------EGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 872 iwd~~~~~~~-~~~~h-------------------~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+|++.++.+. .+... .-.....++..-+.++++|+.|..||.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999988544 22111 11223344555567899999999999998
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-11 Score=127.27 Aligned_cols=229 Identities=13% Similarity=0.204 Sum_probs=164.4
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceE-EEeccCCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcC
Q 002495 679 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSIN 751 (915)
Q Consensus 679 ~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~-~~~~~h~~~V~sl~fsp~~~~ll~s~s~D------g~I~iwdl~ 751 (915)
....++|+-|...+++|.++| .+||+++--++.. +.+....-.+..+-|- .+.+.++|+.+ +.|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999998877 8999987522211 1111111233333343 24455566544 579999977
Q ss_pred CCeeEEEe--ecCceEEEEecCCCEEEEEEcCCeEEEEECC-CceEEEEecC--CCCCeEEEEEcCCCCEEEEEeCC--e
Q 002495 752 NGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQG--HTKPIDSVCWDPSGELLASVSED--S 824 (915)
Q Consensus 752 ~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~-t~~~~~~l~~--h~~~V~si~~spdg~~Las~s~d--~ 824 (915)
..+++.++ ...+..+++.++ .++...++.|+||... +.+.++.+.. ....+.+++-..+..+||.-+.. .
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 77777665 456777777765 4556678899999887 4455555543 23445555544445577766655 8
Q ss_pred EEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEc--ccCCCeEEEEEeCCCC
Q 002495 825 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLT--AHEGLIAALAVSTETG 900 (915)
Q Consensus 825 I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg-~I~iwd~~~~~~~-~~~--~h~~~V~~l~~spdg~ 900 (915)
|.|-|+...... .-..+..|...|.+++..-+|..+++++..| -|||||..+++.+ ++. .....|.+|+|+|+..
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999765332 3466788999999999999999999999999 5899999999988 443 3456899999999999
Q ss_pred EEEEEecCCcEEEc
Q 002495 901 YVASASHDKFVKLW 914 (915)
Q Consensus 901 ~Lasgs~Dg~I~IW 914 (915)
+||++|+.|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999997
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.4e-13 Score=143.81 Aligned_cols=249 Identities=20% Similarity=0.278 Sum_probs=189.2
Q ss_pred CceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCC-CCeEEEEEeCCCcE
Q 002495 667 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEI 745 (915)
Q Consensus 667 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~s~s~Dg~I 745 (915)
......|..|.+.|..|.|+..|..|++|+.|..|.+||+......+....+|...|.-..|.|. +..-|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 34556788999999999999999999999999999999999866667777899999988888885 34457799999999
Q ss_pred EEEEcCCCe------eEEEeecCceEEEEecCCC-EEEEEEcCCeEEEEECCCceEEEEe---cCCCC---CeEEEEEcC
Q 002495 746 RYWSINNGS------CTRVFKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSL---QGHTK---PIDSVCWDP 812 (915)
Q Consensus 746 ~iwdl~~~~------~~~~~~~~~~~v~~sp~~~-~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~---~V~si~~sp 812 (915)
++=.+.... .+....+++..++..|+.. .|++++.|+.|.-+|++.......+ ..+.. ....|+.+|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 998765432 3334567788888888774 5778888999999999987443322 22333 467889999
Q ss_pred CCC-EEEEEeCC-eEEEEECCCCCCc---ceEEEe------ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--
Q 002495 813 SGE-LLASVSED-SVRVWTVGSGSEG---ECVHEL------SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-- 879 (915)
Q Consensus 813 dg~-~Las~s~d-~I~iwdl~s~~~~---~~i~~~------~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~-- 879 (915)
... .+++++.| .++|||.+.-... ..+..+ ......|++++|+.++.-|++...|..|++|.-.-+.
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 665 78888888 9999998764321 111111 1234569999999999999999999999999543221
Q ss_pred ----------EE--EEcccCC--CeEEEEE-eCCCCEEEEEecCCcEEEcC
Q 002495 880 ----------TM--TLTAHEG--LIAALAV-STETGYVASASHDKFVKLWK 915 (915)
Q Consensus 880 ----------~~--~~~~h~~--~V~~l~~-spdg~~Lasgs~Dg~I~IWd 915 (915)
.+ .+++|.. .|.++-| -|...|+++|++-|.|.|||
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 11 3667764 5777765 68889999999999999997
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-12 Score=138.29 Aligned_cols=238 Identities=17% Similarity=0.212 Sum_probs=171.2
Q ss_pred cCCCcEEEEEECCCCCEE-EEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002495 675 EHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 753 (915)
Q Consensus 675 ~h~~~V~~l~fspdg~~L-asgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~ 753 (915)
.|....+.|..+|||.|| ++|.+--.|+|||+.+ ..++.-......|..+....+.-.-+|.-..|.+|-+..--..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan--LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN--LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccc--ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 477888999999999985 6667788999999986 2233223233444444333322222223344777766543222
Q ss_pred eeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC
Q 002495 754 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 832 (915)
Q Consensus 754 ~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s 832 (915)
.....+......++++.....+++++....|+-++++.|..+..+......+++|..++...+|++|+.+ .|.+||.++
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 2222233334556777666778888999999999999999999888888999999999999999999978 999999988
Q ss_pred CCCcceEEE---eccCCC-----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC--CeEEEEEeCC--CC
Q 002495 833 GSEGECVHE---LSCNGN-----KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG--LIAALAVSTE--TG 900 (915)
Q Consensus 833 ~~~~~~i~~---~~~~~~-----~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~--~V~~l~~spd--g~ 900 (915)
......+.. +..+.+ .|+++.|..+|-.+++|+.+|.|.|||++..+.+....|.. +|..+.|.+. ..
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 644333322 122222 38999999999999999999999999999999998877765 7888888665 44
Q ss_pred EEEEEecCCcEEEcC
Q 002495 901 YVASASHDKFVKLWK 915 (915)
Q Consensus 901 ~Lasgs~Dg~I~IWd 915 (915)
.|+|+ +...++|||
T Consensus 287 ~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWD 300 (703)
T ss_pred eEEec-chHHhhhcc
Confidence 56655 456789996
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=142.61 Aligned_cols=220 Identities=18% Similarity=0.244 Sum_probs=152.4
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEE-EeCCC--eE
Q 002495 628 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDK--TV 701 (915)
Q Consensus 628 ~~~l~~H~~~V~~lafspdg~~Lasgs~D---g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg--~I 701 (915)
...+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+.|+. .+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 44566778889999999999999988744 369999998776533 3344455668899999998764 45555 59
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeEEEe-ec-CceEEEEecCCCEEEE
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF-KG-GTAQMRFQPHLGRYLA 777 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~--I~iwdl~~~~~~~~~-~~-~~~~v~~sp~~~~ll~ 777 (915)
++||+.+ +. +..+..+......++|+|++..++++...+|. |+++|+.+++..+.. .+ ......|+|++..++.
T Consensus 275 y~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~ 352 (433)
T PRK04922 275 YVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAM 352 (433)
T ss_pred EEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEE
Confidence 9999986 33 44555666666789999999888877666665 677777776654432 22 2346899999999888
Q ss_pred EEcCC---eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceE
Q 002495 778 AAAEN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFH 850 (915)
Q Consensus 778 ~~~dg---~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~ 850 (915)
...++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ .|.++++... ....+..+...+.
T Consensus 353 ~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~ 426 (433)
T PRK04922 353 VHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVR 426 (433)
T ss_pred EECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCC
Confidence 76543 6999999888655 333 22345567999999987766653 5777777432 2333333345555
Q ss_pred EEEEeC
Q 002495 851 SCVFHP 856 (915)
Q Consensus 851 ~i~~sp 856 (915)
..+|+|
T Consensus 427 ~p~wsp 432 (433)
T PRK04922 427 EPAWSP 432 (433)
T ss_pred CCccCC
Confidence 666665
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-12 Score=131.62 Aligned_cols=250 Identities=17% Similarity=0.270 Sum_probs=189.1
Q ss_pred ccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC-CCCceeeEec-cCCCcEEEEEECCCCCEEEEEeCCCe
Q 002495 623 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKT 700 (915)
Q Consensus 623 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~-~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~ 700 (915)
+.+..+..++||.+.|++...-|...-+++.+.|.+|+||-- +.++.-..+. .-..+++++.+..+...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 355677789999999999999998888999999999999963 3444433333 34578999999999999999999999
Q ss_pred EEEEECCCC---CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe--ecCceEEEEecCCCEE
Q 002495 701 VRVWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRY 775 (915)
Q Consensus 701 I~iWdl~~~---~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~l 775 (915)
|.-+.+... ....+.+..|...|..+-|+.... .+++++.|..+.---.+.+..+..+ ......+.+.-. ..
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 999877542 334567778999999999987755 4558888877655444554443322 222222222222 45
Q ss_pred EEEEcCCeEEEEEC--CCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEE
Q 002495 776 LAAAAENVVSILDA--ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 852 (915)
Q Consensus 776 l~~~~dg~I~i~D~--~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i 852 (915)
+++...+.|.+..+ ..-..+.++.+|...+.+++|.+...+|.+|..| .|.+||+.-. .....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--KGTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--cceeeeeccchhhhhhh
Confidence 55555666665543 4457888999999999999999999999999999 9999999643 34566777888888888
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCC
Q 002495 853 VFHPTYPSLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 853 ~~spdg~~l~s~s~dg~I~iwd~~~ 877 (915)
..-+--+.+++++.|+.|.+||.+.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 8888888999999999999999864
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.5e-11 Score=128.80 Aligned_cols=289 Identities=16% Similarity=0.217 Sum_probs=201.2
Q ss_pred ccccccCccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCC---------------cEEEEECCCCceeeEeccCCCc-
Q 002495 616 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK---------------KAVLWHTDTLKSKTNLEEHSSL- 679 (915)
Q Consensus 616 ~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg---------------~V~vwd~~t~~~~~~l~~h~~~- 679 (915)
.+..+.+..+..+..++ ...|..+.|+|.++||.+-+... .+.|||+.++..+..+..-..+
T Consensus 54 ~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~ 131 (561)
T COG5354 54 GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY 131 (561)
T ss_pred ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc
Confidence 33344444444333333 34699999999999999976443 4999999999999999877665
Q ss_pred -EE-EEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEecc-CCCCeEEEEEcCCCCe-EEEE-----EeCCCcEEEEEc
Q 002495 680 -IT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDD-LICS-----CDGDGEIRYWSI 750 (915)
Q Consensus 680 -V~-~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~-h~~~V~sl~fsp~~~~-ll~s-----~s~Dg~I~iwdl 750 (915)
.. -+.|+.+++++|-. ....++|+++ ++.....-+.. ....|....|+|.+++ .||. .+.++.+++|.+
T Consensus 132 ~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI 209 (561)
T COG5354 132 LGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSI 209 (561)
T ss_pred cccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEc
Confidence 55 67899888877655 3455999997 32222111111 1356888899987432 2222 456889999999
Q ss_pred CCCeeEEE---eecCceEEEEecCCCEEEEEEc-----------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCE
Q 002495 751 NNGSCTRV---FKGGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL 816 (915)
Q Consensus 751 ~~~~~~~~---~~~~~~~v~~sp~~~~ll~~~~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~ 816 (915)
..++.+.. ++.....+.|.+.+..+++-.. +..++|++++...+.... .-.++|...+|.|.++.
T Consensus 210 p~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~ 288 (561)
T COG5354 210 PKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSR 288 (561)
T ss_pred cCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCc
Confidence 87766554 3456677889999887766322 357889998865554443 56789999999998886
Q ss_pred EEEEe--CC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCe
Q 002495 817 LASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLI 890 (915)
Q Consensus 817 Las~s--~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg---~I~iwd~~~~~~~~~~~h~~~V 890 (915)
+++++ .. .+.++|++.. .... .....-..+.|+|.++++++++.|+ .|.+||......+.-.-.....
T Consensus 289 F~vi~g~~pa~~s~~~lr~N----l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~ 362 (561)
T COG5354 289 FAVISGYMPASVSVFDLRGN----LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT 362 (561)
T ss_pred eeEEecccccceeecccccc----eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc
Confidence 66555 44 8999999754 2222 2244556778999999999999874 8999999887666323233344
Q ss_pred EEEEEeCCCCEEEEEe------cCCcEEEcC
Q 002495 891 AALAVSTETGYVASAS------HDKFVKLWK 915 (915)
Q Consensus 891 ~~l~~spdg~~Lasgs------~Dg~I~IWd 915 (915)
.-+.|+||+.++.+.. .|..|+||+
T Consensus 363 s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 363 SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred eEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 5568999999887764 477899986
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-13 Score=144.21 Aligned_cols=219 Identities=17% Similarity=0.241 Sum_probs=148.4
Q ss_pred ceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCC-CCeEEEEEeCCCcEE
Q 002495 668 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIR 746 (915)
Q Consensus 668 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~s~s~Dg~I~ 746 (915)
.....+.+|.+.|.|+.|+.+|.+|++|++|-.|.|||.-..+.....-++|...|.++.|.|. ++.++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3456688999999999999999999999999999999998644444556799999999999985 566888999999999
Q ss_pred EEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-e
Q 002495 747 YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-S 824 (915)
Q Consensus 747 iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~ 824 (915)
+||+...+.-..-.+ ..+..+.+..|...|..|+..|++ ..+.++++| +
T Consensus 121 lfdl~~~~~~~~d~~-----------------------------~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHG-----------------------------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred EEecccccccccccC-----------------------------ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence 999986432111000 011222334577778888888877 577788888 8
Q ss_pred EEEEECCCCCCcc----eE---EEeccCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCC--------Cc---------
Q 002495 825 VRVWTVGSGSEGE----CV---HELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSE--------NK--------- 879 (915)
Q Consensus 825 I~iwdl~s~~~~~----~i---~~~~~~~~~i~~i~~spdg-~~l~s~s~dg~I~iwd~~~--------~~--------- 879 (915)
|+-||++....-. +. ..+...--...++.++|.. .+|++|+.|-..++||.+. ++
T Consensus 172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~ 251 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDC 251 (758)
T ss_pred eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCccc
Confidence 8888887532110 10 1111112345678888865 5688888888999999431 11
Q ss_pred -EE--EEcccC--------C---CeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 880 -TM--TLTAHE--------G---LIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 880 -~~--~~~~h~--------~---~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
++ ...+|. . .++-++|+|+|.-|+..-....|++||
T Consensus 252 ~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfd 301 (758)
T KOG1310|consen 252 RCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFD 301 (758)
T ss_pred chhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEe
Confidence 12 112232 1 245678899987555443344577764
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=130.05 Aligned_cols=205 Identities=19% Similarity=0.244 Sum_probs=154.1
Q ss_pred cceeeeEee-cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeE--------------e---------------
Q 002495 624 SFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--------------L--------------- 673 (915)
Q Consensus 624 ~~~~~~~l~-~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~--------------l--------------- 673 (915)
+.+.+..++ .|...|+.+..-|+ ..|.+-+.|+.+.+|++.-...+.. +
T Consensus 44 t~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~ 122 (323)
T KOG0322|consen 44 TERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPS 122 (323)
T ss_pred cCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCC
Confidence 334555666 67778888888886 4677888899999998754211100 0
Q ss_pred ------------------------ccCCCcEEEEEECC-CCC--EEEEEeCCCeEEEEECCCCC---------ceEEEec
Q 002495 674 ------------------------EEHSSLITDVRFSP-SMP--RLATSSFDKTVRVWDADNPG---------YSLRTFM 717 (915)
Q Consensus 674 ------------------------~~h~~~V~~l~fsp-dg~--~Lasgs~Dg~I~iWdl~~~~---------~~~~~~~ 717 (915)
....+.|.|..|.. +++ +|++|-++|.|.+||+.+.. +.+....
T Consensus 123 rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~a 202 (323)
T KOG0322|consen 123 RGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNA 202 (323)
T ss_pred cccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchh
Confidence 01234466666543 333 35666779999999999742 2233445
Q ss_pred cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC--e-----eEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002495 718 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--S-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 790 (915)
Q Consensus 718 ~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~--~-----~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 790 (915)
.|..+|.++.|.+.-..=+ +++.+..+..|++... . .+..-..++..+++-||++.+++++.|++|+||..+
T Consensus 203 sh~qpvlsldyas~~~rGi-sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 203 SHKQPVLSLDYASSCDRGI-SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred hccCcceeeeechhhcCCc-CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence 7999999999987543334 7888888999988753 2 222334577889999999999999999999999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002495 791 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 830 (915)
Q Consensus 791 t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl 830 (915)
+..++..++-|...|++++|+|+..++++++.| .|.+|++
T Consensus 282 tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999 9999986
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-11 Score=138.33 Aligned_cols=230 Identities=20% Similarity=0.228 Sum_probs=157.4
Q ss_pred CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCC---CeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCC
Q 002495 657 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 733 (915)
Q Consensus 657 g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~ 733 (915)
..|.++|.+.. ..+.+..+...+.+.+|+||+++|+.++.+ ..|++||+.+ +.. ..+..+...+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~-~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-GQR-EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCC
Confidence 46788887543 345555677789999999999999988754 4799999987 332 33344556677899999998
Q ss_pred eEEEEEeCCC--cEEEEEcCCCeeEEEeec--CceEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEecCCCCCeE
Q 002495 734 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 806 (915)
Q Consensus 734 ~ll~s~s~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~ 806 (915)
.++++.+.++ .|++||+.++........ ......|++++..++.++.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776555 588999988765443322 23457899999988877653 2 6888898877643 3333556677
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 002495 807 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 879 (915)
Q Consensus 807 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg---~I~iwd~~~~~ 879 (915)
.+.|+|+|++|+.++.+ .|.+||+.++.. . .+.. ........|+|++++|+..+.++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~---~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-R---VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-E---EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 88999999988877655 688888876421 2 2221 12234568999999998887764 56666765544
Q ss_pred EEEEcccCCCeEEEEE
Q 002495 880 TMTLTAHEGLIAALAV 895 (915)
Q Consensus 880 ~~~~~~h~~~V~~l~~ 895 (915)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 4444444455554444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-11 Score=138.83 Aligned_cols=200 Identities=16% Similarity=0.219 Sum_probs=144.4
Q ss_pred eEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeEEE--eecCceEEEEecCCCEE
Q 002495 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRY 775 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~--Dg~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~l 775 (915)
.|.+||.+ +...+.+..|...+.+.+|+||++.++++... +..|++||+.+++.... +.+......|+|++..+
T Consensus 183 ~l~~~d~d--g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQD--GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCC--CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 68888875 44556677788899999999999877765432 46899999998865432 34556678999999987
Q ss_pred EEEE-cCC--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCc
Q 002495 776 LAAA-AEN--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 848 (915)
Q Consensus 776 l~~~-~dg--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~ 848 (915)
+... .++ .|++||++++... .+..+.......+|+|||+.|+..+.. .|++||+..+. ...+......
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~~ 335 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGGR 335 (435)
T ss_pred EEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCCc
Confidence 6554 344 5888899887654 455566667789999999988877643 68888876542 2222223445
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEec
Q 002495 849 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 907 (915)
Q Consensus 849 i~~i~~spdg~~l~s~s~dg---~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~ 907 (915)
+....|+|+|++|+....++ .|.+||+..+....+. ....+..+.|+|||++|+..+.
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEc
Confidence 66788999999998877543 6889998766544332 3345778999999998877654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-13 Score=144.11 Aligned_cols=228 Identities=14% Similarity=0.183 Sum_probs=182.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE
Q 002495 677 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 756 (915)
Q Consensus 677 ~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~ 756 (915)
...-..+.|+.+|+.|+.|+..|.|..+|+.+ +.....+. -...|.++.|..+.. +| +......++|||-. |..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~-v~Etv~Dv~~LHneq-~~-AVAQK~y~yvYD~~-GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEIN-VMETVRDVTFLHNEQ-FF-AVAQKKYVYVYDNN-GTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeee-hhhhhhhhhhhcchH-HH-HhhhhceEEEecCC-CcEE
Confidence 34456789999999999999999999999998 44444443 456788999987643 55 44457889999965 5555
Q ss_pred EEee--cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002495 757 RVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 833 (915)
Q Consensus 757 ~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 833 (915)
+.++ ..+..+.|.|..-.|++++..|.+...|+.+|+.+..+....+.+..++-+|-.-.+-+|..+ +|.+|.-.+.
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 5554 356778899987777778888999999999999999998888999999999988888888877 9999998765
Q ss_pred CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEE
Q 002495 834 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 912 (915)
Q Consensus 834 ~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~ 912 (915)
..+..+-+|.+.|.+++++++|.|+++.|.|+.|+|||++....+ ++.. ..+...++||..| +++++....|.
T Consensus 284 ---ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~ 357 (545)
T KOG1272|consen 284 ---EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQ 357 (545)
T ss_pred ---chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeee
Confidence 667777889999999999999999999999999999999987755 3333 5567788887766 33344555788
Q ss_pred EcC
Q 002495 913 LWK 915 (915)
Q Consensus 913 IWd 915 (915)
||+
T Consensus 358 iw~ 360 (545)
T KOG1272|consen 358 IWK 360 (545)
T ss_pred eeh
Confidence 985
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-10 Score=135.30 Aligned_cols=232 Identities=16% Similarity=0.102 Sum_probs=159.6
Q ss_pred cEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCC---CeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCe
Q 002495 658 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 734 (915)
Q Consensus 658 ~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ 734 (915)
.|.++|.+... ...+..+...+...+|+|||+.|+..+.+ ..|.+||+.+ +.. ..+....+.+...+|+|+++.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccCCCCCcCCeEECCCCCE
Confidence 47777876544 45565677789999999999999877654 3689999986 332 333334445567899999998
Q ss_pred EEEEEeCCC--cEEEEEcCCCeeEEEeec--CceEEEEecCCCEEEEEEc-C--CeEEEEECCCceEEEEecCCCCCeEE
Q 002495 735 LICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 807 (915)
Q Consensus 735 ll~s~s~Dg--~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~s 807 (915)
++++...+| .|++||+.+++....... ......|+|++..++..+. + ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 688889998875543322 3455789999998887765 2 368888988876543222 2233445
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 002495 808 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT 880 (915)
Q Consensus 808 i~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg---~I~iwd~~~~~~ 880 (915)
..|+|+|++|+..+.+ .|.+||+.++.. ..+ .. ........|+|+|+.++..+.++ .|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999988876643 588899887632 222 11 11223458999999998887653 688888876665
Q ss_pred EEEcccCCCeEEEEEeCC
Q 002495 881 MTLTAHEGLIAALAVSTE 898 (915)
Q Consensus 881 ~~~~~h~~~V~~l~~spd 898 (915)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566666677777788763
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-11 Score=126.11 Aligned_cols=227 Identities=18% Similarity=0.252 Sum_probs=141.4
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 630 ~l~~H~~~V~~lafspdg~~Lasgs~-Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~ 708 (915)
.-.+| ..|+++.|.+||..|++++. |..|.|||.+++..+.......+.++-+.|+||+.+|+++..|+..++|....
T Consensus 191 ~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 191 QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence 34456 78999999999999999985 56899999999887776656677899999999999999999999999997665
Q ss_pred CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002495 709 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 788 (915)
Q Consensus 709 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 788 (915)
.....+ ..-..+.|...+|+|+|..+|++++..-. +|.+.-...-..+.+ .++......+-|
T Consensus 270 ~wt~er-w~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~---------------~~~~k~~lliaD 331 (445)
T KOG2139|consen 270 SWTKER-WILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLR---------------PQSIKRVLLIAD 331 (445)
T ss_pred cceecc-eeccCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccC---------------cccceeeeeecc
Confidence 232233 33345599999999999999988875544 443321111111110 111112222333
Q ss_pred CCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeccCCCceEEEEEeC---
Q 002495 789 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP--- 856 (915)
Q Consensus 789 ~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d---------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp--- 856 (915)
+..-....--.--.+++.+++|+|.|++|++.-.+ .|.+||.+..........-...+.....+.|+|
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n 411 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKN 411 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeeccc
Confidence 32211100001124678899999999999987655 255677664422222211111122234445554
Q ss_pred CCCEEEEEEcCCeEEEEEC
Q 002495 857 TYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 857 dg~~l~s~s~dg~I~iwd~ 875 (915)
++..|.++=..|.|.-|++
T Consensus 412 ~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 412 EGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CCcEEEEEeccCceEeeee
Confidence 4455555555666666654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.2e-12 Score=145.73 Aligned_cols=263 Identities=16% Similarity=0.208 Sum_probs=185.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEec------cCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEC
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------EHS--SLITDVRFSPSMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~------~h~--~~V~~l~fspdg~~Lasgs~Dg~I~iWdl 706 (915)
-++++++.+-. ++|++|. --.|.+||+..+..+..+. .|. +.+. -.+.+++++..-+.+.+-+.
T Consensus 7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecch
Confidence 34566666654 4666654 4579999998876655443 340 0000 12335555554444443333
Q ss_pred CCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceE-------EEEecCCCEEEEEE
Q 002495 707 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-------MRFQPHLGRYLAAA 779 (915)
Q Consensus 707 ~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~-------v~~sp~~~~ll~~~ 779 (915)
.. ..... ..+.|....+..+.. .++....+..+.+||...+...........+ +-++++.-++++++
T Consensus 79 ~~--~~~~~---~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 79 SN--QIIER---FSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred hh--hhhhh---ccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc
Confidence 21 11222 223344344444433 4456677899999999988766655443322 22344445677777
Q ss_pred cCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002495 780 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 858 (915)
Q Consensus 780 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg 858 (915)
.-+.|.+|+....+.-..+.+|++.|.++.|+.||.++++.++| ++|+|++.+.+... ...-+|...+..++|+|+
T Consensus 153 v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN- 229 (967)
T ss_pred ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc-
Confidence 78999999988554444688999999999999999999999999 99999999875444 355678899999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEEcccC-CCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 859 PSLLVIGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 859 ~~l~s~s~dg~I~iwd~~~~~~~~~~~h~-~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
++++++.|-+.++|+......-.+..|. ..|+.++..++...++|++.|+.|++|+
T Consensus 230 -~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred -eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 8999999999999987766666777775 4799999999999999999999999996
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.1e-10 Score=122.40 Aligned_cols=256 Identities=10% Similarity=0.080 Sum_probs=169.5
Q ss_pred CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeC----------CCeEEEEECCCCCceEEEeccCC------
Q 002495 657 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMGHS------ 720 (915)
Q Consensus 657 g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~I~iWdl~~~~~~~~~~~~h~------ 720 (915)
++|.|.|.++++.+.++..-..+-. + ++||++.|++++. +..|.|||+.+ .+.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhc
Confidence 8999999999999988875444333 4 9999998887765 78899999998 56665555322
Q ss_pred -CCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCC-ceE-EE
Q 002495 721 -ASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-QAC-RL 796 (915)
Q Consensus 721 -~~V~sl~fsp~~~~ll~s~s~-Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t-~~~-~~ 796 (915)
.....++++|+|+.++++--. +..|.++|+.+++.+..+..+.....+-.....+++-+.|+....+.+.+ ++. ..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 223468999999988866534 89999999999999988875443333322223333444555444433322 221 11
Q ss_pred E---ecCCCCCeE-EEEEcC-CCCEEEEEeCCeEEEEECCCCCC--cceEEEecc-------CCCceEEEEEeCCCCEEE
Q 002495 797 S---LQGHTKPID-SVCWDP-SGELLASVSEDSVRVWTVGSGSE--GECVHELSC-------NGNKFHSCVFHPTYPSLL 862 (915)
Q Consensus 797 ~---l~~h~~~V~-si~~sp-dg~~Las~s~d~I~iwdl~s~~~--~~~i~~~~~-------~~~~i~~i~~spdg~~l~ 862 (915)
. +.....++. .-.|.+ +|.++++..++.|.+.|+..... ...+..+.. ....+.-+++++++++++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 111011110 013455 88888888888999999754321 112222111 122334489999999998
Q ss_pred EEE----------cCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-cCCcEEEcC
Q 002495 863 VIG----------CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 915 (915)
Q Consensus 863 s~s----------~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~Lasgs-~Dg~I~IWd 915 (915)
+.. ..+.|.++|..+++.+....-...+..|++++|++ +|++.+ .++.|.|+|
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 853 12489999999999996666677999999999999 877666 578788875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-10 Score=127.95 Aligned_cols=268 Identities=14% Similarity=0.190 Sum_probs=180.9
Q ss_pred CeEEEEEcCCCCEEEEEEC-----------CCcEEEEECCCCceeeEeccCC--CcE-EEEEECCCCCEEEEEeCCCeEE
Q 002495 637 KVICCHFSSDGKLLATGGH-----------DKKAVLWHTDTLKSKTNLEEHS--SLI-TDVRFSPSMPRLATSSFDKTVR 702 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~-----------Dg~V~vwd~~t~~~~~~l~~h~--~~V-~~l~fspdg~~Lasgs~Dg~I~ 702 (915)
.|.-+.|||..+||+|-+. ...|+|||+.+|..++.|.... ..+ .-..||.|++++|.-..| .|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEE
Confidence 4889999999999999763 1479999999999988887632 222 245899999999887764 599
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEe-C----CCcEEEEEcCCCeeEEEee---cCceEEEEecCCCE
Q 002495 703 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-G----DGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGR 774 (915)
Q Consensus 703 iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s-~----Dg~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ 774 (915)
||+..+ -..+..-.-.-..|....|+|.+. +||--. . -..+.+-.+.++..+++.. -....+.|...+.+
T Consensus 330 IyEtps-f~lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 330 IYETPS-FMLLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEecCc-eeeecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 998875 222222222345688889999854 443211 1 2356677777776666533 23344667777666
Q ss_pred EEEEEc-------C---CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECC-CCCCcceE
Q 002495 775 YLAAAA-------E---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG-SGSEGECV 839 (915)
Q Consensus 775 ll~~~~-------d---g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~-s~~~~~~i 839 (915)
|.+-.. . ..+.|+.++..........-...|...+|.|.|+.+++-+.. ++.+|.++ +......+
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 655322 1 145566666554333333345778899999999966655443 79999998 44455555
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCc--EEEEcccCCCeEEEEEeCCCCEEEEEecCCc
Q 002495 840 HELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENK--TMTLTAHEGLIAALAVSTETGYVASASHDKF 910 (915)
Q Consensus 840 ~~~~~~~~~i~~i~~spdg~~l~s~s~---dg~I~iwd~~~~~--~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~ 910 (915)
..+. ....+.+.|+|.|+++++++- .|.+.++|..-.. .+....| ...+.+.|.|.|+|+++++.-+.
T Consensus 488 k~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 488 KELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred hhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhh
Confidence 5554 356788899999999888754 5799999998533 3333344 34678899999999999986443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-10 Score=134.91 Aligned_cols=231 Identities=15% Similarity=0.141 Sum_probs=155.1
Q ss_pred cEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCC-C--eEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCe
Q 002495 658 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 734 (915)
Q Consensus 658 ~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g--~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ 734 (915)
.|.++|.+... .+.+..+...+.+..|+|||+.|+..+.+ + .|++||+.+ +.. ..+..........+|+|+++.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-g~~-~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-QVR-EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCC-CCe-EEecCCCCCcCCeeECCCCCE
Confidence 56777865543 34555667789999999999999877643 3 588889886 332 222222334457899999998
Q ss_pred EEEEEeCCCc--EEEEEcCCCeeEEEeec--CceEEEEecCCCEEEEEEc-C--CeEEEEECCCceEEEEecCCCCCeEE
Q 002495 735 LICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 807 (915)
Q Consensus 735 ll~s~s~Dg~--I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~s 807 (915)
++++.+.+|. |++||+.+++....... ......|+|++..++..+. + ..|+++|+.+++..... ........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8877777775 78889888765543332 3456889999998877765 3 36777888877654322 12233445
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 002495 808 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT 880 (915)
Q Consensus 808 i~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg---~I~iwd~~~~~~ 880 (915)
.+|+|||++|+..+.+ .|.++|+.++.. .. +... .......|+|+++.|+..+.++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~---lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QV---LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe-EE---ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7999999988776543 466678766532 11 2211 1222457999999988877653 478888865555
Q ss_pred EEEcccCCCeEEEEEeC
Q 002495 881 MTLTAHEGLIAALAVST 897 (915)
Q Consensus 881 ~~~~~h~~~V~~l~~sp 897 (915)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56666667788888876
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-09 Score=115.00 Aligned_cols=263 Identities=16% Similarity=0.161 Sum_probs=186.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCC--Cceee--EeccCCCcEEEEEECCCCCEEEEEeC-CCeEEEE
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDT--LKSKT--NLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVW 704 (915)
Q Consensus 633 ~H~~~V~~lafspdg~~Lasgs~D---g~V~vwd~~t--~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~iW 704 (915)
.+.+.++-|+|+++.++|+++..+ |.|..|.++. |+... .......+-+.|++++++++|+++.+ .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 456789999999999999998654 7888888774 44322 22223334488999999999999987 6899999
Q ss_pred ECCCCCceEE--EeccCCCC----------eEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----e--cCceEE
Q 002495 705 DADNPGYSLR--TFMGHSAS----------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K--GGTAQM 766 (915)
Q Consensus 705 dl~~~~~~~~--~~~~h~~~----------V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~----~--~~~~~v 766 (915)
-+...+.... ....|.+. +.+..|.|++++++++.-.--.|.+|++..+++...- + .+...+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 9976554322 22335554 8889999998877755555578999999987654332 2 355779
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCc-eEEEEecC---------CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC
Q 002495 767 RFQPHLGRYLAAAA-ENVVSILDAETQ-ACRLSLQG---------HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 833 (915)
Q Consensus 767 ~~sp~~~~ll~~~~-dg~I~i~D~~t~-~~~~~l~~---------h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~ 833 (915)
.|+|+++..++.++ +++|.+|..... ..+..+.. ...+...|.+++||++|+++... .|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999998888777 899999988763 22222211 23456788999999999999877 8899988654
Q ss_pred C-CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECC--CCcEEEEc--ccCCCeEEEEE
Q 002495 834 S-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMS--ENKTMTLT--AHEGLIAALAV 895 (915)
Q Consensus 834 ~-~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg-~I~iwd~~--~~~~~~~~--~h~~~V~~l~~ 895 (915)
. ....+.....++..-..+.|.+++++|+++..+. .|.+|.++ +|++..+. .......||.|
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 2 3445555555666688899999999999999875 78888654 55544222 23344455555
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=6e-11 Score=121.26 Aligned_cols=108 Identities=23% Similarity=0.477 Sum_probs=86.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEE
Q 002495 801 HTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWN 874 (915)
Q Consensus 801 h~~~V~si~~spdg~~Las~s--~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~d---g~I~iwd 874 (915)
..++|.+++|+|+|+.|++.. .+ .|.+||++ ...+..+. ...+..+.|+|+|++|++++.+ |.|.|||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 345799999999999766553 34 89999995 24455443 5677889999999999999865 5799999
Q ss_pred CCCCcEEEEcccCCCeEEEEEeCCCCEEEEEec------CCcEEEcC
Q 002495 875 MSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKFVKLWK 915 (915)
Q Consensus 875 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~------Dg~I~IWd 915 (915)
+++.+.+....|.. ++.++|+|||++|+++.. |+.++||+
T Consensus 132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 99888886666654 789999999999999874 78888885
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-09 Score=126.04 Aligned_cols=236 Identities=15% Similarity=0.135 Sum_probs=154.9
Q ss_pred CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCE--E-EEEeCCC--eEEEEECCCCCceEEEeccCCCCeEEEEEcCC
Q 002495 657 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR--L-ATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 731 (915)
Q Consensus 657 g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~--L-asgs~Dg--~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~ 731 (915)
+.|.+.|.+.+. ...+......+..-+|+|||+. + ++...+| .|++.++.. +. .+.+....+.....+|+||
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~-g~-~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN-PA-GKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCC-CC-ceEeecCCCCccceEECCC
Confidence 357777776544 3445555666788899999985 3 2444444 477778875 32 2333334455567899999
Q ss_pred CCeEEEEEeCCC----cEEEEEcCCC---eeEEEeec---CceEEEEecCCCEEEEEEc-CCe--EEEEECCC-ceEEEE
Q 002495 732 KDDLICSCDGDG----EIRYWSINNG---SCTRVFKG---GTAQMRFQPHLGRYLAAAA-ENV--VSILDAET-QACRLS 797 (915)
Q Consensus 732 ~~~ll~s~s~Dg----~I~iwdl~~~---~~~~~~~~---~~~~v~~sp~~~~ll~~~~-dg~--I~i~D~~t-~~~~~~ 797 (915)
|+.++++...+| .+.+|++..+ +....... .....+|+|++..|+..+. ++. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887765443 3444777653 33333322 2356799999998887764 554 55556542 233344
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 002495 798 LQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSL 870 (915)
Q Consensus 798 l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~d---g~I 870 (915)
+..+...+....|+|||+.|+..+.+ .|.+||+.++.. ..+......+....|+|||++|+....+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 44455667889999999988876543 699999987642 2222223456778999999988876543 479
Q ss_pred EEEECCCCcEEEEcccCCCeEEEEEeCCC
Q 002495 871 ELWNMSENKTMTLTAHEGLIAALAVSTET 899 (915)
Q Consensus 871 ~iwd~~~~~~~~~~~h~~~V~~l~~spdg 899 (915)
++||+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999998877666666777788888743
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=118.41 Aligned_cols=148 Identities=13% Similarity=0.281 Sum_probs=110.3
Q ss_pred EEEEECCCCCEEEEEeC----------CCeEEEEECCCCCceEEEecc-CCCCeEEEEEcCCCCeEEEE-EeCCCcEEEE
Q 002495 681 TDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICS-CDGDGEIRYW 748 (915)
Q Consensus 681 ~~l~fspdg~~Lasgs~----------Dg~I~iWdl~~~~~~~~~~~~-h~~~V~sl~fsp~~~~ll~s-~s~Dg~I~iw 748 (915)
..+.|+++|++|++-.. -+...||.++..+..+..+.- ..+.|.+++|+|++..+++. |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987765433 134566666544444444433 34579999999999887544 4567899999
Q ss_pred EcCCCeeEEEee-cCceEEEEecCCCEEEEEEc---CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC--
Q 002495 749 SINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-- 822 (915)
Q Consensus 749 dl~~~~~~~~~~-~~~~~v~~sp~~~~ll~~~~---dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~-- 822 (915)
|++ ++.+..+. .....+.|+|++..+++++. .|.|.+||+++.+.+.++. | ..++.++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence 997 55555654 35678999999999999875 3679999999988887765 3 34789999999999998763
Q ss_pred ----C-eEEEEECC
Q 002495 823 ----D-SVRVWTVG 831 (915)
Q Consensus 823 ----d-~I~iwdl~ 831 (915)
| .++||++.
T Consensus 166 r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQ 179 (194)
T ss_pred ceeccccEEEEEec
Confidence 4 78999984
|
|
| >KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-12 Score=130.96 Aligned_cols=65 Identities=32% Similarity=0.761 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCCcccCCCCCchhHhHHHHHHHHHHhhccc
Q 002495 5 NWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEK 70 (915)
Q Consensus 5 ~~~~~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~~~~~~~d~~~~fL~eWw~~fwdif~a~~~~~ 70 (915)
.-.|+|.|..||||||++.++.++|+.|+.|-....+ ..+..+.+||.+|||||||+|.|.-.++
T Consensus 13 d~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRR 77 (354)
T KOG4594|consen 13 DSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERR 77 (354)
T ss_pred chhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCcccc
Confidence 3468999999999999999999999999999887655 6678899999999999999998865443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-10 Score=129.88 Aligned_cols=218 Identities=19% Similarity=0.257 Sum_probs=143.5
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEECC-C--cEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEE-EeCCCe--EEE
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHD-K--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKT--VRV 703 (915)
Q Consensus 630 ~l~~H~~~V~~lafspdg~~Lasgs~D-g--~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~--I~i 703 (915)
.+..+...+.+.+|+|||+.|+..+.+ + .|++||+.+++... +..........+|+|||+.|+. .+.++. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 444566788999999999998877643 2 58889998776433 2222334457899999998865 455665 777
Q ss_pred EECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc--EEEEEcCCCeeEEEe-ecC-ceEEEEecCCCEEEEEE
Q 002495 704 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVF-KGG-TAQMRFQPHLGRYLAAA 779 (915)
Q Consensus 704 Wdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~--I~iwdl~~~~~~~~~-~~~-~~~v~~sp~~~~ll~~~ 779 (915)
||+++ + ..+.+..+...+...+|+||++.+++++..++. |+++|+.+++..+.. .+. .....|+|+++.++...
T Consensus 291 ~dl~t-g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIAT-K-ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCC-C-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 78875 3 344555566667789999999988877765554 666788777655432 222 23468999999888776
Q ss_pred cC-C--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEE
Q 002495 780 AE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSC 852 (915)
Q Consensus 780 ~d-g--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i 852 (915)
.+ + .|.++|+.+++... +... .......|+|||++|+..+.+ .+++++.. + .....+......+...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G---~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G---RFKARLPAGQGEVKSP 442 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-C---CceEECcCCCCCcCCC
Confidence 53 3 56778988876543 2222 122345899999977765543 36677763 3 2333344444556666
Q ss_pred EEeC
Q 002495 853 VFHP 856 (915)
Q Consensus 853 ~~sp 856 (915)
+|+|
T Consensus 443 ~Wsp 446 (448)
T PRK04792 443 AWSP 446 (448)
T ss_pred ccCC
Confidence 7766
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-10 Score=127.39 Aligned_cols=202 Identities=16% Similarity=0.238 Sum_probs=143.8
Q ss_pred eEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeEEE--eecCceEEEEecCCCEE
Q 002495 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRY 775 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~D--g~I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~~l 775 (915)
.|.++|.+. ...+.+..+...+.+.+|+|+++.++++...+ ..|++||+.+++.... +.+....+.|+|++..+
T Consensus 171 ~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDG--ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCC--CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 577888753 33455666777899999999998877655433 5799999998865433 33455678999999888
Q ss_pred EEEEc-C--CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCc
Q 002495 776 LAAAA-E--NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 848 (915)
Q Consensus 776 l~~~~-d--g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~ 848 (915)
++... + ..|++||+.++... .+..+........|+|||+.|+.++.. .|++||+.++. ...+..+...
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~~ 323 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGGY 323 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCC
Confidence 76543 3 36899999887543 334455555678999999988766543 57888876543 2233334556
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCC
Q 002495 849 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 909 (915)
Q Consensus 849 i~~i~~spdg~~l~s~s~dg---~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg 909 (915)
+..+.|+|++++|+.++.++ .|.+||+.++....+... ......+|+|++++|+.++.++
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 77889999999999988876 899999988766544433 2345678999999888877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.7e-10 Score=124.13 Aligned_cols=184 Identities=18% Similarity=0.278 Sum_probs=146.7
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeeEecc---CCCcEEEEEEC------C--------------CCCEEEEEeCCCeE
Q 002495 645 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITDVRFS------P--------------SMPRLATSSFDKTV 701 (915)
Q Consensus 645 pdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~---h~~~V~~l~fs------p--------------dg~~Lasgs~Dg~I 701 (915)
+-..++|....||.++|||+.+++....|.. -++..++..|. | +-..|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4557999999999999999998877766642 23445555551 1 33467888889999
Q ss_pred EEEECCCCCceEEEec--cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec---CceEEEEecCCCEEE
Q 002495 702 RVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 776 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~--~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~---~~~~v~~sp~~~~ll 776 (915)
.+|++.. ++....+. +|.+.|.++.++.+-. .|.+++.|+.|.+|+......++.++. .+..++++|+++.++
T Consensus 83 ~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAG-GEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecC-CeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999987 55555554 6999999999987754 566999999999999999999888875 457799999988877
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCC-----CCEEEEEeCC--eEEEEECCC
Q 002495 777 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-----GELLASVSED--SVRVWTVGS 832 (915)
Q Consensus 777 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd-----g~~Las~s~d--~I~iwdl~s 832 (915)
+++ +.|.+||+++++.+.+|.+|.++|+++.|.-+ |.+++++... .|.+|-++.
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 665 68999999999999999999999999999876 7777665543 788887765
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.5e-10 Score=127.91 Aligned_cols=220 Identities=19% Similarity=0.217 Sum_probs=147.6
Q ss_pred eeEeecCCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEE-eCCC--eE
Q 002495 628 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDK--TV 701 (915)
Q Consensus 628 ~~~l~~H~~~V~~lafspdg~~Lasgs~D---g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg--~I 701 (915)
...+..+...+...+|+|||+.|+..+.+ ..|.+||+++++... +....+.+.+.+|+|||+.|+.. +.+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34555677889999999999999887654 369999998876543 33334456678999999988754 4454 58
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeEEEee-c-CceEEEEecCCCEEEE
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK-G-GTAQMRFQPHLGRYLA 777 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg--~I~iwdl~~~~~~~~~~-~-~~~~v~~sp~~~~ll~ 777 (915)
++||+++ +. ...+..+...+....|+|+++.++++...++ .|++||+.+++..+... + ......|+|+++.++.
T Consensus 270 y~~d~~~-~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLAS-RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCC-CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8889886 33 3445556666777899999998887765554 57778888777544332 2 2345689999999888
Q ss_pred EEcC-C--eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceE
Q 002495 778 AAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFH 850 (915)
Q Consensus 778 ~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~ 850 (915)
...+ + .|.+||+.+++...... ........|+|||++|+..+.+ .|.++++... ....+....+.+.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~ 421 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVR 421 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcC
Confidence 7753 2 58889998876543222 2223356899999988766543 4667776422 2223333344455
Q ss_pred EEEEeC
Q 002495 851 SCVFHP 856 (915)
Q Consensus 851 ~i~~sp 856 (915)
..+|+|
T Consensus 422 ~p~ws~ 427 (430)
T PRK00178 422 EPSWSP 427 (430)
T ss_pred CCccCC
Confidence 556665
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-10 Score=115.58 Aligned_cols=239 Identities=18% Similarity=0.224 Sum_probs=167.4
Q ss_pred CCCCeEEEEEcC---CCC-EEEEEECCCcEEEEECCCCceeeEeccCC------CcEEEEEECCCCCEEEEEeCCCeEEE
Q 002495 634 STSKVICCHFSS---DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 634 H~~~V~~lafsp---dg~-~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~------~~V~~l~fspdg~~Lasgs~Dg~I~i 703 (915)
.+..+..+.|.. +|. .|+-+..+|.|.+|..........+++-+ ....++.|++.+..++++-.+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 345566666653 454 66777788999999876554444444321 23567889999999999999999986
Q ss_pred EECCCCCc--eEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEeecCceEEEEecCCCEEEEEEc
Q 002495 704 WDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 704 Wdl~~~~~--~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~-~~~~~~~~~~~v~~sp~~~~ll~~~~ 780 (915)
-+... .. .+.+++.|...++...|+....+++++|++|+.+..||++..+ ++..
T Consensus 148 v~~t~-~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~---------------------- 204 (339)
T KOG0280|consen 148 VYETE-MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH---------------------- 204 (339)
T ss_pred Eecce-eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee----------------------
Confidence 55543 22 2347889999999999998888999999999999999998322 1110
Q ss_pred CCeEEEEECCCceEEEEecCCCCCeEEEEEcC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002495 781 ENVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 858 (915)
Q Consensus 781 dg~I~i~D~~t~~~~~~l~~h~~~V~si~~sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg 858 (915)
..+.|...|.+|.-+| .+.+|++|+.| .|++||.|+-. +.+..-.. .+.|+.+.++|.-
T Consensus 205 ----------------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--kPl~~~~v-~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 205 ----------------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--KPLFKAKV-GGGVWRIKHHPEI 265 (339)
T ss_pred ----------------cceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--CccccCcc-ccceEEEEecchh
Confidence 1133778888888776 56699999999 99999998543 33333222 4789999999964
Q ss_pred C-EEEEEEcCCeEEEEECCCCcE-----E-EEcccCCCeEEEEEeCCCCEEEEEe-cCCcEE-Ec
Q 002495 859 P-SLLVIGCYQSLELWNMSENKT-----M-TLTAHEGLIAALAVSTETGYVASAS-HDKFVK-LW 914 (915)
Q Consensus 859 ~-~l~s~s~dg~I~iwd~~~~~~-----~-~~~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~-IW 914 (915)
. .+++++..+..+|-+...+.. . ....|.+-+..-.|.....+|+||+ .|+.|+ +|
T Consensus 266 ~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 266 FHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred hhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 3 344445555566666654432 1 4567888888888855556788876 587765 77
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-08 Score=110.62 Aligned_cols=249 Identities=12% Similarity=0.110 Sum_probs=156.3
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCceeeEeccCCC-------cEEEEEEC
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFS 686 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~----------Dg~V~vwd~~t~~~~~~l~~h~~-------~V~~l~fs 686 (915)
+.+.+..+.....+-. + ++|||+.|+++.. +..|.|||+.+++.+..+..... ....++++
T Consensus 36 ~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 36 AGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred CCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence 4556666664443333 4 9999998888765 78999999999999988875322 34478999
Q ss_pred CCCCEEEEEeC--CCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-Cee-E---EEe
Q 002495 687 PSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSC-T---RVF 759 (915)
Q Consensus 687 pdg~~Lasgs~--Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~-~~~-~---~~~ 759 (915)
+||++|++... +..|.|+|+.+ ++.+..+.- .+...-+..+++ .+++ -+.||......+.+ ++. . ..|
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~v-p~~~~vy~t~e~-~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMDV-PDCYHIFPTAND-TFFM--HCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCC-CcEEEEEeC-CCCcEEEEecCC-ccEE--EeecCceEEEEecCCCceEEeeeeee
Confidence 99999998873 68999999998 555655543 222222222222 1111 12244444433322 111 1 111
Q ss_pred ecCc----eEEEEecCCCEEEEEEcCCeEEEEECCCc-----eEEEEecC-------CCCCeEEEEEcCCCCEEEEEe--
Q 002495 760 KGGT----AQMRFQPHLGRYLAAAAENVVSILDAETQ-----ACRLSLQG-------HTKPIDSVCWDPSGELLASVS-- 821 (915)
Q Consensus 760 ~~~~----~~v~~sp~~~~ll~~~~dg~I~i~D~~t~-----~~~~~l~~-------h~~~V~si~~spdg~~Las~s-- 821 (915)
.... ..-.+.+.++..+..+.+|.|++.|+... +....+.. ..+.+.-++++++++.+++..
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence 1100 00134553344444445599999995443 33322221 223344599999999777742
Q ss_pred --------C-CeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEE
Q 002495 822 --------E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTL 883 (915)
Q Consensus 822 --------~-d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~-~l~s~s-~dg~I~iwd~~~~~~~~~ 883 (915)
. +.|.++|..+. +.+..+.. +..+..+++++|++ +|++.. .++.|.++|..+++.+..
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 1 37999999877 55555544 66899999999999 777776 467899999999988743
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.5e-09 Score=116.99 Aligned_cols=254 Identities=13% Similarity=0.065 Sum_probs=161.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCe--
Q 002495 646 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-- 723 (915)
Q Consensus 646 dg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V-- 723 (915)
++..+++++.+|.|+.||.++++.+..............+ .+..++.++.++.|+.||.++ ++.+..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAAT-GERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCC-CceeeEEccCCCceee
Confidence 4668888889999999999999988766543321111112 345777888899999999987 55544443222111
Q ss_pred ---EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCc----e------EEE--EecCCCEEEEEEcCCeEEEEE
Q 002495 724 ---MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMR--FQPHLGRYLAAAAENVVSILD 788 (915)
Q Consensus 724 ---~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~----~------~v~--~sp~~~~ll~~~~dg~I~i~D 788 (915)
.+..+. ++ .++.+..++.|..+|+++++.+....... . .+. ....++.+++++.++.++.||
T Consensus 181 ~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 111122 23 45577788999999999998776543110 0 000 111357888888999999999
Q ss_pred CCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEecc-CCCceEEEEEeCCCCEEEEEEc
Q 002495 789 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC 866 (915)
Q Consensus 789 ~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~-~~~~i~~i~~spdg~~l~s~s~ 866 (915)
.++++.+...... ....... ++..|++++.+ .|..+|..+++ .+..... .......... .+..|++++.
T Consensus 258 ~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 258 LRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred CCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEE--ECCEEEEEeC
Confidence 9999887766521 1222222 35566666666 99999998774 3332211 1111222222 4568999999
Q ss_pred CCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 867 YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 867 dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+|.|++||..+++.+ .+..+...+..--...++ .|+.++.||.|+.|+
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEeC
Confidence 999999999999988 555455443332222333 578889999998874
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-09 Score=123.86 Aligned_cols=211 Identities=12% Similarity=0.116 Sum_probs=138.0
Q ss_pred eEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCe--EEEEEeCCC--cEEEEEcCCCeeE--EEeecCceEEEEecCCC
Q 002495 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDG--EIRYWSINNGSCT--RVFKGGTAQMRFQPHLG 773 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~--ll~s~s~Dg--~I~iwdl~~~~~~--~~~~~~~~~v~~sp~~~ 773 (915)
.|.+.|.+. ...+.+......+.+-+|+|||.. ++++...+| .|++.++.+++.. ..+.+......|+|++.
T Consensus 166 ~l~~~d~dG--~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDG--QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCC--CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 566666653 334455555666778899999876 333454443 5888888877543 34556666789999999
Q ss_pred EEEEEEc-CC----eEEEEECCCc---eEEEEecCCCCCeEEEEEcCCCCEEEEEeC-C---eEEEEECCCCCCcceEEE
Q 002495 774 RYLAAAA-EN----VVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGSEGECVHE 841 (915)
Q Consensus 774 ~ll~~~~-dg----~I~i~D~~t~---~~~~~l~~h~~~V~si~~spdg~~Las~s~-d---~I~iwdl~s~~~~~~i~~ 841 (915)
.|+.... +| .+.+||+..+ +.......+.......+|+|||+.|+..+. + .|+++++.... .....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEE
Confidence 9887764 22 3444676653 333333333334567899999998777663 3 35555553211 12333
Q ss_pred eccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEec-C--CcEEEc
Q 002495 842 LSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH-D--KFVKLW 914 (915)
Q Consensus 842 ~~~~~~~i~~i~~spdg~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-D--g~I~IW 914 (915)
+......+....|+|||++|+..+.+ ..|++||+.+++...+......+....|+|||++|+.... + ..|++|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 33344566788999999999887654 3799999999988766655567788999999998775433 2 345554
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-09 Score=117.88 Aligned_cols=246 Identities=13% Similarity=0.228 Sum_probs=166.3
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCC--EEEE-----EeCCCeEEEEECCCCC-
Q 002495 639 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLAT-----SSFDKTVRVWDADNPG- 710 (915)
Q Consensus 639 ~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Las-----gs~Dg~I~iWdl~~~~- 710 (915)
+++.|+.|..+.|- -..+.|.+|++...+. ..-+-|...|+.+.++|.+. .||+ .+.-+.|+||.+...+
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~-~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKT-IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccc-eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 68999998854443 2356899999887432 22334678899999999743 3332 2445679999886311
Q ss_pred -ce--EEEeccCCCCeEEEEEcCCCCeEEEEEeC--C---------CcEEEEEcCCCeeEEEe--ecCceEEEEecCCCE
Q 002495 711 -YS--LRTFMGHSASVMSLDFHPNKDDLICSCDG--D---------GEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGR 774 (915)
Q Consensus 711 -~~--~~~~~~h~~~V~sl~fsp~~~~ll~s~s~--D---------g~I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ 774 (915)
.. .++|. ...=..+.|++.+.-||+.++. | .+++++++...++.-.+ .+.+.++.|++++..
T Consensus 207 ~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 11 11221 1223347788877766654332 3 36888888855555544 478999999999987
Q ss_pred EEEEEc--CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCc
Q 002495 775 YLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 848 (915)
Q Consensus 775 ll~~~~--dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~ 848 (915)
++++.. -..+.|||++- .+++.+ ..++-+++-|+|.|++|+.++-+ .|.|||+.+. +++..+.. ..
T Consensus 285 F~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a--~~ 356 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKA--AN 356 (566)
T ss_pred EEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhcccccc--CC
Confidence 776654 67999999874 344433 45777889999999998888876 6999999764 55555543 44
Q ss_pred eEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEEEEcccCCCeEEEEEeC
Q 002495 849 FHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTMTLTAHEGLIAALAVST 897 (915)
Q Consensus 849 i~~i~~spdg~~l~s~s~------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 897 (915)
.+.+.|+|||.+|++++. |+.++||++....+... ........++|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~-~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK-MFKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh-hhhHhHhheeeee
Confidence 567899999999999986 57899999876554311 1111566666654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.6e-10 Score=123.13 Aligned_cols=273 Identities=18% Similarity=0.267 Sum_probs=194.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---------------ceeeEeccCCCcEEEEEECCCCCEEEEEeCCC
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---------------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 699 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~---------------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 699 (915)
.....|++|+....++|+|+.||.++|..+.+. ..-.++++|+..|.-+.|+.+...|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 456899999999999999999999999987632 12245789999999999999999999999999
Q ss_pred eEEEEECCCCCceEEEe-ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE-EEeec-CceEEEEecCCCEEE
Q 002495 700 TVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKG-GTAQMRFQPHLGRYL 776 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~-~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~-~~~~~-~~~~v~~sp~~~~ll 776 (915)
.|.||-+-.+..+-..+ ....+.|.+++|..+|..+ +....||.|.+=.++..+.- +.+++ ....+.|+++...++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 99999987643322222 2245678999999998754 57778898887766644322 12332 235688999999999
Q ss_pred EEEcCCeEEEEECCCc-------eEEEEe----cCCCCCeEEEEEc--------CCCCEEEEEeCC-eEEEEECCCCCCc
Q 002495 777 AAAAENVVSILDAETQ-------ACRLSL----QGHTKPIDSVCWD--------PSGELLASVSED-SVRVWTVGSGSEG 836 (915)
Q Consensus 777 ~~~~dg~I~i~D~~t~-------~~~~~l----~~h~~~V~si~~s--------pdg~~Las~s~d-~I~iwdl~s~~~~ 836 (915)
.+-..|.+.+||.... .+.... ......|..++|. ||...|+++-.. .+.|..-.+....
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 9999999999997642 121211 2223346667774 356677777766 6666655444333
Q ss_pred ceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEec
Q 002495 837 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 907 (915)
Q Consensus 837 ~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg---------~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~ 907 (915)
..+.. +-.+..+.|+++|..|+++|.+. .|.+|..-....-++......|++++|--.|-.++.+ .
T Consensus 253 vv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-v 327 (1189)
T KOG2041|consen 253 VVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-V 327 (1189)
T ss_pred eEEec----ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-e
Confidence 33322 46788899999999999998753 5666665444444777788899999998887777765 4
Q ss_pred CCcEEE
Q 002495 908 DKFVKL 913 (915)
Q Consensus 908 Dg~I~I 913 (915)
|+.|++
T Consensus 328 dsfiyf 333 (1189)
T KOG2041|consen 328 DSFIYF 333 (1189)
T ss_pred cceEEE
Confidence 666654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.1e-11 Score=128.88 Aligned_cols=278 Identities=18% Similarity=0.237 Sum_probs=189.6
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-------CceeeEeccCCCcEEEEEECCCCCEEEEEeCCC
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 699 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t-------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 699 (915)
.+..+.+|...|+.++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|..+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3456789999999998888888999999999999999862 33667788999999999999998888765 88
Q ss_pred eEEEEECCCCCceEEEe-----ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--------cCceEE
Q 002495 700 TVRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQM 766 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~-----~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~--------~~~~~v 766 (915)
-|.+||.-- +..+... .+..+.|.|+.- -+...+++.|+...+|+++|.+..+.+..++ +-+.++
T Consensus 805 giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 805 GIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred cceeecccc-cchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 899999764 3332211 122233444321 1233455556889999999999887665543 235678
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEE-EECCCCCCcceEEEecc
Q 002495 767 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV-WTVGSGSEGECVHELSC 844 (915)
Q Consensus 767 ~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~i-wdl~s~~~~~~i~~~~~ 844 (915)
++.+.|++++++-+.|.|.+.|.++|+.+..++..+.....++ .|....|+....| ++.| |...++ ......+.
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg---imh~q~kp 958 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG---IMHLQDKP 958 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC---eeeeccCC
Confidence 8999999999999999999999999998887665444443333 2445566666666 7777 876544 11111111
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-C------cEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 845 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-N------KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 845 ~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~-~------~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
...+.. -.-.-|..+++......+.||.-.. . ..++-....+..++++.-|-+.-++.|++.|.|.+.
T Consensus 959 ppepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaLl 1033 (1034)
T KOG4190|consen 959 PPEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIALL 1033 (1034)
T ss_pred CCcchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceeec
Confidence 111111 1122356677777777888884321 1 122333456778888888877777888899988763
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-10 Score=114.89 Aligned_cols=196 Identities=21% Similarity=0.237 Sum_probs=144.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceee--EeccCCCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCceE
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSL 713 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~--~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~iWdl~~~~~~~ 713 (915)
...++.|++.+..++++-.+|.+.+-+........ .++.|..++....|+. +.+.+++|++|+.+..||++.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 45678899999999999999999976665544444 8899999999999987 45689999999999999999655554
Q ss_pred EE-eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEE--eecCceEEEEecCCC-EEEEEEcCCeEEEEE
Q 002495 714 RT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV--FKGGTAQMRFQPHLG-RYLAAAAENVVSILD 788 (915)
Q Consensus 714 ~~-~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~-~~~~~~--~~~~~~~v~~sp~~~-~ll~~~~dg~I~i~D 788 (915)
.. .+-|...|.+|.-+|....+|++|+.|-.|++||.++ ++.+.. ..+++..+..+|... .+++++.-+-..|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 43 6679999999999998888999999999999999994 454433 346778888887653 455555555666666
Q ss_pred CCCc--e---EEEEecCCCCCeEEEEEcCCCCEEEEEe-CC-eEE-EEECCC
Q 002495 789 AETQ--A---CRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVR-VWTVGS 832 (915)
Q Consensus 789 ~~t~--~---~~~~l~~h~~~V~si~~spdg~~Las~s-~d-~I~-iwdl~s 832 (915)
...+ + .....+.|.+-+..-.|.....+|++++ .| .++ +|-.-+
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 6544 2 3344556776666777755445677765 23 433 665433
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-09 Score=116.25 Aligned_cols=272 Identities=15% Similarity=0.181 Sum_probs=188.5
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCC-----------
Q 002495 631 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK----------- 699 (915)
Q Consensus 631 l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg----------- 699 (915)
+..-.-+|..++|||.|++|++.... .|.+|+...+..+..+. ...|..+.|+|+++||++-+...
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred ccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCc
Confidence 33456789999999999999987654 58999988766555554 34599999999999999976544
Q ss_pred ----eEEEEECCCCCceEEEeccCCCC--eE-EEEEcCCCCeEEEEEeCCCcEEEEEcCCCee----EEEee-cCceEEE
Q 002495 700 ----TVRVWDADNPGYSLRTFMGHSAS--VM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFK-GGTAQMR 767 (915)
Q Consensus 700 ----~I~iWdl~~~~~~~~~~~~h~~~--V~-sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~----~~~~~-~~~~~v~ 767 (915)
.+.|||+.+ +..+..+.....+ .+ -+.|+-++.+.+-. ....|+|+++ +... .+.++ .++....
T Consensus 105 ~~~n~~~vwd~~s-g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFs 180 (561)
T COG5354 105 TSKNNVFVWDIAS-GMIVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFS 180 (561)
T ss_pred cccCceeEEeccC-ceeEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeEE
Confidence 499999998 7788888776665 55 67788775543322 2457899997 3321 22233 4667778
Q ss_pred EecCCC--EEEEE-----EcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEe------------CCeEEEE
Q 002495 768 FQPHLG--RYLAA-----AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS------------EDSVRVW 828 (915)
Q Consensus 768 ~sp~~~--~ll~~-----~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s------------~d~I~iw 828 (915)
|+|.++ .|++- ...+.++||.+..+..+.+..-....-..+.|.+.|++|++-- +..++|+
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 888743 22222 2367999999987766554433333445688999998765421 1257888
Q ss_pred ECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc--CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002495 829 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC--YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 906 (915)
Q Consensus 829 dl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~--dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 906 (915)
++... .+.......++|..++|.|.++.|++++. +-.+.++|++.+ +.+..-...=+.+.|+|.+++++.++
T Consensus 261 ~~~e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 261 RITER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred eeccc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEec
Confidence 88632 12222244789999999999998888773 458999999888 44555556667788889888888877
Q ss_pred cC---CcEEEcC
Q 002495 907 HD---KFVKLWK 915 (915)
Q Consensus 907 ~D---g~I~IWd 915 (915)
-| |.|-||+
T Consensus 335 F~nl~gni~i~~ 346 (561)
T COG5354 335 FDNLQGNIEIFD 346 (561)
T ss_pred CCccccceEEec
Confidence 65 5566664
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.3e-10 Score=115.22 Aligned_cols=238 Identities=17% Similarity=0.263 Sum_probs=155.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc----eEEEeccCC------------CCeEEEEEcCCCCe-EEEE
Q 002495 676 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGHS------------ASVMSLDFHPNKDD-LICS 738 (915)
Q Consensus 676 h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~----~~~~~~~h~------------~~V~sl~fsp~~~~-ll~s 738 (915)
..+-|.+|.|...|.+||+|+.+|.|.+|.-+.... ....+..|. ..|..|.|.++++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 346789999999999999999999999997654332 223343343 46888999887543 4446
Q ss_pred EeCCCcEEEEEcCCCee-----------------------------------EEEee----cCceEEEEecCCCEEEEEE
Q 002495 739 CDGDGEIRYWSINNGSC-----------------------------------TRVFK----GGTAQMRFQPHLGRYLAAA 779 (915)
Q Consensus 739 ~s~Dg~I~iwdl~~~~~-----------------------------------~~~~~----~~~~~v~~sp~~~~ll~~~ 779 (915)
...|.+|++|.+..... .+++. -++.++.+..+...+ ..+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~-lSA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF-LSA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE-eec
Confidence 77899999999864321 11111 133455566664444 455
Q ss_pred cCCeEEEEECCCceE---EEEecCC-----CCCeEEEEEcCCCC--EEEEEeCCeEEEEECCCCCC----cceE------
Q 002495 780 AENVVSILDAETQAC---RLSLQGH-----TKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGSE----GECV------ 839 (915)
Q Consensus 780 ~dg~I~i~D~~t~~~---~~~l~~h-----~~~V~si~~spdg~--~Las~s~d~I~iwdl~s~~~----~~~i------ 839 (915)
.|-+|.+|.++--.. +..++.+ ..-|++..|+|... ++++.+.++|++.|++.... .+.+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 677899998874322 2222222 24588999999543 44555555999999984311 0111
Q ss_pred ---EEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC-CCcEE-EEcccC------------CCe---EEEEEeCCC
Q 002495 840 ---HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS-ENKTM-TLTAHE------------GLI---AALAVSTET 899 (915)
Q Consensus 840 ---~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~-~~~~~-~~~~h~------------~~V---~~l~~spdg 899 (915)
..+..--..|..+.|+.+|+|+++-. .-+|+|||+. ..+.+ ++..|. +.| ..++|+-++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 11112234578889999999888643 3689999994 33333 444443 223 457899999
Q ss_pred CEEEEEecCCcEEEcC
Q 002495 900 GYVASASHDKFVKLWK 915 (915)
Q Consensus 900 ~~Lasgs~Dg~I~IWd 915 (915)
.+++||+....+++|+
T Consensus 342 ~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFN 357 (433)
T ss_pred ceEecccccceEEEec
Confidence 9999999999999885
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=130.49 Aligned_cols=278 Identities=16% Similarity=0.312 Sum_probs=193.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECC-CCceeeEecc-CCCcEEEEEECCCC--CEEEEEeCCCeEEEEECCCC-
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEE-HSSLITDVRFSPSM--PRLATSSFDKTVRVWDADNP- 709 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~-t~~~~~~l~~-h~~~V~~l~fspdg--~~Lasgs~Dg~I~iWdl~~~- 709 (915)
.+.+.++.++|.|+-+|.++.-| +.+.|++ .+...+-+.. ..-.|-++.|++.. .+-++......-.||++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 45788999999999999998776 4555665 3333333321 22357788888743 34444444555678988642
Q ss_pred -CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEE---eecCceEEEEecCCCEEEEEEcCCeE
Q 002495 710 -GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRV---FKGGTAQMRFQPHLGRYLAAAAENVV 784 (915)
Q Consensus 710 -~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~-~~~---~~~~~~~v~~sp~~~~ll~~~~dg~I 784 (915)
...-..+.+|...|+++.|++....++++|+.|-.|..||+++... +.. .......|.|+..+..+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 2344567799999999999999999999999999999999997642 222 34566789999999999999999999
Q ss_pred EEEECCCc-eEEEEecCCCCCeEEEEEcCCC-CEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEE
Q 002495 785 SILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 861 (915)
Q Consensus 785 ~i~D~~t~-~~~~~l~~h~~~V~si~~spdg-~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l 861 (915)
.|||.+.+ .++..+++|...|+.+.|..-- ..+.+++.| +|++||...... .-........+|..-.+.|-|.-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCcee
Confidence 99999987 6788899999999999987632 256666666 999999975422 111112224556666666644322
Q ss_pred EEE-----------EcCCeEEEEECCCCc-EE-EEcccCCCeEEEEEeCCC--------C--EEEEEecCCcEEEcC
Q 002495 862 LVI-----------GCYQSLELWNMSENK-TM-TLTAHEGLIAALAVSTET--------G--YVASASHDKFVKLWK 915 (915)
Q Consensus 862 ~s~-----------s~dg~I~iwd~~~~~-~~-~~~~h~~~V~~l~~spdg--------~--~Lasgs~Dg~I~IWd 915 (915)
++- -+++....|++.++. .+ ++.+|++.|....|-..+ + .|+|-+.|..+|+|.
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 221 222233334443332 23 889999999877664321 1 599999999999994
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.4e-08 Score=103.17 Aligned_cols=259 Identities=11% Similarity=0.109 Sum_probs=177.6
Q ss_pred CCcEEEEECCCCce-e--eEeccCCCcEEEEEECCCCCEEEEEeC---CCeEEEEECCCCCceEEEec---cCCCCeEEE
Q 002495 656 DKKAVLWHTDTLKS-K--TNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFM---GHSASVMSL 726 (915)
Q Consensus 656 Dg~V~vwd~~t~~~-~--~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~iWdl~~~~~~~~~~~---~h~~~V~sl 726 (915)
+.-|++|++++..- + ..+-.+...++-|+|+++.++|+++.. +|.|..|.++.....+..+. .....-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46799999883221 1 122356778899999999999998865 57888888885322222221 122333779
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEEE---e------------ecCceEEEEecCCCEEEEEEc-CCeEEEEEC
Q 002495 727 DFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F------------KGGTAQMRFQPHLGRYLAAAA-ENVVSILDA 789 (915)
Q Consensus 727 ~fsp~~~~ll~s~s~Dg~I~iwdl~~-~~~~~~---~------------~~~~~~v~~sp~~~~ll~~~~-dg~I~i~D~ 789 (915)
++++++..++++-...|.|.++-++. |..... + ..++....+.|++.+++++.- ..+|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887777789999999965 432221 1 113556789999988888776 578999999
Q ss_pred CCceEEEEec---CCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCC-CCcceEEEecc------CCCceEEEEEeCC
Q 002495 790 ETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSC------NGNKFHSCVFHPT 857 (915)
Q Consensus 790 ~t~~~~~~l~---~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~-~~~~~i~~~~~------~~~~i~~i~~spd 857 (915)
..++....-. .....-+.|.|+|++++.++.++= +|.+|..... .+.+.+..+.. ...+...|.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775433211 233456889999999988777654 8999999774 33333333322 2456778899999
Q ss_pred CCEEEEEEcC-CeEEEEECCC--CcEE---EEcccCCCeEEEEEeCCCCEEEEEecCC-cEEEc
Q 002495 858 YPSLLVIGCY-QSLELWNMSE--NKTM---TLTAHEGLIAALAVSTETGYVASASHDK-FVKLW 914 (915)
Q Consensus 858 g~~l~s~s~d-g~I~iwd~~~--~~~~---~~~~h~~~V~~l~~spdg~~Lasgs~Dg-~I~IW 914 (915)
|++|+++... +.|.+|.+.. +++. ....+.-.-+.+.|++++++|+++..|+ .|.+|
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 9999888654 4888887754 3332 2233445578999999999999888653 46665
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=127.64 Aligned_cols=194 Identities=13% Similarity=0.211 Sum_probs=150.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCc----EEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPSMPRLATSSFDKTVRVWDADNPG 710 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~----V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~ 710 (915)
.+.|....+..+.+.++.++.+..+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344555666777889999999999999999877666555433221 2223346666789999999999999998534
Q ss_pred ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-E---eecCceEEEEecCCCEEEEEEcCCeEEE
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-V---FKGGTAQMRFQPHLGRYLAAAAENVVSI 786 (915)
Q Consensus 711 ~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~-~---~~~~~~~v~~sp~~~~ll~~~~dg~I~i 786 (915)
... .+.+|.+.|.++.|+.+|. +++++++|.++|+|++++.+... . +...+..+++.+. ++++++.|.+.++
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 433 6889999999999999876 55699999999999999988765 2 2234566778777 9999999999999
Q ss_pred EECCCceEEEEecCCC-CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002495 787 LDAETQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG 833 (915)
Q Consensus 787 ~D~~t~~~~~~l~~h~-~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 833 (915)
|+...... ..+.+|. ..|..++..++...+++++.| .+++||+...
T Consensus 243 W~~~~~~l-~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNGTQL-EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eeccccee-hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 96654433 3666665 468999999988899999999 9999998654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-08 Score=113.72 Aligned_cols=253 Identities=15% Similarity=0.105 Sum_probs=160.4
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEE
Q 002495 646 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 725 (915)
Q Consensus 646 dg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~s 725 (915)
.+..|++++.+|.|..+|..+++.+..+.........+.. ++..+++++.++.|+.+|.++ ++.+...... ..+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~-~~~~~ 139 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAED-GKELWRAKLS-SEVLS 139 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCC-CcEeeeeccC-ceeec
Confidence 3568888989999999999999988776654432223332 467888999999999999987 5555443322 22222
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEE------ecCCCEEEEEEcCCeEEEEECCCceEEEEec
Q 002495 726 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF------QPHLGRYLAAAAENVVSILDAETQACRLSLQ 799 (915)
Q Consensus 726 l~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~------sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 799 (915)
.-.. .++.++ .++.++.|+.||.++++.+..++.....+.+ .-.++.++++..++.+..+|.++++.+....
T Consensus 140 ~p~v-~~~~v~-v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 140 PPLV-ANGLVV-VRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CCEE-ECCEEE-EECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 1111 134444 6677999999999999988776543211100 1123577788888999999999998776543
Q ss_pred CCCC----C------e-EEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC
Q 002495 800 GHTK----P------I-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 867 (915)
Q Consensus 800 ~h~~----~------V-~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~d 867 (915)
.... . + .+..+ .+..+++++.+ .++.||..+++ .+..... ..... ....+..+++++.+
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~---~~W~~~~--~~~~~--p~~~~~~vyv~~~~ 288 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGR---VLWKRDA--SSYQG--PAVDDNRLYVTDAD 288 (377)
T ss_pred cccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCc---EEEeecc--CCccC--ceEeCCEEEEECCC
Confidence 2100 0 1 11112 24456666656 99999998774 3333221 11111 22356778888999
Q ss_pred CeEEEEECCCCcEEE-EcccC-CCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 868 QSLELWNMSENKTMT-LTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 868 g~I~iwd~~~~~~~~-~~~h~-~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+.|+.+|..+++.+. ..... ..+....+ .+.+|++++.||.|++||
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 999999999998773 21211 12222222 356888899999998875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=121.87 Aligned_cols=201 Identities=15% Similarity=0.191 Sum_probs=145.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCceEEEecc---CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEEeecC
Q 002495 687 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGG 762 (915)
Q Consensus 687 pdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~---h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~-~~~~~~~~ 762 (915)
+...++|....||.+||||... +.....|.. -++..++..| .+.-+. +.+.. .-
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~p~~~~s~t~~~~~w--------------------~L~~~~s~~k~~-~~ 60 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFAPIASLSGTCTYTKW--------------------GLSADYSPMKWL-SL 60 (541)
T ss_pred chhheEeecCCCCeEEEEEccC-ceeeeeeccchhccCcceeEEE--------------------EEEeccchHHHH-hH
Confidence 3456889999999999999987 333322221 1223333333 311110 00000 00
Q ss_pred ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEec--CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceE
Q 002495 763 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 839 (915)
Q Consensus 763 ~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i 839 (915)
......+.+...++.|...|.|.+|++..++....+. +|.+.|+++.++.+-..|.+++.| .+.+|+.... ..+
T Consensus 61 ~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---~~~ 137 (541)
T KOG4547|consen 61 EKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---VII 137 (541)
T ss_pred HHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---eee
Confidence 0001112233456777889999999999998888776 599999999999988899999999 9999999765 677
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC-----CCEEEE-EecCCcEE
Q 002495 840 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE-----TGYVAS-ASHDKFVK 912 (915)
Q Consensus 840 ~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd-----g~~Las-gs~Dg~I~ 912 (915)
..+.+....+.+++++||+..+++++ +.|++||+++++++ .+.+|.++|+++.|..+ |.+|.+ +..+..|.
T Consensus 138 ~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~ 215 (541)
T KOG4547|consen 138 RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGIT 215 (541)
T ss_pred eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccccee
Confidence 77888888899999999999888876 68999999999988 89999999999999877 666555 44556677
Q ss_pred Ec
Q 002495 913 LW 914 (915)
Q Consensus 913 IW 914 (915)
+|
T Consensus 216 ~w 217 (541)
T KOG4547|consen 216 VW 217 (541)
T ss_pred EE
Confidence 76
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-08 Score=121.11 Aligned_cols=280 Identities=16% Similarity=0.232 Sum_probs=184.3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEE----ECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECC-
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLW----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD- 707 (915)
Q Consensus 633 ~H~~~V~~lafspdg~~Lasgs~Dg~V~vw----d~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~- 707 (915)
...+.|.++.|-++..-|+.+..+|.|.++ +..+. .+.....-...|.|++||||...|+..+.+++|.+.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 346789999999999999999999999999 44432 233333456789999999999999999999988876432
Q ss_pred -----------CCC--ceE--------EEecc------------------------CCCCeEEEEEcCCCCeEEEEEe--
Q 002495 708 -----------NPG--YSL--------RTFMG------------------------HSASVMSLDFHPNKDDLICSCD-- 740 (915)
Q Consensus 708 -----------~~~--~~~--------~~~~~------------------------h~~~V~sl~fsp~~~~ll~s~s-- 740 (915)
..+ +.+ ..|.| +.+.-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 000 000 00000 2334567899999887665543
Q ss_pred CC---CcEEEEEcCCCeeEEEee---cCceEEEEecCCCEEEEEEc---CCeEEEEECCC---ceEEEEecCCCCCeEEE
Q 002495 741 GD---GEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA---ENVVSILDAET---QACRLSLQGHTKPIDSV 808 (915)
Q Consensus 741 ~D---g~I~iwdl~~~~~~~~~~---~~~~~v~~sp~~~~ll~~~~---dg~I~i~D~~t---~~~~~~l~~h~~~V~si 808 (915)
.+ ..||||+-+ |....+.+ +-...++|.|.|+.+++.-. ...|.+|.-.. ++....+......|..+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 22 579999976 65544433 23457899999988887765 23555565332 22222222345679999
Q ss_pred EEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccC-CCceEEEEEeCCCC-EEEEEEcCCeEEEEEC----CCC----
Q 002495 809 CWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYP-SLLVIGCYQSLELWNM----SEN---- 878 (915)
Q Consensus 809 ~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~spdg~-~l~s~s~dg~I~iwd~----~~~---- 878 (915)
.|+.|+.+|+....+.|.+|...+-.- ....++... ...+..+.|+|... .|.+.+.++.+..+++ ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~vqLWt~~NYHW-YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDRVQLWTRSNYHW-YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCCceEEEeeCCEE-EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 999999999998888999999865421 122222221 23344588998654 3555555565544332 211
Q ss_pred ------------cEE----------------EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 879 ------------KTM----------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 879 ------------~~~----------------~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
..+ ........|.+++|++++..+++-..||.|.+|+
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 111 1112457899999999998899999999999874
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.9e-08 Score=105.49 Aligned_cols=281 Identities=15% Similarity=0.152 Sum_probs=184.1
Q ss_pred CCcccccccC-ccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC-CCceeeEeccCCC--cEEEEEECCC
Q 002495 613 GGRGMDVSQG-FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSS--LITDVRFSPS 688 (915)
Q Consensus 613 ~~~~~d~~~~-~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~-t~~~~~~l~~h~~--~V~~l~fspd 688 (915)
.++.|-...+ .+|+.+..+.+|-..-.-| .++..+....||.=.||.++ .++-+ +.|+. .-.+-..+.|
T Consensus 205 rGklWis~d~g~tFeK~vdl~~~vS~PmIV----~~RvYFlsD~eG~GnlYSvdldGkDl---rrHTnFtdYY~R~~nsD 277 (668)
T COG4946 205 RGKLWISSDGGKTFEKFVDLDGNVSSPMIV----GERVYFLSDHEGVGNLYSVDLDGKDL---RRHTNFTDYYPRNANSD 277 (668)
T ss_pred cceEEEEecCCcceeeeeecCCCcCCceEE----cceEEEEecccCccceEEeccCCchh---hhcCCchhccccccCCC
Confidence 3444544443 3777777777775432222 23344445566665666544 33322 22322 1122234568
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceEEEec-----cCC-----CCeEEEE-EcCCCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 002495 689 MPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHS-----ASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTR 757 (915)
Q Consensus 689 g~~Lasgs~Dg~I~iWdl~~~~~~~~~~~-----~h~-----~~V~sl~-fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~ 757 (915)
|++|+... .|.|.+||.++.......+. ... .+..-+. |++-...+++..+ .|...|.+...+-.+.
T Consensus 278 GkrIvFq~-~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQN-AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEec-CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE
Confidence 88877653 57799999887432211111 000 1111111 4444445665665 5788888777666555
Q ss_pred Ee-ecCceEEEEecCCCEEEEEEcCC-eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCC
Q 002495 758 VF-KGGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 834 (915)
Q Consensus 758 ~~-~~~~~~v~~sp~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~ 834 (915)
.- ++++.-..+..+...++.+..|| .+-|||.++++.... ...-+.|.++..+++|++++.+.+. .|.++|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 43 34556666777777888888888 899999999876543 4456789999999999999988888 99999998873
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002495 835 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 906 (915)
Q Consensus 835 ~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg----~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 906 (915)
....-+....-|+.+.|||++++|+.+--+| .|++||+.+++........+.=.+-+|.||+++|.--+
T Consensus 435 ---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 ---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 2222334467799999999999999987776 79999999999987776666667788999999876543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=111.38 Aligned_cols=237 Identities=17% Similarity=0.312 Sum_probs=161.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-----eeeEeccCC------------CcEEEEEECCCCC--EEEEE
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHS------------SLITDVRFSPSMP--RLATS 695 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~-----~~~~l~~h~------------~~V~~l~fspdg~--~Lasg 695 (915)
.+.|++|.|...|.||++|...|.|.+|.-+..+ ....|.+|. ..|..|.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5689999999999999999999999999765322 223344443 3588889987543 57777
Q ss_pred eCCCeEEEEECCCC------------------Cc-----------------------eEEEe-ccCCCCeEEEEEcCCCC
Q 002495 696 SFDKTVRVWDADNP------------------GY-----------------------SLRTF-MGHSASVMSLDFHPNKD 733 (915)
Q Consensus 696 s~Dg~I~iWdl~~~------------------~~-----------------------~~~~~-~~h~~~V~sl~fsp~~~ 733 (915)
+.|++|++|.+.+. +. +.+.+ ..|..-|.+|.|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 78999999988642 10 01112 35777889999998876
Q ss_pred eEEEEEeCCCcEEEEEcCCCee---EEEeec--------CceEEEEecCC-CEEEEEEcCCeEEEEECCCceEE------
Q 002495 734 DLICSCDGDGEIRYWSINNGSC---TRVFKG--------GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACR------ 795 (915)
Q Consensus 734 ~ll~s~s~Dg~I~iwdl~~~~~---~~~~~~--------~~~~v~~sp~~-~~ll~~~~dg~I~i~D~~t~~~~------ 795 (915)
.+| + ..|-.|.+|+++-..- +..++. -+++..|+|.. ..+...++.|.|++.|++.....
T Consensus 186 t~l-S-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLL-S-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eee-e-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 665 4 4588999999875321 111111 23556788865 45667778999999999843111
Q ss_pred E----------EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCC------------Cc---eE
Q 002495 796 L----------SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG------------NK---FH 850 (915)
Q Consensus 796 ~----------~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~------------~~---i~ 850 (915)
. -+.+-...|..+.|+++|+||++-+.-+|+|||++..+ .++.++..|. .. -.
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeE
Confidence 1 11122356788999999999998887799999998654 4555543321 11 23
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEEC
Q 002495 851 SCVFHPTYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 851 ~i~~spdg~~l~s~s~dg~I~iwd~ 875 (915)
.|.|+.|.+.+++|+..+..-||-.
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEecCCcccccccccccceeeecc
Confidence 4678888888888888776666653
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.1e-08 Score=122.56 Aligned_cols=239 Identities=13% Similarity=0.151 Sum_probs=160.4
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEECCCCceeeEecc--C------------CCcEEEEEECCCCCEEEEEeC-CCeEE
Q 002495 639 ICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEE--H------------SSLITDVRFSPSMPRLATSSF-DKTVR 702 (915)
Q Consensus 639 ~~lafspd-g~~Lasgs~Dg~V~vwd~~t~~~~~~l~~--h------------~~~V~~l~fspdg~~Lasgs~-Dg~I~ 702 (915)
..++++++ +.++++-+.++.|++||... ..+..+.+ . -.....|+|.+++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 55666667788999999764 43433322 1 123578999998887766654 57899
Q ss_pred EEECCCCCceEEEeccC-----------------CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----
Q 002495 703 VWDADNPGYSLRTFMGH-----------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 760 (915)
Q Consensus 703 iWdl~~~~~~~~~~~~h-----------------~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~----- 760 (915)
++|+.+ + .+.++.+- -..-++|+|+|+++.++++...++.|++||..++.......
T Consensus 650 ~id~~~-~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVN-E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCC-C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999876 2 34433221 11346799999777788788889999999998775432110
Q ss_pred ------------cCceEEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEecC-------------C--------CCCeE
Q 002495 761 ------------GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-------------H--------TKPID 806 (915)
Q Consensus 761 ------------~~~~~v~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~-------------h--------~~~V~ 806 (915)
.....++++++++.++++.. ++.|++||+.++.......+ + -..-.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12245889999986666555 68999999987653221100 0 01235
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE----------eccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002495 807 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE----------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 807 si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~----------~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~ 875 (915)
+++|+++|.++++...+ .|++||..++........ ....-.....++++++|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 88999999987777777 999999976522111100 0111235678999999998888888899999999
Q ss_pred CCCcE
Q 002495 876 SENKT 880 (915)
Q Consensus 876 ~~~~~ 880 (915)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88765
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-08 Score=123.46 Aligned_cols=232 Identities=11% Similarity=0.102 Sum_probs=155.1
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEECCCCCceEEEecc--C------------CCCeEEEEEcCCCCeEEEEEeCCCcE
Q 002495 681 TDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMG--H------------SASVMSLDFHPNKDDLICSCDGDGEI 745 (915)
Q Consensus 681 ~~l~fspd-g~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~--h------------~~~V~sl~fsp~~~~ll~s~s~Dg~I 745 (915)
..++++++ ++++++-+.++.|++||... ..+..+.+ . -.....|++.++++.++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788875 55666666788999999864 33333322 1 12357899998877666565566889
Q ss_pred EEEEcCCCeeEEEee-------------------cCceEEEEecCCCEEEEE-EcCCeEEEEECCCceEEEEecCC----
Q 002495 746 RYWSINNGSCTRVFK-------------------GGTAQMRFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGH---- 801 (915)
Q Consensus 746 ~iwdl~~~~~~~~~~-------------------~~~~~v~~sp~~~~ll~~-~~dg~I~i~D~~t~~~~~~l~~h---- 801 (915)
+++|+.++....... .....++++++++.++++ ..++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 999998765432211 122458899966665555 457899999998875432 1111
Q ss_pred -----------CCCeEEEEEcCCCCEEEEEe-CC-eEEEEECCCCCCcceE----------EEecc--------CCCceE
Q 002495 802 -----------TKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECV----------HELSC--------NGNKFH 850 (915)
Q Consensus 802 -----------~~~V~si~~spdg~~Las~s-~d-~I~iwdl~s~~~~~~i----------~~~~~--------~~~~i~ 850 (915)
-.....|+|+|++..|+++. .+ .|++||+.++...... ..+.. ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12345699999998555544 44 9999999865321100 00000 011245
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEccc--------------CCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 851 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH--------------EGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 851 ~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h--------------~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.++++++|..+++-..++.|++||..++.+..+.+. ......|+++++|+++++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 789999999888888889999999998877654432 23578899999999988888999999996
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.4e-08 Score=107.81 Aligned_cols=269 Identities=14% Similarity=0.199 Sum_probs=183.1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeC-----------CCeEEEEEC
Q 002495 638 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-----------DKTVRVWDA 706 (915)
Q Consensus 638 V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----------Dg~I~iWdl 706 (915)
-+-+.|||.|.||+|-..- -|.+|--++...+..|. |. .|.-+.|||+.+||+|-+. ...|+|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 4568999999999998755 48899877766666664 43 3889999999999998753 257999999
Q ss_pred CCCCceEEEeccC--CCCe-EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--ee-cCceEEEEecCCCEEEEEEc
Q 002495 707 DNPGYSLRTFMGH--SASV-MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FK-GGTAQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 707 ~~~~~~~~~~~~h--~~~V-~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~--~~-~~~~~v~~sp~~~~ll~~~~ 780 (915)
.+ +...+.|... ...+ .-+.|+.|++++... ....|.||+..+..++.. ++ .++....|+|.+..|+.-..
T Consensus 290 ~t-G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm--~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 290 AT-GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM--TGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred cc-cchhcceeccCCCccccceEEeccCCceeEEe--ccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 98 6666666542 2222 236799887654432 347899998876444322 22 35677889999777766544
Q ss_pred C-----CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-----------eEEEEECCCCCCcceEEEecc
Q 002495 781 E-----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-----------SVRVWTVGSGSEGECVHELSC 844 (915)
Q Consensus 781 d-----g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-----------~I~iwdl~s~~~~~~i~~~~~ 844 (915)
+ .++.+..+.++..+++..-|.-.=..+.|-.+|++|+.--+. .+.|+.++..........+
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel-- 444 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL-- 444 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec--
Confidence 2 477888888887777665554444557788888888754321 4667777654332222222
Q ss_pred CCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCC-CcEEEEc--ccCCCeEEEEEeCCCCEEEEEe---cCCcEEEcC
Q 002495 845 NGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSE-NKTMTLT--AHEGLIAALAVSTETGYVASAS---HDKFVKLWK 915 (915)
Q Consensus 845 ~~~~i~~i~~spdg~~l~s~s~d---g~I~iwd~~~-~~~~~~~--~h~~~V~~l~~spdg~~Lasgs---~Dg~I~IWd 915 (915)
...|...+|.|.|..+++.+.. .+|.+|.+.. .....+. -.....+.+.|+|.|++++.+. ..|.+.++|
T Consensus 445 -ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 -KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred -chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 4578889999999998888765 3899998873 3222111 1225677899999999988764 456666654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.6e-10 Score=134.95 Aligned_cols=208 Identities=17% Similarity=0.284 Sum_probs=164.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec----Cce
Q 002495 689 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTA 764 (915)
Q Consensus 689 g~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~----~~~ 764 (915)
+..+..+..++.+.-|..+..+ ..++.+-..|.++.-+|....+| +|+.||.|++|....+..+..+.. .+.
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 3445555556666667665422 22334556788888899877666 999999999999998887776653 456
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC---C-eEEEEECCCCCCcceEE
Q 002495 765 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVH 840 (915)
Q Consensus 765 ~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~---d-~I~iwdl~s~~~~~~i~ 840 (915)
.+.|+..|+.+-++..||.+.+|.+. .++......|....+.+.|.. ..+++.+. + .+.+||..-.....+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 67899999999999999999999987 677778888999999999985 55666543 3 89999987666556666
Q ss_pred EeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 841 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 841 ~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.+|...++++++.|....|++||.+|.|++||++..+.+ .+.. ++ ...+|++|+..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 789999999999999999999999999999999988766 3332 34 556899999999999996
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-07 Score=101.10 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=115.7
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCC-cEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 002495 632 RASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 710 (915)
Q Consensus 632 ~~H~~~V~~lafspdg~~Lasgs~Dg-~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~ 710 (915)
-+|...|.-..+.-+++-++.|..|| .|-|||.++++ ++.+...-+.|.++..+++|++++++.....|.++|+++ +
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-g 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-G 433 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-C
Confidence 36788899999999999999999999 89999998876 455566678899999999999999999999999999998 5
Q ss_pred ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCC----CcEEEEEcCCCeeEEEeec--CceEEEEecCCCEEEEEEc
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 711 ~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~D----g~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~ 780 (915)
.....-+...+-|+.++|+|+++.+. -+--+ ..|++||+..++....... ...+-+|.|++.+++.-+.
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iA-YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIA-YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEE-EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 44444445667899999999976544 44334 4689999999887665443 3455678999887766544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.4e-07 Score=104.93 Aligned_cols=224 Identities=12% Similarity=0.106 Sum_probs=144.6
Q ss_pred CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCE-EEEEeCC---CeEEEEECCCCCceEEEeccCCCCeEEEEEcCCC
Q 002495 657 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 732 (915)
Q Consensus 657 g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~D---g~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~ 732 (915)
..|.+-|.+... .+.+.... .+...+|+|||+. ++..+.+ ..|+++|+.+ +.. +.+....+.+...+|+||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~-~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKK-EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcE-EEEecCCCcEEeeEECCCC
Confidence 345555554333 33333333 7888999999985 6654443 4688899976 433 3333355666778899999
Q ss_pred CeEEEEEeCC--CcEEEEEcCCCeeEEEeecC--ceEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEecCCCCCe
Q 002495 733 DDLICSCDGD--GEIRYWSINNGSCTRVFKGG--TAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPI 805 (915)
Q Consensus 733 ~~ll~s~s~D--g~I~iwdl~~~~~~~~~~~~--~~~v~~sp~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V 805 (915)
+.++++.+.+ ..|+++|+.+++........ .....|+|++..++..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888776655 46888898887755443322 3456899999988887753 2 788889988876433321 111
Q ss_pred EEEEEcCCCCEEEEEeCC----------eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 002495 806 DSVCWDPSGELLASVSED----------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLEL 872 (915)
Q Consensus 806 ~si~~spdg~~Las~s~d----------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg---~I~i 872 (915)
...|+|||++|+..+.. .|.+.|+.++.. ..+... .......|+|||+.|+....++ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 24899999987766532 577778876632 222222 2233578999999888877553 5778
Q ss_pred EECCCCcEEEEcccCCCeEE
Q 002495 873 WNMSENKTMTLTAHEGLIAA 892 (915)
Q Consensus 873 wd~~~~~~~~~~~h~~~V~~ 892 (915)
+++.......+....+.|..
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQS 416 (419)
T ss_pred EecCCCeeEEeecCCCccCC
Confidence 88877766666554444443
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-10 Score=128.82 Aligned_cols=262 Identities=16% Similarity=0.190 Sum_probs=181.6
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCC--eE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TV 701 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~I 701 (915)
.|+..++|+.|+...+|++|+-+.++|++|+..|.|++|++.+|........|..+|+-|.-+.||..+++.+.-. -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 5778889999999999999999999999999999999999999999999999999999999999999887776533 47
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-c------CceEEEEecCCCE
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-G------GTAQMRFQPHLGR 774 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~-~------~~~~v~~sp~~~~ 774 (915)
.+|++.+.+.....|.+ ..++.|+.....-+ .|.......+||+.++..+.++- + ...+..|+|.+..
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 89999875555555543 45677875433223 34444678899999987665532 2 2356779998777
Q ss_pred EEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002495 775 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 854 (915)
Q Consensus 775 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 854 (915)
++- || .+||++..+.++.|......+ .-.|+|.|.-++.-+ .|||+++.+....+..+ .-..+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF~lLh~VP~L-----dqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTFKLLHSVPSL-----DQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHHHHHhcCccc-----cceEEEe
Confidence 663 33 579999988888776555333 346999999887765 48999886432222222 2234567
Q ss_pred eCCCCEEEEEEc--C---------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002495 855 HPTYPSLLVIGC--Y---------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 905 (915)
Q Consensus 855 spdg~~l~s~s~--d---------------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 905 (915)
...|..++..-. | ...+-||...-..+........|..+|-.+...+++.-
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 666665444320 0 12333444443444334445566666666666666543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=130.83 Aligned_cols=189 Identities=14% Similarity=0.288 Sum_probs=157.0
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEecc-CCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 630 ~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~ 708 (915)
.++.|-..|.|+.-+|...+.+||+.||.|++|....+..+..++. -...|+.+.|+..|+.+..+..||.+.+|.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 3456677899999999999999999999999999998888877762 33889999999999999999999999999997
Q ss_pred CCceEEEeccCCCCeEEEEEcCCCCeEEEEEe---CCCcEEEEEcCCC---eeEEE-eecCceEEEEecCCCEEEEEEcC
Q 002495 709 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNG---SCTRV-FKGGTAQMRFQPHLGRYLAAAAE 781 (915)
Q Consensus 709 ~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s---~Dg~I~iwdl~~~---~~~~~-~~~~~~~v~~sp~~~~ll~~~~d 781 (915)
.++......|.....+++|.. .++++++ .++.+.+||..-. .++.+ +.++.+++.+.|....+++|+.+
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred -CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 467788889999999999985 3555654 4789999997532 33443 34678899999999999999999
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 833 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 833 (915)
|.|++||++..+.++++.. ++ ...+|++++.. .|+||++...
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 9999999999888877764 44 56788888877 9999999765
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-07 Score=107.85 Aligned_cols=212 Identities=15% Similarity=0.153 Sum_probs=153.9
Q ss_pred ccccCccceeeeEeecCCCCeEEEEEcCCC------------CEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEE
Q 002495 618 DVSQGFSFKEANSVRASTSKVICCHFSSDG------------KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 685 (915)
Q Consensus 618 d~~~~~~~~~~~~l~~H~~~V~~lafspdg------------~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~f 685 (915)
.+.+..+++.+.+++-|...|+.|.|.|-. -+||++...|.|.|||+..+..+..+..|.++|.+++|
T Consensus 38 ~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W 117 (1062)
T KOG1912|consen 38 SVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCW 117 (1062)
T ss_pred EEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheee
Confidence 344455788899999999999999998721 26788888999999999999999999999999999999
Q ss_pred CC---CC-CEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------e
Q 002495 686 SP---SM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------S 754 (915)
Q Consensus 686 sp---dg-~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~-------~ 754 (915)
-+ +. ..|++-....+|.+|+.++ +..+..+........|+.+.|-...-++.-+..|.|.+-+.-.. +
T Consensus 118 ~~~rd~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk 196 (1062)
T KOG1912|consen 118 VPARDDSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK 196 (1062)
T ss_pred eeccCcchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence 76 33 3566666688999999998 55565555555667779998866655556666777777664321 1
Q ss_pred eEEEeec----------------------------CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeE
Q 002495 755 CTRVFKG----------------------------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPID 806 (915)
Q Consensus 755 ~~~~~~~----------------------------~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~ 806 (915)
....-.. -...++|+|.-..++.......+.|+|++-..++....-..+.+.
T Consensus 197 ~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~ak 276 (1062)
T KOG1912|consen 197 EFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAK 276 (1062)
T ss_pred eEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcc
Confidence 1111000 001246788888888888899999999998888777766666666
Q ss_pred EEEEcCCCC--EEEEEeCC-eEEEEEC
Q 002495 807 SVCWDPSGE--LLASVSED-SVRVWTV 830 (915)
Q Consensus 807 si~~spdg~--~Las~s~d-~I~iwdl 830 (915)
-+.|.|+++ .|++...+ .+.||-.
T Consensus 277 fv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 277 FVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred eeEeccCCCcceEEEEecCCeEEEEEe
Confidence 667777654 67777666 6666643
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-07 Score=107.25 Aligned_cols=190 Identities=11% Similarity=0.089 Sum_probs=130.3
Q ss_pred CeEEEEEcCCCCE-EEEEECC---CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEe-C--CCeEEEEECCCC
Q 002495 637 KVICCHFSSDGKL-LATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-F--DKTVRVWDADNP 709 (915)
Q Consensus 637 ~V~~lafspdg~~-Lasgs~D---g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~--Dg~I~iWdl~~~ 709 (915)
.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+.+..|+|||+.|+... . +..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~- 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT- 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-
Confidence 7788999999984 6655544 468999998876555443 556677789999998776543 3 34688888875
Q ss_pred CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCC--cEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcC------
Q 002495 710 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE------ 781 (915)
Q Consensus 710 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg--~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~d------ 781 (915)
+. .+.+..+........|+|||+.++++....+ .|+++|+.+++..+....+.....|+|+++.++.....
T Consensus 267 g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 267 KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccC
Confidence 33 4444444443455789999998887776555 58888888887755443332346899999998887753
Q ss_pred ---CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECC
Q 002495 782 ---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG 831 (915)
Q Consensus 782 ---g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~ 831 (915)
..|.++|+.++.... +... .......|+|||+.|+..... .+.++++.
T Consensus 346 ~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 378888998886533 3322 233458899999977665543 35566653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.4e-08 Score=110.15 Aligned_cols=237 Identities=16% Similarity=0.214 Sum_probs=167.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCC------------CEEEEEeCCCeEE
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM------------PRLATSSFDKTVR 702 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg------------~~Lasgs~Dg~I~ 702 (915)
...-.++.|++.| +||.|+. ..|.|.|..+.+.+..++.|...|+.|+|.|.. -+||++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3346788899988 7777764 589999999999999999999999999998721 2567777899999
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEcC---CCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC---ceEEEEecCCC-EE
Q 002495 703 VWDADNPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLG-RY 775 (915)
Q Consensus 703 iWdl~~~~~~~~~~~~h~~~V~sl~fsp---~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~---~~~v~~sp~~~-~l 775 (915)
+||+.. ...+..+..|.++|..++|.+ +.++++++-....+|.+|+..+|+....+... ..++.+.|.+. ++
T Consensus 93 l~d~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 93 LVDFVL-ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEehh-hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence 999997 666777888899999999976 34466777777899999999999988877543 24577777664 45
Q ss_pred EEEEcCCeEEEEECCC-------ceEEEEecCCCC------------C-------------eEEEEEcCCCC-EEEEEeC
Q 002495 776 LAAAAENVVSILDAET-------QACRLSLQGHTK------------P-------------IDSVCWDPSGE-LLASVSE 822 (915)
Q Consensus 776 l~~~~dg~I~i~D~~t-------~~~~~~l~~h~~------------~-------------V~si~~spdg~-~Las~s~ 822 (915)
.+.+..|.|.+.+.-. ++....-..|.+ . ...++|+|.-+ +++..-.
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 5556677777665431 222222222222 0 11246677655 3444444
Q ss_pred CeEEEEECCCCCCcceEEEeccCCCceEEEEEeCC--CCEEEEEEcCCeEEEEECCC
Q 002495 823 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT--YPSLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 823 d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spd--g~~l~s~s~dg~I~iwd~~~ 877 (915)
..+.|+|++-. .++.......+.+.-+.+-|+ ...|++...||.+.||--+.
T Consensus 252 rellv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 252 RELLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cceEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 48999999644 555555554554444555554 56799999999999997654
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-09 Score=118.63 Aligned_cols=217 Identities=20% Similarity=0.281 Sum_probs=153.6
Q ss_pred ccccccCccceeeeEeecCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCC-ceeeEeccCCCcEEEEEECCCCCEEE
Q 002495 616 GMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLA 693 (915)
Q Consensus 616 ~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg-~~Lasgs~Dg~V~vwd~~t~-~~~~~l~~h~~~V~~l~fspdg~~La 693 (915)
+|.+.+...-.....+.+|+..|+.+.|.+.. .+||+++.|-.|..||+.+. ..+..+..-.....-|+|+.....+.
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence 34444443444556788999999999999854 69999999999999999854 44555555556678899998666666
Q ss_pred EEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----ecCceEEEEe
Q 002495 694 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQ 769 (915)
Q Consensus 694 sgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~s 769 (915)
+.+..+.|+|||++.++.++..+++|...|+.++|.......+.+++.|++|++||.......... +..+..-++.
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 677788899999999889999999999999999998765556779999999999998765322211 1223333444
Q ss_pred cCCCEEEEE-----------EcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcC--------CC--CEEEEEeCC-eEE
Q 002495 770 PHLGRYLAA-----------AAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP--------SG--ELLASVSED-SVR 826 (915)
Q Consensus 770 p~~~~ll~~-----------~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~sp--------dg--~~Las~s~d-~I~ 826 (915)
|-+.-+++- -.++....|+..++ .++++|.+|.+.|....|-. |. -.|++=+.| .++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 444322221 11222333444433 78999999999887655533 22 268888999 999
Q ss_pred EEECCC
Q 002495 827 VWTVGS 832 (915)
Q Consensus 827 iwdl~s 832 (915)
+|-+.+
T Consensus 335 lWpI~~ 340 (1081)
T KOG0309|consen 335 LWPIDS 340 (1081)
T ss_pred eeeccH
Confidence 998754
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.4e-10 Score=119.82 Aligned_cols=205 Identities=17% Similarity=0.212 Sum_probs=134.3
Q ss_pred eeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC------ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCC
Q 002495 670 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 743 (915)
Q Consensus 670 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~------~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg 743 (915)
+..+.+|...|..++-..+.+.+++++.|++|++|.++..+ .+..++..|+.+|.++.|..+.+ .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 45577999999999888888899999999999999997543 25567889999999999998744 44354 89
Q ss_pred cEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEE-eC
Q 002495 744 EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SE 822 (915)
Q Consensus 744 ~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~-s~ 822 (915)
.|.+||.-.++.+.... +.| + .+..+.|.|+.- -+..+++.+ +.
T Consensus 805 giHlWDPFigr~Laq~~-------dap-------------------k--------~~a~~~ikcl~n-v~~~iliAgcsa 849 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQME-------DAP-------------------K--------EGAGGNIKCLEN-VDRHILIAGCSA 849 (1034)
T ss_pred cceeecccccchhHhhh-------cCc-------------------c--------cCCCceeEeccc-Ccchheeeeccc
Confidence 99999976665443221 111 1 011122333211 123344444 44
Q ss_pred C-eEEEEECCCCCCcceEEEe--ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCC
Q 002495 823 D-SVRVWTVGSGSEGECVHEL--SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE 898 (915)
Q Consensus 823 d-~I~iwdl~s~~~~~~i~~~--~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd 898 (915)
. +|+++|.+..+-...++.. .+....+.++++.+.|++++++-.+|+|.+.|.++|+++ .+...+.....++- |.
T Consensus 850 eSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-ps 928 (1034)
T KOG4190|consen 850 ESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PS 928 (1034)
T ss_pred hhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-ch
Confidence 5 8999999887543333333 233456889999999999999999999999999999977 33333222222221 33
Q ss_pred CCEEEEEecCCcEEE
Q 002495 899 TGYVASASHDKFVKL 913 (915)
Q Consensus 899 g~~Lasgs~Dg~I~I 913 (915)
...|+....|.++.|
T Consensus 929 dq~L~~saldHslaV 943 (1034)
T KOG4190|consen 929 DQALAQSALDHSLAV 943 (1034)
T ss_pred hHHHHhhcccceeEe
Confidence 334444444444444
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-06 Score=92.86 Aligned_cols=214 Identities=14% Similarity=0.052 Sum_probs=138.0
Q ss_pred CCCcEEEEECCCCceeeEeccC--CCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCC
Q 002495 655 HDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 732 (915)
Q Consensus 655 ~Dg~V~vwd~~t~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~ 732 (915)
.+|.|..||..+++.+.....- .....+. ...++.+|++++.++.|+.||..+ ++.+..+.. ...+...... .+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~-~~~~~~~~~~-~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL-PGPISGAPVV-DG 76 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC-SSCGGSGEEE-ET
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec-cccccceeee-cc
Confidence 3689999999999988887541 1222211 223566888889999999999988 565555543 2221111122 23
Q ss_pred CeEEEEEeCCCcEEEEEcCCCeeEEEe-ecC------ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCC-
Q 002495 733 DDLICSCDGDGEIRYWSINNGSCTRVF-KGG------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP- 804 (915)
Q Consensus 733 ~~ll~s~s~Dg~I~iwdl~~~~~~~~~-~~~------~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~- 804 (915)
+.++ .+..++.|+.+|.++++.+..+ ... .........++.++++..++.|..+|.++++.+.........
T Consensus 77 ~~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 77 GRVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TEEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 4444 5557889999999999998874 322 122333444788999999999999999999998887664422
Q ss_pred ---------eEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002495 805 ---------IDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 873 (915)
Q Consensus 805 ---------V~si~~spdg~~Las~s~d-~-I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iw 873 (915)
+.+-.+..++ .++.+..+ . +.+ |+.+++ .+.... ...+.. .....+..|++++.++.|.+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~---~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGE---KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTE---EEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCC---EEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 1222233345 55555555 4 555 998874 222222 122222 245677888888899999999
Q ss_pred ECCCCcEE
Q 002495 874 NMSENKTM 881 (915)
Q Consensus 874 d~~~~~~~ 881 (915)
|+++++.+
T Consensus 228 d~~tG~~~ 235 (238)
T PF13360_consen 228 DLKTGKVV 235 (238)
T ss_dssp ETTTTEEE
T ss_pred ECCCCCEE
Confidence 99999876
|
... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-06 Score=109.16 Aligned_cols=274 Identities=12% Similarity=0.172 Sum_probs=173.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCC----cEEEEECCCC---ceeeEec-----cCCCcEEEEEECCCCCEEEEEeCCCeEEE
Q 002495 636 SKVICCHFSSDGKLLATGGHDK----KAVLWHTDTL---KSKTNLE-----EHSSLITDVRFSPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 636 ~~V~~lafspdg~~Lasgs~Dg----~V~vwd~~t~---~~~~~l~-----~h~~~V~~l~fspdg~~Lasgs~Dg~I~i 703 (915)
..+...+|......++++.... .|.+...... +.+..+. ...+.|.++.|.++...|+.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 3566677776554443333222 2333332222 1233332 34578999999999999999999999999
Q ss_pred E----ECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC---------------CCeeE--------
Q 002495 704 W----DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN---------------NGSCT-------- 756 (915)
Q Consensus 704 W----dl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~---------------~~~~~-------- 756 (915)
+ +..+ ..+.....-...|.+++|+||+..++ ....+++|.+.+.. ..+.+
T Consensus 102 ~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~Ella-~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 102 VREDPDPDE--DEIEIVGSVDSGILAASWSPDEELLA-LVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEccCCCCC--ceeEEEEEEcCcEEEEEECCCcCEEE-EEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence 9 5443 33444445668899999999977554 55557777664321 00000
Q ss_pred EE---------------------------eecCceEEEEecCCCEEEEEEc---C---CeEEEEECCCceEEEEecCCCC
Q 002495 757 RV---------------------------FKGGTAQMRFQPHLGRYLAAAA---E---NVVSILDAETQACRLSLQGHTK 803 (915)
Q Consensus 757 ~~---------------------------~~~~~~~v~~sp~~~~ll~~~~---d---g~I~i~D~~t~~~~~~l~~h~~ 803 (915)
.. .......++|-.||.++++.+. . ..|+||+-+ |....+-+.-.+
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g 257 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG 257 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC
Confidence 00 1113345778889888888765 2 478999876 554444443333
Q ss_pred CeEEEEEcCCCCEEEEEeC---C-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002495 804 PIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 879 (915)
Q Consensus 804 ~V~si~~spdg~~Las~s~---d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~ 879 (915)
--.+++|-|.|++||+... . .|.+|.-+.-+.......+......|..+.|++|+..|++...|. |.+|-..+-.
T Consensus 258 Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 258 LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 4457899999999998875 2 677787544333333333334567899999999999999977555 9999988866
Q ss_pred EE---EEc-ccCCCeEEEEEeCCCC-EEEEEecCCcEEEc
Q 002495 880 TM---TLT-AHEGLIAALAVSTETG-YVASASHDKFVKLW 914 (915)
Q Consensus 880 ~~---~~~-~h~~~V~~l~~spdg~-~Lasgs~Dg~I~IW 914 (915)
.. .+. .....+..+.|+|... .|...+.+|.+.++
T Consensus 337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 43 222 2334455699998654 46666665665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-07 Score=105.23 Aligned_cols=231 Identities=14% Similarity=0.226 Sum_probs=159.6
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEe--ccCCCcEEEEEECCCCCEEEEEeCCCeE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTV 701 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~I 701 (915)
++..-.++++|...|.-+.|+.....|-|...+|.|.||-+-++.-.... ......|.+++|+.||..|+..-.||.|
T Consensus 60 nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 60 NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAV 139 (1189)
T ss_pred ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCE
Confidence 44556789999999999999999999999999999999988765433322 2356679999999999999999999999
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-------eeEEE-------eecCceEEE
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------SCTRV-------FKGGTAQMR 767 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~-------~~~~~-------~~~~~~~v~ 767 (915)
.|=.++.....-+.+++ .-...+.|++|.+.++ .+-..|.+.+||.... .|... +...+..++
T Consensus 140 IVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~L-f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 140 IVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQAL-FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIE 216 (1189)
T ss_pred EEEeeccceecchhcch--heccceeecccHHHHH-hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccccee
Confidence 88887742211122222 1233588999876555 6667899999997532 12111 111223333
Q ss_pred E--------ecCCCEEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----------eEEEE
Q 002495 768 F--------QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED----------SVRVW 828 (915)
Q Consensus 768 ~--------sp~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~spdg~~Las~s~d----------~I~iw 828 (915)
| -|+...++++...|.+.|...++. .++..-. .-.|..+.|+++|.+|++++.+ .|.+|
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence 3 356788999999999988865544 3333222 2568889999999999998865 13333
Q ss_pred ECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEE
Q 002495 829 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 863 (915)
Q Consensus 829 dl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s 863 (915)
.. -...+..++..+..|+.++|-..|-.++.
T Consensus 295 sp----~G~i~gtlkvpg~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 295 SP----YGHIVGTLKVPGSCITGLSWEGTGLRIAI 325 (1189)
T ss_pred cc----chhheEEEecCCceeeeeEEcCCceEEEE
Confidence 32 23556677777888888888776654443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.5e-07 Score=91.96 Aligned_cols=221 Identities=8% Similarity=-0.011 Sum_probs=150.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee---cCce
Q 002495 688 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTA 764 (915)
Q Consensus 688 dg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~---~~~~ 764 (915)
...+||.|+..|...+|...+....+.....|...|+-+.-.-+...-+..++.|.++++.+++-+....... -...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 3458999999999999999875555555554544443222111222233467888999988887654433322 2367
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCc-e-EEE-EecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcc--e
Q 002495 765 QMRFQPHLGRYLAAAAENVVSILDAETQ-A-CRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE--C 838 (915)
Q Consensus 765 ~v~~sp~~~~ll~~~~dg~I~i~D~~t~-~-~~~-~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~--~ 838 (915)
.+.+++++...++.+....|..|.+... + .+. ......+.-.+..|+.....+|++..| ++.|||++...... .
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 7889999999999999999999987654 2 222 223344556788999999999999999 99999998764322 1
Q ss_pred EEEeccCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECCCCcEE--------EEcccCC-CeEEEEEeCCCCEEEEEec
Q 002495 839 VHELSCNGNKFHSCVFHPTYP--SLLVIGCYQSLELWNMSENKTM--------TLTAHEG-LIAALAVSTETGYVASASH 907 (915)
Q Consensus 839 i~~~~~~~~~i~~i~~spdg~--~l~s~s~dg~I~iwd~~~~~~~--------~~~~h~~-~V~~l~~spdg~~Lasgs~ 907 (915)
-..-..|.+.+..|.|++.|. .|+..-.-+.+.|.|+++.+-. .+..|.. .|..-+|+.++.-+.+.++
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 223345788899999998764 4555555578999999988644 1222333 3888888887776665554
Q ss_pred C
Q 002495 908 D 908 (915)
Q Consensus 908 D 908 (915)
+
T Consensus 323 ~ 323 (344)
T KOG4532|consen 323 L 323 (344)
T ss_pred h
Confidence 3
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-06 Score=100.35 Aligned_cols=252 Identities=11% Similarity=0.029 Sum_probs=155.5
Q ss_pred CCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCe---
Q 002495 647 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--- 723 (915)
Q Consensus 647 g~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V--- 723 (915)
+..++.++.+|.|+.+|.++++.+............... .+..+++++.++.|..+|.++ ++.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESD-GAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccC-CCEeeeecCCCCccccc
Confidence 456777888999999999999988877654322211122 244677788899999999998 55554443221100
Q ss_pred --EEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCc----e------EEEEec--CCCEEEEEEcCCeEEEEEC
Q 002495 724 --MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMRFQP--HLGRYLAAAAENVVSILDA 789 (915)
Q Consensus 724 --~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~----~------~v~~sp--~~~~ll~~~~dg~I~i~D~ 789 (915)
.+-... ++. ++.++.+|.|..+|..+++.+..+.... . .+...| .++.+++++.++.++.+|.
T Consensus 197 ~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 011111 233 4467778999999999998766543210 0 011111 3578888888999999999
Q ss_pred CCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-CCceEEEEEeCCCCEEEEEEcC
Q 002495 790 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY 867 (915)
Q Consensus 790 ~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~spdg~~l~s~s~d 867 (915)
.+++.+.+.... ....+.. .+..|+.++.+ .|..+|..+++. +...... .....+..+ .+.+|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~---~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVE---LWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcE---EEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999877655321 1112222 34555555655 999999987742 2221111 111222222 25678899999
Q ss_pred CeEEEEECCCCcEE-EEcccCCCeEE-EEEeCCCCEEEEEecCCcEEEcC
Q 002495 868 QSLELWNMSENKTM-TLTAHEGLIAA-LAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 868 g~I~iwd~~~~~~~-~~~~h~~~V~~-l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
|.|+++|..+++.+ ........+.+ ..+ .+..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 99999999999987 33323233332 223 244788889999998764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.85 E-value=8e-06 Score=87.12 Aligned_cols=214 Identities=18% Similarity=0.207 Sum_probs=139.0
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCCceEEEec
Q 002495 640 CCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-PSMPRLATSSFDKTVRVWDADNPGYSLRTFM 717 (915)
Q Consensus 640 ~lafsp-dg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fs-pdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~ 717 (915)
+++|.+ ++.++++-...+.|+.|+..+++... +.... ...+++. ++ ..|+++..++ +.++|+.+ +.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~-g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDT-GKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTT-TEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCC-CcEEEEee
Confidence 678988 67777776678999999998775543 22222 6677777 56 4566665555 56669887 33322222
Q ss_pred c-----CCCCeEEEEEcCCCCeEEEEEeCC--------CcEEEEEcCCCeeEEEee--cCceEEEEecCCCEEEEEEc-C
Q 002495 718 G-----HSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-E 781 (915)
Q Consensus 718 ~-----h~~~V~sl~fsp~~~~ll~s~s~D--------g~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~-d 781 (915)
. .....+++++.++|+ ++++.... |.|..++.. ++...... .....++|+++++.++++.. .
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 1 345688999999987 44454433 567888877 55444433 34567999999998876554 7
Q ss_pred CeEEEEECCC--c-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEE
Q 002495 782 NVVSILDAET--Q-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853 (915)
Q Consensus 782 g~I~i~D~~t--~-----~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 853 (915)
+.|..||+.. . +....+.........++++.+|++.++.... .|.++|.. + +.+..+......+++|+
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCA 231 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEE
Confidence 8899998853 2 1122223223347889999999977776655 99999976 4 45665655556899999
Q ss_pred Ee-CCCCEEEEEE
Q 002495 854 FH-PTYPSLLVIG 865 (915)
Q Consensus 854 ~s-pdg~~l~s~s 865 (915)
|. ++.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 94 6766666654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-08 Score=103.21 Aligned_cols=204 Identities=16% Similarity=0.275 Sum_probs=159.1
Q ss_pred ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC-CeeEE----EeecCceEEEEecCCCEEEEEEcCCeEE
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTR----VFKGGTAQMRFQPHLGRYLAAAAENVVS 785 (915)
Q Consensus 711 ~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~-~~~~~----~~~~~~~~v~~sp~~~~ll~~~~dg~I~ 785 (915)
..++.++||.+.|+....-|..+.++ +.+.|.++|||--++ ++.-. ....+..++.+.++..+|+++-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~-~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVI-SVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeE-EccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 45677889999999988888777676 999999999996544 33222 2244677888899989999999999998
Q ss_pred EEECC----CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCC-C---------------------------
Q 002495 786 ILDAE----TQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS-G--------------------------- 833 (915)
Q Consensus 786 i~D~~----t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s-~--------------------------- 833 (915)
-+.+. .....+....|...|..+.|+-..+++++.+.|+-..|.... +
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 88554 334555566788888888888877788777777333343211 0
Q ss_pred -----------CCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCC
Q 002495 834 -----------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETG 900 (915)
Q Consensus 834 -----------~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~ 900 (915)
.....+..+.+|...+.++.|.+....++++..|..|.+||+..++-+ .+.+|.+.|..+...+.-+
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~ 253 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR 253 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe
Confidence 112345567788899999999999999999999999999999766544 7889999999999999999
Q ss_pred EEEEEecCCcEEEcC
Q 002495 901 YVASASHDKFVKLWK 915 (915)
Q Consensus 901 ~Lasgs~Dg~I~IWd 915 (915)
.+++++.||.|.+|+
T Consensus 254 ~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWN 268 (404)
T ss_pred eeeeccCCCeEEEEe
Confidence 999999999999996
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-08 Score=102.74 Aligned_cols=234 Identities=17% Similarity=0.293 Sum_probs=147.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCce----EEEeccCC------------CCeEEEEEcCCC-CeEEEE
Q 002495 676 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS----LRTFMGHS------------ASVMSLDFHPNK-DDLICS 738 (915)
Q Consensus 676 h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~----~~~~~~h~------------~~V~sl~fsp~~-~~ll~s 738 (915)
..+.|+++.|...|.||++|...|.|.+|.-+....+ +..|.+|. ..|..|.|..++ ...++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3467999999999999999999999999987653311 22344553 357788887653 334446
Q ss_pred EeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEE---------cCCeEEEEECCCceEEEEecCCCCCeEEEE
Q 002495 739 CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA---------AENVVSILDAETQACRLSLQGHTKPIDSVC 809 (915)
Q Consensus 739 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~---------~dg~I~i~D~~t~~~~~~l~~h~~~V~si~ 809 (915)
.+.|.+|++|.+.......+.......-.-+|.++-+.+.. .|..|..+. +...-..|.--|+++.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p-----~rvyaNaH~yhiNSiS 179 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP-----CRVYANAHPYHINSIS 179 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc-----ceeccccceeEeeeee
Confidence 77899999999876533222111111111112221111100 011111111 1111245778899999
Q ss_pred EcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCC-----CceEEEEEeCC-CCEEEEEEcCCeEEEEECCCCc----
Q 002495 810 WDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG-----NKFHSCVFHPT-YPSLLVIGCYQSLELWNMSENK---- 879 (915)
Q Consensus 810 ~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~-----~~i~~i~~spd-g~~l~s~s~dg~I~iwd~~~~~---- 879 (915)
|..|...++++.+=.|.+|++.-....-.+..++.|. ..|++..|||. ...+...+..|.|++-|++...
T Consensus 180 ~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 180 FNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred ecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 9999888876654499999987654433444444443 24788889995 4567777888999999998321
Q ss_pred -EE----E--------EcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 880 -TM----T--------LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 880 -~~----~--------~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+. . +.+-...|..+.|+++|++|++-+. -+|+|||
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 11 1 1123357889999999999988654 4799997
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.8e-08 Score=103.61 Aligned_cols=238 Identities=16% Similarity=0.172 Sum_probs=159.7
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCceeeEeccC--CCcEEEEEECCC-CC-EEEEE-eC
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPS-MP-RLATS-SF 697 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~-Dg~V~vwd~~t~~~~~~l~~h--~~~V~~l~fspd-g~-~Lasg-s~ 697 (915)
-.+.+..++.|...|.+++.+-||.++++++. |+.++++|+++...+.-++.. .+.+. +..++. -. .|+++ -.
T Consensus 42 GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~ 120 (558)
T KOG0882|consen 42 GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFK 120 (558)
T ss_pred ceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeeccc
Confidence 44567778899999999999999999999887 999999999876655444322 22222 222222 11 33333 34
Q ss_pred CCeEEEEECCCCCce-EEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEE
Q 002495 698 DKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 776 (915)
Q Consensus 698 Dg~I~iWdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll 776 (915)
++.|.|+|-...... ...-.-|..+|.++.+.+-++..+ +....|.|..|..+. .+.-....+.
T Consensus 121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-SiD~~gmVEyWs~e~-----~~qfPr~~l~--------- 185 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SIDISGMVEYWSAEG-----PFQFPRTNLN--------- 185 (558)
T ss_pred CCCcEEECCcCCcCccceecccccCceEEEEeecccccee-eccccceeEeecCCC-----cccCcccccc---------
Confidence 889999998765533 344456999999999999877555 888889999998773 1111111111
Q ss_pred EEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEE--------------
Q 002495 777 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE-------------- 841 (915)
Q Consensus 777 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~-------------- 841 (915)
|.++...-+..+........+++|+|+|..+.+-..| .|+++++++++....+.+
T Consensus 186 ----------~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~ 255 (558)
T KOG0882|consen 186 ----------FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG 255 (558)
T ss_pred ----------ccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence 2222222333334455667899999999999999999 999999988743222211
Q ss_pred ---------------eccC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCC
Q 002495 842 ---------------LSCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 888 (915)
Q Consensus 842 ---------------~~~~-~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~ 888 (915)
+..+ ....+.++|...+++|+.++.-| |+|+++.+++++++.+...
T Consensus 256 l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e 317 (558)
T KOG0882|consen 256 LMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDE 317 (558)
T ss_pred cceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccch
Confidence 1111 22345678888999888877654 8889999888876665443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-05 Score=86.19 Aligned_cols=216 Identities=9% Similarity=0.052 Sum_probs=138.3
Q ss_pred EEEEECC-CCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe
Q 002495 681 TDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 759 (915)
Q Consensus 681 ~~l~fsp-dg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~ 759 (915)
.+++|.+ ++.++++-...+.|+.|+..+ +. ...+.... ...+++...++.++ .+.. +.+.++|+.+++....+
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~-~~-~~~~~~~~--~~G~~~~~~~g~l~-v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDT-GE-VEVIDLPG--PNGMAFDRPDGRLY-VADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTT-TE-EEEEESSS--EEEEEEECTTSEEE-EEET-TCEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCC-Ce-EEEEecCC--CceEEEEccCCEEE-EEEc-CceEEEecCCCcEEEEe
Confidence 3678888 666666666789999999987 32 22222222 67778873335555 4444 55566699988655443
Q ss_pred ec--------CceEEEEecCCCEEEEEEcC--------CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002495 760 KG--------GTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 823 (915)
Q Consensus 760 ~~--------~~~~v~~sp~~~~ll~~~~d--------g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d 823 (915)
.. ....+++.+++..+++.... +.|+.++.. ++...... .-...+.|+|+|+++.|+.+...
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence 32 23568899998866655543 568888888 55443333 34557899999999977655544
Q ss_pred --eEEEEECCCCCC-c---ceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEe
Q 002495 824 --SVRVWTVGSGSE-G---ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 896 (915)
Q Consensus 824 --~I~iwdl~s~~~-~---~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 896 (915)
.|..|++..... . ..+..+.......-.+++..+|+.+++....+.|.++|.. ++++ .+......+++++|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 888888864322 1 2222333333347889999999988887788999999988 6665 344334689999994
Q ss_pred -CCCCEEEEE
Q 002495 897 -TETGYVASA 905 (915)
Q Consensus 897 -pdg~~Lasg 905 (915)
++.+.|+..
T Consensus 234 g~~~~~L~vT 243 (246)
T PF08450_consen 234 GPDGKTLYVT 243 (246)
T ss_dssp STTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 665555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.1e-07 Score=96.41 Aligned_cols=248 Identities=16% Similarity=0.192 Sum_probs=149.0
Q ss_pred EEEEECCCCceeeEeccCCCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEE
Q 002495 659 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 737 (915)
Q Consensus 659 V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 737 (915)
|++.+..+.+....+.+|...|.+++|+|..+ +|..++.+.+|+|.|+++ ...+..+..+ ..+++++|.-+..++|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence 55666556666667778899999999999777 788999999999999998 6666777766 88999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeeEE-Eeec-----CceEE------EEecCCCEEEEEEcCCeEEEEEC----CCceEEEEecCC
Q 002495 738 SCDGDGEIRYWSINNGSCTR-VFKG-----GTAQM------RFQPHLGRYLAAAAENVVSILDA----ETQACRLSLQGH 801 (915)
Q Consensus 738 s~s~Dg~I~iwdl~~~~~~~-~~~~-----~~~~v------~~sp~~~~ll~~~~dg~I~i~D~----~t~~~~~~l~~h 801 (915)
+|...|.|.|||++..+-.. .+.+ .+..+ ...+.++.+++...+- ..|+. ....++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l--~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL--QFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhh--hhhhhhccccCCCcccccC-C
Confidence 99999999999998654211 1111 11111 2333445454444332 23332 2222322222 2
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCC----eEEEE----ECCCCCCcceEE-EeccC-CCc------eEEEEEeCCCCEEEEE
Q 002495 802 TKPIDSVCWDPSGE-LLASVSED----SVRVW----TVGSGSEGECVH-ELSCN-GNK------FHSCVFHPTYPSLLVI 864 (915)
Q Consensus 802 ~~~V~si~~spdg~-~Las~s~d----~I~iw----dl~s~~~~~~i~-~~~~~-~~~------i~~i~~spdg~~l~s~ 864 (915)
.+.+.++.+++..+ +|++.-.+ .++.. |.+++ ..+. .-..+ +.+ -..+.-.++.++|+..
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG---~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG---FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC---ceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 34455555655444 34443332 11111 11111 1111 11111 111 1112223455555544
Q ss_pred Ec-CCeEEEEECCCCcEEEEcccCCCeEEEEEeCC--CCEEEEEecCCcEEEcC
Q 002495 865 GC-YQSLELWNMSENKTMTLTAHEGLIAALAVSTE--TGYVASASHDKFVKLWK 915 (915)
Q Consensus 865 s~-dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd--g~~Lasgs~Dg~I~IWd 915 (915)
+. .+.+.+||..+.+++.-.....+|.+++.... +.||++- .|..++||+
T Consensus 407 gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk 459 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYK 459 (463)
T ss_pred cCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEe
Confidence 43 46999999999999866666688998887542 3466655 455788875
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7e-07 Score=90.59 Aligned_cols=196 Identities=11% Similarity=0.063 Sum_probs=129.8
Q ss_pred CCeEEEEECCCCCc-eEEEeccCCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCCCeeEEE-eecCceEEE----
Q 002495 698 DKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRV-FKGGTAQMR---- 767 (915)
Q Consensus 698 Dg~I~iWdl~~~~~-~~~~~~~h~~~V~sl~fsp~----~~~ll~s~s~Dg~I~iwdl~~~~~~~~-~~~~~~~v~---- 767 (915)
...|-+|++.+..+ .+..+.+ +.|.|. ...+|+.|+..|.+.+|...+...... ...+...+.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y~g-------~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFYTG-------MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEeeec-------ccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 34578888876332 2333332 444442 233677888999999999986543322 222222221
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCC
Q 002495 768 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 846 (915)
Q Consensus 768 ~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~ 846 (915)
+....-.++.++.|.++++++++-+.....+....-.+.++++++|++++++.++. .|.+|.+....+...-.......
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 12222456777888888888877654333322222338899999999999999988 99999997654433222333334
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE------EEcccCCCeEEEEEeCCCC
Q 002495 847 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETG 900 (915)
Q Consensus 847 ~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~------~~~~h~~~V~~l~~spdg~ 900 (915)
..-.+..|+.....++++..||++.|||++..... ....|.+.|+.+.|++.|.
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 45567789999999999999999999999875433 3446899999999998654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-06 Score=98.86 Aligned_cols=253 Identities=10% Similarity=0.076 Sum_probs=151.5
Q ss_pred CCEEEEEECCCcEEEEECCCCceeeEeccCCC----------cEE-EEEECCCCCEEEEEeCCCeEEEEECCCCCceEEE
Q 002495 647 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS----------LIT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 715 (915)
Q Consensus 647 g~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~----------~V~-~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~ 715 (915)
+..|++++.+|.|.-+|.++++.+........ .+. .+.. ++..|+.++.+|.|+.+|.++ ++.+..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAED-GEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCC-CCCccc
Confidence 55777888889999999999988776653221 000 0111 356788888999999999988 555444
Q ss_pred eccCCCCeEE-EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEE----Ee--cCCCEEEEEEcCCeEEEEE
Q 002495 716 FMGHSASVMS-LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR----FQ--PHLGRYLAAAAENVVSILD 788 (915)
Q Consensus 716 ~~~h~~~V~s-l~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~----~s--p~~~~ll~~~~dg~I~i~D 788 (915)
..... .+.+ ..+. ++. ++.+..++.|+.+|.++|+.+..+......+. .+ ..++.++++..++.+..+|
T Consensus 146 ~~~~~-~~~ssP~v~--~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVAG-EALSRPVVS--DGL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCCC-ceecCCEEE--CCE-EEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 43222 2221 1222 233 44677799999999999999887764321110 01 1245678888899999999
Q ss_pred CCCceEEEEecCCCC-------CeEEEEEcC--CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002495 789 AETQACRLSLQGHTK-------PIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 858 (915)
Q Consensus 789 ~~t~~~~~~l~~h~~-------~V~si~~sp--dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg 858 (915)
..+++.+........ ....+..+| .+..+++++.+ .+..+|..+++. +..... .....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~---~W~~~~--~~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI---VWKREY--GSVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE---EEeecC--CCccCcE--EEC
Confidence 999987665432110 011111122 23445555555 899999988742 222211 1111122 246
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEE-EcccC-CCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 859 PSLLVIGCYQSLELWNMSENKTMT-LTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 859 ~~l~s~s~dg~I~iwd~~~~~~~~-~~~h~-~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
..|++++.++.|..+|..+++.+. ..... ....+..+ .+.+|+.++.||.|+++|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 678888999999999999998762 21111 11222222 244677778888877653
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.2e-06 Score=85.93 Aligned_cols=224 Identities=16% Similarity=0.119 Sum_probs=121.3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCC--ceeeEecc---CCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEE
Q 002495 641 CHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEE---HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 715 (915)
Q Consensus 641 lafspdg~~Lasgs~Dg~V~vwd~~t~--~~~~~l~~---h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~ 715 (915)
++.+.||++||+.- |..|.|=..+.. ..+..... ..-.=+.++|+||+..||.+...|+|+|||+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEE
Confidence 56778998888764 666666654321 11222222 223356799999999999999999999999974 33334
Q ss_pred eccCC-------CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEE
Q 002495 716 FMGHS-------ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 788 (915)
Q Consensus 716 ~~~h~-------~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D 788 (915)
+.... ..|..+.|.+. +.. ......+++...+|.++-|-
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~-------------------~~s---------------~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEY-------------------KKS---------------AQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred cCcccccCCccccceeeeEeecc-------------------ccc---------------cccceeEEEEeccceeeeEE
Confidence 33211 12222222211 000 00112344444444444333
Q ss_pred CC-----CceEEEE--ecC-CCCCeEEEEEcCCCCEEEEEeCC-e-EEEEECCCCCCcceEEEeccCCCceEEEEEeCCC
Q 002495 789 AE-----TQACRLS--LQG-HTKPIDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 858 (915)
Q Consensus 789 ~~-----t~~~~~~--l~~-h~~~V~si~~spdg~~Las~s~d-~-I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg 858 (915)
+. .....++ +.. +...|.+++|+|..++|++++.. . -..+.. ....+++-.+-.+.
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a--------------~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKA--------------SSCGLTAWRILSDS 191 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccc--------------cccCceEEEEcCCC
Confidence 21 1122222 222 46789999999998877777654 2 000000 01112211111111
Q ss_pred CEE--EEEEcCC------eEEEEECCCCcEEE-EcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 859 PSL--LVIGCYQ------SLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 859 ~~l--~s~s~dg------~I~iwd~~~~~~~~-~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.+. ++...|+ +..+|.+-+.+... .......|..|..+|||..||+...+|.|.||+
T Consensus 192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 111 1112121 23445544443332 234577899999999999999999999999995
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.6e-08 Score=103.38 Aligned_cols=121 Identities=20% Similarity=0.233 Sum_probs=89.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEe
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 716 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~ 716 (915)
.|+.+.++........+++...+.+|....+. ...+-+|-..+++|+|++|+++|+++..|..|||-........-...
T Consensus 112 ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc 190 (390)
T KOG3914|consen 112 AISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC 190 (390)
T ss_pred eeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence 34444443333333334445566666655543 34455899999999999999999999999999998887633333445
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee
Q 002495 717 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 760 (915)
Q Consensus 717 ~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~ 760 (915)
.||+..|..++..++ ++|++++.|++|++||+++++++.++.
T Consensus 191 lGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence 689999999999875 356799999999999999999887764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-05 Score=85.24 Aligned_cols=246 Identities=15% Similarity=0.122 Sum_probs=159.4
Q ss_pred CeEEEEEcC-CCCEEEEEECCCc-EEEEECCCCceeeEeccCCCcE--EEEEECCCCCEEEEEeC-----CCeEEEEECC
Q 002495 637 KVICCHFSS-DGKLLATGGHDKK-AVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSSF-----DKTVRVWDAD 707 (915)
Q Consensus 637 ~V~~lafsp-dg~~Lasgs~Dg~-V~vwd~~t~~~~~~l~~h~~~V--~~l~fspdg~~Lasgs~-----Dg~I~iWdl~ 707 (915)
....++.+| ++..+|.+-.-|+ ..+||..+++....+....+.- -.-+|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345677888 5567777766664 6789999988887765433222 13489999999998743 5889999999
Q ss_pred CCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEE
Q 002495 708 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 787 (915)
Q Consensus 708 ~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~ 787 (915)
..-..+..+..|.-.-..|.+.||++.|++.- |-|.- ..++++.. +=....+-.+.+.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN---GGI~T-hpd~GR~k------------------LNl~tM~psL~~l 143 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVAN---GGIET-HPDSGRAK------------------LNLDTMQPSLVYL 143 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEc---CCCcc-CcccCcee------------------cChhhcCCceEEE
Confidence 65677788888887778899999997776442 22211 11111111 1112234456667
Q ss_pred ECCCceEEEE--e--cCCCCCeEEEEEcCCCCEEEEEeCC--------eEEEEECCCCCCcceEE----EeccCCCceEE
Q 002495 788 DAETQACRLS--L--QGHTKPIDSVCWDPSGELLASVSED--------SVRVWTVGSGSEGECVH----ELSCNGNKFHS 851 (915)
Q Consensus 788 D~~t~~~~~~--l--~~h~~~V~si~~spdg~~Las~s~d--------~I~iwdl~s~~~~~~i~----~~~~~~~~i~~ 851 (915)
|.++++.+.. + ..|...|+.+++..+|..++..-.. -|.+++... ....+. ....-.+.+-+
T Consensus 144 d~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gS 221 (305)
T PF07433_consen 144 DARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGS 221 (305)
T ss_pred ecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEE
Confidence 7888877665 4 3377789999999999877665432 244444322 111111 11223567899
Q ss_pred EEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002495 852 CVFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 908 (915)
Q Consensus 852 i~~spdg~~l~s~s~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D 908 (915)
|+++.++..+++.+-- +.+.+||..+++.+....- ..++.++...++ +++|.+..
T Consensus 222 Ia~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 222 IAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCc
Confidence 9999999988777655 5999999999998844332 235666666666 66665543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.9e-08 Score=100.92 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=121.9
Q ss_pred EEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC----CceEEEeccCCCCeEEE
Q 002495 651 ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSLRTFMGHSASVMSL 726 (915)
Q Consensus 651 asgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~----~~~~~~~~~h~~~V~sl 726 (915)
++.+.+-.|.|-|++++-. ..|. ..+.|.++.|.-.+.+++.|+..|.|.++|++.. +.+...+. |...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 4555677888899887642 2233 5677999999998999999999999999999874 44555444 88999998
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEEcCCCee---EEEeecCceE-----EEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 002495 727 DFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQ-----MRFQPHLGRYLAAAAENVVSILDAETQACRLSL 798 (915)
Q Consensus 727 ~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~---~~~~~~~~~~-----v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l 798 (915)
.........|++.+.+|+|++||++.-++ +..+++++.. +.+.+..+.+++++.|...+||.++.+..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 87763344555888999999999998887 8889988765 345677789999999999999999999888877
Q ss_pred cCCC----CCeEEEEEc
Q 002495 799 QGHT----KPIDSVCWD 811 (915)
Q Consensus 799 ~~h~----~~V~si~~s 811 (915)
.... ..+.+++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 6432 234455554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.4e-06 Score=87.06 Aligned_cols=210 Identities=14% Similarity=0.101 Sum_probs=129.9
Q ss_pred CCCeEEEEECCCCCceEEEeccC--CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCce-EEEEecCCC
Q 002495 697 FDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-QMRFQPHLG 773 (915)
Q Consensus 697 ~Dg~I~iWdl~~~~~~~~~~~~h--~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~-~v~~sp~~~ 773 (915)
.+|+|..||..+ ++.+....-- .....+..+ ++++.++ +++.++.|+.||..+|+.+..+..... .......++
T Consensus 1 ~~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRT-GKELWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGG 77 (238)
T ss_dssp -TSEEEEEETTT-TEEEEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETT
T ss_pred CCCEEEEEECCC-CCEEEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeeccccccceeeeccc
Confidence 368899999987 5555544321 122222122 2345555 667899999999999998887764211 111245567
Q ss_pred EEEEEEcCCeEEEEECCCceEEEEe-cCCCC---CeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCc
Q 002495 774 RYLAAAAENVVSILDAETQACRLSL-QGHTK---PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 848 (915)
Q Consensus 774 ~ll~~~~dg~I~i~D~~t~~~~~~l-~~h~~---~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 848 (915)
.++++..++.|+.+|.++++.+..+ ..... .........++..++++..+ .|..+|++++ +.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPR 154 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCC
Confidence 8888888999999999999998884 32211 11222233337777777755 9999999988 444444332211
Q ss_pred ----------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 849 ----------FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 849 ----------i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+..-.+..++ .+++++.++.+..+|+.+++.+. ......+..+ ...++..|+.++.|+.|.+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1122222344 78888888854444999999763 2223333332 346777888888999999886
|
... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-08 Score=114.75 Aligned_cols=201 Identities=15% Similarity=0.274 Sum_probs=148.1
Q ss_pred CCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCC-c
Q 002495 666 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-E 744 (915)
Q Consensus 666 t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg-~ 744 (915)
..+..++|+.|....+|++|+-+.+.|++|+..|.|++|++.+ +.....+.+|...|+-|.-+.+|..++.+++... -
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCch
Confidence 4566777888999999999999999999999999999999998 7777888999999999999999888876665555 5
Q ss_pred EEEEEcCC-CeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEec-C---CCCCeEEEEEcCCCCEEEE
Q 002495 745 IRYWSINN-GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-G---HTKPIDSVCWDPSGELLAS 819 (915)
Q Consensus 745 I~iwdl~~-~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~-~---h~~~V~si~~spdg~~Las 819 (915)
..+|++.+ +...+.|. ...++.|+.....-++++......|||+.++..+.++. + ....-+++.|+|+..+|+-
T Consensus 1169 saLW~~~s~~~~~Hsf~-ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD-EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred HHHhccccccCcccccc-ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 77999875 23344443 34567777766566667777889999999987665532 1 1222367899998887764
Q ss_pred EeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002495 820 VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 881 (915)
Q Consensus 820 ~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~ 881 (915)
-+ .+||++.......+..+. ....-.|||.|..++.-+ .|||+++.+.+
T Consensus 1248 dG----vLWDvR~~~aIh~FD~ft----~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1248 DG----VLWDVRIPEAIHRFDQFT----DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred Cc----eeeeeccHHHHhhhhhhe----ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 32 589998763332222222 122336999999888865 58999887654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-06 Score=92.82 Aligned_cols=245 Identities=12% Similarity=0.082 Sum_probs=149.5
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCC-EEEEEeCCCeE
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTV 701 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I 701 (915)
+|+....+..|...|..++|||..+ +|..++.+.+|+|.|+++...+..+..| ..+++++|.-|.. +|+.|-..|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 5555667889999999999999877 7888999999999999999989888888 7899999998665 66777779999
Q ss_pred EEEECCCCCceEEEecc--CCCCeEEEEEcC------CCCeEEEEEeCCCcEEEEEcCCC----eeEEEeecCceE--EE
Q 002495 702 RVWDADNPGYSLRTFMG--HSASVMSLDFHP------NKDDLICSCDGDGEIRYWSINNG----SCTRVFKGGTAQ--MR 767 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~--h~~~V~sl~fsp------~~~~ll~s~s~Dg~I~iwdl~~~----~~~~~~~~~~~~--v~ 767 (915)
.|||++.+...+..+.+ ...+|..|+.-+ .++ +++... -.+..|++.-. .++..++....+ +.
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~l--t~l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFAL--TVLQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeee--hhhhhhhhhccccCCCcccccCCCcceeeee
Confidence 99999976555444443 223444444322 222 332332 23456665432 222333322233 33
Q ss_pred EecCCCEEEEEEcCC-------eE-EEEECCCceEEEEec-CC-CCC------eEEEEEcCCCCEEEEEeCC--eEEEEE
Q 002495 768 FQPHLGRYLAAAAEN-------VV-SILDAETQACRLSLQ-GH-TKP------IDSVCWDPSGELLASVSED--SVRVWT 829 (915)
Q Consensus 768 ~sp~~~~ll~~~~dg-------~I-~i~D~~t~~~~~~l~-~h-~~~------V~si~~spdg~~Las~s~d--~I~iwd 829 (915)
+.+..+++++....+ .| .-.|.+++..+...+ .+ ... -..+.-.++.++|+..+++ .+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 444446666655431 11 112344443333221 12 111 0112223455777766666 899999
Q ss_pred CCCCCCcceEEEeccCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECC
Q 002495 830 VGSGSEGECVHELSCNGNKFHSCVF-HPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 830 l~s~~~~~~i~~~~~~~~~i~~i~~-spdg~~l~s~s~dg~I~iwd~~ 876 (915)
..+. ..+..+... .+|.+++. +-++..++..-.|..++||..+
T Consensus 418 ~~s~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSF---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cchh---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 9877 455555443 56666653 3455555555667778887654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.1e-07 Score=90.25 Aligned_cols=164 Identities=13% Similarity=0.147 Sum_probs=108.2
Q ss_pred eeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-eeeEeccCCCcEEEEEECCCCCEEEEEeC-----CCe
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRLATSSF-----DKT 700 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----Dg~ 700 (915)
....+..|.+.-.+-+.+--++.++++..||.+.+++.+... ..+.+..-...-.+.++...++.|.++.. -+.
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence 444455666666666666677889999999999999987521 12222221112223333344444444421 234
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE----EEeecCceEEEEecCC-CEE
Q 002495 701 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RVFKGGTAQMRFQPHL-GRY 775 (915)
Q Consensus 701 I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~----~~~~~~~~~v~~sp~~-~~l 775 (915)
.++|+++-.+..+.... ....|.+++-+|.-.+++++|+.||.|-+||.+..... +..+..+..+.|+|.+ .+|
T Consensus 161 ~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred eeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 66777765333222222 22349999999998899999999999999999987433 2234567788999876 578
Q ss_pred EEEEcCCeEEEEECCC
Q 002495 776 LAAAAENVVSILDAET 791 (915)
Q Consensus 776 l~~~~dg~I~i~D~~t 791 (915)
++++.||.+..||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999875
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-06 Score=100.25 Aligned_cols=273 Identities=18% Similarity=0.180 Sum_probs=167.0
Q ss_pred eEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCC-cEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSSFDKTVRVWDAD 707 (915)
Q Consensus 629 ~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~-~V~~l~fspdg~~Lasgs~Dg~I~iWdl~ 707 (915)
...-..-+.|.+++|.....++..|+..|.+.-+-+...+....+..|.- .|..+..... -+++.+ +..++ +-++
T Consensus 48 ~~~~~~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~--~i~~ls-~~alr-~~~r 123 (1118)
T KOG1275|consen 48 ISVGASYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTES--GIFTLS-KTALR-ATTR 123 (1118)
T ss_pred eeeccccccccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhh--hheeee-HHHhh-hhhc
Confidence 33344455788888888777777787777666554443333333433321 1111111111 111111 11111 0000
Q ss_pred CCCceEEEeccCC--CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEE-ecCCCEEEEEEcCCeE
Q 002495 708 NPGYSLRTFMGHS--ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF-QPHLGRYLAAAAENVV 784 (915)
Q Consensus 708 ~~~~~~~~~~~h~--~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~-sp~~~~ll~~~~dg~I 784 (915)
.+.++..+.... .-...+... ...++-|+.-..|..+|+++.+..+...-....+.+ ..++..+++|...|+|
T Consensus 124 -~gl~~~~~~~~s~~~M~~~~~~~---~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V 199 (1118)
T KOG1275|consen 124 -QGLPVFDFTCPSMTKMASSLHMG---PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTV 199 (1118)
T ss_pred -cCceeecccCCCHHHHHHHhccC---CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceE
Confidence 011111111100 001111122 223447777888999999999888877654433443 3444677777789999
Q ss_pred EEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC---------C-eEEEEECCCCCCcceEEEeccCCCceEEEEE
Q 002495 785 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 854 (915)
Q Consensus 785 ~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~---------d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 854 (915)
.+-|.++.+.++++.+|.+.|..+.. .|++|++|+. | .|+|||+++-+....+... .+ ..-+.|
T Consensus 200 ~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~-P~flrf 273 (1118)
T KOG1275|consen 200 FLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YG-PQFLRF 273 (1118)
T ss_pred EeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---cC-chhhhh
Confidence 99999999999999999999986554 5899998874 3 5899999876443333321 11 134567
Q ss_pred eCCC-CEEEEEEcCCeEEEEE---CCCCcE--EEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 855 HPTY-PSLLVIGCYQSLELWN---MSENKT--MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 855 spdg-~~l~s~s~dg~I~iwd---~~~~~~--~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+|.. ..+++++..|...+-| +.+... ..+......+.++++++++..++.|..+|.|.+|.
T Consensus 274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 274 HPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8864 5688889999999998 444322 23444555699999999999999999999999994
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.5e-05 Score=77.49 Aligned_cols=255 Identities=14% Similarity=0.111 Sum_probs=132.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEE
Q 002495 646 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 725 (915)
Q Consensus 646 dg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~s 725 (915)
-|++++.|++.|.+++.+++++.....+.....--......+++..|++|+.|++.+..|.++ ..++...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceecc
Confidence 467899999999999999999987777654433223334567888999999999999999998 5555555433333334
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE--ee--cCc--eEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEec
Q 002495 726 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FK--GGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 799 (915)
Q Consensus 726 l~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~--~~--~~~--~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 799 (915)
-++.+-...++ .+...|.|.--..+....... +. +++ ..+++ +..+..++-||.+.-+| +.++.+..+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 44555333344 344456665555554422111 11 111 01111 12344455566666666 4444444332
Q ss_pred CCCCCeEE-EEEc-CCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeccCCCceEEEEEeC----CCCEEEEE
Q 002495 800 GHTKPIDS-VCWD-PSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP----TYPSLLVI 864 (915)
Q Consensus 800 ~h~~~V~s-i~~s-pdg~~Las~s~d---------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp----dg~~l~s~ 864 (915)
..++|.. -+-+ |....|..+.++ .-.+|...++. ..+.... +-....++. ..+++..+
T Consensus 216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~---t~~vy~~---p~l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGT---TLHVYLS---PKLRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCc---EEEEEeC---cccceeccCCCCcchhhhhhh
Confidence 1222211 1111 222333333333 33456655541 1111100 000112221 13456777
Q ss_pred EcCCeEEEEECCCCcEEEEcccCCCeEEE---EE------eC---CCCEEEEEecCCcEEEcC
Q 002495 865 GCYQSLELWNMSENKTMTLTAHEGLIAAL---AV------ST---ETGYVASASHDKFVKLWK 915 (915)
Q Consensus 865 s~dg~I~iwd~~~~~~~~~~~h~~~V~~l---~~------sp---dg~~Lasgs~Dg~I~IWd 915 (915)
+.||++.|.-.+.. +.....|.+.+-.+ -. +| +| +|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEe
Confidence 88998888744332 12233333322222 11 12 34 577888999999886
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-06 Score=93.39 Aligned_cols=158 Identities=13% Similarity=0.128 Sum_probs=106.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCc----eeeEeccCCCcEEEEEECCCCCEEEEEe---CCCeEEEEECCCC
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNLEEHSSLITDVRFSPSMPRLATSS---FDKTVRVWDADNP 709 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~----~~~~l~~h~~~V~~l~fspdg~~Lasgs---~Dg~I~iWdl~~~ 709 (915)
.+..+.+++++++||++..++...++++.... ++..+. -...-+++.|..+...+.++. +...+.+|....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence 45556678889999999888887777765322 222221 222334455555555555444 444555565553
Q ss_pred CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec-C---ceEEEEecCCCEEEEEEcCCeEE
Q 002495 710 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-G---TAQMRFQPHLGRYLAAAAENVVS 785 (915)
Q Consensus 710 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~-~---~~~v~~sp~~~~ll~~~~dg~I~ 785 (915)
.+.+.+.||-..++.|+|+||+. +|++++.|..||+-....--.+..|-- + +..+++.++ ..|++++.|++|+
T Consensus 142 -~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 142 -GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR 218 (390)
T ss_pred -cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence 45566778999999999999976 555999999999987776555554432 2 344444443 4478999999999
Q ss_pred EEECCCceEEEEec
Q 002495 786 ILDAETQACRLSLQ 799 (915)
Q Consensus 786 i~D~~t~~~~~~l~ 799 (915)
+||+++++++.++.
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 99999999886654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-05 Score=91.65 Aligned_cols=222 Identities=12% Similarity=0.133 Sum_probs=125.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe
Q 002495 675 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 754 (915)
Q Consensus 675 ~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~ 754 (915)
...-....+.++|+++.+++ +.||...||.... ... .. .+....++|...+. +|+-...++|.|+.--+.+
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-~r~-k~----~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-WRN-KA----FGSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-TEE-EE----EEE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-Ccc-cc----cCceeEEEEecCcc--EEEEECCCeEEEEEcCccc
Confidence 34455789999999999888 4577788887432 111 11 23345688888433 4466668899997433333
Q ss_pred eEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC-
Q 002495 755 CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG- 833 (915)
Q Consensus 755 ~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~- 833 (915)
..+.+......-.+.. +.++....++.|.+||+.+++.+..+... +|..|.|+++|++++..+.+.+.|++....
T Consensus 101 ~~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~ 176 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEA 176 (443)
T ss_dssp TT-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHH
T ss_pred cceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchh
Confidence 3334443332222222 55566666669999999999999998743 489999999999999999998888775422
Q ss_pred -----C--CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002495 834 -----S--EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 906 (915)
Q Consensus 834 -----~--~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 906 (915)
. ....+..+..-...|.+.+|..+ .|+..+.. .|+. +..|+...+..-+.++.=+.+.+....|+...
T Consensus 177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~D 251 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLID 251 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-
T ss_pred cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEE
Confidence 0 01123333322567888899877 55555555 7776 56677666666677888888888778888888
Q ss_pred cCCcEEEc
Q 002495 907 HDKFVKLW 914 (915)
Q Consensus 907 ~Dg~I~IW 914 (915)
.|+.|..+
T Consensus 252 r~~~v~~~ 259 (443)
T PF04053_consen 252 RDGNVISY 259 (443)
T ss_dssp TT--EEEE
T ss_pred CCCCEEEE
Confidence 88888654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.2e-07 Score=96.31 Aligned_cols=232 Identities=13% Similarity=0.139 Sum_probs=160.7
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC--CCceEEEeccCCCCeEEEEEcCCCCeEEEEEeC-CCcEEEEEcC
Q 002495 675 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSIN 751 (915)
Q Consensus 675 ~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~--~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~-Dg~I~iwdl~ 751 (915)
-|.+.|+.+.-. -.+++++++.||.++.|.-.. .-+.+..+..|-..|.+++.+-++ .+++|.+. |..++++|++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence 477777776554 456999999999999997643 223455667788889999988874 57778666 9999999999
Q ss_pred CCeeEEEeec----CceEEEEecCCC--EEEEEE-cCCeEEEEECCCce--EEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002495 752 NGSCTRVFKG----GTAQMRFQPHLG--RYLAAA-AENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSE 822 (915)
Q Consensus 752 ~~~~~~~~~~----~~~~v~~sp~~~--~ll~~~-~dg~I~i~D~~t~~--~~~~l~~h~~~V~si~~spdg~~Las~s~ 822 (915)
+-..+..++. +..+...++.+. .+++.. .++.|.|+|-.... ....-.-|..+|.++.+.+.+..+++...
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 8765543332 112222222221 233332 37899999988664 33344459999999999999999988887
Q ss_pred C-eEEEEECCC-CC-----------CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEc-----
Q 002495 823 D-SVRVWTVGS-GS-----------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT----- 884 (915)
Q Consensus 823 d-~I~iwdl~s-~~-----------~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~----- 884 (915)
. .|..|.... .. ....+..+........++.|+|++..+.+.+.|..|+++++++++++...
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 7 899998863 00 01112223334566789999999999999999999999999988654111
Q ss_pred ----------------------------ccCC-CeEEEEEeCCCCEEEEEecC
Q 002495 885 ----------------------------AHEG-LIAALAVSTETGYVASASHD 908 (915)
Q Consensus 885 ----------------------------~h~~-~V~~l~~spdg~~Lasgs~D 908 (915)
.|.. .-+.++|...+++|+.|+-=
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~ 297 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL 297 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce
Confidence 1222 33567888889888877643
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-05 Score=82.17 Aligned_cols=188 Identities=15% Similarity=0.114 Sum_probs=111.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEecc-------CCCcEEEEEECCC------CCEEEEEeCCCeEEE
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPS------MPRLATSSFDKTVRV 703 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~-------h~~~V~~l~fspd------g~~Lasgs~Dg~I~i 703 (915)
.=+-++||||+.+||.+...|+|+|||+.... +..+.. -...|..+.|... ...|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 34678999999999999999999999987533 333322 2356778888652 225777778888887
Q ss_pred EECCC----CCceEEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEE
Q 002495 704 WDADN----PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 776 (915)
Q Consensus 704 Wdl~~----~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll 776 (915)
|-+.. +......+. .+...|.++.|+|..+.|++.|.....-..+. ....+.++-++..+..++.
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~--------a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK--------ASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc--------ccccCceEEEEcCCCCcEE
Confidence 77632 122222222 34678999999999776665555433211110 0011111111111111111
Q ss_pred --EEEcCC------eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002495 777 --AAAAEN------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 833 (915)
Q Consensus 777 --~~~~dg------~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 833 (915)
+...|+ +..+|.+-+.+.........+.|..|..+|||.+||+...+ .|.+|++-+-
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 111111 11233332222222222356789999999999999999988 9999999754
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.5e-05 Score=81.32 Aligned_cols=267 Identities=14% Similarity=0.103 Sum_probs=136.3
Q ss_pred EEcCCCCEEEEEE-CCC--cEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEecc
Q 002495 642 HFSSDGKLLATGG-HDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 718 (915)
Q Consensus 642 afspdg~~Lasgs-~Dg--~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~ 718 (915)
+|..||+.|+.++ .|| .+.+.|+++++......+.........++++++.|+-...+..|+..|+++ .+....+.-
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEEC
Confidence 5788996665555 455 566678888776555444333344567788888887776677899999998 444455555
Q ss_pred CCCCeEEEEEcCC-CCeEEEEEe----------------------CCCcEEEEEcCCCeeEEEeecCc--eEEEEecCCC
Q 002495 719 HSASVMSLDFHPN-KDDLICSCD----------------------GDGEIRYWSINNGSCTRVFKGGT--AQMRFQPHLG 773 (915)
Q Consensus 719 h~~~V~sl~fsp~-~~~ll~s~s----------------------~Dg~I~iwdl~~~~~~~~~~~~~--~~v~~sp~~~ 773 (915)
....+-...|..+ +..+++.+- -.+.|...|+.+++....+.... ..+.|+|.+.
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP 200 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence 5555544555422 222332211 13456677888887766665543 6788999998
Q ss_pred EEEEEEcCC-----eEEEEECCC-ceEEEEecCCCC--CeEEEEEcCCCCEEEEEeC-----C-eEEEEECCCCCCcceE
Q 002495 774 RYLAAAAEN-----VVSILDAET-QACRLSLQGHTK--PIDSVCWDPSGELLASVSE-----D-SVRVWTVGSGSEGECV 839 (915)
Q Consensus 774 ~ll~~~~dg-----~I~i~D~~t-~~~~~~l~~h~~--~V~si~~spdg~~Las~s~-----d-~I~iwdl~s~~~~~~i 839 (915)
.+++-|.+| .-+||-+++ +.....+..+.. .+..=-|.+||..|.-.+. + .|.-+|+.+++.. .+
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~-~~ 279 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR-RL 279 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE-EE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce-EE
Confidence 888877654 225554432 333333333322 3444468999996554322 3 5777888776432 22
Q ss_pred EEeccCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCcEEEEcccCCC-----------eEE
Q 002495 840 HELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------------SLELWNMSENKTMTLTAHEGL-----------IAA 892 (915)
Q Consensus 840 ~~~~~~~~~i~~i~~spdg~~l~s~s~dg----------------~I~iwd~~~~~~~~~~~h~~~-----------V~~ 892 (915)
... .....+-.++|+.+++-=+.|. -|+++++..+....+..|... =-.
T Consensus 280 ~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPh 355 (386)
T PF14583_consen 280 MEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPH 355 (386)
T ss_dssp EEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT---
T ss_pred EeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCC
Confidence 222 1344556678888666555542 567788888776544444321 135
Q ss_pred EEEeCCCCEEEE-EecCCcEEEc
Q 002495 893 LAVSTETGYVAS-ASHDKFVKLW 914 (915)
Q Consensus 893 l~~spdg~~Las-gs~Dg~I~IW 914 (915)
..|+||+++|+- +...|...||
T Consensus 356 p~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 356 PSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CccCCCCCEEEEECCCCCCccEE
Confidence 789999997655 4457776665
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.6e-05 Score=84.61 Aligned_cols=256 Identities=15% Similarity=0.159 Sum_probs=151.0
Q ss_pred cCCCCEEEEEE---------CCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceE-
Q 002495 644 SSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL- 713 (915)
Q Consensus 644 spdg~~Lasgs---------~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~- 713 (915)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.++++.+. ...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~-~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG-QETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS-EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCC-CeEE
Confidence 67888877743 346889999998765554444 67789999999999999886 678999988763 222
Q ss_pred EEecc-------C---------CCCeEEEEEcCCCCeEEEEEeCCCcEEEE-----------------------------
Q 002495 714 RTFMG-------H---------SASVMSLDFHPNKDDLICSCDGDGEIRYW----------------------------- 748 (915)
Q Consensus 714 ~~~~~-------h---------~~~V~sl~fsp~~~~ll~s~s~Dg~I~iw----------------------------- 748 (915)
.+..| - -+.-..+.|+||+..+++.--++..|+.+
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 22222 0 12234588999999887665555444433
Q ss_pred ------EcCCCeeEEEe-e-------cCceEEEEecCCCEEEEEEcC-----CeEEEEECCCceEEEEecC-CCCCe---
Q 002495 749 ------SINNGSCTRVF-K-------GGTAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQG-HTKPI--- 805 (915)
Q Consensus 749 ------dl~~~~~~~~~-~-------~~~~~v~~sp~~~~ll~~~~d-----g~I~i~D~~t~~~~~~l~~-h~~~V--- 805 (915)
|+.+++....- . .-...+.|.+++..+++.-.+ ..+.++|..++.+...+.. ....|
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 33333221100 0 012346788887745544332 2667778877754433322 22332
Q ss_pred EEEEEc-CCCC-EEEEEeCC---eEEEEECCCCCCcceEEEeccCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEE
Q 002495 806 DSVCWD-PSGE-LLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCY-----QSLELWN 874 (915)
Q Consensus 806 ~si~~s-pdg~-~Las~s~d---~I~iwdl~s~~~~~~i~~~~~~~~~i~~-i~~spdg~~l~s~s~d-----g~I~iwd 874 (915)
..+.|. +++. +|.....+ .|.+++...+. ...+......|.. +.++++++.|+..+.. ..|+..+
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~----~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK----PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE----EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEcccccc----eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 355665 6665 44444444 67788876542 3455555556644 6788888777655543 2677778
Q ss_pred CC-CCcEEEEcccCCCeEEEEEeCCCCEEEEEe
Q 002495 875 MS-ENKTMTLTAHEGLIAALAVSTETGYVASAS 906 (915)
Q Consensus 875 ~~-~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 906 (915)
+. .+....+....+.-..+.|+|++++++..+
T Consensus 314 ~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred eCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 88 666666665555447999999999877544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.5e-05 Score=94.13 Aligned_cols=238 Identities=13% Similarity=0.158 Sum_probs=150.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEE
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 714 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~ 714 (915)
.+.|.++.|.-++.-++.+..+|.|.+.|.++.. ......-...|.+++|+||...|+..+.+++|.+-+-. -.++.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~--f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD--FEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc--ccchh
Confidence 4689999999999999999999999999887654 33333456789999999999999999988887765432 11111
Q ss_pred Eec-----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE---EeecCceEEEEecCCCEEEEEEc----C-
Q 002495 715 TFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFKGGTAQMRFQPHLGRYLAAAA----E- 781 (915)
Q Consensus 715 ~~~-----~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~---~~~~~~~~v~~sp~~~~ll~~~~----d- 781 (915)
... ...+....+-|-..... | -|+ .|.....+........ ....+...++|--+|.++++... +
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTq-f-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQ-F-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred ccccccccccccccceeccccccee-e-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 100 11122233444332211 1 121 2222222211111110 12345567899988888777432 3
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 857 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spd 857 (915)
..|+|||.+ +..-..-.....--.+++|-|.|.++++...+ .|.+|.-+.-........+......+..++|+.+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 789999988 43322222233445689999999999886533 6888886544444444444444556999999999
Q ss_pred CCEEEEE---EcCCeEEEEECCCCc
Q 002495 858 YPSLLVI---GCYQSLELWNMSENK 879 (915)
Q Consensus 858 g~~l~s~---s~dg~I~iwd~~~~~ 879 (915)
+..|++. .....|++|-+.+-.
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeE
Confidence 9998883 444469999887754
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-05 Score=90.62 Aligned_cols=255 Identities=14% Similarity=0.088 Sum_probs=150.4
Q ss_pred CCCCEEEEEEC-CCcEEEEECCCCceeeEecc-CCCcEEEEEE-------------------CCCCCEEEEEe-CCCeEE
Q 002495 645 SDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVRF-------------------SPSMPRLATSS-FDKTVR 702 (915)
Q Consensus 645 pdg~~Lasgs~-Dg~V~vwd~~t~~~~~~l~~-h~~~V~~l~f-------------------spdg~~Lasgs-~Dg~I~ 702 (915)
-||++|+.-.. +..|...+++..++...++. ....+..++| .+||+.+...+ ..+.|.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 37888888764 55677777776666555442 1122333333 34554443222 245566
Q ss_pred EEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEe---CCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEE
Q 002495 703 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD---GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 779 (915)
Q Consensus 703 iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s---~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~ 779 (915)
++|.++ .+....+. -......++++++++.+++++. ...++...+..+...+..|.-.. ...+.++++..++
T Consensus 219 vID~et-meV~~qV~-Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK~~~V-- 293 (635)
T PRK02888 219 AVDAET-MEVAWQVM-VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGKFKTI-- 293 (635)
T ss_pred EEECcc-ceEEEEEE-eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCCEEEE--
Confidence 777765 33333322 1224456788899888776652 23344444444333333332111 1123445665554
Q ss_pred cCCeEEEEECCC-----ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCC---------cceEEEec
Q 002495 780 AENVVSILDAET-----QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE---------GECVHELS 843 (915)
Q Consensus 780 ~dg~I~i~D~~t-----~~~~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~---------~~~i~~~~ 843 (915)
.++.|.++|.++ .+.+..+. -......|.++|||+++++++.- +|.|+|+.+... ...+.+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 467899999998 34554444 44567889999999988887764 999999987532 11233333
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------CcEE-EEcccCCCeE-----EEEEeCCCCEEEEEe
Q 002495 844 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE----------NKTM-TLTAHEGLIA-----ALAVSTETGYVASAS 906 (915)
Q Consensus 844 ~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~----------~~~~-~~~~h~~~V~-----~l~~spdg~~Lasgs 906 (915)
. +..-...+|.++|..+.+..-|..|..||+.. ..++ .+..|..+.. .=.-.+||++|++.+
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 3 33445668999999888888999999999876 2333 2333333222 222367888888864
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-05 Score=89.18 Aligned_cols=256 Identities=13% Similarity=0.115 Sum_probs=149.3
Q ss_pred CCEEEEEECCCcEEEEECCCCceeeEeccCCC------cEE--EEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEecc
Q 002495 647 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS------LIT--DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 718 (915)
Q Consensus 647 g~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~------~V~--~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~ 718 (915)
+..+++++.++.|+-+|..+++.+-.+..... .+. .+.+. ++..++.++.++.|+.+|.++ ++.+-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T-G~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET-GKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC-CCEeeeecC
Confidence 34677777889999999999988877654332 010 11111 226888888999999999998 555544443
Q ss_pred CCCC-----eE-EEEEcCCCCeEEEEEe---------CCCcEEEEEcCCCeeEEEeecCc--------------------
Q 002495 719 HSAS-----VM-SLDFHPNKDDLICSCD---------GDGEIRYWSINNGSCTRVFKGGT-------------------- 763 (915)
Q Consensus 719 h~~~-----V~-sl~fsp~~~~ll~s~s---------~Dg~I~iwdl~~~~~~~~~~~~~-------------------- 763 (915)
.... |. +..+. +..++ .++ .++.|..+|..+++.+..++...
T Consensus 139 ~~~~~~~~~i~ssP~v~--~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV--KKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEE--CCEEE-EeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 2210 11 12222 23333 333 46889999999999887765321
Q ss_pred ----eEEEEecCCCEEEEEEcCC------------------eEEEEECCCceEEEEecCCCCCe------EEEEEc----
Q 002495 764 ----AQMRFQPHLGRYLAAAAEN------------------VVSILDAETQACRLSLQGHTKPI------DSVCWD---- 811 (915)
Q Consensus 764 ----~~v~~sp~~~~ll~~~~dg------------------~I~i~D~~t~~~~~~l~~h~~~V------~si~~s---- 811 (915)
....+.+.++.+++++.++ .|.-+|.++++.+..+..-...+ ....+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 1233445567888887664 79999999999988765311111 001111
Q ss_pred CCCC---EEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 002495 812 PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI------------------GCYQS 869 (915)
Q Consensus 812 pdg~---~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~------------------s~dg~ 869 (915)
-++. ++++++.+ .+..+|.++++..-..... ...+..+| ..++++ ..++.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 1343 56667666 8999999988432222111 11122333 223332 23578
Q ss_pred EEEEECCCCcEEEEcccC---------CCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 870 LELWNMSENKTMTLTAHE---------GLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 870 I~iwd~~~~~~~~~~~h~---------~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
|.-+|+.+++.+-..... .+...-.....+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 999999999887222111 1111111122456788888899888764
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.6e-07 Score=89.67 Aligned_cols=95 Identities=20% Similarity=0.388 Sum_probs=73.9
Q ss_pred cEEEEECCCCceeeEeccCCCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEE
Q 002495 658 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 736 (915)
Q Consensus 658 ~V~vwd~~t~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll 736 (915)
..++|+++..+.+..-+...+.|++++-+|. ...+++|+.||.|-+||.++...+...++.|+.+|+.+-|+|....-|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 4556666533332222233345999999995 446778888999999999987777888899999999999999877767
Q ss_pred EEEeCCCcEEEEEcCC
Q 002495 737 CSCDGDGEIRYWSINN 752 (915)
Q Consensus 737 ~s~s~Dg~I~iwdl~~ 752 (915)
++|++||.+..||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 7999999999999775
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.5e-06 Score=95.75 Aligned_cols=181 Identities=18% Similarity=0.214 Sum_probs=127.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEE
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 714 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~ 714 (915)
.+.++|++++ +++|+.|+.+|.|++++.... . .+...|+.. ..+|+++++|+.||+|.|..+.++.. ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 5678888887 569999999999999997633 2 333345443 56899999999999999999987433 33
Q ss_pred EeccCCCCeEEEEEcCC----CCeEEEEEeCCCcEEEEEcCCC---e--eEEEeecCceEEEEecCCCEEEEEEcCCeEE
Q 002495 715 TFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNG---S--CTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 785 (915)
Q Consensus 715 ~~~~h~~~V~sl~fsp~----~~~ll~s~s~Dg~I~iwdl~~~---~--~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~ 785 (915)
.+. ...++.+|+++|+ ....+++|+.-| +.++.-+-- . ....-.|.+.++.|. +.+++-..|-.|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDGVK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCCcE
Confidence 332 4578999999998 223455888888 777653311 1 123334566666665 5688888888899
Q ss_pred EEECCCceEEEEecCCCCC------eEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 002495 786 ILDAETQACRLSLQGHTKP------IDSVCWDPSGELLASVSEDSVRVWTVGS 832 (915)
Q Consensus 786 i~D~~t~~~~~~l~~h~~~------V~si~~spdg~~Las~s~d~I~iwdl~s 832 (915)
|||+.++..+..+...... -..+.|.+ ...|+.|-.|+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~-~~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD-EDRLVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecC-CCeEEEecCCeEEEEEEec
Confidence 9999998877766543332 23467776 4567778888899998873
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.7e-06 Score=95.87 Aligned_cols=183 Identities=13% Similarity=0.132 Sum_probs=136.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEE-
Q 002495 688 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM- 766 (915)
Q Consensus 688 dg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v- 766 (915)
++..++.|+.-..+..+|+++ .+..+...-....|+-++.+ ++++++|...|+|.+-|.++.+.++++..+...+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNT-EKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeeccc-ceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 456788888888899999987 45555544444457767664 4466699999999999999999999999887665
Q ss_pred EEecCCCEEEEEEc---------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCC--CEEEEEeCCeEEEEECCCCCC
Q 002495 767 RFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG--ELLASVSEDSVRVWTVGSGSE 835 (915)
Q Consensus 767 ~~sp~~~~ll~~~~---------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg--~~Las~s~d~I~iwdl~s~~~ 835 (915)
.|+-.|+.+++++. |..|.|||+|..+.+..+.-+.++ .-+.|+|.- .++++.+.+...+-|..+..+
T Consensus 222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 58888999998876 567899999998777666555554 446777743 345555555778888433222
Q ss_pred -cceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002495 836 -GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 836 -~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~ 875 (915)
...+.-+......+..+.+++++..++.+..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2344455555677999999999999999999999999973
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-07 Score=105.47 Aligned_cols=241 Identities=13% Similarity=0.156 Sum_probs=152.3
Q ss_pred CCCCeEEEEEcCCC--CEEEEEECCCcEEEEECCCC--ceeeEeccCCCcEEEEEECC-CCCEEEEEe----CCCeEEEE
Q 002495 634 STSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSP-SMPRLATSS----FDKTVRVW 704 (915)
Q Consensus 634 H~~~V~~lafspdg--~~Lasgs~Dg~V~vwd~~t~--~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs----~Dg~I~iW 704 (915)
.+..+.|+++.-+. .++++|..+|.|.+-.+... .......+|...+++++|++ |.+.||.|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 35568888876644 48899999999999887632 22455667889999999998 556677763 26679999
Q ss_pred ECCCC----CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC-eeEEEeec-CceEEEEecCCCEEEEE
Q 002495 705 DADNP----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKG-GTAQMRFQPHLGRYLAA 778 (915)
Q Consensus 705 dl~~~----~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~-~~~~~~~~-~~~~v~~sp~~~~ll~~ 778 (915)
|+.+. .+......+......+++|..+. .++.+|.....|.++|++-. .....+.. .+..+.+.|....+++.
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 99863 11111111234556688998664 46668888889999999832 22222222 34557788877778888
Q ss_pred EcCCeEEEEEC-CCce-EEEEecCC----CCCeEEEEEcCCCC-EEEEEeCC--eEEEEECCCCC------CcceEEE--
Q 002495 779 AAENVVSILDA-ETQA-CRLSLQGH----TKPIDSVCWDPSGE-LLASVSED--SVRVWTVGSGS------EGECVHE-- 841 (915)
Q Consensus 779 ~~dg~I~i~D~-~t~~-~~~~l~~h----~~~V~si~~spdg~-~Las~s~d--~I~iwdl~s~~------~~~~i~~-- 841 (915)
..|+.|.+||. +.-+ ++..+... .+.+..++|+|... ++++...| +|++||+.... ....+..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s 293 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYES 293 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecc
Confidence 88999999993 3322 22222211 22489999999655 66777777 89999986421 1111111
Q ss_pred ---eccC--CCceEEEEEeCCC--CEEEEEEcCCeEEEEEC
Q 002495 842 ---LSCN--GNKFHSCVFHPTY--PSLLVIGCYQSLELWNM 875 (915)
Q Consensus 842 ---~~~~--~~~i~~i~~spdg--~~l~s~s~dg~I~iwd~ 875 (915)
+... ...|.+..||+.. ...+++...-.+.-|++
T Consensus 294 ~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 294 KYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred cccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 1122 2557777787755 33444444444444444
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-06 Score=64.10 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.5
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 663 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd 663 (915)
+.+.++++|.+.|++|+|+|++.+|++++.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.5e-05 Score=85.63 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=88.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeE-eccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCce
Q 002495 634 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 712 (915)
Q Consensus 634 H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~ 712 (915)
|...|.--+++..+++|+.|+.-|.|++|+-..++.... ..+..+.+..++.+++..++|.|+..|.|.|+-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344566666777889999999999999999766554333 3334556677778888888899999999999987652211
Q ss_pred ----EE-EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC
Q 002495 713 ----LR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 752 (915)
Q Consensus 713 ----~~-~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~ 752 (915)
+. .-..|...|++++|++++..++ +|+..|+|.+-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEech
Confidence 11 1123788999999999988766 999999999988877
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00065 Score=78.41 Aligned_cols=239 Identities=15% Similarity=0.135 Sum_probs=136.0
Q ss_pred eEEEEEcCCCCEEEEEE-CCC----cEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCC-----------eE
Q 002495 638 VICCHFSSDGKLLATGG-HDK----KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----------TV 701 (915)
Q Consensus 638 V~~lafspdg~~Lasgs-~Dg----~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----------~I 701 (915)
+..+++||||++||.+- ..| .|+|+|+++++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 44678999999988763 333 59999999997765432111 122399999988877665433 38
Q ss_pred EEEECCCCCce-EEEeccCCCC--eEEEEEcCCCCeEEEEEeCC---CcEEEEEcCCC-----eeEEEeec--CceEEEE
Q 002495 702 RVWDADNPGYS-LRTFMGHSAS--VMSLDFHPNKDDLICSCDGD---GEIRYWSINNG-----SCTRVFKG--GTAQMRF 768 (915)
Q Consensus 702 ~iWdl~~~~~~-~~~~~~h~~~--V~sl~fsp~~~~ll~s~s~D---g~I~iwdl~~~-----~~~~~~~~--~~~~v~~ 768 (915)
++|++.+.... ...+...... ...+..+++++.+++..... ..|++.|+..+ ........ ......
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v- 283 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV- 283 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE-
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE-
Confidence 88888774333 3344443332 67888999999888766554 45888888875 23333322 222222
Q ss_pred ecCCCEEEEEEc----CCeEEEEECCCce---EEEEecCCCCC--eEEEEEcCCCC-EEEEEeCC---eEEEEECCCCCC
Q 002495 769 QPHLGRYLAAAA----ENVVSILDAETQA---CRLSLQGHTKP--IDSVCWDPSGE-LLASVSED---SVRVWTVGSGSE 835 (915)
Q Consensus 769 sp~~~~ll~~~~----dg~I~i~D~~t~~---~~~~l~~h~~~--V~si~~spdg~-~Las~s~d---~I~iwdl~s~~~ 835 (915)
...++.+++.+. .+.|...++.... ....+..+... +..+... +. +++....+ .|++|++..+
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~-- 359 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDG-- 359 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-T--
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCC--
Confidence 222555555443 3578888888764 23345555553 5555443 44 44444444 7999999722
Q ss_pred cceEEEecc-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEE
Q 002495 836 GECVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTL 883 (915)
Q Consensus 836 ~~~i~~~~~-~~~~i~~i~~spdg~~l~s~s~d----g~I~iwd~~~~~~~~~ 883 (915)
.....+.. ..+.|..+...++.+.+...-.. ..|+.||+.+++...+
T Consensus 360 -~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 360 -KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp -EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred -cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 22222222 23345555555665544433322 4899999998886543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00016 Score=84.54 Aligned_cols=191 Identities=13% Similarity=0.157 Sum_probs=131.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCc-EEEEEECCCCCEEEEEeCCC-----eEEEEECCCC-
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFDK-----TVRVWDADNP- 709 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~-V~~l~fspdg~~Lasgs~Dg-----~I~iWdl~~~- 709 (915)
.|.| |++.+..+|.|+.+|.|.+++- ..+.++.+..+... |..+.......+|++.+.|+ .|+|||++..
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4444 5778889999999999988873 44555778877777 44444444446888887765 4899999742
Q ss_pred ----CceE---EEec----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC--C--Cee---EEEeecCceEEEEecC
Q 002495 710 ----GYSL---RTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--N--GSC---TRVFKGGTAQMRFQPH 771 (915)
Q Consensus 710 ----~~~~---~~~~----~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~--~--~~~---~~~~~~~~~~v~~sp~ 771 (915)
..++ +.+. ....++.+|+.+.+ -..+|+|-.+|.|.++.-+ . +.. ...-+..++.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 1223 2222 13467888888887 4466688889999988522 1 111 1112456788888888
Q ss_pred CCEEEEEEcCCeEEEEECCCceE-EEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002495 772 LGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 831 (915)
Q Consensus 772 ~~~ll~~~~dg~I~i~D~~t~~~-~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~ 831 (915)
+..++.+.....|.+|.+....+ ...+..|...++|..|++...-+++++...|.+||..
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd 243 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSD 243 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCC
Confidence 88766666777888888875443 4447778889999999986665777777789999986
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00012 Score=85.57 Aligned_cols=203 Identities=14% Similarity=0.264 Sum_probs=138.2
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCC-----cEEEEEcCCC-----
Q 002495 684 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNG----- 753 (915)
Q Consensus 684 ~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg-----~I~iwdl~~~----- 753 (915)
+|++.+..+|.|+.+|.|.+.+-. -..++.+..+...|...-|.-++..+|++.+.|+ .|+|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 466788899999999988877654 3445777777777444455556556666766664 4899998743
Q ss_pred -eeE---EEee-------cCceEEEEecCCCEEEEEEcCCeEEEEECC--C--ceEEEEecCCCCCeEEEEEcCCCCE-E
Q 002495 754 -SCT---RVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAE--T--QACRLSLQGHTKPIDSVCWDPSGEL-L 817 (915)
Q Consensus 754 -~~~---~~~~-------~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~--t--~~~~~~l~~h~~~V~si~~spdg~~-L 817 (915)
.|+ +.+. ....+++++.+...+++|-.+|.|.++.-. . +....-......+|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 244 2222 134668888888999999999999998432 1 1222222234678999999999986 5
Q ss_pred EEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-EEEEc-ccCCCeE
Q 002495 818 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLT-AHEGLIA 891 (915)
Q Consensus 818 as~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~-~~~~~-~h~~~V~ 891 (915)
+++....|.+|.+. ++. .....+..++..+.|..+++....|++++ +..|.+||..... +..+. +|...+.
T Consensus 188 Fv~Tt~~V~~y~l~-gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 188 FVATTEQVMLYSLS-GRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEEecceeEEEEec-CCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEE
Confidence 56666689999997 332 44556778888888888887766455544 4679999987644 33555 5554433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-05 Score=92.16 Aligned_cols=109 Identities=16% Similarity=0.227 Sum_probs=85.1
Q ss_pred EEEEEcCCCCEEEEEEC----CCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEE
Q 002495 639 ICCHFSSDGKLLATGGH----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 714 (915)
Q Consensus 639 ~~lafspdg~~Lasgs~----Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~ 714 (915)
+-+.|+|...+||+++. .|.|.||- ++|++-+.... .-.++++||+|..-.|+.|=.-|.+.+|...+ .+...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCC-ceeee
Confidence 34578998889988873 57888884 56654443321 12356799999988889998899999999887 55555
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002495 715 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 751 (915)
Q Consensus 715 ~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~ 751 (915)
....|..+|..+.|+++|+.++ ++..-|.|.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEee
Confidence 6667999999999999988665 99999999999876
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-06 Score=90.76 Aligned_cols=159 Identities=12% Similarity=0.134 Sum_probs=118.9
Q ss_pred EEEeCCCcEEEEEcCCCeeEEE-eecCceEEEEecCCCEEEEEEcCCeEEEEECCCc-----eEEEEecCCCCCeEEEEE
Q 002495 737 CSCDGDGEIRYWSINNGSCTRV-FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCW 810 (915)
Q Consensus 737 ~s~s~Dg~I~iwdl~~~~~~~~-~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~-----~~~~~l~~h~~~V~si~~ 810 (915)
++.+.+-.|-+-|++++.--.. -+..+....|.-.++.++.|+..|.|..+|++.+ .+...+ -|...|+++..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhh
Confidence 4666788899999988753322 2345566778888899999999999999999975 333333 48999999987
Q ss_pred cC-CCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEE--EEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-
Q 002495 811 DP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC--VFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA- 885 (915)
Q Consensus 811 sp-dg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i--~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~- 885 (915)
.. ++.+|.+.+.+ +|++||++..+..+.+..+.+|-+...-+ .+++....|++++.|-..+||.++.+.++....
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 76 67777777777 99999998876556688888887654443 456677889999999999999999999884332
Q ss_pred ----cCCCeEEEEEe
Q 002495 886 ----HEGLIAALAVS 896 (915)
Q Consensus 886 ----h~~~V~~l~~s 896 (915)
.+..+.+++|.
T Consensus 387 ~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 387 PYSASEVDIPSVAFD 401 (425)
T ss_pred CCccccccccceehh
Confidence 33345566664
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0012 Score=71.50 Aligned_cols=255 Identities=11% Similarity=0.110 Sum_probs=153.9
Q ss_pred CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEe----------CCCeEEEEECCCCCceEEEeccC---C---
Q 002495 657 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNPGYSLRTFMGH---S--- 720 (915)
Q Consensus 657 g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~iWdl~~~~~~~~~~~~h---~--- 720 (915)
+.|+|+|.++++.+-.+..-- .-.+..+|+++.+++++ ..-.|.+||..+ -.....+.-. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-L~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-LSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-TEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-CcccceEecCCcchhee
Confidence 479999999998877776422 33466789999988764 234589999987 3333222211 1
Q ss_pred -CCeEEEEEcCCCCeEEEE-EeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECC-CceEEEE
Q 002495 721 -ASVMSLDFHPNKDDLICS-CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLS 797 (915)
Q Consensus 721 -~~V~sl~fsp~~~~ll~s-~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~-t~~~~~~ 797 (915)
.....+.++.+++++++. .+---.|.|.|+...+.+..+....+...+-.....|.+.|.||.+..+.+. .|+...+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 122335677777766532 2334568888999999888887655554443344678899999999888877 4444322
Q ss_pred e----cCCCCC-eEEEEEcCCCC-EEEEEeCCeEEEEECCCCCCcceEEEeccC------C----CceEEEEEeCCCCEE
Q 002495 798 L----QGHTKP-IDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN------G----NKFHSCVFHPTYPSL 861 (915)
Q Consensus 798 l----~~h~~~-V~si~~spdg~-~Las~s~d~I~iwdl~s~~~~~~i~~~~~~------~----~~i~~i~~spdg~~l 861 (915)
. ....++ +..-++...+. ++...-.+.|+-.|+.... ......+..- . +...-+++++....|
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 1 112222 22334444444 4444444478887776542 2222222210 1 123346788777666
Q ss_pred EEEEcC--------C--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCC-EEEEEe-cCCcEEEcC
Q 002495 862 LVIGCY--------Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 915 (915)
Q Consensus 862 ~s~s~d--------g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~Lasgs-~Dg~I~IWd 915 (915)
++.-.. + .|.+||+.+++.+....-...+.+|.++.+.+ +|++.+ .++.|.|||
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 665322 1 68889999999985555455688999998776 665544 578999986
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0012 Score=75.23 Aligned_cols=252 Identities=15% Similarity=0.132 Sum_probs=166.8
Q ss_pred EEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEE
Q 002495 659 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 737 (915)
Q Consensus 659 V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~ 737 (915)
+.+++..+......+..+. ....+.+.+++..++.... ...+.+.+... .............-.++++++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 5555555554444444333 5667788888865555433 22455554442 2211111111134457888999888888
Q ss_pred EEeCCCcEEEEEcCCCeeEEEeec--CceEEEEecCCCEEEEEEc---CCeEEEEECCCceEEEEecCCCCCeEEEEEcC
Q 002495 738 SCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDP 812 (915)
Q Consensus 738 s~s~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~---dg~I~i~D~~t~~~~~~l~~h~~~V~si~~sp 812 (915)
+...++.|.+.|..+.+++..... ....+.++++++.++++.. ++.+.+.|..+.+...+...-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888889999999888887776643 4567899999988888776 689999999999888876554445 8899999
Q ss_pred CCCEEEEEeCC--eEEEEECCCCCCcc-eEEEeccCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEEc-c
Q 002495 813 SGELLASVSED--SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLT-A 885 (915)
Q Consensus 813 dg~~Las~s~d--~I~iwdl~s~~~~~-~i~~~~~~~~~i~~i~~spdg~~l~s~s~d---g~I~iwd~~~~~~~~~~-~ 885 (915)
+|..++.+..+ .|.++|........ .......-...-..+.+.+++.++++.... +.+.+.|..++...... .
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 99977776633 89999976542211 000011223445678899999977776655 48999999998887432 1
Q ss_pred cCC-CeEEEEEeCCCCEEEEEecC-CcEEE
Q 002495 886 HEG-LIAALAVSTETGYVASASHD-KFVKL 913 (915)
Q Consensus 886 h~~-~V~~l~~spdg~~Lasgs~D-g~I~I 913 (915)
-.. ....+.++|+|+++.+.... +.|.+
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 111 56778899999988777433 44443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.7e-06 Score=62.34 Aligned_cols=39 Identities=41% Similarity=0.557 Sum_probs=36.9
Q ss_pred CceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 002495 667 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 667 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWd 705 (915)
++++.++.+|...|++|+|+|++.+|++++.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00027 Score=75.60 Aligned_cols=191 Identities=13% Similarity=0.159 Sum_probs=135.7
Q ss_pred CeEEEEEcCCCCeEEEEEeCCCc-EEEEEcCCCeeEEEeecCc-----eEEEEecCCCEEEEEEc-----CCeEEEEECC
Q 002495 722 SVMSLDFHPNKDDLICSCDGDGE-IRYWSINNGSCTRVFKGGT-----AQMRFQPHLGRYLAAAA-----ENVVSILDAE 790 (915)
Q Consensus 722 ~V~sl~fsp~~~~ll~s~s~Dg~-I~iwdl~~~~~~~~~~~~~-----~~v~~sp~~~~ll~~~~-----dg~I~i~D~~ 790 (915)
....++.+|.....++.+-.-|+ ..+||..+++....+.... ...+|++++.+|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 44568889977777777777665 6789999999887765432 23679999999998765 4799999999
Q ss_pred -CceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------------------eEEEEECCCCCCcceEEE--e--ccCC
Q 002495 791 -TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------------------SVRVWTVGSGSEGECVHE--L--SCNG 846 (915)
Q Consensus 791 -t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-------------------~I~iwdl~s~~~~~~i~~--~--~~~~ 846 (915)
+.+.+.++..|.-.-..+.+.|||+.|+++..+ .+.+.|..++ ..+.. + ..|.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLHQ 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCccccc
Confidence 668888888887777889999999877766432 2444555555 33333 3 3466
Q ss_pred CceEEEEEeCCCCEEEEEEcCC-------eEEEEECCCCc-EEE-----EcccCCCeEEEEEeCCCCEEEE-EecCCcEE
Q 002495 847 NKFHSCVFHPTYPSLLVIGCYQ-------SLELWNMSENK-TMT-----LTAHEGLIAALAVSTETGYVAS-ASHDKFVK 912 (915)
Q Consensus 847 ~~i~~i~~spdg~~l~s~s~dg-------~I~iwd~~~~~-~~~-----~~~h~~~V~~l~~spdg~~Las-gs~Dg~I~ 912 (915)
..|..+++.++|..++..-..+ .|.+++....- .+. ...-.+.|-+|+++.++.+|++ +-.-+++.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 7899999999998766665443 35555544421 111 1234578999999999987754 44678899
Q ss_pred EcC
Q 002495 913 LWK 915 (915)
Q Consensus 913 IWd 915 (915)
+||
T Consensus 243 ~~d 245 (305)
T PF07433_consen 243 VWD 245 (305)
T ss_pred EEE
Confidence 995
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0012 Score=75.29 Aligned_cols=90 Identities=12% Similarity=0.101 Sum_probs=70.9
Q ss_pred eEEEEECCCCCCcceEEEe-ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEE
Q 002495 824 SVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYV 902 (915)
Q Consensus 824 ~I~iwdl~s~~~~~~i~~~-~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~L 902 (915)
..++|++...+ ..++... -.....+.+++++|+...++.|+.||+|.+||...+... .....-.++.++|+|+|.+|
T Consensus 237 d~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEE
Confidence 35677776442 2333222 234678999999999999999999999999999877544 33455678899999999999
Q ss_pred EEEecCCcEEEcC
Q 002495 903 ASASHDKFVKLWK 915 (915)
Q Consensus 903 asgs~Dg~I~IWd 915 (915)
++|+.-|.|.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999997
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-06 Score=57.96 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcC
Q 002495 10 KMLDVYIHDYLVKRDLKASAQAFQAEG 36 (915)
Q Consensus 10 ~~l~~yiydyl~~~~~~~~a~a~~~e~ 36 (915)
+.||.+|||||+++|+.++|++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999884
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00089 Score=78.83 Aligned_cols=234 Identities=13% Similarity=0.134 Sum_probs=132.8
Q ss_pred CEEEEEECCCcEEEEECCCCceeeEeccCCCc--EEEEEECC--CCCEEEEEe---------CCCeEEEEECCCCCceEE
Q 002495 648 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--ITDVRFSP--SMPRLATSS---------FDKTVRVWDADNPGYSLR 714 (915)
Q Consensus 648 ~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~--V~~l~fsp--dg~~Lasgs---------~Dg~I~iWdl~~~~~~~~ 714 (915)
..++.++.++.|+-+|.++++.+..+...... -..+.-+| .+..++.++ .++.|..+|..+ ++.+-
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T-G~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET-GKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC-Cceee
Confidence 57778888999999999999998877644321 00111111 124555554 367899999988 44444
Q ss_pred EeccCCC--------------------CeE-EEEEcCCCCeEEEEEeCCC------------------cEEEEEcCCCee
Q 002495 715 TFMGHSA--------------------SVM-SLDFHPNKDDLICSCDGDG------------------EIRYWSINNGSC 755 (915)
Q Consensus 715 ~~~~h~~--------------------~V~-sl~fsp~~~~ll~s~s~Dg------------------~I~iwdl~~~~~ 755 (915)
.+..... .|. ..++.+.++.++ .++.++ .|.-+|+++++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~-vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVY-VGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEE-EECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 3332111 111 233333344444 555444 799999999999
Q ss_pred EEEeecCce---------EEEEe----cCCC---EEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEE
Q 002495 756 TRVFKGGTA---------QMRFQ----PHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLAS 819 (915)
Q Consensus 756 ~~~~~~~~~---------~v~~s----p~~~---~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las 819 (915)
+..+..... ...+. -++. .+++++.+|.++.+|.++++.+...... ...+..+| +.+++.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~ 344 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLG 344 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEc
Confidence 888753211 01111 1222 4677778999999999999988765421 11123333 222221
Q ss_pred E-----------------eCC-eEEEEECCCCCCcceEEEeccCC--------CceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002495 820 V-----------------SED-SVRVWTVGSGSEGECVHELSCNG--------NKFHSCVFHPTYPSLLVIGCYQSLELW 873 (915)
Q Consensus 820 ~-----------------s~d-~I~iwdl~s~~~~~~i~~~~~~~--------~~i~~i~~spdg~~l~s~s~dg~I~iw 873 (915)
. ..+ .|.-+|+.+++ .+....... .........-.+..|++++.|+.|+.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 345 AFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred cccccccCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 1 112 67777777763 222222110 111111112255678899999999999
Q ss_pred ECCCCcEEEEcccCCCe
Q 002495 874 NMSENKTMTLTAHEGLI 890 (915)
Q Consensus 874 d~~~~~~~~~~~h~~~V 890 (915)
|..+++.+......+.+
T Consensus 422 d~~tG~~lW~~~~~~~~ 438 (488)
T cd00216 422 DATTGKELWKFRTPSGI 438 (488)
T ss_pred ECCCCceeeEEECCCCc
Confidence 99999988333333333
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.3e-05 Score=85.90 Aligned_cols=184 Identities=17% Similarity=0.228 Sum_probs=125.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE
Q 002495 677 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 756 (915)
Q Consensus 677 ~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~ 756 (915)
.+.++|++++ ++.|+.|..+|.|++++... .. ++...|+.. ..+|. ++++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC--cc-ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 3456777775 56899999999999999874 22 444445544 33444 6679999999999998887654
Q ss_pred E--EeecCceEEEEecC-----CCEEEEEEcCCeEEEEECCCc--eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEE
Q 002495 757 R--VFKGGTAQMRFQPH-----LGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV 827 (915)
Q Consensus 757 ~--~~~~~~~~v~~sp~-----~~~ll~~~~dg~I~i~D~~t~--~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~i 827 (915)
. .|+.....++++|+ .+.+++|+.-| +.++.-+-. +.-..+....++|.+|+|. |++||-++++.|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 4 56678899999998 36788888888 777654321 1112345567899999998 88999999889999
Q ss_pred EECCCCCCcceEEEecc---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002495 828 WTVGSGSEGECVHELSC---NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 828 wdl~s~~~~~~i~~~~~---~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~ 877 (915)
||+.++.....+..-.. .......+.|.++. .++.|...+|+|..++.
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIGWGDSVKICSIKK 234 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCC--eEEEecCCeEEEEEEec
Confidence 99987633222211110 01122345666554 34556667888888773
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0002 Score=81.83 Aligned_cols=190 Identities=13% Similarity=0.232 Sum_probs=123.3
Q ss_pred CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCC---CcEEEEEcCCCeeEE--EeecCceEEEEecCCCEEEEEEc-CC-
Q 002495 710 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTR--VFKGGTAQMRFQPHLGRYLAAAA-EN- 782 (915)
Q Consensus 710 ~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~D---g~I~iwdl~~~~~~~--~~~~~~~~v~~sp~~~~ll~~~~-dg- 782 (915)
+.....+..-...+..-+|++++..+.+..-.. ..|+++|+++++... .+.+......|+|++.+++.+.. |+
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 444555555566777788999988766553333 359999999886544 45566777899999988887765 44
Q ss_pred -eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002495 783 -VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 857 (915)
Q Consensus 783 -~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spd 857 (915)
.|+++|+..+.... +....+.-+.-.|+|||++|+..++. .|.++++..... ..+......-..-.|+||
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~Spd 336 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPD 336 (425)
T ss_pred ccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCC
Confidence 67788988876433 44333334466899999988877765 577777765432 222222333336789999
Q ss_pred CCEEEEEEcC-C--eEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 002495 858 YPSLLVIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 904 (915)
Q Consensus 858 g~~l~s~s~d-g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Las 904 (915)
|++|+..+.. | .|.++|+.++..+....+......-+|.++++.|+.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 9999988854 3 477778776664433333333444455555554443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00027 Score=85.63 Aligned_cols=226 Identities=13% Similarity=0.169 Sum_probs=132.8
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE
Q 002495 677 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 756 (915)
Q Consensus 677 ~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~ 756 (915)
.+.|.++.|.-+..-|+.+..+|.|.+-|..+. .+.........|.+++|+||...+. ..+.+.+|.+-+- +...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~-liT~~~tll~mT~-~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLA-LITGRQTLLFMTK-DFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEE-EEeCCcEEEEEec-cccch
Confidence 468999999999999999999999999988762 3334444567899999999977544 5555566655322 11111
Q ss_pred EEeecCceEEEEecCCCEEEEEEcCC----------eEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEE-----e
Q 002495 757 RVFKGGTAQMRFQPHLGRYLAAAAEN----------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-----S 821 (915)
Q Consensus 757 ~~~~~~~~~v~~sp~~~~ll~~~~dg----------~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~-----s 821 (915)
....-.. .-.+ .+.++.++... .....+....+.......-.+.=++|+|--||+++++. .
T Consensus 144 ~E~~L~~---d~~~-~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 144 AEKPLDA---DDER-KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred hcccccc---cccc-ccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 1110000 0000 01122222211 11111111110000000011223468999999999883 3
Q ss_pred C-CeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCcEE----EEcccCCCeEEE
Q 002495 822 E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM----TLTAHEGLIAAL 893 (915)
Q Consensus 822 ~-d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~---dg~I~iwd~~~~~~~----~~~~h~~~V~~l 893 (915)
. ..|+|||-+ + ..-..-....+.-.+++|-|.|..+++... |+.|.+|.-+..+.- .+......|..+
T Consensus 220 ~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred CceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 3 279999976 2 111111122445578899999999988754 457999986654322 333444559999
Q ss_pred EEeCCCCEEEE---EecCCcEEEc
Q 002495 894 AVSTETGYVAS---ASHDKFVKLW 914 (915)
Q Consensus 894 ~~spdg~~Las---gs~Dg~I~IW 914 (915)
+|+.++.+||+ ......|++|
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eecCCCCceeeeecccccceEEEE
Confidence 99999999887 4444459998
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0028 Score=68.79 Aligned_cols=237 Identities=14% Similarity=0.157 Sum_probs=143.7
Q ss_pred EEEEEcCCCCEEEEEE----------CCCcEEEEECCCCceeeEeccCCC-------cEEEEEECCCCCEEEEEeC--CC
Q 002495 639 ICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPSMPRLATSSF--DK 699 (915)
Q Consensus 639 ~~lafspdg~~Lasgs----------~Dg~V~vwd~~t~~~~~~l~~h~~-------~V~~l~fspdg~~Lasgs~--Dg 699 (915)
-.+..+||++.+++++ .+-.|.+||..+......+.-..+ ....+.++.|++++++... --
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3466899999888764 234799999999887776553322 1234577888888877754 45
Q ss_pred eEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC-CCeeEEEe----ecCc----eEEEEec
Q 002495 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVF----KGGT----AQMRFQP 770 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~-~~~~~~~~----~~~~----~~v~~sp 770 (915)
.|.|.|+.. ++.+..+.- .+ | ....|.++.-|.+-|.||.+....+. .|+..... .... ..-.+..
T Consensus 119 SVtVVDl~~-~kvv~ei~~-PG-C--~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 119 SVTVVDLAA-KKVVGEIDT-PG-C--WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp EEEEEETTT-TEEEEEEEG-TS-E--EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred eEEEEECCC-CceeeeecC-CC-E--EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 688889887 555554442 22 2 22223333335577779999999887 45544222 1111 1223445
Q ss_pred CCCEEEEEEcCCeEEEEECCCceEEE--EecCC----------CCCeEEEEEcCCCCEEEEEe--------CC---eEEE
Q 002495 771 HLGRYLAAAAENVVSILDAETQACRL--SLQGH----------TKPIDSVCWDPSGELLASVS--------ED---SVRV 827 (915)
Q Consensus 771 ~~~~ll~~~~dg~I~i~D~~t~~~~~--~l~~h----------~~~V~si~~spdg~~Las~s--------~d---~I~i 827 (915)
.++.++..+.+|.|+-.|+....... .+..- .+...-+++++....|++.- .+ .|-+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 66778888999999999987664322 22111 12233477877555444321 12 4777
Q ss_pred EECCCCCCcceEEEeccCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEEc
Q 002495 828 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSENKTMTLT 884 (915)
Q Consensus 828 wdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~-~l~s~s-~dg~I~iwd~~~~~~~~~~ 884 (915)
||+.++ +.+..+.. +..+.++.++-+.+ +|++.+ .++.|.+||..+++.+...
T Consensus 274 ~D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 274 YDLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 888776 55555554 34577888888765 565554 4689999999999988443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00076 Score=77.38 Aligned_cols=220 Identities=12% Similarity=0.136 Sum_probs=116.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEE-ECCCCCc
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW-DADNPGY 711 (915)
Q Consensus 633 ~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iW-dl~~~~~ 711 (915)
...-....+.++|+|++++++ .||...||.....+.... +.....+|...+ .+|+-...++|.|+ ++++ .
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~--~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN--E 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE---
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcc--c
Confidence 344458899999999999984 588888888544443332 334567898844 57777768889996 4433 1
Q ss_pred eEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC-ceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002495 712 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILDAE 790 (915)
Q Consensus 712 ~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~-~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 790 (915)
..+.+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.++.+... +..+.|++++..++..+.+ .++|++..
T Consensus 101 ~~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 101 VVKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp TT------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred cceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 1122221 123444433 44 443444 458999999999999999876 4889999998877777654 56665543
Q ss_pred Cc-----------eEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC
Q 002495 791 TQ-----------ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 859 (915)
Q Consensus 791 t~-----------~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~ 859 (915)
.. .....+......|.+.+|..+ .++-.+...|+. +..| +...+..+ ..++.-+.+.+..+
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~G-e~~~i~~l---d~~~yllgy~~~~~ 245 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVNG-ETGIIAHL---DKPLYLLGYLPKEN 245 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EETT-EEEEEEE----SS--EEEEEETTTT
T ss_pred chhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEcC-CcceEEEc---CCceEEEEEEccCC
Confidence 22 012222222467999999966 444444446666 3333 12223332 45666667777777
Q ss_pred EEEEEEcCCeEEEEECC
Q 002495 860 SLLVIGCYQSLELWNMS 876 (915)
Q Consensus 860 ~l~s~s~dg~I~iwd~~ 876 (915)
.++....|+.|..+.+.
T Consensus 246 ~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 246 RLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEE-TT--EEEEE--
T ss_pred EEEEEECCCCEEEEEEC
Confidence 78877777777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0029 Score=64.74 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=91.6
Q ss_pred CCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEE-
Q 002495 647 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS- 725 (915)
Q Consensus 647 g~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~s- 725 (915)
..+++.|+..+.+.-.|..+++.+..-.. ...|.+-+.- -|+.++.|++.|.+++.++.+ +..+..+... +.|.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~-~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVIL-ETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecc-hhheeeeeeh-hhhccc
Confidence 35777788888888888888776654321 1222222221 466899999999999999998 4334333322 22222
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCc---eEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 002495 726 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQ 792 (915)
Q Consensus 726 l~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~---~~v~~sp~~~~ll~~~~dg~I~i~D~~t~ 792 (915)
....+++ .+|..++.|++.+..|.++..++...+.+. ..-++.+-.+.++++...|.|.-...++.
T Consensus 99 a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 99 AQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eEEcCCC-ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 2223443 477799999999999999999998876432 23446665677777777776665555544
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00077 Score=78.46 Aligned_cols=181 Identities=8% Similarity=-0.041 Sum_probs=113.7
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--cCceEEEEecCCCEEEEEEc----CCeEEEEECCCceEEEEecCCC
Q 002495 729 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHT 802 (915)
Q Consensus 729 sp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~----dg~I~i~D~~t~~~~~~l~~h~ 802 (915)
.++|..+..+.-..+.+.++|.++.+....+. +....+.++++++++++++. ..++...+..+...+..+...
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~- 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA- 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH-
Confidence 44554444444445677788888777666543 23355788999998888863 234555554443322222211
Q ss_pred CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC--CcceEEEeccCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCc
Q 002495 803 KPIDSVCWDPSGELLASVSEDSVRVWTVGSGS--EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENK 879 (915)
Q Consensus 803 ~~V~si~~spdg~~Las~s~d~I~iwdl~s~~--~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~-dg~I~iwd~~~~~ 879 (915)
.+. ++.++|++... ..+.|.++|.++.. ....+..+. -....+.|.++|||+++++++. +..|.|+|+.+.+
T Consensus 280 -~ie--a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 280 -RIE--EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred -HHH--HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 011 34457887665 33489999998710 112333333 3677889999999999888876 6799999998855
Q ss_pred E------------EEEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 880 T------------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 880 ~------------~~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
. +.-..-.-.-...+|+.+|....|---|..|..||
T Consensus 355 ~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 355 DLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 3 21111223344668899998888888899999896
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0011 Score=75.40 Aligned_cols=219 Identities=15% Similarity=0.097 Sum_probs=150.2
Q ss_pred CCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeC---CCeEEEEECCCCCc
Q 002495 636 SKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGY 711 (915)
Q Consensus 636 ~~V~~lafspdg~~L-asgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~iWdl~~~~~ 711 (915)
..-.+++++++++.+ ++...++.|.+.|..+.+.......-. .-..++|+++++.++++.. +++|.+.|..+ ..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-Ce
Confidence 345578888888744 444456899999987776666554332 6778999999988877765 68888888887 44
Q ss_pred eEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE-E----e--ecCceEEEEecCCCEEEEEEcC---
Q 002495 712 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-V----F--KGGTAQMRFQPHLGRYLAAAAE--- 781 (915)
Q Consensus 712 ~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~-~----~--~~~~~~v~~sp~~~~ll~~~~d--- 781 (915)
.+.+...-..+ ..+++.|++..++++-..++.|.+.|.......+ . . ......+.+.+++.++++....
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 44443332233 8899999999888777789999999988776664 1 1 1234568899999977777664
Q ss_pred CeEEEEECCCceEEEEecCCCC-CeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEeccCCCceEEEEEeCC
Q 002495 782 NVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 857 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~-~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spd 857 (915)
+.+.+.|..++........-.. ....+.++|+|+++.+.... .+.+.|..+......+.........+..+++.+.
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 5999999999877765222222 45678999999988777444 8888888765333333332222333555555544
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00046 Score=78.92 Aligned_cols=194 Identities=18% Similarity=0.228 Sum_probs=123.4
Q ss_pred CceeeEeccCCCcEEEEEECCCCCEEEEEeC---C-CeEEEEECCCCCce-EEEeccCCCCeEEEEEcCCCCeEEEEEeC
Q 002495 667 LKSKTNLEEHSSLITDVRFSPSMPRLATSSF---D-KTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDG 741 (915)
Q Consensus 667 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---D-g~I~iWdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~s~s~ 741 (915)
+.....+..-...+..-+|++++..++..+. . ..|+++|+++.... +..+.++. ...+|+|||..++++...
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~r 258 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSR 258 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECC
Confidence 4455555555667788899999987665532 2 45899999874332 23334443 347899999999988888
Q ss_pred CCc--EEEEEcCCCeeEEEe--ecCceEEEEecCCCEEEEEEcC-C--eEEEEECCCceEEEEecCCCCCeEEEEEcCCC
Q 002495 742 DGE--IRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSG 814 (915)
Q Consensus 742 Dg~--I~iwdl~~~~~~~~~--~~~~~~v~~sp~~~~ll~~~~d-g--~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg 814 (915)
||. |+++|+..+...+.. .+....-.|+|+|..++.++.. | .|.++|.+......... ....-..-.|+|||
T Consensus 259 dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~~p~~SpdG 337 (425)
T COG0823 259 DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNSNPVWSPDG 337 (425)
T ss_pred CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCcCccCCCCC
Confidence 876 555677766643311 2233456799999998888763 3 67777887765433222 22222277899999
Q ss_pred CEEEEEeC--C--eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002495 815 ELLASVSE--D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 868 (915)
Q Consensus 815 ~~Las~s~--d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg 868 (915)
++|+..+. + .|.++|+.++.. +..+ ........-.|.++++.++..+..+
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 99888773 3 477777776643 2211 1133334456777887776665443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0011 Score=69.86 Aligned_cols=197 Identities=16% Similarity=0.231 Sum_probs=111.3
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----cCceEEEEecCCCEEEEEEcCCeEEEEECC
Q 002495 715 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAE 790 (915)
Q Consensus 715 ~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~----~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~ 790 (915)
.+.+-...+..|+|.|+.+.++++....+.|..++.. |+.++.+. +....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445566799999999999999999999999999974 77777764 245678886555444433348899998873
Q ss_pred Cc------eEEEEec-----CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCC--CCCcceEEE------eccCCCceE
Q 002495 791 TQ------ACRLSLQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS--GSEGECVHE------LSCNGNKFH 850 (915)
Q Consensus 791 t~------~~~~~l~-----~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s--~~~~~~i~~------~~~~~~~i~ 850 (915)
.. .....+. .+...+..++|++.++.|+.+.+. -..||.+.. ......+.. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 32 1111111 244568999999987766666666 666776654 111111111 112344578
Q ss_pred EEEEeCCCCEEEEEE-cCCeEEEEECCCCcEE---EEcc--c-----CCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 851 SCVFHPTYPSLLVIG-CYQSLELWNMSENKTM---TLTA--H-----EGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 851 ~i~~spdg~~l~s~s-~dg~I~iwd~~~~~~~---~~~~--h-----~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
.+.++|....|++-+ .+..|.++| ..++.+ .+.. | -..--.|+|.++|.+.++ ++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 899999876655555 456889999 556555 2222 1 124679999999965554 566666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0013 Score=74.23 Aligned_cols=227 Identities=18% Similarity=0.195 Sum_probs=130.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEec-cC----------------CCcEEEEEECCCCCEEEEEeC
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EH----------------SSLITDVRFSPSMPRLATSSF 697 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~-~h----------------~~~V~~l~fspdg~~Lasgs~ 697 (915)
...+....|||+|+.||... ++.|.+++..++....... +. -+.-..+.|+||+++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 66789999999999999886 6899999987664432221 20 122356889999999988754
Q ss_pred C-Ce-----------------------------------EEEEECCCCCce-EEEe---ccCCCCeEEEEEcCCCCeEEE
Q 002495 698 D-KT-----------------------------------VRVWDADNPGYS-LRTF---MGHSASVMSLDFHPNKDDLIC 737 (915)
Q Consensus 698 D-g~-----------------------------------I~iWdl~~~~~~-~~~~---~~h~~~V~sl~fsp~~~~ll~ 737 (915)
| .. +.|+|+.++... +... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 21 333444432211 1111 123445778889888773443
Q ss_pred -EEeCC---CcEEEEEcCCCeeEEEeec-------CceEEEEe-cCCCEEEEEE-cCC--eEEEEECCCceEEEEecCCC
Q 002495 738 -SCDGD---GEIRYWSINNGSCTRVFKG-------GTAQMRFQ-PHLGRYLAAA-AEN--VVSILDAETQACRLSLQGHT 802 (915)
Q Consensus 738 -s~s~D---g~I~iwdl~~~~~~~~~~~-------~~~~v~~s-p~~~~ll~~~-~dg--~I~i~D~~t~~~~~~l~~h~ 802 (915)
....+ ..|.++|..++.+...+.. ......+. +++..++..+ .+| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 33333 3466778877765444321 12345554 6666555544 455 6677787777644 455445
Q ss_pred CCeEE-EEEcCCCCEEE-EEeCC-----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc
Q 002495 803 KPIDS-VCWDPSGELLA-SVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 866 (915)
Q Consensus 803 ~~V~s-i~~spdg~~La-s~s~d-----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~ 866 (915)
-.|.. +.|+++++.|+ ++..+ .|+..++..+ ..+..+.+.......+.|+|++++++..+.
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 55644 67888877554 44432 4555555512 344455544444478999999998887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0016 Score=73.80 Aligned_cols=258 Identities=13% Similarity=0.103 Sum_probs=134.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC---C----
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---P---- 709 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~---~---- 709 (915)
.|+++.|.++..-|++|...|.|.||.+...+... ......-....|.+ + ...++.-.|-|+.. +
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~----~--~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR----F--SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc----c--cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999876433221 00001111111111 0 00011222333322 1
Q ss_pred -CceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee--c---------CceEEEEec-----CC
Q 002495 710 -GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--G---------GTAQMRFQP-----HL 772 (915)
Q Consensus 710 -~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~--~---------~~~~v~~sp-----~~ 772 (915)
-.+...+....+.|++++.+.-| +++.|..+|.|.|.|+|....+..-. . .+.++.|.. ++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 12334455567999999998554 78899999999999998877765521 1 233455542 22
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-ce----EEEEecCCCCCeEEEE-EcCC---------------------CCEEEEE
Q 002495 773 ---GRYLAAAAENVVSILDAE--T-QA----CRLSLQGHTKPIDSVC-WDPS---------------------GELLASV 820 (915)
Q Consensus 773 ---~~ll~~~~dg~I~i~D~~--t-~~----~~~~l~~h~~~V~si~-~spd---------------------g~~Las~ 820 (915)
-.+++|...|.+.+|.+. . +. .......+.++|..|. |+.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 367888889999999764 1 21 1222224566666665 3221 1267777
Q ss_pred eCCeEEEEECCCCCCcceEEEeccCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc----cCCCe
Q 002495 821 SEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF-----HPTYPSLLVIGCYQSLELWNMSENKTM-TLTA----HEGLI 890 (915)
Q Consensus 821 s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~-----spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~----h~~~V 890 (915)
+...++|+...+. +..+...........+.+ ...+..|++...+|.|++|.+..-+.+ .+.- +...+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 7779999998765 333333322223334444 235677888899999999999998777 2222 12234
Q ss_pred EEEEEeCCCCEEEEEec
Q 002495 891 AALAVSTETGYVASASH 907 (915)
Q Consensus 891 ~~l~~spdg~~Lasgs~ 907 (915)
...+|+++|.+++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 56677888887766554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0048 Score=65.17 Aligned_cols=198 Identities=14% Similarity=0.178 Sum_probs=114.2
Q ss_pred eeEeecCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCceeeEeccC-CCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 002495 628 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 628 ~~~l~~H~~~V~~lafspdg~-~Lasgs~Dg~V~vwd~~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~I~iWd 705 (915)
...+.+-.+.|..|+|+|+.+ ++|+....+.|..++. +++.++.+.-. .+..-+|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 345666666799999999765 5556666778888886 47777776543 35688999988887777666699999999
Q ss_pred CCCCCce--E---EEec-----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC---CeeEEE-----------eec
Q 002495 706 ADNPGYS--L---RTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRV-----------FKG 761 (915)
Q Consensus 706 l~~~~~~--~---~~~~-----~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~---~~~~~~-----------~~~ 761 (915)
+...... . ..+. .+...+..|+|.+.++.++++. +..-..||.+.. ...+.. +..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceec
Confidence 8542221 1 1111 2445689999999988888654 455556666553 211111 112
Q ss_pred CceEEEEecCCCEEEEEEc-CCeEEEEECCCceEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEE
Q 002495 762 GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSEDSVRVW 828 (915)
Q Consensus 762 ~~~~v~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~si~~spdg~~Las~s~d~I~iw 828 (915)
....+.++|..+.+++-+. ...|.++| .+++.+..+.-.. ..-..|+|+++|++.++.-.+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 4567889999888777766 56788888 6666555443222 24678999999987766644444444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0058 Score=66.19 Aligned_cols=222 Identities=16% Similarity=0.186 Sum_probs=123.9
Q ss_pred CCCCEEEEEECCCcEEEEECC-CCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEE--------
Q 002495 645 SDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-------- 715 (915)
Q Consensus 645 pdg~~Lasgs~Dg~V~vwd~~-t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~-------- 715 (915)
..++.|+.|+.+| |++|++. ..+...... ...|..+...++-+.|++-+ |+.|+++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4577999999888 9999983 333333332 22399999999877777665 599999998752211100
Q ss_pred -----eccCCCCeEEEE--EcCCCCeEEEEEeCCCcEEEEEcCCC-----eeEEEee--cCceEEEEecCCCEEEEEEcC
Q 002495 716 -----FMGHSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFK--GGTAQMRFQPHLGRYLAAAAE 781 (915)
Q Consensus 716 -----~~~h~~~V~sl~--fsp~~~~ll~s~s~Dg~I~iwdl~~~-----~~~~~~~--~~~~~v~~sp~~~~ll~~~~d 781 (915)
.......+..++ -...+...++ +.....|.+|.+... +..+.+. .....+.|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111223344444 1123344443 334558888887653 3444443 455666776 45555555 5
Q ss_pred CeEEEEECCCceEEEEecCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCce
Q 002495 782 NVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKF 849 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h------------~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i 849 (915)
+...++|+.++.....+... ..++..+.. +++++|++. ++.-.+.|. .|.... ...+.- ....
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-~~~g~fv~~-~G~~~r-~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-DNIGVFVNK-NGEPSR-KSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe-cceEEEEcC-CCCcCc-ccEEEc-CCch
Confidence 55888899876554333211 123333333 345666543 332233333 332222 112222 2244
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE
Q 002495 850 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT 882 (915)
Q Consensus 850 ~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~ 882 (915)
..+++ ...||++.+. +.|.||++.+++++.
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEEE
Confidence 45555 3456776655 569999999998873
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00015 Score=84.00 Aligned_cols=227 Identities=16% Similarity=0.125 Sum_probs=135.5
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCce-----
Q 002495 638 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS----- 712 (915)
Q Consensus 638 V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~----- 712 (915)
+++++|+|..-+||.|-.-|.+.||...+.+.......|..+|..+.|+++|..|+++..-|.|.+|..+-.+..
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 566999999999999999999999998888877778899999999999999999999999999999987621110
Q ss_pred ------------EEEec---------------cCCCCeE-EEEE-------------cCCCCeEEEEEeCCCcEEEEEcC
Q 002495 713 ------------LRTFM---------------GHSASVM-SLDF-------------HPNKDDLICSCDGDGEIRYWSIN 751 (915)
Q Consensus 713 ------------~~~~~---------------~h~~~V~-sl~f-------------sp~~~~ll~s~s~Dg~I~iwdl~ 751 (915)
+..+. +....+- -..| .|+| ..|+.++.+|+|+..|-.
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g-~~F~~~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKG-TEFLFAGKSGTVYYVDQN 220 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCC-cEEEEEcCCceEEEEcCC
Confidence 00000 0000000 0011 1233 345577778888877743
Q ss_pred CCeeEEEeecCc-eEEEEecCCCEEEEEEcCCeEEEEECC-Cc---------------e-----------------EEEE
Q 002495 752 NGSCTRVFKGGT-AQMRFQPHLGRYLAAAAENVVSILDAE-TQ---------------A-----------------CRLS 797 (915)
Q Consensus 752 ~~~~~~~~~~~~-~~v~~sp~~~~ll~~~~dg~I~i~D~~-t~---------------~-----------------~~~~ 797 (915)
+++..+.+... ..+-|.+....+++...+-++.+|-+. +| . ..+-
T Consensus 221 -g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg 299 (1416)
T KOG3617|consen 221 -GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYG 299 (1416)
T ss_pred -CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchh
Confidence 44444443321 122233333333333333222222111 00 0 0000
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC----CCcceE---EEeccCCCceEEEEEeCCCCEEEEEEcC
Q 002495 798 LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG----SEGECV---HELSCNGNKFHSCVFHPTYPSLLVIGCY 867 (915)
Q Consensus 798 l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~----~~~~~i---~~~~~~~~~i~~i~~spdg~~l~s~s~d 867 (915)
+ .....++|+|++..+-.|+.|... .+.+|--... ....-. .......+.|+.|.|.|-.+.+++.+..
T Consensus 300 ~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~ 376 (1416)
T KOG3617|consen 300 L-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEE 376 (1416)
T ss_pred h-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhh
Confidence 0 123568999999888888877776 8999954322 111222 2223345678999999876665555443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0032 Score=68.18 Aligned_cols=215 Identities=15% Similarity=0.156 Sum_probs=122.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEE---------
Q 002495 687 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--------- 757 (915)
Q Consensus 687 pdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~--------- 757 (915)
..++.|+.|+.+| |.++++.......+... ...|..+...++-+.+++-+ |+.|+++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3577999999998 99999943333333332 23399999998877666444 5999999987654333
Q ss_pred ------EeecCceEEEEe----cCCCEEEEEEcCCeEEEEECCCc-----eEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002495 758 ------VFKGGTAQMRFQ----PHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSE 822 (915)
Q Consensus 758 ------~~~~~~~~v~~s----p~~~~ll~~~~dg~I~i~D~~t~-----~~~~~l~~h~~~V~si~~spdg~~Las~s~ 822 (915)
.+.....+..|. ..+...+++.....|.+|..... +...++. -.+.+.+++|. ++.|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 111111222233 44556777777778888877653 3444444 45778899998 677888888
Q ss_pred CeEEEEECCCCCCcceEEEeccC---------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEE
Q 002495 823 DSVRVWTVGSGSEGECVHELSCN---------GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAA 892 (915)
Q Consensus 823 d~I~iwdl~s~~~~~~i~~~~~~---------~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~ 892 (915)
+...+.|+.++...... ..... ......+.--+++.+|++ .+..-.+.|....... ....-...+..
T Consensus 157 ~~f~~idl~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~--~~~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELL-DPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC--YDNIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred CceEEEecCCCCceEEe-CccCCcchhhhcccCCCceEEEEeCCceEEEE--ecceEEEEcCCCCcCcccEEEcCCchhE
Confidence 88999999866432222 11111 111222223334455543 2333334444332221 11222334555
Q ss_pred EEEeCCCCEEEEEecCCcEEEcC
Q 002495 893 LAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 893 l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
+++.. .||+..+.+ .|.||+
T Consensus 234 ~~~~~--pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 234 VAYSS--PYLIAFSSN-SIEVRS 253 (275)
T ss_pred EEEEC--CEEEEECCC-EEEEEE
Confidence 66533 377766554 488774
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0084 Score=70.99 Aligned_cols=184 Identities=11% Similarity=0.059 Sum_probs=113.3
Q ss_pred CCEEEEEECCCcEEEEECCCCceeeEeccCC-CcEE---E-------EEECCCCCEEEEEeCCCeEEEEECCCCCceEEE
Q 002495 647 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLIT---D-------VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 715 (915)
Q Consensus 647 g~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~-~~V~---~-------l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~ 715 (915)
+.+|++++.++.|+-+|..+++.+-.+.... ..+. + +++ .+..|++++.|+.|...|.++ ++.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~T-Gk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKT-GKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence 4477777788899999999999887765321 1111 1 122 234678888899999999988 555543
Q ss_pred ecc--CC--CCeEE-EEEcCCCCeEEEEEe-----CCCcEEEEEcCCCeeEEEeecCc----------------------
Q 002495 716 FMG--HS--ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT---------------------- 763 (915)
Q Consensus 716 ~~~--h~--~~V~s-l~fsp~~~~ll~s~s-----~Dg~I~iwdl~~~~~~~~~~~~~---------------------- 763 (915)
+.. +. ..+.+ -.+. ++.+++..+ .+|.|+.+|.++|+.+..+....
T Consensus 146 ~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred cccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 331 11 11111 1111 234443322 26899999999998876653210
Q ss_pred -------------eEEEEecCCCEEEEEEcC-----C-----------eEEEEECCCceEEEEecCCCCCe---------
Q 002495 764 -------------AQMRFQPHLGRYLAAAAE-----N-----------VVSILDAETQACRLSLQGHTKPI--------- 805 (915)
Q Consensus 764 -------------~~v~~sp~~~~ll~~~~d-----g-----------~I~i~D~~t~~~~~~l~~h~~~V--------- 805 (915)
..+.+.+..+.++.+... + .|.-.|+++++.+..+......+
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 123566767777776522 1 67788999999888776422211
Q ss_pred EEEEEcCCCC---EEEEEeCC-eEEEEECCCCCC
Q 002495 806 DSVCWDPSGE---LLASVSED-SVRVWTVGSGSE 835 (915)
Q Consensus 806 ~si~~spdg~---~Las~s~d-~I~iwdl~s~~~ 835 (915)
.-+.+..+|+ .++.+..+ .+++.|-++++.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 1122334666 66677777 899999988753
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.029 Score=58.72 Aligned_cols=271 Identities=11% Similarity=0.033 Sum_probs=152.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEecc--CCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCce
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 712 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~ 712 (915)
.+.+..+.|+.+ +...+..+.-++|+|+.+......+.. -.+.-.++. -.|++.+++..|.-+.+.|+.++..+
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCc
Confidence 445677777754 778888888999999986543333221 113333443 35789999987777889999876654
Q ss_pred EE--EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe---eEEEeecCceEEEEecCCCEEEEEEcCCeEEEE
Q 002495 713 LR--TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 787 (915)
Q Consensus 713 ~~--~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~---~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~ 787 (915)
.. .+......-..++.+ |+ ..+.+..|+-+.+.|+.... .+..+..+...-..++.+++.++...+.-+.+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvliv 238 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIV 238 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEE
Confidence 43 333344445667777 33 34466679999999997653 344444333334445555666666777778888
Q ss_pred ECCCceEEEEecC-CCCCeEEE-EEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002495 788 DAETQACRLSLQG-HTKPIDSV-CWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 864 (915)
Q Consensus 788 D~~t~~~~~~l~~-h~~~V~si-~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~ 864 (915)
|..+.+....+.. ....+.++ .|.-.+++......+ .+-+.|+++.........+...+..-..+.. .+.++..+
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yia 316 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIA 316 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEec
Confidence 8877653333321 11222222 233346666666666 6777777665433332222222222222222 22233333
Q ss_pred EcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 865 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 865 s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
..+ ...+.|....+.+ ...+....+.+.+.+-+.+++.+...++-+.||+
T Consensus 317 dkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 317 DKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred cCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 322 3444444443333 2222333344445555566888888999999985
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0083 Score=68.52 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=61.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002495 800 GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 878 (915)
Q Consensus 800 ~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~ 878 (915)
.....|.|++++|+.+.|+.|+.| .|.+||...+ +..+....-..+.++|||+|..|++|+..|.|.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-----~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-----VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-----eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 367789999999999999999999 9999998765 2222233556788999999999999999999999998644
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.014 Score=67.05 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=100.2
Q ss_pred cEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----ceEEEeccCCCCeEEEEEcCCC
Q 002495 658 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-----YSLRTFMGHSASVMSLDFHPNK 732 (915)
Q Consensus 658 ~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~-----~~~~~~~~h~~~V~sl~fsp~~ 732 (915)
.|.||+. .|+.+..+.-..+.|.++.|+.+ ..|++...||.+++||+.... ..+....-....|..+.+..+|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4888885 45666666655589999999875 566677789999999996311 0111111111222223333233
Q ss_pred CeEEEEEeCCCcEEEEEcCCCe-eEEEe---ecCce----------EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 002495 733 DDLICSCDGDGEIRYWSINNGS-CTRVF---KGGTA----------QMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 798 (915)
Q Consensus 733 ~~ll~s~s~Dg~I~iwdl~~~~-~~~~~---~~~~~----------~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l 798 (915)
+++. ..++.|++.+-.... ..+.+ ..... ...+..+....+....++.+.+.+....+. +
T Consensus 140 --ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 3322 234444443322211 11111 11000 012333444444445555555444332211 1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-CCceEEEEEeCCC
Q 002495 799 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTY 858 (915)
Q Consensus 799 ~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-~~~i~~i~~spdg 858 (915)
. ..+++..|++||+|++||....+ .+.|....-. .++.++... ......+.|+-+.
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCC
Confidence 1 24689999999999999988887 7777765332 334444433 3455667776654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0023 Score=71.18 Aligned_cols=207 Identities=14% Similarity=0.088 Sum_probs=114.5
Q ss_pred eEEEEECCCCCceEEEecc-CCCCeEEEE---EcCC---CCeEEEEEeC----------CCcEEEEEcCCC-----eeEE
Q 002495 700 TVRVWDADNPGYSLRTFMG-HSASVMSLD---FHPN---KDDLICSCDG----------DGEIRYWSINNG-----SCTR 757 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~~~-h~~~V~sl~---fsp~---~~~ll~s~s~----------Dg~I~iwdl~~~-----~~~~ 757 (915)
.|++.|..+ ...+..+.- ....|++++ |..+ ...+|+.|.. .|.|.++++... ++..
T Consensus 3 ~i~l~d~~~-~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTT-FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTT-SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCC-CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 467777765 333333321 223344333 3322 1455555532 289999999984 2222
Q ss_pred ----EeecCceEEEEecCCCEEEEEEcCCeEEEEECCCce-EEEEec-CCCCCeEEEEEcCCCCEEEEEeCC-eEEEEEC
Q 002495 758 ----VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 830 (915)
Q Consensus 758 ----~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~-~~~~l~-~h~~~V~si~~spdg~~Las~s~d-~I~iwdl 830 (915)
.+++.+.+++.. +++ ++++.++.|.+|++...+ ....-. .....+.++... +++|++|... .|.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 233455555444 566 555566899999988776 333222 123356666655 5688888765 7777655
Q ss_pred CCCCC-cceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--cEE--EEcccCCCeEEE---EE
Q 002495 831 GSGSE-GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-------N--KTM--TLTAHEGLIAAL---AV 895 (915)
Q Consensus 831 ~s~~~-~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~-------~--~~~--~~~~h~~~V~~l---~~ 895 (915)
..... ...+. -......++++.|-.+++.++++..+|.|.++.... + +.. ........|+++ ++
T Consensus 157 ~~~~~~l~~va-~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVA-RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEE-EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EccCCEEEEEE-ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 43211 12222 223355688888886667999999999999998763 2 222 233345667777 44
Q ss_pred eC--CCC------EEEEEecCCcEEE
Q 002495 896 ST--ETG------YVASASHDKFVKL 913 (915)
Q Consensus 896 sp--dg~------~Lasgs~Dg~I~I 913 (915)
.+ .+. .++.++.+|.|.+
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eecCCCCcccccceEEEEecCCEEEE
Confidence 44 122 4778888998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00054 Score=77.59 Aligned_cols=228 Identities=15% Similarity=0.145 Sum_probs=116.4
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEe--cc------CCCcEEEEEECC-----CC-
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EE------HSSLITDVRFSP-----SM- 689 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l--~~------h~~~V~~l~fsp-----dg- 689 (915)
.|.+...++...++|++++.|.-| ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 477888888889999999998665 9999999999999999876666542 22 345688888863 22
Q ss_pred --CEEEEEeCCCeEEEEECCC-C-CceEEEec----cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec
Q 002495 690 --PRLATSSFDKTVRVWDADN-P-GYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 761 (915)
Q Consensus 690 --~~Lasgs~Dg~I~iWdl~~-~-~~~~~~~~----~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~ 761 (915)
-+|++|...|.+.+|.+.- . +.....+. .+.+.|.. |..+|.++++.......
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~-------------------I~~i~~~~G~~a~At~~ 214 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILS-------------------IIPINADTGESALATIS 214 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----E-------------------EEEEETTT--B-B-BHH
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEE-------------------EEEEECCCCCcccCchh
Confidence 3678888889999987751 1 11111110 11122221 22334443332111100
Q ss_pred CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEc-----CCCCEEEEEeCC-eEEEEECCCCCC
Q 002495 762 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-----PSGELLASVSED-SVRVWTVGSGSE 835 (915)
Q Consensus 762 ~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~s-----pdg~~Las~s~d-~I~iwdl~s~~~ 835 (915)
....+.-......+++.+.+..++|+...+.+..++..........+++- ..+..|++...+ .|++|.+-.-
T Consensus 215 ~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-- 292 (395)
T PF08596_consen 215 AMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-- 292 (395)
T ss_dssp HHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---
T ss_pred HhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc--
Confidence 00000000011346677778999999998887776665332233344553 245567777777 9999999765
Q ss_pred cceEEEeccC----CCceEEEEEeCCCCEEEEEEcCC--eEEEEE
Q 002495 836 GECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQ--SLELWN 874 (915)
Q Consensus 836 ~~~i~~~~~~----~~~i~~i~~spdg~~l~s~s~dg--~I~iwd 874 (915)
+.+..+... ...+..+.++++|..++..+... .+.+|.
T Consensus 293 -kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~ 336 (395)
T PF08596_consen 293 -KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWG 336 (395)
T ss_dssp --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred -hHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence 344333332 12345567788888776665543 344443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0087 Score=65.42 Aligned_cols=215 Identities=10% Similarity=0.102 Sum_probs=128.5
Q ss_pred EEECCCCCEEEEE-eCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-
Q 002495 683 VRFSPSMPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK- 760 (915)
Q Consensus 683 l~fspdg~~Lasg-s~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~- 760 (915)
..|.++...|+-+ -..+.|.-|+..+... +.+. +...+.++.....+..++ ++ +..+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEecc
Confidence 3566666644444 4477888888875322 2332 233345555544444444 54 3456777776665533321
Q ss_pred -------cCceEEEEecCCCEEEEEEc-----------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002495 761 -------GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 822 (915)
Q Consensus 761 -------~~~~~v~~sp~~~~ll~~~~-----------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~ 822 (915)
...+.+.+.|++...+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 12345778888666665443 134555554 45555555655566788999999997777766
Q ss_pred C--eEEEEECCC--CCCc--ceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EEcccCCCeEEEE
Q 002495 823 D--SVRVWTVGS--GSEG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALA 894 (915)
Q Consensus 823 d--~I~iwdl~s--~~~~--~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg-~I~iwd~~~~~~~-~~~~h~~~V~~l~ 894 (915)
. .|..|++.. +... .....+....+..-.++...+|.+.+++...| .|.+|+.. ++++ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 5 677776652 2111 12222333445666778888888776555554 99999999 6666 4444447888888
Q ss_pred Ee-CCCCEEEEE
Q 002495 895 VS-TETGYVASA 905 (915)
Q Consensus 895 ~s-pdg~~Lasg 905 (915)
|- ++.+.|+..
T Consensus 262 FgG~~~~~L~iT 273 (307)
T COG3386 262 FGGPDLNTLYIT 273 (307)
T ss_pred EeCCCcCEEEEE
Confidence 85 445544433
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.063 Score=65.81 Aligned_cols=237 Identities=8% Similarity=0.002 Sum_probs=123.5
Q ss_pred CeEEEEEcCCCCEEEEEECC-----CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCC------CeEEEEE
Q 002495 637 KVICCHFSSDGKLLATGGHD-----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWD 705 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~D-----g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~I~iWd 705 (915)
.+..+.|+|||++||.+... ..|+|.|+.+++.+........ ..++|.+|++.|+.+..+ ..|++|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999988876533 3688999988764332222222 459999999877665442 3688888
Q ss_pred CCCCC-ceEEEeccCCCCeE-EEEEcCCCCeEEEEEeC--CCcEEEEEcC--CCeeEEEeec-CceEEEEecCCCEEEEE
Q 002495 706 ADNPG-YSLRTFMGHSASVM-SLDFHPNKDDLICSCDG--DGEIRYWSIN--NGSCTRVFKG-GTAQMRFQPHLGRYLAA 778 (915)
Q Consensus 706 l~~~~-~~~~~~~~h~~~V~-sl~fsp~~~~ll~s~s~--Dg~I~iwdl~--~~~~~~~~~~-~~~~v~~sp~~~~ll~~ 778 (915)
+.++. .....+........ .+..+.++..+++.+.. ++.+.+|+.. .+.....+.. ......+...++.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~ 285 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLR 285 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEE
Confidence 88742 22333443333333 33334466766644433 4678999853 3332222221 11112222334555554
Q ss_pred EcC----CeEEEEECCC-ceEEEEecCC-C-CCeEEEEEcCCCCEEEEEeCC---eEEEEECCCCCCcceEEEec-cCCC
Q 002495 779 AAE----NVVSILDAET-QACRLSLQGH-T-KPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELS-CNGN 847 (915)
Q Consensus 779 ~~d----g~I~i~D~~t-~~~~~~l~~h-~-~~V~si~~spdg~~Las~s~d---~I~iwdl~s~~~~~~i~~~~-~~~~ 847 (915)
+.. ..|...++.. ++.. .+..+ . ..|..+.+.. +.++++...+ .|++++...+ .+..+. ....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~-~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~ 359 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWE-ELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPA 359 (686)
T ss_pred EcCCCCCceEEEecCCCcccCe-EEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCc
Confidence 442 2444455552 2222 23333 3 3678888873 3455555544 4666665422 222222 1122
Q ss_pred ceEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCcEE
Q 002495 848 KFHSCVFH--PTYP-SLLVIGCY---QSLELWNMSENKTM 881 (915)
Q Consensus 848 ~i~~i~~s--pdg~-~l~s~s~d---g~I~iwd~~~~~~~ 881 (915)
.+..+.++ +++. .+++.+.. +.|+.||+.+++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 360 YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 23333344 3444 34333332 48889998876543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.1e-05 Score=91.10 Aligned_cols=196 Identities=18% Similarity=0.233 Sum_probs=132.4
Q ss_pred CcEEEEEECCCC--CEEEEEeCCCeEEEEECCCCCce-EEEeccCCCCeEEEEEcCCCCeEEEEEe----CCCcEEEEEc
Q 002495 678 SLITDVRFSPSM--PRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSI 750 (915)
Q Consensus 678 ~~V~~l~fspdg--~~Lasgs~Dg~I~iWdl~~~~~~-~~~~~~h~~~V~sl~fsp~~~~ll~s~s----~Dg~I~iwdl 750 (915)
..+.|+++..+. .++++|..+|.|.+-.++.+... .....++...+++++|++-...+||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 346667665543 46788889999999988764333 4555678899999999987666775653 3678999999
Q ss_pred CCCee----EEEe----ecCceEEEEecCCCEEEEEEcCCeEEEEECCCc-eEEEEecCCCCCeEEEEEcC-CCCEEEEE
Q 002495 751 NNGSC----TRVF----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP-SGELLASV 820 (915)
Q Consensus 751 ~~~~~----~~~~----~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~-~~~~~l~~h~~~V~si~~sp-dg~~Las~ 820 (915)
.++-. ...| ..+...++|..+.+.+++|.....+.++|++-. ..... ..+..|..+.++| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceecc
Confidence 87621 1112 234567888877778888888889999999843 11111 1334577788888 78899988
Q ss_pred eCCeEEEEE-CCCCCCcceEEEeccCC----CceEEEEEeCCCC-EEEEEEcC-CeEEEEECCC
Q 002495 821 SEDSVRVWT-VGSGSEGECVHELSCNG----NKFHSCVFHPTYP-SLLVIGCY-QSLELWNMSE 877 (915)
Q Consensus 821 s~d~I~iwd-l~s~~~~~~i~~~~~~~----~~i~~i~~spdg~-~l~s~s~d-g~I~iwd~~~ 877 (915)
.++.|.+|| .++-+ ..+..+.... ..+..++|+|... .+++...| ++|++||+..
T Consensus 215 ~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 877999999 33322 1121121122 2488899999653 34555554 5899999853
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0077 Score=72.88 Aligned_cols=212 Identities=9% Similarity=0.115 Sum_probs=129.5
Q ss_pred CEEEEE-eCCCeEEEEECCCCCceEEEeccCCCC-eEEEEEcC-----CCCeEEEEEeCCCcEEEEEcCCCe--eEE---
Q 002495 690 PRLATS-SFDKTVRVWDADNPGYSLRTFMGHSAS-VMSLDFHP-----NKDDLICSCDGDGEIRYWSINNGS--CTR--- 757 (915)
Q Consensus 690 ~~Lasg-s~Dg~I~iWdl~~~~~~~~~~~~h~~~-V~sl~fsp-----~~~~ll~s~s~Dg~I~iwdl~~~~--~~~--- 757 (915)
++|+.. .....|+-.|++. ++.+..+..|... |..++-.. .....| .|-.+..|+.||.|-.. ++.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ceEeecCCCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccc
Confidence 344433 3467899999998 8888888877654 55554321 122233 57779999999998643 332
Q ss_pred -Eeec--CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC--C
Q 002495 758 -VFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG--S 832 (915)
Q Consensus 758 -~~~~--~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~--s 832 (915)
.+.. ...|+ ..-..++|++|+.+|.|++||.........+.+-..+|..|+.+.||++|++.|...|.|++.. .
T Consensus 572 k~Y~~~~~Fs~~-aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~~ 650 (794)
T PF08553_consen 572 KQYSSKNNFSCF-ATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIKD 650 (794)
T ss_pred cccccCCCceEE-EecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeeec
Confidence 1111 22333 3445589999999999999995444444456677899999999999999999998888888753 1
Q ss_pred CC---------------C--cceEEEec----------cCCCceEEEEEeC---CCCEEEEEEcCCeEEEEECCC---C-
Q 002495 833 GS---------------E--GECVHELS----------CNGNKFHSCVFHP---TYPSLLVIGCYQSLELWNMSE---N- 878 (915)
Q Consensus 833 ~~---------------~--~~~i~~~~----------~~~~~i~~i~~sp---dg~~l~s~s~dg~I~iwd~~~---~- 878 (915)
++ . ...+..-. +....++...|+- .....++++....+.+|+++. +
T Consensus 651 g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g~ 730 (794)
T PF08553_consen 651 GKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKVKRGK 730 (794)
T ss_pred CCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHHhCCC
Confidence 10 0 01111100 1112233445542 124566667778999999853 2
Q ss_pred -cEEEEcccCCCeEEEE--EeCCCCEEEE
Q 002495 879 -KTMTLTAHEGLIAALA--VSTETGYVAS 904 (915)
Q Consensus 879 -~~~~~~~h~~~V~~l~--~spdg~~Las 904 (915)
.+..+..-...|.+-. |..+..+|++
T Consensus 731 ~~~Y~ikry~~~V~~dnF~fg~d~~viva 759 (794)
T PF08553_consen 731 KDPYQIKRYDENVVADNFKFGSDKNVIVA 759 (794)
T ss_pred CCceEEEEcCCceEEccceeCCCCcEEEE
Confidence 2334555555665544 3445444444
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.012 Score=65.25 Aligned_cols=240 Identities=13% Similarity=0.114 Sum_probs=116.3
Q ss_pred ECCCCceeeEeccCCCcEEE-----EEECCCCCEEEEEeC-CCe--EEEEECCCCCceEEEeccCC-CCeEEEEEcCCCC
Q 002495 663 HTDTLKSKTNLEEHSSLITD-----VRFSPSMPRLATSSF-DKT--VRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKD 733 (915)
Q Consensus 663 d~~t~~~~~~l~~h~~~V~~-----l~fspdg~~Lasgs~-Dg~--I~iWdl~~~~~~~~~~~~h~-~~V~sl~fsp~~~ 733 (915)
|..++..+..+..+...... =+|..||+.|+.++. ||. +.+.|+.+ ..+..+.... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEecCCC
Confidence 45566666666544333322 256778987766655 554 55566665 4455555443 2233566778877
Q ss_pred eEEEEEeCCCcEEEEEcCCCeeEEEeec--Cce-EEEEe-cCCCEEEEEEc-----------------------CCeEEE
Q 002495 734 DLICSCDGDGEIRYWSINNGSCTRVFKG--GTA-QMRFQ-PHLGRYLAAAA-----------------------ENVVSI 786 (915)
Q Consensus 734 ~ll~s~s~Dg~I~iwdl~~~~~~~~~~~--~~~-~v~~s-p~~~~ll~~~~-----------------------dg~I~i 786 (915)
.+++.. .+..|+..|+++.+....+.. .-. ...|. ..+...+++.. ...|..
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 666443 456889999999876555543 222 23443 22333344332 136667
Q ss_pred EECCCceEEEEecCCCCCeEEEEEcCCCC-EEEEEeCC---e--EEEEECCCCC-CcceEEEeccCCCceEEEEEeCCCC
Q 002495 787 LDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSED---S--VRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYP 859 (915)
Q Consensus 787 ~D~~t~~~~~~l~~h~~~V~si~~spdg~-~Las~s~d---~--I~iwdl~s~~-~~~~i~~~~~~~~~i~~i~~spdg~ 859 (915)
.|+++++....+. ....+..+-|+|... +|+.|.++ . -|||-+++.. ..+.++.-. ....+..=-|.+||.
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCC
Confidence 7888887655554 456788999999655 55555555 3 3888876532 222232221 123344446899998
Q ss_pred EEEEEEc-----CCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002495 860 SLLVIGC-----YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 908 (915)
Q Consensus 860 ~l~s~s~-----dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D 908 (915)
.|..-+. +..|.-+|..+++...+..-. ....+-.++||++++-=+.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 8776543 336777888887654332222 34455567888887754444
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.024 Score=65.35 Aligned_cols=218 Identities=13% Similarity=0.110 Sum_probs=121.1
Q ss_pred cEEEEEECCCCCEEEEE-eCCC----eEEEEECCCCCceEE-EeccCCCCeEEEEEcCCCCeEEEEEeCC----------
Q 002495 679 LITDVRFSPSMPRLATS-SFDK----TVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD---------- 742 (915)
Q Consensus 679 ~V~~l~fspdg~~Lasg-s~Dg----~I~iWdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~s~s~D---------- 742 (915)
.+..++++|++++||.+ +..| .|+|+|+++ +..+. .+... ....+.|.+++..++++...+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 34467899999998866 3333 599999998 44433 22221 122399999988888776443
Q ss_pred CcEEEEEcCCCee--EEEeec--C---ceEEEEecCCCEEEEEEc---C-CeEEEEECCCc-----eEEEEecCCCCCeE
Q 002495 743 GEIRYWSINNGSC--TRVFKG--G---TAQMRFQPHLGRYLAAAA---E-NVVSILDAETQ-----ACRLSLQGHTKPID 806 (915)
Q Consensus 743 g~I~iwdl~~~~~--~~~~~~--~---~~~v~~sp~~~~ll~~~~---d-g~I~i~D~~t~-----~~~~~l~~h~~~V~ 806 (915)
..|++|++.+... ...|.. . ...+..+.++.++++... + ..|++.|+..+ ..........+...
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 2378888877642 234432 2 335778888888777554 2 46888898874 33333332333333
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC-CC
Q 002495 807 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMS-EN 878 (915)
Q Consensus 807 si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg---~I~iwd~~-~~ 878 (915)
.+... .+.+++....+ .|...++...........+..+...+.-..+...+.+|++...++ .|++|++. ..
T Consensus 282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence 34444 44444444443 566667766543222334444444333334444555666655443 79999999 55
Q ss_pred cEEEEcc-cCCCeEEEEEeCCCC
Q 002495 879 KTMTLTA-HEGLIAALAVSTETG 900 (915)
Q Consensus 879 ~~~~~~~-h~~~V~~l~~spdg~ 900 (915)
....+.. -.+.|..+...+++.
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-S
T ss_pred EEeeecCCcceEEeccCCCCCCC
Confidence 4443332 334455555555544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.016 Score=66.49 Aligned_cols=188 Identities=9% Similarity=0.122 Sum_probs=97.9
Q ss_pred eEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee-----cCceEEE----Eec
Q 002495 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMR----FQP 770 (915)
Q Consensus 700 ~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~-----~~~~~v~----~sp 770 (915)
.|+||+.. +..+..+.-..+.|.++.|..+ ..|+ ....||.+++||+.... ...+. ..+.... +..
T Consensus 62 ~I~iys~s--G~ll~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSS--GKLLSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCC--CCEeEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 47777765 3444444333378999999875 4455 55679999999987333 11111 1111111 122
Q ss_pred CCCEEEEEEcCCeEEEEECCCce-EEEEe---cCCCC------CeE-EEEEcCCCCEEEEEeCC-eEEEEECCCCCCcce
Q 002495 771 HLGRYLAAAAENVVSILDAETQA-CRLSL---QGHTK------PID-SVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 838 (915)
Q Consensus 771 ~~~~ll~~~~dg~I~i~D~~t~~-~~~~l---~~h~~------~V~-si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~ 838 (915)
..+ +++-..++.|++..--... ....+ ..... .+. ...++.+....+....+ .+.+.+-...
T Consensus 137 ~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----- 210 (410)
T PF04841_consen 137 KNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----- 210 (410)
T ss_pred CCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----
Confidence 234 3333445555554332221 11111 11000 000 02234444444444444 5553332211
Q ss_pred EEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcc-cCCCeEEEEEeCCCC
Q 002495 839 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEGLIAALAVSTETG 900 (915)
Q Consensus 839 i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~-h~~~V~~l~~spdg~ 900 (915)
..+. ..+.+..++++|++++++.-..+|.+.|....-.+.+ .+.. -......+.|.-+..
T Consensus 211 -~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 -KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred -cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 0111 2468999999999999999999999999877655555 2222 234556676765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00024 Score=80.67 Aligned_cols=98 Identities=12% Similarity=0.133 Sum_probs=81.4
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEE-EEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 002495 632 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-DVRFSPSMPRLATSSFDKTVRVWDADNPG 710 (915)
Q Consensus 632 ~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~-~l~fspdg~~Lasgs~Dg~I~iWdl~~~~ 710 (915)
+.-.-.|.-+.|+|.-.++|++..+|.|.++.+. ...+.++..|...|+ +++|.|||+.||+|-.||+|++.|++++.
T Consensus 17 ~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 17 MSLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred hccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 3345578899999999999999999999999988 788889988888888 99999999999999999999999999855
Q ss_pred ceEEEeccCCCCeEEEEEcC
Q 002495 711 YSLRTFMGHSASVMSLDFHP 730 (915)
Q Consensus 711 ~~~~~~~~h~~~V~sl~fsp 730 (915)
............|.++-|.+
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 44443344556677777753
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.059 Score=63.90 Aligned_cols=146 Identities=12% Similarity=0.080 Sum_probs=86.2
Q ss_pred CEEEEEECCCcEEEEECCCCceeeEeccC--C--CcEEEEEECCCCCEEEEEe------CCCeEEEEECCCCCceEEEec
Q 002495 648 KLLATGGHDKKAVLWHTDTLKSKTNLEEH--S--SLITDVRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTFM 717 (915)
Q Consensus 648 ~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h--~--~~V~~l~fspdg~~Lasgs------~Dg~I~iWdl~~~~~~~~~~~ 717 (915)
..|++++.|+.|.-+|.++++.+-..... . ..+++--.--++ .|+++. .+|.|+.+|.++ ++.+-.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~T-G~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKT-GKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCC-CceeEecc
Confidence 46777888999999999999988766532 1 111111001134 455543 268899999987 44433222
Q ss_pred cC-------------------------------CCCeE-EEEEcCCCCeEEEEEeC----CC-----------cEEEEEc
Q 002495 718 GH-------------------------------SASVM-SLDFHPNKDDLICSCDG----DG-----------EIRYWSI 750 (915)
Q Consensus 718 ~h-------------------------------~~~V~-sl~fsp~~~~ll~s~s~----Dg-----------~I~iwdl 750 (915)
.- ...|+ .+.+.+..+.+++-.+. ++ .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 11 01122 23566654544433322 22 6778899
Q ss_pred CCCeeEEEeecC----------ceEEE--EecCCC---EEEEEEcCCeEEEEECCCceEE
Q 002495 751 NNGSCTRVFKGG----------TAQMR--FQPHLG---RYLAAAAENVVSILDAETQACR 795 (915)
Q Consensus 751 ~~~~~~~~~~~~----------~~~v~--~sp~~~---~ll~~~~dg~I~i~D~~t~~~~ 795 (915)
++|+.+..|... ...+. +..+++ .++.+..+|.++++|.++++.+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999988776531 11122 224554 4557777999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.023 Score=63.07 Aligned_cols=211 Identities=12% Similarity=0.147 Sum_probs=123.7
Q ss_pred cEEEEECCCCceeeEeccC-CCcEEEE---EECCC----CCEEEEEeC----------CCeEEEEECCCC---CceEE--
Q 002495 658 KAVLWHTDTLKSKTNLEEH-SSLITDV---RFSPS----MPRLATSSF----------DKTVRVWDADNP---GYSLR-- 714 (915)
Q Consensus 658 ~V~vwd~~t~~~~~~l~~h-~~~V~~l---~fspd----g~~Lasgs~----------Dg~I~iWdl~~~---~~~~~-- 714 (915)
.|+|.|..+.+.+..+.-. ...|+++ .|..+ ..+|++|.. .|.|.++++.+. ...++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5888888887777665532 2334443 34432 457777743 289999999873 11222
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eEEE--eecCceEEEEecCCCEEEEEEcCCeEEEE--EC
Q 002495 715 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSIL--DA 789 (915)
Q Consensus 715 ~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~-~~~~--~~~~~~~v~~sp~~~~ll~~~~dg~I~i~--D~ 789 (915)
.-....+.|++|+-. ++.++++. ++.|++|++...+ .... +......+.....+++++++.....|.++ +.
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 223457889999877 34555443 5899999999887 4443 33445566666667899999888877776 54
Q ss_pred CCceEEEEe-cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC-----C---CcceEEEeccCCCceEEE---EEeC
Q 002495 790 ETQACRLSL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-----S---EGECVHELSCNGNKFHSC---VFHP 856 (915)
Q Consensus 790 ~t~~~~~~l-~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~-----~---~~~~i~~~~~~~~~i~~i---~~sp 856 (915)
...+....- ......+++++|..+++.++++..+ .|.++..... . ....+..+.. +..|+++ .+.+
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNSFRRGSLIP 237 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccceEEEEEeee
Confidence 333222221 2245568899998666777777777 8888877531 1 1122233332 4556666 4444
Q ss_pred --CCC------EEEEEEcCCeEEEE
Q 002495 857 --TYP------SLLVIGCYQSLELW 873 (915)
Q Consensus 857 --dg~------~l~s~s~dg~I~iw 873 (915)
.+. .++.++.+|.|.+.
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCCcccccceEEEEecCCEEEEE
Confidence 122 48888888887733
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.015 Score=69.53 Aligned_cols=210 Identities=16% Similarity=0.172 Sum_probs=113.7
Q ss_pred CCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEe------CCC--eEEEEECCCCCceEEEeccCCCCeEEEE
Q 002495 656 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------FDK--TVRVWDADNPGYSLRTFMGHSASVMSLD 727 (915)
Q Consensus 656 Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs------~Dg--~I~iWdl~~~~~~~~~~~~h~~~V~sl~ 727 (915)
+|.+.-.+-.....+.-..+....+...+++++|+.++..- .|. .|.+++.. +.......+. ..+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCC--CCCCce
Confidence 55554443222222222223334688999999999887765 244 45555543 3332223332 377889
Q ss_pred EcCCCCeEEEEEe-----------CCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEE---EECCCce
Q 002495 728 FHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI---LDAETQA 793 (915)
Q Consensus 728 fsp~~~~ll~s~s-----------~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i---~D~~t~~ 793 (915)
|+|+++.+.+... ..+.|.+.+++.+.....+.+.+..+.|+|++.+++... ++.|++ .....+.
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 9999775553322 223455556655544435566789999999999988876 477777 4544454
Q ss_pred EEE----Eec-CCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC
Q 002495 794 CRL----SLQ-GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 868 (915)
Q Consensus 794 ~~~----~l~-~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg 868 (915)
... .+. .-...+.++.|..++.+++........+|.+.-.........-......+..++-.+ ..+++...++
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g 560 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP--STVYVTDARA 560 (591)
T ss_pred eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC--ceEEEEcCCc
Confidence 111 122 223346889999999866443322334454432211111101111134455555554 2455655555
Q ss_pred eEEE
Q 002495 869 SLEL 872 (915)
Q Consensus 869 ~I~i 872 (915)
.+.+
T Consensus 561 ~~~l 564 (591)
T PRK13616 561 VLQL 564 (591)
T ss_pred eEEe
Confidence 4443
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0036 Score=70.01 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=90.9
Q ss_pred EEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCC--------EEEEEeCCeEEEEECCCCCCcceEEEeccC----
Q 002495 778 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--------LLASVSEDSVRVWTVGSGSEGECVHELSCN---- 845 (915)
Q Consensus 778 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~--------~Las~s~d~I~iwdl~s~~~~~~i~~~~~~---- 845 (915)
+.....|+-.|++.|+.+.+..-+.. |+-+.+.|+.+ .|+..+...|+-||.+-.... .+.....|
T Consensus 352 ~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQSKQYST 429 (644)
T ss_pred CCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeecccccc
Confidence 34457889999999999999987766 77778888654 344444558999999854331 22111111
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecC
Q 002495 846 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 908 (915)
Q Consensus 846 ~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~D 908 (915)
...+.|++-..+| +|++|+.+|.|++||-...... .+++...+|..|..+.+|++|+..|..
T Consensus 430 k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 430 KNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred ccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 3445555555554 7999999999999998333222 678889999999999999998776654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.043 Score=62.70 Aligned_cols=118 Identities=9% Similarity=0.052 Sum_probs=81.0
Q ss_pred CCCeEEEEEcCCC----CEEEEEECCCcEEEEECC-----CCceeeEecc-C--CCc--EEEEEECCCCCEEEEEeCCCe
Q 002495 635 TSKVICCHFSSDG----KLLATGGHDKKAVLWHTD-----TLKSKTNLEE-H--SSL--ITDVRFSPSMPRLATSSFDKT 700 (915)
Q Consensus 635 ~~~V~~lafspdg----~~Lasgs~Dg~V~vwd~~-----t~~~~~~l~~-h--~~~--V~~l~fspdg~~Lasgs~Dg~ 700 (915)
-..|..++|.|-+ ..|++.-..+.|.||-+. ..+.+..-.. . .-+ --.+.|+|....|++-.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 3468999999843 345555678899999875 2222222111 1 111 235789999988887776665
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC
Q 002495 701 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 752 (915)
Q Consensus 701 I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~ 752 (915)
-.++++......++.-....+.|.|.+|..||.+++++.+..=.-+|||-..
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 5667777655555544456788999999999999998888777788998654
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.25 Score=56.19 Aligned_cols=260 Identities=15% Similarity=0.167 Sum_probs=145.0
Q ss_pred CCEEEEEECCCcEEEEECCCCcee--eE-e-ccCCCcEEEEEECC----CCCEEEEEeCCCeEEEEECCCCC--------
Q 002495 647 GKLLATGGHDKKAVLWHTDTLKSK--TN-L-EEHSSLITDVRFSP----SMPRLATSSFDKTVRVWDADNPG-------- 710 (915)
Q Consensus 647 g~~Lasgs~Dg~V~vwd~~t~~~~--~~-l-~~h~~~V~~l~fsp----dg~~Lasgs~Dg~I~iWdl~~~~-------- 710 (915)
...|++|+.+|.++||+....... .. + ..-..+|..|..-. .....++.=.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 368999999999999997533211 11 1 12356787776543 22233333556778888873211
Q ss_pred ceEEEeccCCC--CeEEEEEcC----CCCeEEEEEeCCCcEEEEEcCCCeeEEEeec--CceEEEEecCCCEEEEEEcCC
Q 002495 711 YSLRTFMGHSA--SVMSLDFHP----NKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN 782 (915)
Q Consensus 711 ~~~~~~~~h~~--~V~sl~fsp----~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~--~~~~v~~sp~~~~ll~~~~dg 782 (915)
..+.....|.- ....+++-+ .+..+|++-+.||.+.+|+-+.....+.+.+ -...+.+.+....+++++.+.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence 12333333432 233333332 2357888999999999999887665555544 235688999999999999998
Q ss_pred eEEEEECCCc--------------------e---EEEEecCCCCC---eEEEEEcCCCCEEEEEeCCeEEEEECCCCCCc
Q 002495 783 VVSILDAETQ--------------------A---CRLSLQGHTKP---IDSVCWDPSGELLASVSEDSVRVWTVGSGSEG 836 (915)
Q Consensus 783 ~I~i~D~~t~--------------------~---~~~~l~~h~~~---V~si~~spdg~~Las~s~d~I~iwdl~s~~~~ 836 (915)
.|..|....- + +-.++.. .+. |..+.++.....|++-++.++.+.+-. | ..
T Consensus 197 ~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~l 273 (418)
T PF14727_consen 197 TLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-SL 273 (418)
T ss_pred eEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-eE
Confidence 8888854210 0 1111111 122 333334334446666666666666552 2 33
Q ss_pred ceEEEeccCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEE---EeCCCCEEEEEe
Q 002495 837 ECVHELSCNGNKFHSCVFHP----TY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALA---VSTETGYVASAS 906 (915)
Q Consensus 837 ~~i~~~~~~~~~i~~i~~sp----dg---~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~---~spdg~~Lasgs 906 (915)
+..+.+.. .+...+.|.- ++ ..+++++.++.+.||.=.+ ++.-........+|. |..-...|++-+
T Consensus 274 ~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls 349 (418)
T PF14727_consen 274 RFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPVALSVANFNGLKGLIVSLS 349 (418)
T ss_pred EEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCEEEEecccCCCCceEEEEc
Confidence 34444432 2222222221 22 2588999999999996332 221111122122332 223345788888
Q ss_pred cCCcEEE
Q 002495 907 HDKFVKL 913 (915)
Q Consensus 907 ~Dg~I~I 913 (915)
.||.|.+
T Consensus 350 ~~G~L~v 356 (418)
T PF14727_consen 350 DEGQLSV 356 (418)
T ss_pred CCCcEEE
Confidence 8888765
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.075 Score=59.38 Aligned_cols=219 Identities=12% Similarity=0.115 Sum_probs=107.8
Q ss_pred CCCEEEEEE-CCCcEEEEECCC----CceeeEecc---CC----CcEEEEEECCCCCEEEEEeC------CCeEEEEECC
Q 002495 646 DGKLLATGG-HDKKAVLWHTDT----LKSKTNLEE---HS----SLITDVRFSPSMPRLATSSF------DKTVRVWDAD 707 (915)
Q Consensus 646 dg~~Lasgs-~Dg~V~vwd~~t----~~~~~~l~~---h~----~~V~~l~fspdg~~Lasgs~------Dg~I~iWdl~ 707 (915)
+.++|+..+ ..+.|+|+|+.+ .+..++++. +. ..-..+..-|+|++++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456787777 678999999873 344555542 11 12223344568888887732 2457777777
Q ss_pred CCCceEEEeccC---CCCeEEEEEcCCCCeEEEEEe--------------------CCCcEEEEEcCCCeeEEEeecCc-
Q 002495 708 NPGYSLRTFMGH---SASVMSLDFHPNKDDLICSCD--------------------GDGEIRYWSINNGSCTRVFKGGT- 763 (915)
Q Consensus 708 ~~~~~~~~~~~h---~~~V~sl~fsp~~~~ll~s~s--------------------~Dg~I~iwdl~~~~~~~~~~~~~- 763 (915)
+ ......+... ...-+++-|.|..+.+| |+. ...+|.+||+.+.+.+.++.-+.
T Consensus 166 t-f~v~g~We~~~~~~~~gYDfw~qpr~nvMi-SSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 T-FEVKGRWEKDRGPQPFGYDFWYQPRHNVMI-SSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEETTTTEEE-E-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred c-ccccceeccCCCCCCCCCCeEEcCCCCEEE-EeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 5 4444444432 23456778888765444 543 24679999999999999887542
Q ss_pred ----eEEEEe--cCCCEEEEEEc-CCeEEEE-ECCCce----EEEEecCC-----------------CCCeEEEEEcCCC
Q 002495 764 ----AQMRFQ--PHLGRYLAAAA-ENVVSIL-DAETQA----CRLSLQGH-----------------TKPIDSVCWDPSG 814 (915)
Q Consensus 764 ----~~v~~s--p~~~~ll~~~~-dg~I~i~-D~~t~~----~~~~l~~h-----------------~~~V~si~~spdg 814 (915)
..++|. |+..+-++++. ...|..| ..+.++ .+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 235554 44555555444 4555544 334432 22333211 2347899999999
Q ss_pred CEEEEEeCC--eEEEEECCCCCCcceEEEeccCC----------------CceEEEEEeCCCCEEEEEEc
Q 002495 815 ELLASVSED--SVRVWTVGSGSEGECVHELSCNG----------------NKFHSCVFHPTYPSLLVIGC 866 (915)
Q Consensus 815 ~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~~----------------~~i~~i~~spdg~~l~s~s~ 866 (915)
++|+.++-- .|+.||+......+.+..+...+ +....+..|.||+.|++..+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 999888865 89999999887777666543211 12356788999999888763
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.064 Score=54.47 Aligned_cols=204 Identities=10% Similarity=0.080 Sum_probs=109.1
Q ss_pred EEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcC-CCC-eEEEEEeCCCcEEEEEcC--CCeeEEEee------
Q 002495 691 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKD-DLICSCDGDGEIRYWSIN--NGSCTRVFK------ 760 (915)
Q Consensus 691 ~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp-~~~-~ll~s~s~Dg~I~iwdl~--~~~~~~~~~------ 760 (915)
++.+--..|.|.-||+.........+.+.. +.++.+-- ++. .+.+.++..-.|.-||.. ..+..+++.
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 444444466677788886333333333322 22232221 222 344455555556667733 233333321
Q ss_pred --cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC--------CCeEEEEEcCCCCEEEE-EeCC-eEEEE
Q 002495 761 --GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--------KPIDSVCWDPSGELLAS-VSED-SVRVW 828 (915)
Q Consensus 761 --~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~--------~~V~si~~spdg~~Las-~s~d-~I~iw 828 (915)
.....-..+|++.+ +.+.....-.++....+....-+.+|. ..-+.++|+.+.+.+.. -+.+ +|.-|
T Consensus 107 kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred HhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 12334456788766 444331111122222233333233332 23456889988875554 4455 78778
Q ss_pred E--CCCCCC--cceEEEeccC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeC
Q 002495 829 T--VGSGSE--GECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST 897 (915)
Q Consensus 829 d--l~s~~~--~~~i~~~~~~----~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp 897 (915)
| +.++.. .+.+..++.. .-..-.+++..+|..++++-..++|..+|..+++++ ++.--...|+++||--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 7 555532 2333333321 111233455668888888888889999999999988 6666688999999953
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0092 Score=69.06 Aligned_cols=153 Identities=9% Similarity=0.089 Sum_probs=101.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002495 676 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 755 (915)
Q Consensus 676 h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~ 755 (915)
|...|.--+++..+++|+.|+.-|.|++|+-..+........+..+.+..+..+++ ++++|+|+..|.|.++-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence 33445555667788999999999999999988643333444444455555666665 66888899999999998876421
Q ss_pred -----E----EEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCc----eEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002495 756 -----T----RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ----ACRLSLQGHTKPIDSVCWDPSGELLASVSE 822 (915)
Q Consensus 756 -----~----~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~----~~~~~l~~h~~~V~si~~spdg~~Las~s~ 822 (915)
+ ...+..+++++|++++..+++|...|.|.+..+.+. .....+......|.-+.+.. +.+|++...
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl~ 189 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTLT 189 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHhhhh
Confidence 1 112446789999999999999999999998887762 12223333456676666552 344444433
Q ss_pred CeEEEEECC
Q 002495 823 DSVRVWTVG 831 (915)
Q Consensus 823 d~I~iwdl~ 831 (915)
. ..+++++
T Consensus 190 r-~~Lc~tE 197 (726)
T KOG3621|consen 190 R-CILCQTE 197 (726)
T ss_pred h-hheeecc
Confidence 3 3344443
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.2 Score=61.44 Aligned_cols=197 Identities=11% Similarity=0.024 Sum_probs=102.9
Q ss_pred CcEEEEEECCCCCEEEEEeC-C----CeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCC-----CcEEE
Q 002495 678 SLITDVRFSPSMPRLATSSF-D----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRY 747 (915)
Q Consensus 678 ~~V~~l~fspdg~~Lasgs~-D----g~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~D-----g~I~i 747 (915)
-.+..+.|+||+++|+.+.+ + -.|++.|+.++......+.+- -..++|.+|++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 45777899999998887744 2 358888998632222222221 14599999988888766533 46888
Q ss_pred EEcCCC--eeEEEeecC---ce-EEEEecCCCEEEEEEc---CCeEEEEECC--CceEEEEecCCCCCeEEEEEcCCCCE
Q 002495 748 WSINNG--SCTRVFKGG---TA-QMRFQPHLGRYLAAAA---ENVVSILDAE--TQACRLSLQGHTKPIDSVCWDPSGEL 816 (915)
Q Consensus 748 wdl~~~--~~~~~~~~~---~~-~v~~sp~~~~ll~~~~---dg~I~i~D~~--t~~~~~~l~~h~~~V~si~~spdg~~ 816 (915)
+++.++ +....+... .. .+..+.++..+++.+. ++.+.+|+.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899887 434444431 12 1222336666665444 4578888853 3332222222222222222 333333
Q ss_pred EEEEeCC--eEEEE--ECCCCCCcceEEEeccC--CCceEEEEEeCCCCEEEEE-EcCC--eEEEEECCCCcEEEE
Q 002495 817 LASVSED--SVRVW--TVGSGSEGECVHELSCN--GNKFHSCVFHPTYPSLLVI-GCYQ--SLELWNMSENKTMTL 883 (915)
Q Consensus 817 Las~s~d--~I~iw--dl~s~~~~~~i~~~~~~--~~~i~~i~~spdg~~l~s~-s~dg--~I~iwd~~~~~~~~~ 883 (915)
++....+ ..+|+ ++..... ...+..+ ...+..+.+. +++|+.. ..++ .|++++...++...+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~---~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQ---WEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCccc---CeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 3333332 44444 4432111 1222222 2357777776 3344444 4455 456666654444443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.044 Score=59.99 Aligned_cols=185 Identities=16% Similarity=0.056 Sum_probs=115.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEecc-----CCCcEEEEEECCCCCEEEEEeC-----C----Ce
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSF-----D----KT 700 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~-----h~~~V~~l~fspdg~~Lasgs~-----D----g~ 700 (915)
.+.+.++..-.++..|+++. ..+.+++.+++..+..+.. .....+++...|+|.+.++... . ..
T Consensus 65 p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 65 PGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred CCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCc
Confidence 34455555555555566553 3567777766655333221 1245667888999877665544 1 11
Q ss_pred EEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC--C----eeEEEe----ecCceEEEEec
Q 002495 701 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--G----SCTRVF----KGGTAQMRFQP 770 (915)
Q Consensus 701 I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~--~----~~~~~~----~~~~~~v~~sp 770 (915)
-+||.++..+..++.+..+-..-+.|+|+||++.++++=+..+.|..|++.. + +....+ .+....++...
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 2455555335666777766666778999999988887777778899888763 1 111111 12334567777
Q ss_pred CCCEEEEEEcCC-eEEEEECCCceEEEEecCCCCCeEEEEEcC-CCCEEEEEeC
Q 002495 771 HLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSE 822 (915)
Q Consensus 771 ~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~~~V~si~~sp-dg~~Las~s~ 822 (915)
++...+++...| .|.+|+.. ++.+..+.-....+++++|-- +.+.|++.+.
T Consensus 223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 777665555554 99999998 888888877667788888853 4454444443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.005 Score=74.48 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=91.3
Q ss_pred cCCeEEEEECCCceEEEEecCCCCC-eEEEEEcC------CCCEEEEEeCCeEEEEECCCCCCcceEEE-e--ccCCCce
Q 002495 780 AENVVSILDAETQACRLSLQGHTKP-IDSVCWDP------SGELLASVSEDSVRVWTVGSGSEGECVHE-L--SCNGNKF 849 (915)
Q Consensus 780 ~dg~I~i~D~~t~~~~~~l~~h~~~-V~si~~sp------dg~~Las~s~d~I~iwdl~s~~~~~~i~~-~--~~~~~~i 849 (915)
....|+-.|++.|+.+..+..|... |..++-.. ....++..+...|..||.|-.. .+++.. . -.....+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-NKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC-CceeeccccccccCCCc
Confidence 3578999999999999999987754 65554321 2234555555599999998654 223311 1 1234557
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002495 850 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 913 (915)
Q Consensus 850 ~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~I 913 (915)
.|++-+.+| +||+|+.+|.||+||-...+.. .+.+-..+|.+|+.+.||++|++.|.. .|.|
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlL 643 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLL 643 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEE
Confidence 777776666 6999999999999995433222 566778999999999999998877654 3433
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.062 Score=56.14 Aligned_cols=228 Identities=12% Similarity=0.111 Sum_probs=125.2
Q ss_pred EEEEcCCC-CEEEEEECCCc-EEEEECCCCceeeEeccCCC--cEEEEEECCCCCEEEEEeC-----CCeEEEEECCCCC
Q 002495 640 CCHFSSDG-KLLATGGHDKK-AVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMPRLATSSF-----DKTVRVWDADNPG 710 (915)
Q Consensus 640 ~lafspdg-~~Lasgs~Dg~-V~vwd~~t~~~~~~l~~h~~--~V~~l~fspdg~~Lasgs~-----Dg~I~iWdl~~~~ 710 (915)
.|+|+|.- .-++.+-.-|+ ..++|........++...++ .--.=+|++||.+|+..-. -|.|-|||.+..-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 46677643 34555544454 46777776555444322111 0111279999999987744 3789999999766
Q ss_pred ceEEEeccCCCCeEEEEEcCCCCeEEEEEeC-----------------CCcEEEEEcCCCeeEEEeec-------CceEE
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCDG-----------------DGEIRYWSINNGSCTRVFKG-------GTAQM 766 (915)
Q Consensus 711 ~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~-----------------Dg~I~iwdl~~~~~~~~~~~-------~~~~v 766 (915)
..+..+..|.-.-..+.|.+||+.++++.+. .-.+.+.|..++.++....- .+..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 6777888888888889999998877655430 11233444444444433221 12334
Q ss_pred EEecCCCEEEEEEcCC-----eEEEEECCCceEEEEecC-------CCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCC
Q 002495 767 RFQPHLGRYLAAAAEN-----VVSILDAETQACRLSLQG-------HTKPIDSVCWDPSGELLASVSED--SVRVWTVGS 832 (915)
Q Consensus 767 ~~sp~~~~ll~~~~dg-----~I~i~D~~t~~~~~~l~~-------h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s 832 (915)
...+++..++.+-..| --.+=-...++.+.-+.. ....|-+|+.+.+..+++..+-. ...+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 4444443333332211 001111112222222211 12457778888766666655544 889999988
Q ss_pred CCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002495 833 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 874 (915)
Q Consensus 833 ~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd 874 (915)
+. .+.+. .-..++-+-+...-|++.+.+|.|.++.
T Consensus 312 G~---vv~~a----~l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 312 GA---VVSEA----ALPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred Cc---EEecc----cccccccceeccCceEEecCCceEEecc
Confidence 83 22221 1111222344555588888888888874
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.18 Score=53.26 Aligned_cols=183 Identities=14% Similarity=0.123 Sum_probs=116.5
Q ss_pred CcEEEEEECCCCCEEEEEeCCC--eEEEEECCCCCceEEEec-cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe
Q 002495 678 SLITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 754 (915)
Q Consensus 678 ~~V~~l~fspdg~~Lasgs~Dg--~I~iWdl~~~~~~~~~~~-~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~ 754 (915)
...-.+.|..++.++-+.+.-| .|+.+|+.+ ++...... .....-..|+.. ++.++.-.-.++...+||.++.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 3455778877787777777655 699999998 44443322 223333445555 34566667789999999999999
Q ss_pred eEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC-----CCeEEEEEcCCCCEEEEEeCC-eEEEE
Q 002495 755 CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-----KPIDSVCWDPSGELLASVSED-SVRVW 828 (915)
Q Consensus 755 ~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~-----~~V~si~~spdg~~Las~s~d-~I~iw 828 (915)
.+..+.-....--...++..++.+.....|+++|.++.+....+.... ..++-+.|. +|.+.|-.-.. .|...
T Consensus 122 ~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 122 KIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 988876543333333677889988889999999999887766655321 245667776 56666655554 88888
Q ss_pred ECCCCCCcceEEEec---------------cCCCceEEEEEeCCCCEEEEEEcC
Q 002495 829 TVGSGSEGECVHELS---------------CNGNKFHSCVFHPTYPSLLVIGCY 867 (915)
Q Consensus 829 dl~s~~~~~~i~~~~---------------~~~~~i~~i~~spdg~~l~s~s~d 867 (915)
|..+|. ++..+. ....-...|+++|....|++.|..
T Consensus 201 dp~tG~---V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 201 DPETGK---VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp ETTT-B---EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred eCCCCe---EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 888873 333221 113457899999988877777653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.056 Score=64.64 Aligned_cols=186 Identities=11% Similarity=0.066 Sum_probs=106.0
Q ss_pred CCCCeEEEEEcCCCCeEEEEEe-----CC--CcEEEEEcCCCeeEEEee-cCceEEEEecCCCEEEEEEcC---------
Q 002495 719 HSASVMSLDFHPNKDDLICSCD-----GD--GEIRYWSINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAAE--------- 781 (915)
Q Consensus 719 h~~~V~sl~fsp~~~~ll~s~s-----~D--g~I~iwdl~~~~~~~~~~-~~~~~v~~sp~~~~ll~~~~d--------- 781 (915)
....+.+.+++|++..++++.. .| ..|.+++.... ...... .....-.|+|+++.+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 3346788999999998877662 23 35666665322 222222 235678899998877766533
Q ss_pred ---CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEE---ECCCCCCcce--EEEecc-CCCceEEE
Q 002495 782 ---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVW---TVGSGSEGEC--VHELSC-NGNKFHSC 852 (915)
Q Consensus 782 ---g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iw---dl~s~~~~~~--i~~~~~-~~~~i~~i 852 (915)
+.+.+.+++.++... .....|..+.|+|||..|+....+.|+|- ....+. ... ...+.. -...+..+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCccccc
Confidence 233333444333222 23467999999999998888776666663 322231 111 112222 23335788
Q ss_pred EEeCCCCEEEEEEcCCe--EEEEECCCCcEEEEcc--cCCCeEEEEEeCCCCEEEEEecCCcEE
Q 002495 853 VFHPTYPSLLVIGCYQS--LELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASHDKFVK 912 (915)
Q Consensus 853 ~~spdg~~l~s~s~dg~--I~iwd~~~~~~~~~~~--h~~~V~~l~~spdg~~Lasgs~Dg~I~ 912 (915)
.|..++.. +++..++. |+..++.......+.. ....|.+|+-.++ .|+....+|.+.
T Consensus 503 ~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 503 DWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred eEecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 99999984 45555543 4444554333222222 3567777877763 455556666544
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.24 Score=55.29 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=41.1
Q ss_pred CceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCcEE----EEc-ccCCCeEEEEEeCCCCEEEEEecCCcEE
Q 002495 847 NKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM----TLT-AHEGLIAALAVSTETGYVASASHDKFVK 912 (915)
Q Consensus 847 ~~i~~i~~sp-------dg~~l~s~s~dg~I~iwd~~~~~~~----~~~-~h~~~V~~l~~spdg~~Lasgs~Dg~I~ 912 (915)
..+..+.|-. .+.+|++.-..+.|...++.....+ .+. .....+..|++.|||.++++-+.+|.|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3455556553 3345555555568888888755333 222 3445899999999999988888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.14 Score=58.04 Aligned_cols=88 Identities=20% Similarity=0.325 Sum_probs=57.4
Q ss_pred EEEEcCCCCEEEEEECCCcEEE---EECC-CC----ceeeEecc---CC--CcEEEEEECC-----------CCCEEEEE
Q 002495 640 CCHFSSDGKLLATGGHDKKAVL---WHTD-TL----KSKTNLEE---HS--SLITDVRFSP-----------SMPRLATS 695 (915)
Q Consensus 640 ~lafspdg~~Lasgs~Dg~V~v---wd~~-t~----~~~~~l~~---h~--~~V~~l~fsp-----------dg~~Lasg 695 (915)
+++.++++++||.+..+..|.+ |+.+ .+ .......+ +. ..|+++.|-| |...|++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678999999999987776665 6432 11 11111111 21 5677776633 45689999
Q ss_pred eCCCeEEEEECCCCCceEEEeccCCCCeEEEEEc
Q 002495 696 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 729 (915)
Q Consensus 696 s~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fs 729 (915)
..+|.|++|... +..+..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~--G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN--GVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc--chHHHHHhcCccceEEEEec
Confidence 999999999885 44444444577777777764
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0012 Score=46.18 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=34.3
Q ss_pred eeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 663 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd 663 (915)
+....+..|...|++++|.+++.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.019 Score=52.07 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=67.3
Q ss_pred eEEEEEcC---CC-CEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceE
Q 002495 638 VICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 713 (915)
Q Consensus 638 V~~lafsp---dg-~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~ 713 (915)
|+++++.. || +.|++|+.|..|+||+-+ +.+..+..+ +.|++++-... .+++.+-.+|+|-+|+-.. . +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--R-l 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--R-L 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcc--e-e
Confidence 66666654 43 689999999999999844 556666544 45777776655 5799999999999997753 2 2
Q ss_pred EEeccCCCCeEEEEEcC---CCCeEEEEEeCCCcEE
Q 002495 714 RTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIR 746 (915)
Q Consensus 714 ~~~~~h~~~V~sl~fsp---~~~~ll~s~s~Dg~I~ 746 (915)
...+ ....++++++.. +|..-|++|-.+|.|-
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 223366665543 4444556887788764
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.43 Score=57.81 Aligned_cols=270 Identities=15% Similarity=0.142 Sum_probs=151.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECC--CCceeeEe--ccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc
Q 002495 636 SKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 711 (915)
Q Consensus 636 ~~V~~lafspdg~~Lasgs~Dg~V~vwd~~--t~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~ 711 (915)
..|.-..|--|..+|.++..||.+.-|-++ ++..-..- .--..++.--.|+..++.-+.++.|+-..+|..+. +
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~--k 661 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG--K 661 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC--c
Confidence 456666666678899999999988766544 44332222 22345666667777666555555566666776553 2
Q ss_pred eEEEeccCCCCeEEE-EEcCC-CCeEEEEEeCCCcEEEEEcCCCee--EEEee--cCceEEEEecCCCEEEEEEc-----
Q 002495 712 SLRTFMGHSASVMSL-DFHPN-KDDLICSCDGDGEIRYWSINNGSC--TRVFK--GGTAQMRFQPHLGRYLAAAA----- 780 (915)
Q Consensus 712 ~~~~~~~h~~~V~sl-~fsp~-~~~ll~s~s~Dg~I~iwdl~~~~~--~~~~~--~~~~~v~~sp~~~~ll~~~~----- 780 (915)
.+.+-... ..+..+ .|+.+ ....++++. .+.+++.-++.-.. +++.. .....+++.+..-.+.+.+.
T Consensus 662 Lv~spls~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 662 LVYSPLSL-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEEeccch-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 22211111 111111 12221 122343443 56677776654322 22222 23344555553323332221
Q ss_pred ------C---CeEEEEECCCceEEEEecCC-C---CCeEEEEEcCC-CCEEEEEeC-----------CeEEEEECCCCCC
Q 002495 781 ------E---NVVSILDAETQACRLSLQGH-T---KPIDSVCWDPS-GELLASVSE-----------DSVRVWTVGSGSE 835 (915)
Q Consensus 781 ------d---g~I~i~D~~t~~~~~~l~~h-~---~~V~si~~spd-g~~Las~s~-----------d~I~iwdl~s~~~ 835 (915)
+ ..++++|-.+.+.+...+-. . ..|.++.|..| +.++++|.. +.|.||.+.....
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 25677787777665543321 1 23555568877 567776652 1577777766545
Q ss_pred cceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEcccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002495 836 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 913 (915)
Q Consensus 836 ~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~Dg~I~I 913 (915)
.+.+.+....+....-+.| +|+++ ++-...|++|++.+.+.+ .-..|..++..+...-.+..|+.|.-=++|.+
T Consensus 820 L~~v~e~~v~Gav~aL~~f--ngkll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF--NGKLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeeeccceeehhhh--CCeEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 5555554443332222223 34443 455679999999999666 55578889999999999999999987666654
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.35 Score=51.11 Aligned_cols=178 Identities=15% Similarity=0.117 Sum_probs=111.6
Q ss_pred eEEEEEcCCCCEEEEEECCC--cEEEEECCCCceeeEeccCC-CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEE
Q 002495 638 VICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 714 (915)
Q Consensus 638 V~~lafspdg~~Lasgs~Dg--~V~vwd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~ 714 (915)
.-.+.|..+|.++-+.+.-| .|+.+|+++++......-.. -.--.|+.. +++.....=.++...+||.++ -+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~t-l~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNT-LKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTT-TEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEcccc-ceEEE
Confidence 44678878888888887766 79999999998776554322 122233333 222333334488999999987 55666
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec--------CceEEEEecCCCEEEEEEc-CCeEE
Q 002495 715 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAAA-ENVVS 785 (915)
Q Consensus 715 ~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~--------~~~~v~~sp~~~~ll~~~~-dg~I~ 785 (915)
.+. ..+.=+.|+. ++..++ .++....|+++|..+.+.++.+.- ....+.|. ++.+++-.. ...|.
T Consensus 125 ~~~-y~~EGWGLt~--dg~~Li-~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 125 TFP-YPGEGWGLTS--DGKRLI-MSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEE--SSS--EEEE--CSSCEE-EE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEE
T ss_pred EEe-cCCcceEEEc--CCCEEE-EECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEE
Confidence 664 3456677774 456666 455577899999988877666532 12334444 466666554 67899
Q ss_pred EEECCCceEEEEecC------------C---CCCeEEEEEcCCCCEEEEEeCC
Q 002495 786 ILDAETQACRLSLQG------------H---TKPIDSVCWDPSGELLASVSED 823 (915)
Q Consensus 786 i~D~~t~~~~~~l~~------------h---~~~V~si~~spdg~~Las~s~d 823 (915)
..|..+|+++..+.. + ..-.+.|+|+|....|...+..
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 999999998876521 1 3458899999988866666655
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.044 Score=65.62 Aligned_cols=213 Identities=8% Similarity=0.067 Sum_probs=106.0
Q ss_pred cEEEEECCCCcee--eEeccCCCcEEEEEECCCCCEEEEEeCC------CeEEEEECCCCCceEEEecc---CCCCeEEE
Q 002495 658 KAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGYSLRTFMG---HSASVMSL 726 (915)
Q Consensus 658 ~V~vwd~~t~~~~--~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~I~iWdl~~~~~~~~~~~~---h~~~V~sl 726 (915)
.+..||..+.+-. ..+...... .+++. -++..+++|+.+ ..|..||..+... ..+.. ..... ++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~-~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRF-SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhce-eE
Confidence 5677887654322 222211111 12222 256677777754 3477888876322 11111 11111 22
Q ss_pred EEcCCCCeEEEEEeCCC-----cEEEEEcCCCeeEEE--eecCceEE-EEecCCCEEEEEEcC-----------------
Q 002495 727 DFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRV--FKGGTAQM-RFQPHLGRYLAAAAE----------------- 781 (915)
Q Consensus 727 ~fsp~~~~ll~s~s~Dg-----~I~iwdl~~~~~~~~--~~~~~~~v-~~sp~~~~ll~~~~d----------------- 781 (915)
+.. ++.+++.||.++ .|..||..+.+.... +....... ....++..+++|+.+
T Consensus 348 ~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 348 AVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccc
Confidence 222 355777787654 478899887654332 11111111 122344445555543
Q ss_pred ------CeEEEEECCCceEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC-------eEEEEECCCCCCcceEEEeccCC
Q 002495 782 ------NVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNG 846 (915)
Q Consensus 782 ------g~I~i~D~~t~~~~~--~l~~h~~~V~si~~spdg~~Las~s~d-------~I~iwdl~s~~~~~~i~~~~~~~ 846 (915)
..|..||.++.+... .+...... .+++. -++++.+.|+.+ .|..||..+......+..+....
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCccccc-CcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 257788888764432 22111111 12222 246666666532 36788887622233333333322
Q ss_pred CceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEE
Q 002495 847 NKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTM 881 (915)
Q Consensus 847 ~~i~~i~~spdg~~l~s~s~dg--~I~iwd~~~~~~~ 881 (915)
.....++ -++...++||.++ .+..||..+.+-.
T Consensus 504 ~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 504 SALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ccceeEE--ECCEEEEEeeecceeehhhcCccccccc
Confidence 2222222 2677888888887 7888998887755
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.25 Score=52.31 Aligned_cols=191 Identities=11% Similarity=0.121 Sum_probs=120.8
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccC-CCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 002495 631 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 709 (915)
Q Consensus 631 l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~ 709 (915)
+.+-+..|.++.|+|+.+.|++......-.||=...|..++++.-. -..-..|.|..++.+.++--.+..+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4455566999999999999999888888888877789988887531 233456778878877777777999999888754
Q ss_pred CceEEE---------eccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCe-eE------------EEeecCceEEE
Q 002495 710 GYSLRT---------FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CT------------RVFKGGTAQMR 767 (915)
Q Consensus 710 ~~~~~~---------~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~-~~------------~~~~~~~~~v~ 767 (915)
...+.. ..........++|.+....++ .+-+..-+.||.+.... .+ ..+-..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 332211 111245677899999988777 45556667777665432 11 11223456677
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCceEEEEecCCC---------CCeEEEEEcCCCCEEEEEeCC
Q 002495 768 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSED 823 (915)
Q Consensus 768 ~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~---------~~V~si~~spdg~~Las~s~d 823 (915)
|.+..+.+++-+. ++.+.-.|.... .+..+.-+. .....|+.+++|.+.+++-.+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 8877777666665 455555665543 232222111 123457777777755444333
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0021 Score=44.94 Aligned_cols=38 Identities=37% Similarity=0.590 Sum_probs=34.0
Q ss_pred ceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Q 002495 668 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 668 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWd 705 (915)
+.+..+..|...|.++.|.+++..+++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.69 Score=48.86 Aligned_cols=253 Identities=13% Similarity=0.042 Sum_probs=139.1
Q ss_pred CCCCcccccccCccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---ceeeEeccCCCcEEEEEECC
Q 002495 611 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP 687 (915)
Q Consensus 611 ~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~---~~~~~l~~h~~~V~~l~fsp 687 (915)
..+.++.|+....+..++..+... +--+|+..+ |+++.++..|.-+.++|+.+. .....+......-..++.+
T Consensus 105 ssGL~IvDIS~P~sP~~~~~lnt~-gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS- 180 (370)
T COG5276 105 SSGLRIVDISTPDSPTLIGFLNTD-GYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS- 180 (370)
T ss_pred CCceEEEeccCCCCcceeccccCC-ceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe-
Confidence 346677777776666666665542 344555554 778888887777888888743 2333444444444566665
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCceEEEeccCCC-CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec----C
Q 002495 688 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----G 762 (915)
Q Consensus 688 dg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~-~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~----~ 762 (915)
|++-+.++.|+-+.|-|+.++..++..-.-..+ .+.++..+++.. ++ ...+--|.+-|..+.+....+.. .
T Consensus 181 -Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~--vvy~egvlivd~s~~ssp~~~gsyet~~ 256 (370)
T COG5276 181 -GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YL--VVYDEGVLIVDVSGPSSPTVFGSYETSN 256 (370)
T ss_pred -cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EE--EEcccceEEEecCCCCCceEeeccccCC
Confidence 668888889999999999986655433222223 677777776532 33 23355577778777664444321 1
Q ss_pred ceEE-EEecCCCEEEEEEcCCeEEEEECCCceEEE---EecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcce
Q 002495 763 TAQM-RFQPHLGRYLAAAAENVVSILDAETQACRL---SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGEC 838 (915)
Q Consensus 763 ~~~v-~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~---~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~ 838 (915)
..++ .+.-.+++.+++..+..+-+.|+.+..... .+......-..+... +.++.....+...+.|....+ .
T Consensus 257 p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn~g~vV~~s~~s---~ 331 (370)
T COG5276 257 PVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKNTGAVVDASPPS---M 331 (370)
T ss_pred cccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCCceEEEeCCChh---h
Confidence 1111 234455666666666666666665532111 111111112222222 444444444444455553321 1
Q ss_pred EEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002495 839 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 839 i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~ 876 (915)
.....+....+.++..+-+.+.+.+...++.+.||+..
T Consensus 332 m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 332 MDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred cccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 11111222234445555555677788888888888753
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.018 Score=64.63 Aligned_cols=141 Identities=9% Similarity=0.066 Sum_probs=97.9
Q ss_pred CCCEE-EEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCe-------EEEEEeCCCcEEEEEcCCCee--EE
Q 002495 688 SMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-------LICSCDGDGEIRYWSINNGSC--TR 757 (915)
Q Consensus 688 dg~~L-asgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~-------ll~s~s~Dg~I~iwdl~~~~~--~~ 757 (915)
+.++| .++..-..|+-.|++. ++.+..+.-+.. |.-+.+.|+... -| .|-.|..|+-||.+-... +.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcceee
Confidence 33443 4445556688889987 888888887766 777777776431 23 466789999999884322 11
Q ss_pred E-----eecCc-eEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002495 758 V-----FKGGT-AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 831 (915)
Q Consensus 758 ~-----~~~~~-~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~ 831 (915)
. |.... ..+...-..+++++++.+|.|++||.........+.+-..+|..|..+.+|++|++.+...+.+.++.
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1 11111 11222334589999999999999998544555567778899999999999999998888877676653
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.056 Score=64.61 Aligned_cols=230 Identities=16% Similarity=0.146 Sum_probs=119.0
Q ss_pred cCCCCEEEEEECCC------cEEEEECCCCceeeEecc-CCCcEEEEEECCCCCEEEEEeCC------CeEEEEECCCCC
Q 002495 644 SSDGKLLATGGHDK------KAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPG 710 (915)
Q Consensus 644 spdg~~Lasgs~Dg------~V~vwd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~D------g~I~iWdl~~~~ 710 (915)
+..+.+++.|+.++ .|..||..+..-.....- +...-.++++. ++...++|+.| .++.+||.....
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 33456777777663 677888776533222221 22223344443 45688888888 357788887633
Q ss_pred ceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc-----EEEEEcCCCeeEEE--eecCceEEEEecCCC-EEEEEEcC-
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE-----IRYWSINNGSCTRV--FKGGTAQMRFQPHLG-RYLAAAAE- 781 (915)
Q Consensus 711 ~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~-----I~iwdl~~~~~~~~--~~~~~~~v~~sp~~~-~ll~~~~d- 781 (915)
.. .+..-...-..+....-++.+.++|+.||. |-.||.++.+.... ............-++ .+++|+.+
T Consensus 361 W~--~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 WT--PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred ee--ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 21 111111111112222224667888988865 67788777654322 222223333333334 44455533
Q ss_pred -----CeEEEEECCCceEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeccCCCc
Q 002495 782 -----NVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNK 848 (915)
Q Consensus 782 -----g~I~i~D~~t~~~~~--~l~~h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s~~~~~~i~~~~~~~~~ 848 (915)
..|..||..+.+... .+..-..... ++.. ++.+.+.|+.+ +|..||..+..- ..+.........
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQW-TMVAPMTSPRSA 515 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCce-eEcccCcccccc
Confidence 467889988775433 2222222222 3332 36666666644 378888876421 222212111111
Q ss_pred eEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEE
Q 002495 849 FHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTM 881 (915)
Q Consensus 849 i~~i~~spdg~~l~s~s~dg-----~I~iwd~~~~~~~ 881 (915)
+. ...-++...++|+.|+ +|..||..+.+..
T Consensus 516 ~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 516 VG--VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cc--EEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 11 2223566777777775 7888888777654
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.06 Score=64.36 Aligned_cols=216 Identities=14% Similarity=0.105 Sum_probs=113.6
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCee
Q 002495 688 SMPRLATSSFD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSC 755 (915)
Q Consensus 688 dg~~Lasgs~D------g~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~D------g~I~iwdl~~~~~ 755 (915)
.+.++++|+.+ ..|..||..+.......-......-.++++.. +.++++|+.| .++..||.++.+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCce
Confidence 34466666665 35778888764222111112233344555553 4677889888 3577888888764
Q ss_pred EEE--eecCceEEEEe-cCCCEEEEEEcCC-----eEEEEECCCceEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC--
Q 002495 756 TRV--FKGGTAQMRFQ-PHLGRYLAAAAEN-----VVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED-- 823 (915)
Q Consensus 756 ~~~--~~~~~~~v~~s-p~~~~ll~~~~dg-----~I~i~D~~t~~~~~--~l~~h~~~V~si~~spdg~~Las~s~d-- 823 (915)
... +......+... -++..+++|+.|| .|..||.++.+... .+......+-.+. -+|.+.++|+.+
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGS 439 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCC
Confidence 432 11222223332 3445556666665 67888888764332 2221111222222 247777776643
Q ss_pred -----eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEEcccCCCeEEE
Q 002495 824 -----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHEGLIAAL 893 (915)
Q Consensus 824 -----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg-----~I~iwd~~~~~~~~~~~h~~~V~~l 893 (915)
++..||..+..- ..+........... +..-++...++||.|+ +|..||..+.+...+..-......+
T Consensus 440 ~~~l~sve~YDP~t~~W-~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTW-TLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred ccccceEEEEcCCCCce-eecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 477888876521 11111111111111 2233566677777665 5888999988876543322222222
Q ss_pred EE-eCCCCEEEEEecCCc
Q 002495 894 AV-STETGYVASASHDKF 910 (915)
Q Consensus 894 ~~-spdg~~Lasgs~Dg~ 910 (915)
.+ .-+++..+.|+.||.
T Consensus 517 g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred cEEEECCEEEEEecccCc
Confidence 21 235567777888774
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.62 Score=57.39 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=70.5
Q ss_pred CCEEEEEECCCcEEEEECCCCceeeEeccCCCc--------EEEEEECC----------------CCCEEEEEeCCCeEE
Q 002495 647 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--------ITDVRFSP----------------SMPRLATSSFDKTVR 702 (915)
Q Consensus 647 g~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~--------V~~l~fsp----------------dg~~Lasgs~Dg~I~ 702 (915)
+..|++++.++.|.-.|.++++.+-.+...... +..+.+.. ++.+|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777788889999999999888776543211 22333321 345888899999999
Q ss_pred EEECCCCCceEEEeccCCCCeE-------------EEEEcC--CCCeEEEEEeC----------CCcEEEEEcCCCeeEE
Q 002495 703 VWDADNPGYSLRTFMGHSASVM-------------SLDFHP--NKDDLICSCDG----------DGEIRYWSINNGSCTR 757 (915)
Q Consensus 703 iWdl~~~~~~~~~~~~h~~~V~-------------sl~fsp--~~~~ll~s~s~----------Dg~I~iwdl~~~~~~~ 757 (915)
-.|.++ ++.+..+. ..+.|. .+.-.| .++.+| +++. +|.|+-+|+++|+.+.
T Consensus 274 ALDA~T-Gk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADT-GKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCC-CCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 999998 55554442 111110 011111 123344 4432 6889999999999998
Q ss_pred Eeec
Q 002495 758 VFKG 761 (915)
Q Consensus 758 ~~~~ 761 (915)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 8763
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.84 Score=49.81 Aligned_cols=267 Identities=13% Similarity=0.123 Sum_probs=117.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEC-CCCceeeEec--cC---CCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE--EH---SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~-~t~~~~~~l~--~h---~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~ 708 (915)
...+.+|+|..+..-+|+|. .+.| +.. +-++.-.... .. .....+|.|..+ ..+++ +..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~D- 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTTD- 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEESS-
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEecC-
Confidence 44899999996666666654 5543 332 2232222211 11 224667777643 34444 4455 3333333
Q ss_pred CCceEEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEe---ecCceEEEEecCCCEEEEEEcC
Q 002495 709 PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGTAQMRFQPHLGRYLAAAAE 781 (915)
Q Consensus 709 ~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~-~~~~---~~~~~~v~~sp~~~~ll~~~~d 781 (915)
.+..-..+. .-......+....++ ..+++ +..|.|+. ..+.++. .... .+....+...+++.+++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~-~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELA-GDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT-EEEEE-ETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEE-cCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 344333321 122333444444333 33323 33454332 1222221 1111 2334455566676655555445
Q ss_pred CeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC-CCCC-cceEEEeccCCCceEEEEEeCCCC
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-SGSE-GECVHELSCNGNKFHSCVFHPTYP 859 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~-s~~~-~~~i~~~~~~~~~i~~i~~spdg~ 859 (915)
..+.-||.-...-...-......|.++.|.+++.+.+++..+.|++=+.. ..+. .+.+..+......+..++|.++..
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence 55567776543222222334578999999999887776644477776621 1100 011111222345588999998877
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEc----ccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 860 SLLVIGCYQSLELWNMSENKTMTLT----AHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 860 ~l~s~s~dg~I~iwd~~~~~~~~~~----~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
..++ +..|.| +.....++.-... .-...++.|.|..+.+-+|. +.||.|.-|
T Consensus 246 ~wa~-gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 246 IWAV-GGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp EEEE-ESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred EEEE-eCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 6554 444533 3455566554322 23556888998766555554 578887665
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.41 Score=51.14 Aligned_cols=184 Identities=12% Similarity=0.085 Sum_probs=100.7
Q ss_pred CeEEEEEcCCCCeEEEEEeCC--CcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEE-ECCCceEE-EE
Q 002495 722 SVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL-DAETQACR-LS 797 (915)
Q Consensus 722 ~V~sl~fsp~~~~ll~s~s~D--g~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~-D~~t~~~~-~~ 797 (915)
.+.+.++++++..+.+....+ ..|+++...................|++++...++...+...+++ +..++... ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 688899999998777666334 445555443222222122345667899995555555555565665 33333221 11
Q ss_pred ecC--CCCCeEEEEEcCCCCEEEEEe----CCeEEEEECCCCCCc------ceEEEeccCCCceEEEEEeCCCCEEEEEE
Q 002495 798 LQG--HTKPIDSVCWDPSGELLASVS----EDSVRVWTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIG 865 (915)
Q Consensus 798 l~~--h~~~V~si~~spdg~~Las~s----~d~I~iwdl~s~~~~------~~i~~~~~~~~~i~~i~~spdg~~l~s~s 865 (915)
+.. ....|..+.++|||..++... ...|.|--+...... ..+.........+..+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 221 122899999999999777666 336766665433222 11222223356789999999998777766
Q ss_pred cCCe-EEE-EECCCCcEEEEcccCCCeEEEEEeCCCCEEEEE
Q 002495 866 CYQS-LEL-WNMSENKTMTLTAHEGLIAALAVSTETGYVASA 905 (915)
Q Consensus 866 ~dg~-I~i-wd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 905 (915)
..+. +.. +....+....+..-...+..++...+...++..
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t 226 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVT 226 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEE
Confidence 5542 333 444443333332333333333333333344433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.26 Score=52.13 Aligned_cols=186 Identities=15% Similarity=0.204 Sum_probs=108.0
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec----CceEEEEecCCCEEEEEEcCCeEEEEECCCc
Q 002495 717 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVSILDAETQ 792 (915)
Q Consensus 717 ~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~----~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~ 792 (915)
.+....|.++.|+|+.+.|+++.. ...-.+|=..+|..++++.- ....+.+.-.+.+.++--.+..++++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n-~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTN-KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecC-CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 455566999999999888885554 45555565566888887653 3355667666555555555778877766544
Q ss_pred eEE-------EEec--CC-CCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccC-------CCceEEEEE
Q 002495 793 ACR-------LSLQ--GH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVF 854 (915)
Q Consensus 793 ~~~-------~~l~--~h-~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~-------~~~i~~i~~ 854 (915)
..+ ..+. .+ ......++|++....|+..-+. -+.||.+........++....+ -..+..+.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 221 1121 12 5668899999988877777666 5555555433211122211111 123667778
Q ss_pred eCCCCE-EEEEEcCCeEEEEECCCCcEE--EEcccCC-------CeEEEEEeCCCCEEE
Q 002495 855 HPTYPS-LLVIGCYQSLELWNMSENKTM--TLTAHEG-------LIAALAVSTETGYVA 903 (915)
Q Consensus 855 spdg~~-l~s~s~dg~I~iwd~~~~~~~--~~~~h~~-------~V~~l~~spdg~~La 903 (915)
++.... ++.+.+++.|.-.|......- .+.+... ....|+...+|.+.+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI 299 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI 299 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence 875544 444555667777777655322 2222111 234677777775433
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=1.5 Score=49.06 Aligned_cols=268 Identities=10% Similarity=0.061 Sum_probs=130.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEe----ccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL----EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 710 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l----~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~ 710 (915)
...+++|+|..+.+-+|+|. +|.|..= .+.++.-... ......+.++.|..+ ..+++ +..+. ||..++.+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCCC
Confidence 55799999986666676664 5544321 1222222211 112334778888643 34444 44554 33333333
Q ss_pred ceEEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----ecCceEEEEecCCCEEEEEEcCCe
Q 002495 711 YSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAAENV 783 (915)
Q Consensus 711 ~~~~~~~---~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~----~~~~~~v~~sp~~~~ll~~~~dg~ 783 (915)
+.-..+. ........+..... ..++ .++..|.|..=+ +.++.-..+ .+....+.+.+++ .+++.+..|.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~-~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g~~G~ 194 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP-GTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVSSRGN 194 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC-Ccce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC-eEEEEeCCce
Confidence 3322221 01111222222222 2233 233344443221 122211111 2334566677764 5556666665
Q ss_pred EEEE-ECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEe-ccCCCceEEEEEeCCCCEE
Q 002495 784 VSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPSL 861 (915)
Q Consensus 784 I~i~-D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~-~~~~~~i~~i~~spdg~~l 861 (915)
+..- |.....-......-...++++.+.+++.+++++..+.+++=....+.....+..- ......+..+.+.+++. +
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~ 273 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-I 273 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-E
Confidence 5542 2221112222233456789999999999887776655432223333222221111 11224577888988776 5
Q ss_pred EEEEcCCeEEEEECCCCcEEEE----cccCCCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 862 LVIGCYQSLELWNMSENKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 862 ~s~s~dg~I~iwd~~~~~~~~~----~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
++++.+|.|. .....++.... ..-....+.+.|..+++.+++ +..|.|..|+
T Consensus 274 ~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 274 WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 5566667555 34455554422 122346888888877766654 5677776654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.07 Score=48.40 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=63.1
Q ss_pred EEEEEECC---CC-CEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002495 680 ITDVRFSP---SM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 755 (915)
Q Consensus 680 V~~l~fsp---dg-~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~ 755 (915)
|+++++.. || +.|++||.|..||||+-+. .+..+. ..+.|++|+-...+ .|+.+-.+|+|-+|+-.....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcceee
Confidence 55666544 33 4799999999999998653 455554 45668888777653 466788899999987543222
Q ss_pred EEEeecCceEEEEecCC----CEEEEEEcCCeEE
Q 002495 756 TRVFKGGTAQMRFQPHL----GRYLAAAAENVVS 785 (915)
Q Consensus 756 ~~~~~~~~~~v~~sp~~----~~ll~~~~dg~I~ 785 (915)
...-+..+.++.+..-. ..|+++-.+|.|-
T Consensus 76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22223334444443332 2677777777764
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.15 Score=53.34 Aligned_cols=169 Identities=18% Similarity=0.194 Sum_probs=110.2
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEc-CC-eEEEEECCCceEEEEecCCCCC--
Q 002495 729 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-EN-VVSILDAETQACRLSLQGHTKP-- 804 (915)
Q Consensus 729 sp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~-dg-~I~i~D~~t~~~~~~l~~h~~~-- 804 (915)
..|+.+.+++.+.+|.|..- ..+......+.++|...+-++... -| ...+||........++...+..
T Consensus 44 ~~dgs~g~a~~~eaGk~v~~--------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf 115 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVFA--------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF 115 (366)
T ss_pred ccCCceeEEEEccCCceeee--------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence 34555556566655554321 112233445677777665544443 33 5677888877555444332221
Q ss_pred eEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEc------C-----
Q 002495 805 IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------Y----- 867 (915)
Q Consensus 805 V~si~~spdg~~Las~s~d------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~------d----- 867 (915)
.-.-+|++||.+|+..-.| .|-|||.+ .....+.++..|+-....+.|.+||+.++++.. |
T Consensus 116 yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~ 193 (366)
T COG3490 116 YGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTE 193 (366)
T ss_pred ecccccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccc
Confidence 2234799999999987655 48999998 345778888889989999999999999888754 1
Q ss_pred -------CeEEEEECCCCcEE---EEc--ccCCCeEEEEEeCCCCEEEEEec
Q 002495 868 -------QSLELWNMSENKTM---TLT--AHEGLIAALAVSTETGYVASASH 907 (915)
Q Consensus 868 -------g~I~iwd~~~~~~~---~~~--~h~~~V~~l~~spdg~~Lasgs~ 907 (915)
-++.+.|..++.++ ++. -+.-.|+.++..+||.+++.|-.
T Consensus 194 lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 194 LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 14556666666655 333 45567899999999987776643
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.15 Score=56.54 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=87.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce----eeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCC
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 710 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~----~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~ 710 (915)
.++|.+|.||+|.+.||+--.|++|.+++....+. ..+.+..+..|...+|+.+ .-+|.....| |.+|-+....
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek 143 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK 143 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence 56899999999999999999999999999742222 2233445566999999866 5666666555 7888877767
Q ss_pred ceEEEeccCCCCeEEEEEcCCCCeEEEEEe-CCCcEEEEEcCCCee
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSC 755 (915)
Q Consensus 711 ~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s-~Dg~I~iwdl~~~~~ 755 (915)
..++..+.|...|....|+++..-++.+.+ ..+++.=+-++++..
T Consensus 144 rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 778888899999999999998766554444 444554455555443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.026 Score=68.29 Aligned_cols=100 Identities=20% Similarity=0.290 Sum_probs=72.0
Q ss_pred CCEEEEEECCCcEEEEECCCC-ceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEE
Q 002495 647 GKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 725 (915)
Q Consensus 647 g~~Lasgs~Dg~V~vwd~~t~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~s 725 (915)
+..++.|+..|.|...|+... .....-+.-.++|++++|+.+|+.++.|-.+|.|.+||+.. +..++.+..|..+++.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccce
Confidence 457888888899998887642 22223334567899999999999999999999999999998 6777777777666555
Q ss_pred EEE---cCCCCeEEEEEeCCCcEEEEEc
Q 002495 726 LDF---HPNKDDLICSCDGDGEIRYWSI 750 (915)
Q Consensus 726 l~f---sp~~~~ll~s~s~Dg~I~iwdl 750 (915)
+-+ ..++. .+++++..|. +|.+
T Consensus 178 vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 543 33333 4557766665 5554
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0024 Score=64.59 Aligned_cols=138 Identities=14% Similarity=0.056 Sum_probs=78.4
Q ss_pred EEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee-EEEee---cCceE-E
Q 002495 692 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK---GGTAQ-M 766 (915)
Q Consensus 692 Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~-~~~~~---~~~~~-v 766 (915)
|..-+.||.|+-++++.-....+...-|......+.+. . -+++|+.+|.|++|+..-... ...+. ..+.+ +
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~---~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTAS---A-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeecccC---c-eEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 44446688888887764322222222222221112222 2 345788899999998873211 11111 11111 1
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC-CCeEEEEEcCCCCEEEEE--eCC-eEEEEECCCC
Q 002495 767 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASV--SED-SVRVWTVGSG 833 (915)
Q Consensus 767 ~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~-~~V~si~~spdg~~Las~--s~d-~I~iwdl~s~ 833 (915)
....++....+++.++.|+.|++.-.+.+.....|. .++........+++|++. +.+ .++.|++...
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 222233467778889999999999888777666676 555555555556666666 555 6777777543
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.33 Score=49.50 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=88.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCC---------CeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEE
Q 002495 677 SSLITDVRFSPSMPRLATSSFD---------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRY 747 (915)
Q Consensus 677 ~~~V~~l~fspdg~~Lasgs~D---------g~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~i 747 (915)
....++-..+|+|++++-.-.| |.++.|-... .+..+...-.--+.|+|..+.+.+.++-+.+-+|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h---~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH---QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC---CceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 3445666778999884433222 4455554432 122222222334568999888877778888888988
Q ss_pred EE--cCCCee-----EEEeec-------CceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcC
Q 002495 748 WS--INNGSC-----TRVFKG-------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 812 (915)
Q Consensus 748 wd--l~~~~~-----~~~~~~-------~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~sp 812 (915)
|| ..+|.. +..++. ....+++.-++..++++-..++|..+|..+++.+.+++-....|+|+||--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 88 555532 222221 112355666777888888899999999999999999998889999999974
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=2.1 Score=48.55 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=87.8
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeeEeccC--CCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCC-C
Q 002495 645 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS-A 721 (915)
Q Consensus 645 pdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~-~ 721 (915)
-+| .++++..||.|.-.|.++++.+.....- ...+.+-.+..+| .|+.++.++.++.+|.++ +..+..+.... .
T Consensus 67 ~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~-G~~~W~~~~~~~~ 143 (370)
T COG1520 67 GDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDAST-GTLVWSRNVGGSP 143 (370)
T ss_pred eCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCC-CcEEEEEecCCCe
Confidence 344 4455577888888888888765433322 1233333333356 488888899888888875 55555555444 1
Q ss_pred CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCce-E--EE--EecCCCEEEEEEc--CCeEEEEECCCceE
Q 002495 722 SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-Q--MR--FQPHLGRYLAAAA--ENVVSILDAETQAC 794 (915)
Q Consensus 722 ~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~-~--v~--~sp~~~~ll~~~~--dg~I~i~D~~t~~~ 794 (915)
.+..-.+..++ .++.++.++.+...|..+++.+..+..... . +. .....+.++.+.. ++.+.-+|.+++..
T Consensus 144 ~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 144 YYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred EEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence 12222222222 333444789999999998888776544321 1 11 1123455666655 66788888888877
Q ss_pred EEEe
Q 002495 795 RLSL 798 (915)
Q Consensus 795 ~~~l 798 (915)
+...
T Consensus 222 ~w~~ 225 (370)
T COG1520 222 KWSQ 225 (370)
T ss_pred eeee
Confidence 7664
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.18 Score=57.17 Aligned_cols=42 Identities=10% Similarity=0.046 Sum_probs=33.6
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECC
Q 002495 645 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 687 (915)
Q Consensus 645 pdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fsp 687 (915)
+|...+++|..+|.|++|.. +|..+..-.-|.++|..|.+..
T Consensus 77 ~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 77 PDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred CCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 45679999999999999985 6666666667888888888754
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.4 Score=49.92 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=58.6
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-cEEEEECC--CCc--eeeEeccCCCcEEEEEECCCCCEEEEEeCCC
Q 002495 636 SKVICCHFSSDGKLLATGG-----------HDK-KAVLWHTD--TLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDK 699 (915)
Q Consensus 636 ~~V~~lafspdg~~Lasgs-----------~Dg-~V~vwd~~--t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 699 (915)
.....|+|.++|+++++-. ..+ .|.+++-. .++ ....+.......+.|+|.+++ |++++.+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4678899999998777653 223 67777643 233 234444444557889999888 44455554
Q ss_pred eEEEEECCCCC----c--eE-EEecc----CCCCeEEEEEcCCCCeEEEEE
Q 002495 700 TVRVWDADNPG----Y--SL-RTFMG----HSASVMSLDFHPNKDDLICSC 739 (915)
Q Consensus 700 ~I~iWdl~~~~----~--~~-~~~~~----h~~~V~sl~fsp~~~~ll~s~ 739 (915)
.+++.|.+..+ . .+ ..+.. +...+..++|.|++..++..+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 44444554321 1 11 12222 134467889999876555333
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.48 E-value=3.4 Score=50.50 Aligned_cols=240 Identities=13% Similarity=0.022 Sum_probs=121.0
Q ss_pred CCCeEEEEEcC-C---CCEEEEEE---CCCcEEEEECCCC---ceeeEeccCCCcEEEEE--ECCC-CCEEEEEeCCCeE
Q 002495 635 TSKVICCHFSS-D---GKLLATGG---HDKKAVLWHTDTL---KSKTNLEEHSSLITDVR--FSPS-MPRLATSSFDKTV 701 (915)
Q Consensus 635 ~~~V~~lafsp-d---g~~Lasgs---~Dg~V~vwd~~t~---~~~~~l~~h~~~V~~l~--fspd-g~~Lasgs~Dg~I 701 (915)
-++|.+++.-. + +.-++|++ .||+++|..-.-+ -....+.+ -..++.++ +.++ ..+|+.+- -+.-
T Consensus 353 LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf-~~eT 430 (1096)
T KOG1897|consen 353 LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSF-ISET 430 (1096)
T ss_pred ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEe-ccce
Confidence 34777776644 2 24555554 5899999864311 11223344 44566776 4442 22555543 3334
Q ss_pred EEEECCCCCceEEEeccCCCCeEEEEEcCC-CCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEc
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~-~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~ 780 (915)
++..+... .......+.......+..+.- ++.++=.. ...||+++-..........+..+....+.+...+++++.
T Consensus 431 rvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT--s~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~ 507 (1096)
T KOG1897|consen 431 RVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVT--SNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGG 507 (1096)
T ss_pred EEEEEccc-eEEeccccccccCceEEEEccCCceEEEEe--cccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecC
Confidence 55555532 222222222333333333321 22222111 345677665411111222334444455555567777777
Q ss_pred CCeEEEEECCCceEEEEe-cCCCCCeEEEEEcCCC------CEEEEEeCC--eEEEEECCCCCCcceEEEeccC--CCce
Q 002495 781 ENVVSILDAETQACRLSL-QGHTKPIDSVCWDPSG------ELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKF 849 (915)
Q Consensus 781 dg~I~i~D~~t~~~~~~l-~~h~~~V~si~~spdg------~~Las~s~d--~I~iwdl~s~~~~~~i~~~~~~--~~~i 849 (915)
++.+...++......... ...+..|.|+.++|-| .+++.|..+ .+.+.-+.+. ...+...+... ...|
T Consensus 508 ~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~-~~~~~~~l~~~~iPRSI 586 (1096)
T KOG1897|consen 508 GLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL-ILITHEQLSGEIIPRSI 586 (1096)
T ss_pred ccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc-ceeeeeccCCCccchhe
Confidence 777777777766522111 2235679999999742 267777766 3333333222 11111112221 2234
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcE
Q 002495 850 HSCVFHPTYPSLLVIGCYQSLELW--NMSENKT 880 (915)
Q Consensus 850 ~~i~~spdg~~l~s~s~dg~I~iw--d~~~~~~ 880 (915)
.-..|-.|..+|+++..||.+.-| |..++..
T Consensus 587 l~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 587 LLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred eeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 555666678899999999977655 5555543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.3 Score=49.56 Aligned_cols=186 Identities=17% Similarity=0.180 Sum_probs=111.3
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEEC----CCCCE--EEEEeC-C---CeEEEEECCCCCceEE
Q 002495 645 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS----PSMPR--LATSSF-D---KTVRVWDADNPGYSLR 714 (915)
Q Consensus 645 pdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fs----pdg~~--Lasgs~-D---g~I~iWdl~~~~~~~~ 714 (915)
|...+|+....++-+.+||++ ++.+..+.. +.++.|..- -+++. |++++. + .+|++|.++.....+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 344578888888999999986 445555542 233333321 13432 444443 2 4799998874333344
Q ss_pred Eecc-------CCCCeEEEEEc--C-CCCeEEEEEeCCCcEEEEEcC---CC----eeEEEeec--CceEEEEecCCCEE
Q 002495 715 TFMG-------HSASVMSLDFH--P-NKDDLICSCDGDGEIRYWSIN---NG----SCTRVFKG--GTAQMRFQPHLGRY 775 (915)
Q Consensus 715 ~~~~-------h~~~V~sl~fs--p-~~~~ll~s~s~Dg~I~iwdl~---~~----~~~~~~~~--~~~~v~~sp~~~~l 775 (915)
.+.. ....++.+|+. + ++..+++....+|.+..|.+. .+ +.++.|.. .+..|......+.+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3332 12347778874 3 356677788889999888775 23 35677764 45667788888999
Q ss_pred EEEEcCCeEEEEECCC-----ceEEEEecC--CCCCeEEEEEc--CCCC-EEEEEeCC--eEEEEECCCC
Q 002495 776 LAAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWD--PSGE-LLASVSED--SVRVWTVGSG 833 (915)
Q Consensus 776 l~~~~dg~I~i~D~~t-----~~~~~~l~~--h~~~V~si~~s--pdg~-~Las~s~d--~I~iwdl~s~ 833 (915)
+++-.+.-|.-|+.+- +..+....+ ....|..|++- .+++ ||++.+.+ +..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999998862 233333322 34567777774 3444 67766665 8999998754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.24 Score=59.38 Aligned_cols=171 Identities=6% Similarity=-0.007 Sum_probs=84.7
Q ss_pred CCeEEEEEeCC------CcEEEEEcCCCeeEEEe--ecCc-eEEEEecCCCEEEEEEcCC-----eEEEEECCCceEEE-
Q 002495 732 KDDLICSCDGD------GEIRYWSINNGSCTRVF--KGGT-AQMRFQPHLGRYLAAAAEN-----VVSILDAETQACRL- 796 (915)
Q Consensus 732 ~~~ll~s~s~D------g~I~iwdl~~~~~~~~~--~~~~-~~v~~sp~~~~ll~~~~dg-----~I~i~D~~t~~~~~- 796 (915)
++.+++.||.+ ..+..||..+......- .... .......++..+++|+.++ .+.+||.++.+...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 35577777753 34778898877543221 1111 1122333445555666543 58889988764332
Q ss_pred -EecCCCCCeEEEEEcCCCCEEEEEeCC------------------------eEEEEECCCCCCcceEEEeccCCCceEE
Q 002495 797 -SLQGHTKPIDSVCWDPSGELLASVSED------------------------SVRVWTVGSGSEGECVHELSCNGNKFHS 851 (915)
Q Consensus 797 -~l~~h~~~V~si~~spdg~~Las~s~d------------------------~I~iwdl~s~~~~~~i~~~~~~~~~i~~ 851 (915)
.+.........+.+ +|++.+.|+.+ .|..||..+..- ..+..+.. .....
T Consensus 383 ~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-~~v~~m~~--~r~~~ 457 (557)
T PHA02713 383 PDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-ETLPNFWT--GTIRP 457 (557)
T ss_pred CCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE-eecCCCCc--ccccC
Confidence 22211111222222 47766666542 366777765421 11111111 11111
Q ss_pred EEEeCCCCEEEEEEcC------CeEEEEECCC-CcEEEEc---ccCCCeEEEEEeCCCCEEEEEecCC
Q 002495 852 CVFHPTYPSLLVIGCY------QSLELWNMSE-NKTMTLT---AHEGLIAALAVSTETGYVASASHDK 909 (915)
Q Consensus 852 i~~spdg~~l~s~s~d------g~I~iwd~~~-~~~~~~~---~h~~~V~~l~~spdg~~Lasgs~Dg 909 (915)
.+..-++...++||.+ ..|..||..+ .+...+. ........++ -++++.++|+.||
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~ 523 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYES 523 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecc
Confidence 2223345666666654 2478899987 5543222 2222222222 3777888999888
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.7 Score=45.61 Aligned_cols=236 Identities=13% Similarity=0.047 Sum_probs=145.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEE
Q 002495 636 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 715 (915)
Q Consensus 636 ~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~ 715 (915)
..-..|+-.+||..-+++...+.|--.|-.+++....--+....-..|..-||+..-++-+.. -|.-.|-++. .+..
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~--evt~ 138 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTL--EVTR 138 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCccc--ceEE
Confidence 345678889999999999888888888988988777766666667788888988776664433 3444555442 2222
Q ss_pred ec----cCCCCeEEEEEcCCCCeEEEEEeC---------CCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCC
Q 002495 716 FM----GHSASVMSLDFHPNKDDLICSCDG---------DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 782 (915)
Q Consensus 716 ~~----~h~~~V~sl~fsp~~~~ll~s~s~---------Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg 782 (915)
|. ..........|.+.|...| ++.. .+.|++|+...+ .....+|..|++...++.-.++
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWF-t~q~G~yGrLdPa~~~i~vfpaPqG-------~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWF-TGQIGAYGRLDPARNVISVFPAPQG-------GGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred eecccccCCCcccceeeCCCccEEE-eeccccceecCcccCceeeeccCCC-------CCCcceEECCCCcEEEEecccc
Confidence 22 2235567788888876444 5542 123444443322 2456789999999988888888
Q ss_pred eEEEEECCCceEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC
Q 002495 783 VVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 859 (915)
Q Consensus 783 ~I~i~D~~t~~~~~~--l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~ 859 (915)
.|...|..++..... -.......+.+--+|-|..-++.... .+..||-.... -....+.+....-.++.+...++
T Consensus 211 aiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 211 AIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred ceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCc
Confidence 888888877632211 11112334455556677766665444 67777664432 22233444444455666666665
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEc
Q 002495 860 SLLVIGCYQSLELWNMSENKTMTLT 884 (915)
Q Consensus 860 ~l~s~s~dg~I~iwd~~~~~~~~~~ 884 (915)
..++-...+.|.-||-++.....+.
T Consensus 289 VW~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 289 VWLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred EEeeccccCceeecCcccceEEEec
Confidence 5554455566777776665544443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0016 Score=76.53 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=77.4
Q ss_pred eEeecCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECC--CCceeeEec-----cCCCcEEEEEECC---CCCEEEEEeC
Q 002495 629 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTNLE-----EHSSLITDVRFSP---SMPRLATSSF 697 (915)
Q Consensus 629 ~~l~~H~~~V~~lafsp-dg~~Lasgs~Dg~V~vwd~~--t~~~~~~l~-----~h~~~V~~l~fsp---dg~~Lasgs~ 697 (915)
..+++..+.|-.++|-. +...++ -.-|.+.|||++ .|+....+. .....+.-|.|.| +..++.++-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 34567778888888854 222222 234678999987 454433332 2334445566655 5667777778
Q ss_pred CCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC
Q 002495 698 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 753 (915)
Q Consensus 698 Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~ 753 (915)
+++|++..++.. ....+.+|...++.++|...|-.+|..-+-||++..|-+..|
T Consensus 204 ~~~i~lL~~~ra--~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 204 GGEIRLLNINRA--LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred CCceeEeeechH--HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 899998887752 235666799999999888776555656566666666655444
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=3.2 Score=47.32 Aligned_cols=110 Identities=12% Similarity=0.108 Sum_probs=67.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcc--eEEEecc--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002495 801 HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE--CVHELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 801 h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~--~i~~~~~--~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~ 876 (915)
....+..+.|.+++.+++++..+.+ +|....+.... .+.+... ....+..+.|.+++. +++++..|.|.+. ..
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s-~D 355 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRS-TD 355 (398)
T ss_pred CccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEe-CC
Confidence 3456889999999998887765543 33333332111 2233222 224588888887766 5666677766655 34
Q ss_pred CCcEEEE----cccCCCeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 877 ENKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 877 ~~~~~~~----~~h~~~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
.++.... ..-...++.+.|..+++.+++| .+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 5554422 2334678899998877666655 67877655
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.20 E-value=3.2 Score=47.36 Aligned_cols=224 Identities=11% Similarity=0.145 Sum_probs=120.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCce---EEEeccCCCCeEEEEEc---CCCCeEEEEEeCCCcEEEEEcCCC--e-----
Q 002495 688 SMPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFH---PNKDDLICSCDGDGEIRYWSINNG--S----- 754 (915)
Q Consensus 688 dg~~Lasgs~Dg~I~iWdl~~~~~~---~~~~~~h~~~V~sl~fs---p~~~~ll~s~s~Dg~I~iwdl~~~--~----- 754 (915)
+...|++|+.+|.++||+....+.. +..-..-..+|..|..- +....+.++.-.-..|.||.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 3458999999999999998653311 22222345677777653 222222223345677888877321 1
Q ss_pred ---eEEEe----ecCceEEEEecCC-----CEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeC
Q 002495 755 ---CTRVF----KGGTAQMRFQPHL-----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 822 (915)
Q Consensus 755 ---~~~~~----~~~~~~v~~sp~~-----~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~ 822 (915)
....+ ......+++-+-+ ..+.+=+.||.+.+|+-+.....+.+.. .---..++|.+.-+.|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 11111 1222334443333 3556667799999999887665555544 111234577787888888888
Q ss_pred C-eEEEEECCCC--------------------CCcceEEEeccCCCceEEEE---EeCCCCEEEEEEcCCeEEEEECCCC
Q 002495 823 D-SVRVWTVGSG--------------------SEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGCYQSLELWNMSEN 878 (915)
Q Consensus 823 d-~I~iwdl~s~--------------------~~~~~i~~~~~~~~~i~~i~---~spdg~~l~s~s~dg~I~iwd~~~~ 878 (915)
+ .|..|....- +....-..+.. +..+..+. ++.....|++-+ .+.+.+.+.. |
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G 271 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-G 271 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-C
Confidence 7 8888875321 11111122222 22333333 333333444444 3556666653 4
Q ss_pred cEEEEcccCCCeEEEE-Ee----CCC---CEEEEEecCCcEEEcC
Q 002495 879 KTMTLTAHEGLIAALA-VS----TET---GYVASASHDKFVKLWK 915 (915)
Q Consensus 879 ~~~~~~~h~~~V~~l~-~s----pdg---~~Lasgs~Dg~I~IWd 915 (915)
.+...+..+....|++ |. .++ ..++.+++++.+.||+
T Consensus 272 ~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 272 SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 4443333333333332 21 122 2488889999999874
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.19 E-value=2.5 Score=46.10 Aligned_cols=220 Identities=13% Similarity=0.121 Sum_probs=104.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEecc--C---CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002495 677 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--H---SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 751 (915)
Q Consensus 677 ~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~--h---~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~ 751 (915)
...+.+|.|..+..-+++|. .+. |+...+.++.-..... . .....+|.|.. ...+++| ..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESS
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecC
Confidence 45789999996555566654 453 3444443433222111 1 12366777764 3344444 344 3344444
Q ss_pred CCeeEEEe------ecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-e
Q 002495 752 NGSCTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 824 (915)
Q Consensus 752 ~~~~~~~~------~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~ 824 (915)
.++.-..+ .+....+....+ +..++++..|.|+.-.-.-..-..........+..+..++||.+++++..+ .
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGD-GSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEET-TEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 44322221 222222333333 234444444544332222122233334455778889999999999999888 5
Q ss_pred EEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEE-CCCCcEEE---Ec--ccCCCeEEEEEeCC
Q 002495 825 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN-MSENKTMT---LT--AHEGLIAALAVSTE 898 (915)
Q Consensus 825 I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd-~~~~~~~~---~~--~h~~~V~~l~~spd 898 (915)
+.-||--.. .-..+ -......|..+.|.+++...+ ....+.|++=+ ....+... .. ...-.+..++|.++
T Consensus 168 ~~s~~~G~~--~w~~~-~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 168 YSSWDPGQT--TWQPH-NRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EEEE-TT-S--S-EEE-E--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred EEEecCCCc--cceEE-ccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 667775321 11112 222367899999999977555 45888888887 22222221 11 22334889999998
Q ss_pred CCEEEEEecC
Q 002495 899 TGYVASASHD 908 (915)
Q Consensus 899 g~~Lasgs~D 908 (915)
+...++|+..
T Consensus 244 ~~~wa~gg~G 253 (302)
T PF14870_consen 244 NEIWAVGGSG 253 (302)
T ss_dssp S-EEEEESTT
T ss_pred CCEEEEeCCc
Confidence 8887766544
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.17 E-value=2.4 Score=45.48 Aligned_cols=197 Identities=16% Similarity=0.139 Sum_probs=112.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECC-------CCceeeEecc-----CCCcEEEEEECCCCC------------EE
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEE-----HSSLITDVRFSPSMP------------RL 692 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~-------t~~~~~~l~~-----h~~~V~~l~fspdg~------------~L 692 (915)
.-+.|+|+|.+.+-++....++..+||.. ....+.++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888888888999999986 1123334432 234678888875322 36
Q ss_pred EEEeCCCeEEEEECCCCCc----eEEEec-cCCCCe-EEEEEcCC--CCeEEEEEeCCCcEEEEEcCCCeeE--EEeecC
Q 002495 693 ATSSFDKTVRVWDADNPGY----SLRTFM-GHSASV-MSLDFHPN--KDDLICSCDGDGEIRYWSINNGSCT--RVFKGG 762 (915)
Q Consensus 693 asgs~Dg~I~iWdl~~~~~----~~~~~~-~h~~~V-~sl~fsp~--~~~ll~s~s~Dg~I~iwdl~~~~~~--~~~~~~ 762 (915)
+.+++||+|.-|.-.-... .+..+. .....| ..+++... +..|.++--..++|.+||-.-.+.. ..|...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 8889999999998532111 122222 112333 34555433 4556655556789999985433221 111111
Q ss_pred c-----eEEEEecCCCEEEE--------------EEcCCeEEEEECCCceEEEEec--CCCCCeEEEEEcC------CCC
Q 002495 763 T-----AQMRFQPHLGRYLA--------------AAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP------SGE 815 (915)
Q Consensus 763 ~-----~~v~~sp~~~~ll~--------------~~~dg~I~i~D~~t~~~~~~l~--~h~~~V~si~~sp------dg~ 815 (915)
. ....+..-++.+++ +..-|.|.+||..- ..+..+. +.-..-..|+..| .|.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 1 11111111233332 23346899998864 4444442 2223344566654 466
Q ss_pred EEEEEeCC-eEEEEECCCCC
Q 002495 816 LLASVSED-SVRVWTVGSGS 834 (915)
Q Consensus 816 ~Las~s~d-~I~iwdl~s~~ 834 (915)
+|+.--.| +|.+||..++.
T Consensus 263 lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eEEeecCCceeEEecCCCCc
Confidence 77766666 99999998774
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.024 Score=65.03 Aligned_cols=78 Identities=22% Similarity=0.255 Sum_probs=65.7
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeE-EEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeE
Q 002495 678 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 756 (915)
Q Consensus 678 ~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~-sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~ 756 (915)
..|.-+.|+|.-..||++..+|.|.++.+. -..+.++.-|...++ +++|.|||+ +|+.|-.||+|++.|++++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCce
Confidence 457889999999999999999999998887 355666665667777 999999965 7779999999999999998876
Q ss_pred EE
Q 002495 757 RV 758 (915)
Q Consensus 757 ~~ 758 (915)
..
T Consensus 98 ~~ 99 (665)
T KOG4640|consen 98 VS 99 (665)
T ss_pred ec
Confidence 65
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.10 E-value=3.4 Score=46.66 Aligned_cols=218 Identities=10% Similarity=0.038 Sum_probs=103.4
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCC---ceEEEecc---CC----CCeEEEEEcCCCCeEEEEE--eC----CCcEEEEEc
Q 002495 688 SMPRLATSS-FDKTVRVWDADNPG---YSLRTFMG---HS----ASVMSLDFHPNKDDLICSC--DG----DGEIRYWSI 750 (915)
Q Consensus 688 dg~~Lasgs-~Dg~I~iWdl~~~~---~~~~~~~~---h~----~~V~sl~fsp~~~~ll~s~--s~----Dg~I~iwdl 750 (915)
+.++|+..+ ..+.|+|+|+.+.. +..+++.. +. ..-..+...|+|+.+| ++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 456777777 57889999998532 22333332 11 1222344456665444 43 22 356888998
Q ss_pred CCCeeEEEeecCc------eEEEEecCCCEEEEEEc--------------------CCeEEEEECCCceEEEEecCCCC-
Q 002495 751 NNGSCTRVFKGGT------AQMRFQPHLGRYLAAAA--------------------ENVVSILDAETQACRLSLQGHTK- 803 (915)
Q Consensus 751 ~~~~~~~~~~~~~------~~v~~sp~~~~ll~~~~--------------------dg~I~i~D~~t~~~~~~l~~h~~- 803 (915)
++.+.+...+... ..+-|.|..+.++++.. ..++.+||+.+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 8888777765422 34667887777777543 34899999999999988875432
Q ss_pred -CeEEEEEcCC--CCEEEEEeC-C-eEEEEECCCCCCcc--eEEEeccC-----------------CCceEEEEEeCCCC
Q 002495 804 -PIDSVCWDPS--GELLASVSE-D-SVRVWTVGSGSEGE--CVHELSCN-----------------GNKFHSCVFHPTYP 859 (915)
Q Consensus 804 -~V~si~~spd--g~~Las~s~-d-~I~iwdl~s~~~~~--~i~~~~~~-----------------~~~i~~i~~spdg~ 859 (915)
....|.|..+ ..+-++++. . +|..|--....... .+..+... ..-|+.|.++.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 3456677554 444333332 2 55444432222111 11122110 23478999999999
Q ss_pred EEEEEEc-CCeEEEEECCCCcE---E--EEcc---------------cCCCeEEEEEeCCCCEEEEEe
Q 002495 860 SLLVIGC-YQSLELWNMSENKT---M--TLTA---------------HEGLIAALAVSTETGYVASAS 906 (915)
Q Consensus 860 ~l~s~s~-dg~I~iwd~~~~~~---~--~~~~---------------h~~~V~~l~~spdg~~Lasgs 906 (915)
+|++++. .|.|+.||+..... + .+.+ -.+...-|..|.||++|+..+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998886 57999999987432 2 1111 112335677888998877653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.1 Score=46.87 Aligned_cols=208 Identities=16% Similarity=0.112 Sum_probs=125.9
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-
Q 002495 680 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV- 758 (915)
Q Consensus 680 V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~- 758 (915)
-..|+-.+||..-+++...+.|--.|-.+ ++....-.+....-..|..-||+...|+ ....-|.-.|-++.+..+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~t-Gev~~ypLg~Ga~Phgiv~gpdg~~Wit--d~~~aI~R~dpkt~evt~f~ 140 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPAT-GEVETYPLGSGASPHGIVVGPDGSAWIT--DTGLAIGRLDPKTLEVTRFP 140 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCC-CceEEEecCCCCCCceEEECCCCCeeEe--cCcceeEEecCcccceEEee
Confidence 45667788888888888888887778877 5555544555556667888888876662 2222566667666554332
Q ss_pred e-----ecCceEEEEecCCCEEEEEEc---------CCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-
Q 002495 759 F-----KGGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 823 (915)
Q Consensus 759 ~-----~~~~~~v~~sp~~~~ll~~~~---------dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d- 823 (915)
+ ........|.+++...+++.. .+.|++|+.-. ...-..||..|+|.+.++.-.+
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEecccc
Confidence 1 124466778888888777653 13455555432 2345678899999977776655
Q ss_pred eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EEcccCCCeEEEEEeCCCCE
Q 002495 824 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGY 901 (915)
Q Consensus 824 ~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~ 901 (915)
.|-..|..++. .+.+..-.........+-.+|-++.-++....+.+.-||-....-. .+.+....-.++.++..++.
T Consensus 211 aiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 211 AIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred ceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcE
Confidence 77777766552 1222222222334455566777777777777778887776655433 33343334444444444443
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0092 Score=41.82 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhcCCCC
Q 002495 9 DKMLDVYIHDYLVKRDLKASAQAFQAEGKVS 39 (915)
Q Consensus 9 ~~~l~~yiydyl~~~~~~~~a~a~~~e~~~~ 39 (915)
++.|+..|++||.+.|+.++|++|..|..+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999997653
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.18 Score=50.53 Aligned_cols=106 Identities=11% Similarity=0.004 Sum_probs=64.6
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceE
Q 002495 688 SMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 765 (915)
Q Consensus 688 dg~~Lasgs~--Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~ 765 (915)
++.++.+.+. ...|++||+++ +..+....-....+..=-...-++.+..-.-.||.-..||.++.+++..+.-....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~-gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTT-GQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccC-ceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4556666654 45699999997 44443332221222211111123445555667899999999999988877654444
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCceE
Q 002495 766 MRFQPHLGRYLAAAAENVVSILDAETQAC 794 (915)
Q Consensus 766 v~~sp~~~~ll~~~~dg~I~i~D~~t~~~ 794 (915)
-....++..++.+....+++.-|.++...
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhh
Confidence 44555666677777777777777766543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.29 Score=56.32 Aligned_cols=172 Identities=13% Similarity=0.222 Sum_probs=105.6
Q ss_pred CCeEEEEEcCCCCeEEEEEe--CCCcEEEEEcCCCeeEEEeecCceEEEEecCC----CEEEEEEcCCeEEEEECC----
Q 002495 721 ASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL----GRYLAAAAENVVSILDAE---- 790 (915)
Q Consensus 721 ~~V~sl~fsp~~~~ll~s~s--~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~----~~ll~~~~dg~I~i~D~~---- 790 (915)
.+|..|+|. ||+.++.+.- .+|.+++=| .+.+..| .++..+.|.|-+ ..+++.-....|.||-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF-EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~ 94 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF-EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT 94 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc-ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence 467788886 5566665543 244444432 2233333 367778888763 578888899999999765
Q ss_pred -CceEEEEecCCC-C--C--eEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEE
Q 002495 791 -TQACRLSLQGHT-K--P--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 863 (915)
Q Consensus 791 -t~~~~~~l~~h~-~--~--V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s 863 (915)
..+.+..-..+- . + -..+.|+|...+|++-... .-.+++++.... .....+ ...+.|+|.+|..||..|++
T Consensus 95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEEEE
Confidence 223332222211 1 1 2357899999888876666 445666654422 222233 44778999999999998887
Q ss_pred EEcCC-eEEEEECCCCcEE-----EEcccCCCeEEEEEeCCC
Q 002495 864 IGCYQ-SLELWNMSENKTM-----TLTAHEGLIAALAVSTET 899 (915)
Q Consensus 864 ~s~dg-~I~iwd~~~~~~~-----~~~~h~~~V~~l~~spdg 899 (915)
+-... .-+|||-...... .+..-.+.|.+|.-.-|.
T Consensus 173 AvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ds 214 (671)
T PF15390_consen 173 AVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDS 214 (671)
T ss_pred EeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccc
Confidence 76554 6789987654332 344555677776654443
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=95.94 E-value=2.4 Score=52.84 Aligned_cols=177 Identities=12% Similarity=0.206 Sum_probs=102.3
Q ss_pred cCCCcEEEEEEC---C--C-CCEEEEEeCCCeEEEEEC------CCCC--------ceEEEecc---CCCCeEEEEEcCC
Q 002495 675 EHSSLITDVRFS---P--S-MPRLATSSFDKTVRVWDA------DNPG--------YSLRTFMG---HSASVMSLDFHPN 731 (915)
Q Consensus 675 ~h~~~V~~l~fs---p--d-g~~Lasgs~Dg~I~iWdl------~~~~--------~~~~~~~~---h~~~V~sl~fsp~ 731 (915)
....+|..|+|. . + ...++..-....+.|+.. .... .++..+.. ......+++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788889988 2 1 112344444555666661 1100 12223321 2346778999998
Q ss_pred CCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEc
Q 002495 732 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 811 (915)
Q Consensus 732 ~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~s 811 (915)
...-||..+..|...|||+......+ .. ...+.....|.| ++|... .+....|+|.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~---~~----------~~~~~~~~~gsi-~~d~~e----------~s~w~rI~W~ 212 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRK---SS----------NLRLSRNISGSI-IFDPEE----------LSNWKRILWV 212 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccC---Cc----------ceeeccCCCccc-cCCCcc----------cCcceeeEec
Confidence 77788899999999999992211110 00 011111112333 233221 1456688999
Q ss_pred CCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC
Q 002495 812 PSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 812 pdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~-~l~s~s~dg~I~iwd~~~ 877 (915)
.+...|++++...+.++|+.+......+. .......|..+.-+++.. ++++. ....|..+|+..
T Consensus 213 ~~~~~lLv~~r~~l~~~d~~~~~~~~~l~-~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 213 SDSNRLLVCNRSKLMLIDFESNWQTEYLV-TAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred CCCCEEEEEcCCceEEEECCCCCccchhc-cCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 88889999988899999998764433222 223456688888877732 23333 336677777766
|
These proteins are found in fungi. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.018 Score=58.42 Aligned_cols=134 Identities=14% Similarity=0.072 Sum_probs=76.2
Q ss_pred EEEEECCCcEEEEECCCCceeeE-eccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEE
Q 002495 650 LATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 728 (915)
Q Consensus 650 Lasgs~Dg~V~vwd~~t~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~f 728 (915)
|...+.||.|+-+++..-+.... -..|... .....-+..|++|+.+|.|++|.....+.....+..-...|.++--
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 33345677887777653322111 1112222 1122245689999999999999887544443333333444444433
Q ss_pred cCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCC
Q 002495 729 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET 791 (915)
Q Consensus 729 sp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t 791 (915)
.-+...+.++++.||.||.|++.-.+.+.....+.. .++..+++.+.++.|.+|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-----~~~e~~ivv~sd~~i~~a~~S~ 167 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-----ESGEELIVVGSDEFLKIADTSH 167 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccC-----CCcceeEEecCCceEEeecccc
Confidence 333334888999999999999988776655433221 2334455555555555555443
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=95.88 E-value=1 Score=46.02 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=40.8
Q ss_pred CEEEEEECCCcEEEEECC--CCceeeEeccCCCcEEEEEECCCCCEEEEEeCC---C---eEEEE
Q 002495 648 KLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---K---TVRVW 704 (915)
Q Consensus 648 ~~Lasgs~Dg~V~vwd~~--t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g---~I~iW 704 (915)
+.|+.+...++|.+|++. ....+.+|..- +.|..+.++..|+||+|--.+ . .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 455555667889999988 44555666554 789999999999999997432 2 56665
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.92 Score=55.96 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=45.2
Q ss_pred EEEEEeCCCcEEEEEcCCCeeEEEeecCce---------------EEEEec--CCCEEEEEEc----------CCeEEEE
Q 002495 735 LICSCDGDGEIRYWSINNGSCTRVFKGGTA---------------QMRFQP--HLGRYLAAAA----------ENVVSIL 787 (915)
Q Consensus 735 ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~---------------~v~~sp--~~~~ll~~~~----------dg~I~i~ 787 (915)
.|+.++.|+.|.-.|.++|+.+..|..... .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 344777899999999999998877642110 001111 2456777643 5889999
Q ss_pred ECCCceEEEEecC
Q 002495 788 DAETQACRLSLQG 800 (915)
Q Consensus 788 D~~t~~~~~~l~~ 800 (915)
|.++++.+..+..
T Consensus 342 Da~TGkl~W~~~~ 354 (764)
T TIGR03074 342 DVNTGALVWAWDP 354 (764)
T ss_pred ECCCCcEeeEEec
Confidence 9999999887753
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.88 Score=50.97 Aligned_cols=173 Identities=8% Similarity=-0.027 Sum_probs=79.7
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeeEEEee-------cCc-eEEEEecCCCEEEEEEcC-----------CeEEEEE
Q 002495 733 DDLICSCDGD-----GEIRYWSINNGSCTRVFK-------GGT-AQMRFQPHLGRYLAAAAE-----------NVVSILD 788 (915)
Q Consensus 733 ~~ll~s~s~D-----g~I~iwdl~~~~~~~~~~-------~~~-~~v~~sp~~~~ll~~~~d-----------g~I~i~D 788 (915)
+.+++.|+.+ ..|.+||+.+.+....-. ... .......++..++.++.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 5566677653 357889988765443211 011 111222334445555542 2577889
Q ss_pred CCCceEEEEecC----CCCCeEEEEEcCCCCEEEEEeC--------------CeEEEEECCCCCCcceEEEec--cCCCc
Q 002495 789 AETQACRLSLQG----HTKPIDSVCWDPSGELLASVSE--------------DSVRVWTVGSGSEGECVHELS--CNGNK 848 (915)
Q Consensus 789 ~~t~~~~~~l~~----h~~~V~si~~spdg~~Las~s~--------------d~I~iwdl~s~~~~~~i~~~~--~~~~~ 848 (915)
.++.+-...-.. ....-.+++. -++++++.++. +.|.+||+.+..- ..+.... .....
T Consensus 166 ~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W-~~~~~~g~~P~~r~ 243 (341)
T PLN02153 166 IADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW-TEVETTGAKPSARS 243 (341)
T ss_pred CCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcE-EeccccCCCCCCcc
Confidence 887654321110 0111112222 24565554431 2578888876421 1111110 00111
Q ss_pred eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEEcccCC--------CeEEEEEeCCCCEEEEEe
Q 002495 849 FHSCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTLTAHEG--------LIAALAVSTETGYVASAS 906 (915)
Q Consensus 849 i~~i~~spdg~~l~s~s~d--------------g~I~iwd~~~~~~~~~~~h~~--------~V~~l~~spdg~~Lasgs 906 (915)
..++ ..-++..++.|+.. +.|..||..+..-..+..... ...++.+.-++++++.|+
T Consensus 244 ~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 244 VFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred eeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 1222 22356666676641 267888887776543321111 112333344456676776
Q ss_pred cC
Q 002495 907 HD 908 (915)
Q Consensus 907 ~D 908 (915)
.+
T Consensus 323 ~~ 324 (341)
T PLN02153 323 KL 324 (341)
T ss_pred cC
Confidence 53
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.1 Score=63.44 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=57.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEE---ECCCCCEEEEEeCCCeEEEEEC
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR---FSPSMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 633 ~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~---fspdg~~Lasgs~Dg~I~iWdl 706 (915)
.-.++|+|++|+.||++++.|-.+|.|.+||+..++.++.+..|..+++.+- +..++..++++...|. +|.+
T Consensus 128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4467999999999999999999999999999999999999887776655544 4445556777766665 4543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.57 Score=56.04 Aligned_cols=148 Identities=8% Similarity=0.005 Sum_probs=72.8
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeeEEEe--ecCc-eEEEEecCCCEEEEEEcC------CeEEEEECCCceEEEEe
Q 002495 733 DDLICSCDGD-----GEIRYWSINNGSCTRVF--KGGT-AQMRFQPHLGRYLAAAAE------NVVSILDAETQACRLSL 798 (915)
Q Consensus 733 ~~ll~s~s~D-----g~I~iwdl~~~~~~~~~--~~~~-~~v~~sp~~~~ll~~~~d------g~I~i~D~~t~~~~~~l 798 (915)
+.+++.||.+ ..+..||..+.+....- .... .......++..++.|+.+ +.+.+||..+.+....-
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 5577677765 34778888776543221 1111 111222344445555531 46888998876543211
Q ss_pred --cCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC
Q 002495 799 --QGHTKPIDSVCWDPSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 867 (915)
Q Consensus 799 --~~h~~~V~si~~spdg~~Las~s~d---------~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~d 867 (915)
..... ..+++. .++.+++.|+.+ .+.+||..+..- ..+............+. -++..++.||.+
T Consensus 423 ~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~ 497 (534)
T PHA03098 423 PLPISHY-GGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCI--FNNKIYVVGGDK 497 (534)
T ss_pred CCCcccc-CceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence 11111 112222 346666666532 378888876521 11111111111111222 256666666654
Q ss_pred -----CeEEEEECCCCcEEEEcc
Q 002495 868 -----QSLELWNMSENKTMTLTA 885 (915)
Q Consensus 868 -----g~I~iwd~~~~~~~~~~~ 885 (915)
+.|.+||..+.+-..+..
T Consensus 498 ~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 498 YEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCcccceeEEEeCCCCEEEecCC
Confidence 478899988876554443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.1 Score=54.96 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEE
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVL 661 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~v 661 (915)
.-.|..|.++++|++||..|..|.+.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 346899999999999999987664443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.43 Score=57.04 Aligned_cols=183 Identities=10% Similarity=0.050 Sum_probs=86.7
Q ss_pred CCCCEEEEEECCC------cEEEEECCCCceeeE--eccCCCcEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCCc
Q 002495 645 SDGKLLATGGHDK------KAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGY 711 (915)
Q Consensus 645 pdg~~Lasgs~Dg------~V~vwd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~iWdl~~~~~ 711 (915)
.++.+++.|+.++ .+..||..+.+-... +.........+.+ +++.++.|+.+ ..+.+||..+...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3455677776543 577788765443221 1111222222222 56777888765 3477888876332
Q ss_pred eEEEeccCCCCeEEEEEcCCCCeEEEEEeCC------CcEEEEEcCCCeeEEEee--cCc-eEEEEecCCCEEEEEEcC-
Q 002495 712 SLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFK--GGT-AQMRFQPHLGRYLAAAAE- 781 (915)
Q Consensus 712 ~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~D------g~I~iwdl~~~~~~~~~~--~~~-~~v~~sp~~~~ll~~~~d- 781 (915)
....-..+...-.+++.. ++.+++.|+.+ ..+..||+.+.+....-. ... .......++..+++|+.+
T Consensus 371 ~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred eeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccC
Confidence 111000011111122222 34566667632 458889988765443221 111 111222344444555432
Q ss_pred -------CeEEEEECCCceEEEE--ecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCC
Q 002495 782 -------NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSG 833 (915)
Q Consensus 782 -------g~I~i~D~~t~~~~~~--l~~h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s~ 833 (915)
..+.+||.++.+.... +.........+.+ ++++++.|+.+ .|.+||..+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388899887654332 1111111112222 56666666543 5677776543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.39 E-value=3.1 Score=50.98 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=23.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 002495 677 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 707 (915)
Q Consensus 677 ~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~ 707 (915)
.-.|..|.++++|++|+..|..| |.|-.+.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP 113 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELP 113 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEec
Confidence 34688999999999999998866 5554443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.37 E-value=6.4 Score=44.55 Aligned_cols=187 Identities=11% Similarity=0.021 Sum_probs=97.9
Q ss_pred CEEEEEeCCCeEEEEECCCCCceEEEeccC--CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCce---
Q 002495 690 PRLATSSFDKTVRVWDADNPGYSLRTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--- 764 (915)
Q Consensus 690 ~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h--~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~--- 764 (915)
..++++..||.|.-.|.++ +..+.....- ...+.+-.+..+|+ |+.++.++.++.+|.++++.+..++....
T Consensus 69 g~v~~~~~~G~i~A~d~~~-g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDT-GLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CeEEEecCCCcEEEEeCCC-CcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 3556667788888888887 3333211111 12222223333544 44788899999999999998888776551
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCC---CCeEEEEEcCCCCEEEEEeC--C-eEEEEECCCCCCcce
Q 002495 765 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT---KPIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGEC 838 (915)
Q Consensus 765 ~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~---~~V~si~~spdg~~Las~s~--d-~I~iwdl~s~~~~~~ 838 (915)
.-.....+..++..+.++.+...|..+++.+....... ..+..--...++ .++.+.. + .+.-+|..++.....
T Consensus 146 ~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 146 ASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred ecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence 11112233455555578999999999888776654322 111111111222 3333333 3 455566655532211
Q ss_pred EEE-eccCCCce------EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002495 839 VHE-LSCNGNKF------HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 881 (915)
Q Consensus 839 i~~-~~~~~~~i------~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~ 881 (915)
.+. .......+ ..-...-+ ..++.++.++.+..+|..+++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceE
Confidence 110 00000001 00011111 22466677788888899988887
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=95.32 E-value=8.1 Score=45.37 Aligned_cols=171 Identities=8% Similarity=0.012 Sum_probs=80.9
Q ss_pred CeEEEEEeCC-------CcEEEEEcCCCeeEEEee-c---C--ceEEE-EecCCCEEEEEEcC-----CeEEEEECCCce
Q 002495 733 DDLICSCDGD-------GEIRYWSINNGSCTRVFK-G---G--TAQMR-FQPHLGRYLAAAAE-----NVVSILDAETQA 793 (915)
Q Consensus 733 ~~ll~s~s~D-------g~I~iwdl~~~~~~~~~~-~---~--~~~v~-~sp~~~~ll~~~~d-----g~I~i~D~~t~~ 793 (915)
+.+++.|+.+ ..+.+||+++.+....-. + . ....+ ....+..++.++.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566667643 247788888765442211 0 0 01111 22233444455443 468889998865
Q ss_pred EEEEecC----CCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCCCCCcceEEEec--cCCCceEEEEEeCCCCEE
Q 002495 794 CRLSLQG----HTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSL 861 (915)
Q Consensus 794 ~~~~l~~----h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s~~~~~~i~~~~--~~~~~i~~i~~spdg~~l 861 (915)
....-.. ....-.+++. -++++++.|+.+ .+.+||+.+..- ..+.... .....-..++. -+++.+
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~R~~~~~~~-~~gkiy 332 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW-FHCSTPGDSFSIRGGAGLEV-VQGKVW 332 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE-EeCCCCCCCCCCCCCcEEEE-ECCcEE
Confidence 4332111 1111122222 245666666542 467788765421 1111000 00011112222 256667
Q ss_pred EEEEcC----CeEEEEECCCCcEEEEccc-----CCCeEEEEEeCCCCEEEEEec
Q 002495 862 LVIGCY----QSLELWNMSENKTMTLTAH-----EGLIAALAVSTETGYVASASH 907 (915)
Q Consensus 862 ~s~s~d----g~I~iwd~~~~~~~~~~~h-----~~~V~~l~~spdg~~Lasgs~ 907 (915)
++++.+ ..|.+||+.+.+...+... .....++ ..-++++++.|+.
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~ 386 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGE 386 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCc
Confidence 777655 4689999998876544322 1111222 2335667777775
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.15 Score=62.31 Aligned_cols=142 Identities=11% Similarity=0.025 Sum_probs=92.0
Q ss_pred cEEEEEECCCCCEEEEE--eCCCeEEEEECCCCCce----EE------EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEE
Q 002495 679 LITDVRFSPSMPRLATS--SFDKTVRVWDADNPGYS----LR------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 746 (915)
Q Consensus 679 ~V~~l~fspdg~~Lasg--s~Dg~I~iWdl~~~~~~----~~------~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~ 746 (915)
.|..+...+|+...++. +.+-.|.+||+++-... .+ +.......+.++.|+|.=....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555666676655444 33457899999752111 11 11122345667889887555566788899999
Q ss_pred EEEcCCCee-EE--EeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecC----CCCCeEEEEEcCCCCEEEE
Q 002495 747 YWSINNGSC-TR--VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG----HTKPIDSVCWDPSGELLAS 819 (915)
Q Consensus 747 iwdl~~~~~-~~--~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~----h~~~V~si~~spdg~~Las 819 (915)
+..+..... +. .+.....+++|+|.+..++++-..|++.-|...-. .+..+.+ ....|.||+|.....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 887764322 12 23346789999999999999999999988865432 2222221 1367999999988887776
Q ss_pred Ee
Q 002495 820 VS 821 (915)
Q Consensus 820 ~s 821 (915)
.+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=95.06 E-value=10 Score=45.02 Aligned_cols=245 Identities=14% Similarity=0.131 Sum_probs=119.3
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCc--eeeEeccC-CCcEEEEEECCCC-CEEEEEeC--CCeEEEEECCCCCceEEEec
Q 002495 644 SSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEH-SSLITDVRFSPSM-PRLATSSF--DKTVRVWDADNPGYSLRTFM 717 (915)
Q Consensus 644 spdg~~Lasgs~Dg~V~vwd~~t~~--~~~~l~~h-~~~V~~l~fspdg-~~Lasgs~--Dg~I~iWdl~~~~~~~~~~~ 717 (915)
..++..++.+..+|.+....+.... .....-+. ....+++++..++ .+|+.||. |+.+..|.... -..+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~-l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSN-LEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESES-EEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCC-cEEEEecc
Confidence 4567789999999999988776433 11222222 5556777776655 47777777 44455555322 22333333
Q ss_pred cCCCCeEEEEEcCC---CC-------eEEEEEe--CCCcEEEEEcCCCe---eEEEeec-CceEEEEecC---CCEEEEE
Q 002495 718 GHSASVMSLDFHPN---KD-------DLICSCD--GDGEIRYWSINNGS---CTRVFKG-GTAQMRFQPH---LGRYLAA 778 (915)
Q Consensus 718 ~h~~~V~sl~fsp~---~~-------~ll~s~s--~Dg~I~iwdl~~~~---~~~~~~~-~~~~v~~sp~---~~~ll~~ 778 (915)
.-++|.++++... +. .++++++ .+|.|++..-.-+- ....... ++..+-..+. ...+++.
T Consensus 298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 4578888888532 12 4554443 46788877432111 1111111 1222211111 1334444
Q ss_pred EcCCeEEEEECC---CceEEEEec--CC---CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEecc-CCCce
Q 002495 779 AAENVVSILDAE---TQACRLSLQ--GH---TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGNKF 849 (915)
Q Consensus 779 ~~dg~I~i~D~~---t~~~~~~l~--~h---~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~-~~~~i 849 (915)
+....-+++.+. ..+.+..+. +. ...+.+..+. +.+++=.....|++.+.... .....+.. .+..|
T Consensus 377 S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~I 451 (504)
T PF10433_consen 377 SFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSII 451 (504)
T ss_dssp EESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS---
T ss_pred EcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCeE
Confidence 444444454442 233332221 11 2233333333 66777777778999987654 33433322 23344
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EEc-----ccCCCeEEEEEeC
Q 002495 850 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-----AHEGLIAALAVST 897 (915)
Q Consensus 850 ~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~-~~~-----~h~~~V~~l~~sp 897 (915)
.++++ ++.+++++..++.+.++.+...... ... .....|.|+...|
T Consensus 452 ~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 452 VAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 44444 3467888888899999988877665 211 2577888888766
|
... |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=94.99 E-value=7 Score=42.91 Aligned_cols=230 Identities=13% Similarity=0.022 Sum_probs=109.0
Q ss_pred CCCEEEEEECCCcEEEEECCC--CceeeEeccCCCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCc-----------
Q 002495 646 DGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGY----------- 711 (915)
Q Consensus 646 dg~~Lasgs~Dg~V~vwd~~t--~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~iWdl~~~~~----------- 711 (915)
++++|+.|+++|...+. +.. .+..+.+ +...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 44689999988855554 543 2333333 456899999998777666555 344599999842110
Q ss_pred ---eEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeEEEe---e---c-CceEEEEecC--CCEE
Q 002495 712 ---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVF---K---G-GTAQMRFQPH--LGRY 775 (915)
Q Consensus 712 ---~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~----~~~~~~---~---~-~~~~v~~sp~--~~~l 775 (915)
......+|.....-+++......+++++....+|.++.+... ...+.+ . . ....+..++. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 011122344433333333222223334444566666544322 112211 0 1 1111222222 3456
Q ss_pred EEEEcCCeEEEEECCC--ceE-----EEEecCCC-CCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCC
Q 002495 776 LAAAAENVVSILDAET--QAC-----RLSLQGHT-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN 847 (915)
Q Consensus 776 l~~~~dg~I~i~D~~t--~~~-----~~~l~~h~-~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~ 847 (915)
.+|+..+...++++.. ... -....... .++. +...+++.+|++ -++...+.|...... .....+.- ..
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~-i~~l~~~e~Llc-~~~~~v~Vn~~G~~~-~r~~~l~w-~~ 244 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPIS-VVQVPRDEFLLC-YDEFGVFVNLYGKRR-SRNPILHW-EF 244 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceE-EEEECCCeEEEE-ECcEEEEEeCCCCcc-ccceEEEc-CC
Confidence 6665543344444422 100 00011111 3333 333444555544 344344444432011 11111211 33
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc
Q 002495 848 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 885 (915)
Q Consensus 848 ~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~ 885 (915)
...++++. ..++++-+ ++.|.|+++.+++.+....
T Consensus 245 ~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 245 MPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELA 279 (302)
T ss_pred cccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEe
Confidence 45566665 35666665 5569999999998774333
|
Unpublished observations. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.98 E-value=2.9 Score=44.60 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=86.2
Q ss_pred CeEEEEEcCCCCEEEEEE-CC--CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEE-CCCCCce
Q 002495 637 KVICCHFSSDGKLLATGG-HD--KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD-ADNPGYS 712 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs-~D--g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWd-l~~~~~~ 712 (915)
.+.+.++++||..+|... .+ ..|+++... .....+. ....++...|++++...++...+...+++. ..+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999777765 23 345555433 2222221 223788889999987777766666677774 2222222
Q ss_pred EEEecc--CCCCeEEEEEcCCCCeEEEEE--eCCCcEEEEEcCC---C--e----eEEEe---ecCceEEEEecCCCEEE
Q 002495 713 LRTFMG--HSASVMSLDFHPNKDDLICSC--DGDGEIRYWSINN---G--S----CTRVF---KGGTAQMRFQPHLGRYL 776 (915)
Q Consensus 713 ~~~~~~--h~~~V~sl~fsp~~~~ll~s~--s~Dg~I~iwdl~~---~--~----~~~~~---~~~~~~v~~sp~~~~ll 776 (915)
...+.. ....|..++++|||.++++.. ..++.|.+--+.. + . .+... ...+..+.|..++..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 222221 112899999999999987666 3356777765542 2 0 11111 12456788999887666
Q ss_pred EEEcC
Q 002495 777 AAAAE 781 (915)
Q Consensus 777 ~~~~d 781 (915)
.+...
T Consensus 182 ~~~~~ 186 (253)
T PF10647_consen 182 LGRSA 186 (253)
T ss_pred EeCCC
Confidence 66553
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.84 E-value=1 Score=51.07 Aligned_cols=104 Identities=11% Similarity=0.037 Sum_probs=60.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCeEEEE-ECCCCC----Ccc-eEEEeccC----CCceEEEEEeCCCCEEEEEEcC-----
Q 002495 803 KPIDSVCWDPSGELLASVSEDSVRVW-TVGSGS----EGE-CVHELSCN----GNKFHSCVFHPTYPSLLVIGCY----- 867 (915)
Q Consensus 803 ~~V~si~~spdg~~Las~s~d~I~iw-dl~s~~----~~~-~i~~~~~~----~~~i~~i~~spdg~~l~s~s~d----- 867 (915)
...+.++|.++| +++ ++...|..| |..... ..+ .+..+... ......++|.|||.+.++.+..
T Consensus 72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 446788999888 444 444555544 443211 112 22223322 3446788999999876655521
Q ss_pred --------------CeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEEEecC
Q 002495 868 --------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 908 (915)
Q Consensus 868 --------------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~D 908 (915)
+.|.-+|...++...+.........++|+++|.++++-..+
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 34566666655544443334456789999999887764433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.81 E-value=3 Score=46.46 Aligned_cols=77 Identities=9% Similarity=0.037 Sum_probs=43.3
Q ss_pred EEEEecCCCCCeEEEEEcC-------CCCEEEEEeCC-eEEEEECCCCCCcceEEE-eccCCCceEEEEEeCCCCEEEEE
Q 002495 794 CRLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHE-LSCNGNKFHSCVFHPTYPSLLVI 864 (915)
Q Consensus 794 ~~~~l~~h~~~V~si~~sp-------dg~~Las~s~d-~I~iwdl~s~~~~~~i~~-~~~~~~~i~~i~~spdg~~l~s~ 864 (915)
++..+..| ..+..+.|.. .|.+|++.... .|...++........... +......+..+++.|||..+++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 33444444 4556666653 34566665555 777777754432222223 23334478999999999888877
Q ss_pred EcCCeEE
Q 002495 865 GCYQSLE 871 (915)
Q Consensus 865 s~dg~I~ 871 (915)
..+|.|+
T Consensus 324 d~~G~iy 330 (331)
T PF07995_consen 324 DSDGKIY 330 (331)
T ss_dssp -TTTTEE
T ss_pred CCCCeEe
Confidence 7777764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.087 Score=40.17 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK 668 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~ 668 (915)
...|.+++|+|...+||.|+.||.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 443
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=94.77 E-value=3.9 Score=45.75 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=51.1
Q ss_pred CCCEEEEEECC-------CcEEEEECCCCceeeE--ecc-CCC---cEEEEEECCCCCEEEEEeCC-----CeEEEEECC
Q 002495 646 DGKLLATGGHD-------KKAVLWHTDTLKSKTN--LEE-HSS---LITDVRFSPSMPRLATSSFD-----KTVRVWDAD 707 (915)
Q Consensus 646 dg~~Lasgs~D-------g~V~vwd~~t~~~~~~--l~~-h~~---~V~~l~fspdg~~Lasgs~D-----g~I~iWdl~ 707 (915)
++++++.|+.+ ..+.+||+.+.+-... ... ... ....+.+ ++++++.|+.+ ..|.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45566666653 3577888775432211 110 010 1222233 45677777753 357788887
Q ss_pred CCCceE-EEecc---CCCC-eEEEEEcCCCCeEEEEEeCC-----------CcEEEEEcCCCeeE
Q 002495 708 NPGYSL-RTFMG---HSAS-VMSLDFHPNKDDLICSCDGD-----------GEIRYWSINNGSCT 756 (915)
Q Consensus 708 ~~~~~~-~~~~~---h~~~-V~sl~fsp~~~~ll~s~s~D-----------g~I~iwdl~~~~~~ 756 (915)
+..... ..+.. .... -.+++.. ++.+++.|+.+ ..|.+||+++.+-.
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 632211 11100 1111 1122222 34566666643 24778898876543
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=94.63 E-value=2.6 Score=46.81 Aligned_cols=100 Identities=10% Similarity=0.075 Sum_probs=49.4
Q ss_pred CeEEEEEeCC-----CcEEEEEcCCCeeE---EEe---ecCce-EEEEecCCCEEEEEEc-----CCeEEEEECCCceEE
Q 002495 733 DDLICSCDGD-----GEIRYWSINNGSCT---RVF---KGGTA-QMRFQPHLGRYLAAAA-----ENVVSILDAETQACR 795 (915)
Q Consensus 733 ~~ll~s~s~D-----g~I~iwdl~~~~~~---~~~---~~~~~-~v~~sp~~~~ll~~~~-----dg~I~i~D~~t~~~~ 795 (915)
+.+++.|+.+ ..+..||+.+.+.. ..+ ..... ......++..++.++. ...+.+||+++.+-.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 4566677654 35677787766531 111 11111 1122233444555553 247888998876543
Q ss_pred EE--ecCCCCCeEEEEEcCCCCEEEEEeCC-----eEEEEECCCC
Q 002495 796 LS--LQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGSG 833 (915)
Q Consensus 796 ~~--l~~h~~~V~si~~spdg~~Las~s~d-----~I~iwdl~s~ 833 (915)
.. +... ......+..-++++.+.|+.+ .+.+||..+.
T Consensus 153 ~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 21 2211 111222223356766766654 3567888764
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.77 Score=51.75 Aligned_cols=140 Identities=11% Similarity=0.103 Sum_probs=94.4
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCC-------eEEEEEeCCCcEEEEEcCCCe-eEE-
Q 002495 688 SMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-------DLICSCDGDGEIRYWSINNGS-CTR- 757 (915)
Q Consensus 688 dg~~La-sgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~-------~ll~s~s~Dg~I~iwdl~~~~-~~~- 757 (915)
+..+|+ .|+....++-.|++. ++.+..+.-|... -+.|.|... ..| .|-.+..|.-.|.+-.. .+.
T Consensus 478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 444443 344456677778886 7788888877665 366766421 123 45557777777766432 222
Q ss_pred -EeecCceEEEE----ecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECC
Q 002495 758 -VFKGGTAQMRF----QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 831 (915)
Q Consensus 758 -~~~~~~~~v~~----sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~ 831 (915)
.++.-...-.| .-..+++++++..|.|++||.-.......+.+....|..|..+.+|++|++.|...+.+.|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 22222222222 234589999999999999997766666666777788999999999999999999988888875
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=3.2 Score=46.35 Aligned_cols=147 Identities=10% Similarity=0.065 Sum_probs=82.5
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEE-EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCee
Q 002495 677 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 755 (915)
Q Consensus 677 ~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~-~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~ 755 (915)
...+.++.+.+++.+++++. .|.+.. ..+..+.... ....-...++++.+.+++.. +++ +..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~-~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNL-WML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCE-EEE-ecCCEEEEccCCCCCc
Confidence 45789999999886665554 554432 2222222222 22334567899999988654 434 4467665433444432
Q ss_pred EEEee-------cCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe---cCCCCCeEEEEEcCCCCEEEEEeCCeE
Q 002495 756 TRVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGHTKPIDSVCWDPSGELLASVSEDSV 825 (915)
Q Consensus 756 ~~~~~-------~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l---~~h~~~V~si~~spdg~~Las~s~d~I 825 (915)
-.... .....+.+.+++ .+++++.+|.|.. ....++.-... ..-...+..+.|..+++.+++|..+.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPG-EIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCC-CEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 22111 123456677754 4666667776654 33333322222 122245788888888888888887776
Q ss_pred EEEE
Q 002495 826 RVWT 829 (915)
Q Consensus 826 ~iwd 829 (915)
..|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 6665
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.012 Score=65.33 Aligned_cols=140 Identities=12% Similarity=0.184 Sum_probs=101.1
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE
Q 002495 679 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 758 (915)
Q Consensus 679 ~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~ 758 (915)
.-....|.+.+..++.++.+..|..||-.. ..+... ..++....++|..+++.+++.+...+.+.+||+.+...-..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~ag--q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAG--QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhc--ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 334456788777899999999999998763 222222 24566677899888888888888899999999986532211
Q ss_pred eecC---ceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEe
Q 002495 759 FKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 821 (915)
Q Consensus 759 ~~~~---~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s 821 (915)
-.++ ..-+.|++....++.+...+.+.||...+.+.+.....|...+++++|.+.+..+..++
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dc 178 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDC 178 (615)
T ss_pred hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCc
Confidence 1111 12256788888888888899999999988777766666899999999998665544433
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.63 Score=55.39 Aligned_cols=125 Identities=13% Similarity=0.175 Sum_probs=85.0
Q ss_pred cceeeeEeecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEec-cCCCcEEEEEEC--CCCCEEEEEeCCCe
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFS--PSMPRLATSSFDKT 700 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~-~h~~~V~~l~fs--pdg~~Lasgs~Dg~ 700 (915)
.|....+++..-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.+++|. +++..+++.|....
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 566667777777777777777766665555555689999998776444332 457889999996 48889999999999
Q ss_pred EEEEECC-----CCC---ceEEE--eccCC-CCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002495 701 VRVWDAD-----NPG---YSLRT--FMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 751 (915)
Q Consensus 701 I~iWdl~-----~~~---~~~~~--~~~h~-~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~ 751 (915)
|.+|.-- +.+ ..++. +..|+ .+|.+..|.++|. +++.+ ++.+.|+|-.
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 9998542 111 12222 23344 6799999999864 33232 5678888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=94.44 E-value=8.6 Score=41.89 Aligned_cols=162 Identities=11% Similarity=0.091 Sum_probs=94.6
Q ss_pred cEEEEEcCCCeeEEEeec---------CceEEEEecCC-----CEEEEEEc-CCeEEEEECCCceEEEEecCCC------
Q 002495 744 EIRYWSINNGSCTRVFKG---------GTAQMRFQPHL-----GRYLAAAA-ENVVSILDAETQACRLSLQGHT------ 802 (915)
Q Consensus 744 ~I~iwdl~~~~~~~~~~~---------~~~~v~~sp~~-----~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~------ 802 (915)
.|.+||+++.+.++.+.- ....+.+.... ++++.+.. .+.|.|||+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 677889999888777642 12345555532 34444444 4689999999987665543321
Q ss_pred -------------CCeEEEEEcC---CCCEEEEEeCCeEEEEECCCC-----CC------cceEEEeccCCCceEEEEEe
Q 002495 803 -------------KPIDSVCWDP---SGELLASVSEDSVRVWTVGSG-----SE------GECVHELSCNGNKFHSCVFH 855 (915)
Q Consensus 803 -------------~~V~si~~sp---dg~~Las~s~d~I~iwdl~s~-----~~------~~~i~~~~~~~~~i~~i~~s 855 (915)
..+..++.++ ++++|+-......++|.+.+. .. ...+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 2366677765 667777666554455554321 11 11222322222456678899
Q ss_pred CCCCEEEEEEcCCeEEEEECCCC----cE--EEEccc-CCCeEEEEEeC--CCCEEEEE
Q 002495 856 PTYPSLLVIGCYQSLELWNMSEN----KT--MTLTAH-EGLIAALAVST--ETGYVASA 905 (915)
Q Consensus 856 pdg~~l~s~s~dg~I~iwd~~~~----~~--~~~~~h-~~~V~~l~~sp--dg~~Lasg 905 (915)
++|..+++--..+.|..|+.... .. +..... -..+.++.+.+ +|.+.+.+
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 99998888888899999999872 22 222222 35778999988 77665554
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.37 E-value=4 Score=48.61 Aligned_cols=71 Identities=11% Similarity=-0.002 Sum_probs=45.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~ 708 (915)
.+.+.+|..+|....=+. +.--.|+||++ +|..+..+.-....+..+.|+.+. .|++...||+|+||++..
T Consensus 43 ~gGpIAV~r~p~~~~~~~-~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY-SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred cCCceEEEeccccccccc-ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence 444555555553211111 23346888876 455555555444588899999664 677778999999999874
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.1 Score=50.56 Aligned_cols=187 Identities=16% Similarity=0.206 Sum_probs=107.3
Q ss_pred EEEEcCCCceecCCCCeeEeCC---CchhhhhhhhhcccCCCCCceeeecccCCCC-------CCCCCCcccccccCccc
Q 002495 556 MMFGTDGAGTLTSPSNQLWDDK---DLELRADMDRLVEDGSLDDNVESFLSHDDTD-------PRDAGGRGMDVSQGFSF 625 (915)
Q Consensus 556 ~~fs~dg~~~~~~~~~~lwd~~---~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~-------~~~~~~~~~d~~~~~~~ 625 (915)
+-|-.+..|..-++.+.|+... ..++.+.+..+...|+..-......-++... ......-.+|++.|
T Consensus 424 Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErG--- 500 (776)
T COG5167 424 VGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERG--- 500 (776)
T ss_pred EEEcccceeEeeCCeeeeEeccCCcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecccc---
Confidence 3334556666667777665433 2456666666665544332222222222111 11122334566654
Q ss_pred eeeeEeecCCCCeEEEEEcCCCC-------EEEEEECCCcEEEEECC-CCceeeEeccCCCcEEEEEECC----CCCEEE
Q 002495 626 KEANSVRASTSKVICCHFSSDGK-------LLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSP----SMPRLA 693 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~lafspdg~-------~Lasgs~Dg~V~vwd~~-t~~~~~~l~~h~~~V~~l~fsp----dg~~La 693 (915)
+.+..+..|.+. -|.|.|+.+ --++|-.+..|.-.|.. .+..+.. ......++.-.|+. ...+||
T Consensus 501 kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v-~esKdY~tKn~Fss~~tTesGyIa 577 (776)
T COG5167 501 KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV-VESKDYKTKNKFSSGMTTESGYIA 577 (776)
T ss_pred eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee-eeehhccccccccccccccCceEE
Confidence 445555666654 567777543 22345456666555644 3322222 12223333334443 345999
Q ss_pred EEeCCCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcC
Q 002495 694 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 751 (915)
Q Consensus 694 sgs~Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~ 751 (915)
+++..|.|++||.-. ......+.+....|..|....+|.++||+| ...|.+-|++
T Consensus 578 ~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 578 AASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred EecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 999999999999764 334455667778899999999999999888 5678888765
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.23 E-value=8 Score=40.21 Aligned_cols=193 Identities=17% Similarity=0.188 Sum_probs=106.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEEE--CCCCC--EEEEEeC--CCeEEEEECCCCC
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--SPSMP--RLATSSF--DKTVRVWDADNPG 710 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~f--spdg~--~Lasgs~--Dg~I~iWdl~~~~ 710 (915)
.|+--+-+|+...+++....+-++|||+. ++.+..+....-.-.++.+ --.|. .|+.+|. ...|.+|.++...
T Consensus 57 AIwVh~t~P~kS~vItt~Kk~Gl~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~ 135 (364)
T COG4247 57 AIWVHATNPDKSLVITTVKKAGLRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNP 135 (364)
T ss_pred ceEeccCCcCcceEEEeeccCCeEEEecC-CCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCc
Confidence 34444557788888988889999999986 4445544422211122222 11333 2455543 4568888887645
Q ss_pred ceEEEeccC-------CCCeEEEEEcC--C-CCeEEEEEeCCCcEEEEEcCC-------CeeEEEeecCc--eEEEEecC
Q 002495 711 YSLRTFMGH-------SASVMSLDFHP--N-KDDLICSCDGDGEIRYWSINN-------GSCTRVFKGGT--AQMRFQPH 771 (915)
Q Consensus 711 ~~~~~~~~h-------~~~V~sl~fsp--~-~~~ll~s~s~Dg~I~iwdl~~-------~~~~~~~~~~~--~~v~~sp~ 771 (915)
..+..+... ...++.+++.. . +..++++...+|.|+-|.+.. .+.++.|+... ..+.....
T Consensus 136 ~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdE 215 (364)
T COG4247 136 QYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDE 215 (364)
T ss_pred cceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccc
Confidence 445444432 24455666543 3 566777888899999887743 24566665433 33344444
Q ss_pred CCEEEEEEcCCeEEEEECC-----CceEEEEecCC---CCCeE--EEEEcCCCC-EEEEEeCC--eEEEEEC
Q 002495 772 LGRYLAAAAENVVSILDAE-----TQACRLSLQGH---TKPID--SVCWDPSGE-LLASVSED--SVRVWTV 830 (915)
Q Consensus 772 ~~~ll~~~~dg~I~i~D~~-----t~~~~~~l~~h---~~~V~--si~~spdg~-~Las~s~d--~I~iwdl 830 (915)
.+.++.+-.|-.|.-|..+ +++.+.++.+. ...|. .|-+-|+|+ ||+..+.+ +..+|.-
T Consensus 216 tG~LYIaeEdvaiWK~~Aep~~G~~g~~idr~~d~~~LtdDvEGltiYy~pnGkGYL~aSSQGnNtya~y~R 287 (364)
T COG4247 216 TGFLYIAEEDVAIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVEGLTIYYGPNGKGYLLASSQGNNTYAAYTR 287 (364)
T ss_pred cceEEEeeccceeeecccCCCCCCccchhhhhcCchhhcccccccEEEEcCCCcEEEEEecCCCceEEEEEe
Confidence 4666666555444333332 23333333321 12222 355677777 66656555 5555543
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.93 E-value=1.9 Score=43.56 Aligned_cols=170 Identities=13% Similarity=0.150 Sum_probs=90.1
Q ss_pred CCCEEEEEEC--CCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCCceEEEeccCCCC
Q 002495 646 DGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSAS 722 (915)
Q Consensus 646 dg~~Lasgs~--Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~iWdl~~~~~~~~~~~~h~~~ 722 (915)
+|.++.+.+. ...|++||+.+++.+..-.-....+..=-...-+.++..-. .||.-.++|.++ -+++..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc-cCCc
Confidence 4556666654 34799999998887766543322222111112233333333 377788888886 33443333 3344
Q ss_pred eEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEee----c-C---ceEEEEecCCCEEEEEE-cCCeEEEEECCCce
Q 002495 723 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G-G---TAQMRFQPHLGRYLAAA-AENVVSILDAETQA 793 (915)
Q Consensus 723 V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~----~-~---~~~v~~sp~~~~ll~~~-~dg~I~i~D~~t~~ 793 (915)
=+.++. ++..++ .++...++++-|.++.....+.. + + ...+.|. ++.+++-- .+..|...|..+++
T Consensus 133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCc
Confidence 455554 455566 55556677777776654433321 1 1 1112221 23333322 24556666677776
Q ss_pred EEEEec------------CCCCCeEEEEEcCCCCEEEEEeC
Q 002495 794 CRLSLQ------------GHTKPIDSVCWDPSGELLASVSE 822 (915)
Q Consensus 794 ~~~~l~------------~h~~~V~si~~spdg~~Las~s~ 822 (915)
.+..+. .|....+.|++.|++..|+..+.
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 655442 24456788999998865544443
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.8 Score=48.31 Aligned_cols=267 Identities=14% Similarity=0.054 Sum_probs=125.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCC-CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceE
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 713 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~ 713 (915)
..+|.++.|+-.| .|.+|+.|| +..||..+++.+..-.... ..|..+..+..+ .|.+|+++| |++.+.+.....-
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 4578888888888 455666665 5667777777665544433 566666655555 677777777 7777665411100
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEE-ee--cCceEE--EEecCCCEEEEEEcCCeEEEEE
Q 002495 714 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-FK--GGTAQM--RFQPHLGRYLAAAAENVVSILD 788 (915)
Q Consensus 714 ~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~-~~--~~~~~v--~~sp~~~~ll~~~~dg~I~i~D 788 (915)
....-....|..+.-...|... .|+..|..+. .......... .+ ...+.+ -+...++.+.++..++.+++-+
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~lW--iGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~ 316 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGELW--IGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLT 316 (671)
T ss_pred cCCCCcchheeeeecccCCCEE--EeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEec
Confidence 1111123344444433343322 3554444332 2222221111 11 111111 1223345666777776666554
Q ss_pred CCCceEEEEecCCCC-CeEEEEEcC---CCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEE
Q 002495 789 AETQACRLSLQGHTK-PIDSVCWDP---SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 864 (915)
Q Consensus 789 ~~t~~~~~~l~~h~~-~V~si~~sp---dg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~ 864 (915)
.. ......+...++ .+-.++..| +.......+.+.+.+-+-.++.....++.+. +..|+.+++..++ .+..+
T Consensus 317 a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~R--g~nit~~~~d~~g-~lWlg 392 (671)
T COG3292 317 AD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLR--GMNITTTLEDSRG-RLWLG 392 (671)
T ss_pred ch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecc--ccccchhhhccCC-cEEEE
Confidence 32 111111111111 111111111 0001111111111222222222112222222 3445566666644 46667
Q ss_pred EcCCeEEEEECCC-CcEEEEc--ccCCCeEEEEEeCCCCEEEEEecCCcEEE
Q 002495 865 GCYQSLELWNMSE-NKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKL 913 (915)
Q Consensus 865 s~dg~I~iwd~~~-~~~~~~~--~h~~~V~~l~~spdg~~Lasgs~Dg~I~I 913 (915)
+..+-+..|+..+ +...... -..++|..|.=.|+++ |..|+.+|.+++
T Consensus 393 s~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 393 SMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred ecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 7766677777766 3333222 2456788888889888 667777887653
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.80 E-value=1.4 Score=52.42 Aligned_cols=109 Identities=12% Similarity=0.203 Sum_probs=70.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEE--eCCCCEEEEEEcCCeEEEEECC---
Q 002495 803 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF--HPTYPSLLVIGCYQSLELWNMS--- 876 (915)
Q Consensus 803 ~~V~si~~spdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~--spdg~~l~s~s~dg~I~iwd~~--- 876 (915)
....-+.-+.-++..++.+.. .+.|||.+.+. .+.-..+ .....|.++.| .|++..+++.|..+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344445555555655554445 99999998763 1111222 34677888887 5689999999999999998542
Q ss_pred --CC-------cEEEEcccC-CCeEEEEEeCCCCEEEEEecCCcEEEcC
Q 002495 877 --EN-------KTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 877 --~~-------~~~~~~~h~-~~V~~l~~spdg~~Lasgs~Dg~I~IWd 915 (915)
.. +.+.+..|+ .+|.+.+|.++|.+++.++ +.+.|++
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 11 122344555 6899999999997666553 3466553
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.5 Score=51.56 Aligned_cols=177 Identities=7% Similarity=-0.032 Sum_probs=83.2
Q ss_pred CCCEEEEEECCC-----cEEEEECCCCceee--EeccCCCcEEEEEECCCCCEEEEEeCC--CeEEEEECCCCCceEEEe
Q 002495 646 DGKLLATGGHDK-----KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSLRTF 716 (915)
Q Consensus 646 dg~~Lasgs~Dg-----~V~vwd~~t~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~D--g~I~iWdl~~~~~~~~~~ 716 (915)
++.++++|+.++ ++..||..+.+-.. .+.........+. -++...++|+.+ ..+..||..+... ..+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EEC
Confidence 345667776543 56678876543222 2222121222222 366677777764 3578888765322 111
Q ss_pred ccCCCCe--EEEEEcCCCCeEEEEEeCCC---cEEEEEcCCCeeEEEee--cCceEEEEecCCCEEEEEEcCCeEEEEEC
Q 002495 717 MGHSASV--MSLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDA 789 (915)
Q Consensus 717 ~~h~~~V--~sl~fsp~~~~ll~s~s~Dg---~I~iwdl~~~~~~~~~~--~~~~~v~~sp~~~~ll~~~~dg~I~i~D~ 789 (915)
..-.... .+++.. ++.+.+.|+.++ .+..||.++.+....-. ......+...-++.+++.+ |.+.+||.
T Consensus 347 ~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp 422 (480)
T PHA02790 347 PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCE 422 (480)
T ss_pred CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecC
Confidence 1111111 112222 355666777553 47788888765443211 1111111222234555444 45778888
Q ss_pred CCceEEE--EecCCCCCeEEEEEcCCCCEEEEEeCC------eEEEEECCC
Q 002495 790 ETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGS 832 (915)
Q Consensus 790 ~t~~~~~--~l~~h~~~V~si~~spdg~~Las~s~d------~I~iwdl~s 832 (915)
++.+-.. .+....... +++. -++++.++|+.+ .|.+||..+
T Consensus 423 ~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 7764432 222111222 2222 246766666642 455666544
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.68 E-value=12 Score=41.56 Aligned_cols=141 Identities=13% Similarity=0.245 Sum_probs=79.4
Q ss_pred CCeEEEEEcCCCCeEEEEEeCCCc------EEEEEcCCC----eeEE-----Eee---c--------CceEEEEecCCCE
Q 002495 721 ASVMSLDFHPNKDDLICSCDGDGE------IRYWSINNG----SCTR-----VFK---G--------GTAQMRFQPHLGR 774 (915)
Q Consensus 721 ~~V~sl~fsp~~~~ll~s~s~Dg~------I~iwdl~~~----~~~~-----~~~---~--------~~~~v~~sp~~~~ 774 (915)
+.+..|.+.+++..++ +.+++|. ++.+++... ..+. .+. + ....+++.+++..
T Consensus 20 GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4566788876555554 4555666 555555431 0010 010 1 3345777555555
Q ss_pred EEEEEcC------CeEEEEECCCceEEEEec---------------CCCCCeEEEEEcCCCCEEEEEeCC--------e-
Q 002495 775 YLAAAAE------NVVSILDAETQACRLSLQ---------------GHTKPIDSVCWDPSGELLASVSED--------S- 824 (915)
Q Consensus 775 ll~~~~d------g~I~i~D~~t~~~~~~l~---------------~h~~~V~si~~spdg~~Las~s~d--------~- 824 (915)
+++.-.+ ..|+.+|.. ++.+..+. .....+.+++++|+|+.|+++.+. .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 5554446 688888876 54433331 133468899999999966555432 1
Q ss_pred ------EEEEECCCCC----CcceEEEecc-----CCCceEEEEEeCCCCEEEE
Q 002495 825 ------VRVWTVGSGS----EGECVHELSC-----NGNKFHSCVFHPTYPSLLV 863 (915)
Q Consensus 825 ------I~iwdl~s~~----~~~~i~~~~~-----~~~~i~~i~~spdg~~l~s 863 (915)
++|+.+.... .......+.. ....+..+.+.+++++++.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 5565554322 1222333332 4677899999999986554
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=93.66 E-value=17 Score=43.56 Aligned_cols=152 Identities=13% Similarity=0.191 Sum_probs=79.7
Q ss_pred eecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEE--EecC-CCCCeEEEEEcC------CCCEEEEEeC---C--e
Q 002495 759 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL--SLQG-HTKPIDSVCWDP------SGELLASVSE---D--S 824 (915)
Q Consensus 759 ~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~--~l~~-h~~~V~si~~sp------dg~~Las~s~---d--~ 824 (915)
++..+..+.+..++..+++....|.|.+||...+.... .+.. +...|.--+|-+ ...++++.+. + .
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 45667788899999999999999999999993322111 2221 222111112322 1234444333 2 7
Q ss_pred EEEEECCCCCCcceEEEec---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EEc---ccC-CCeEEEE
Q 002495 825 VRVWTVGSGSEGECVHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT---AHE-GLIAALA 894 (915)
Q Consensus 825 I~iwdl~s~~~~~~i~~~~---~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~---~~~---~h~-~~V~~l~ 894 (915)
++++.+.. ....+.++. .+......+.|+-....|+.- .++.|.+|++...+.. .+. ... ..+.++.
T Consensus 208 ykL~~l~~--~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSN--ESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEecc--CCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 88898822 112222322 222333344444433334444 7789999999887654 222 121 2344444
Q ss_pred EeCCCCEEEEEecCCcEEEcC
Q 002495 895 VSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 895 ~spdg~~Lasgs~Dg~I~IWd 915 (915)
--...+.|++ .+.+|++.|
T Consensus 285 ~~s~nRvLLs--~~nkIyLld 303 (670)
T PF10395_consen 285 PPSPNRVLLS--VNNKIYLLD 303 (670)
T ss_pred cCCCCeEEEE--cCCEEEEEe
Confidence 3233344444 345677654
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=93.63 E-value=6.6 Score=46.10 Aligned_cols=148 Identities=6% Similarity=-0.059 Sum_probs=72.5
Q ss_pred CCeEEEEEeCC-----CcEEEEEcCCCeeEEEeec-----Cce-EEEEecCCCEEEEEEcC-----CeEEEEECCCceEE
Q 002495 732 KDDLICSCDGD-----GEIRYWSINNGSCTRVFKG-----GTA-QMRFQPHLGRYLAAAAE-----NVVSILDAETQACR 795 (915)
Q Consensus 732 ~~~ll~s~s~D-----g~I~iwdl~~~~~~~~~~~-----~~~-~v~~sp~~~~ll~~~~d-----g~I~i~D~~t~~~~ 795 (915)
++.+++.|+.+ ..+.+||+.+.+....... ... .......+..++.++.+ ..+.+||+.+.+..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 35566677754 3588899887765432211 111 11122333445555543 35778888776543
Q ss_pred EEec-----CCCCCeEEEEEcCCCCEEEEEeC-----CeEEEEECCCCCCcceEEEec--cCCCceEEEEEeCCCCEEEE
Q 002495 796 LSLQ-----GHTKPIDSVCWDPSGELLASVSE-----DSVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLV 863 (915)
Q Consensus 796 ~~l~-----~h~~~V~si~~spdg~~Las~s~-----d~I~iwdl~s~~~~~~i~~~~--~~~~~i~~i~~spdg~~l~s 863 (915)
..-. ..... .+++. -++++++.++. +.|.+||+.+..- ..+.... .......++ ..-+++.++.
T Consensus 308 ~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~-~~~~~~iyv~ 383 (470)
T PLN02193 308 HCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFAS-AAVGKHIVIF 383 (470)
T ss_pred eCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEE-EEECCEEEEE
Confidence 2111 01111 12222 24666666553 2588999876521 1121110 001112222 2335566667
Q ss_pred EEcC--------------CeEEEEECCCCcEEEE
Q 002495 864 IGCY--------------QSLELWNMSENKTMTL 883 (915)
Q Consensus 864 ~s~d--------------g~I~iwd~~~~~~~~~ 883 (915)
|+.+ +.+.+||..+.+-..+
T Consensus 384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 384 GGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 7643 2588999988765533
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.076 Score=63.13 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=76.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCCCcEEEEE-----------ECCCCCEEEEEeCCCeEEEEE
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR-----------FSPSMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~-----------fspdg~~Lasgs~Dg~I~iWd 705 (915)
.|..+-|-++.-++..+-.+++|+|..+++... ..+++|...+++++ .+|||+.|+.++.||.|++|-
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 344444445667778888889999887765432 55666877776654 588999999999999999887
Q ss_pred CCCCC----ceEEEeccCC-CCeEEEEEcCC-------C--CeEEEEEeCCCcEEEEEcCCCeeE
Q 002495 706 ADNPG----YSLRTFMGHS-ASVMSLDFHPN-------K--DDLICSCDGDGEIRYWSINNGSCT 756 (915)
Q Consensus 706 l~~~~----~~~~~~~~h~-~~V~sl~fsp~-------~--~~ll~s~s~Dg~I~iwdl~~~~~~ 756 (915)
+.-.+ .++..++.|+ .+-.|..|+.. + ..+|-+...+..+++|.....+|.
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 64322 3445566666 33333333322 1 123333444677899988777776
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=93.46 E-value=8.1 Score=43.22 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=22.8
Q ss_pred eEEEEECCCCcEEEEcccCCCe-EEEEEeCCCCEEEEEecCC
Q 002495 869 SLELWNMSENKTMTLTAHEGLI-AALAVSTETGYVASASHDK 909 (915)
Q Consensus 869 ~I~iwd~~~~~~~~~~~h~~~V-~~l~~spdg~~Lasgs~Dg 909 (915)
.+.+||..+.+-..+....... .+.+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 4678888776544332222221 2233445777888887653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=8.6 Score=43.67 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=10.0
Q ss_pred cEEEEEcCCCeeEE
Q 002495 744 EIRYWSINNGSCTR 757 (915)
Q Consensus 744 ~I~iwdl~~~~~~~ 757 (915)
.|.+||..+.+...
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58889988776543
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=5.9 Score=44.44 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=86.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCC--Cc-eeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc---eE
Q 002495 640 CCHFSSDGKLLATGGHDKKAVLWHTDT--LK-SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY---SL 713 (915)
Q Consensus 640 ~lafspdg~~Lasgs~Dg~V~vwd~~t--~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~---~~ 713 (915)
.+-|....+.|+ +...|.+.-|-++. .. ++..-....++|.+|.|++|.+.||+--.|++|.+++...... ..
T Consensus 27 gvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 344444344333 33445555565442 12 2222234567999999999999999999999999999843111 11
Q ss_pred EEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCC----eeEEEeecCceEEEEecCCCEEEEEEc--CCeEEEE
Q 002495 714 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----SCTRVFKGGTAQMRFQPHLGRYLAAAA--ENVVSIL 787 (915)
Q Consensus 714 ~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~----~~~~~~~~~~~~v~~sp~~~~ll~~~~--dg~I~i~ 787 (915)
.+.+..+..|..++|..+.+ +. ... +..+-+|-+... +.+++.+.++....|.++...++.++. .+++.=+
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e-~A-~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf 182 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTE-IA-FIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF 182 (657)
T ss_pred HHhccCcceeEEEEEecCee-EE-EEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence 22223345688899986632 33 222 344566654332 345556667777888888776665554 3444444
Q ss_pred ECCCc
Q 002495 788 DAETQ 792 (915)
Q Consensus 788 D~~t~ 792 (915)
-++++
T Consensus 183 ~~~~~ 187 (657)
T KOG2377|consen 183 HFRAG 187 (657)
T ss_pred EEeec
Confidence 44443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.15 E-value=6.5 Score=46.91 Aligned_cols=173 Identities=14% Similarity=0.234 Sum_probs=86.8
Q ss_pred CeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe-------ecCceEEEEecC
Q 002495 699 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQMRFQPH 771 (915)
Q Consensus 699 g~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~-------~~~~~~v~~sp~ 771 (915)
-.|+||++. |..+..+.-....+..+.|+.+. .|| +...||++++|++-... +..+ ...+..+.+..
T Consensus 64 ~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~~e-eLI-~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~- 137 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILWKHGELIGMGWSDDE-ELI-CVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFH- 137 (829)
T ss_pred eeEEEEecc--ccchHHHHhcCCCeeeecccCCc-eEE-EEeccceEEEeecchhh-hcccccccccccCceeEEEEec-
Confidence 347888876 45554444334478889999774 455 66789999999986332 2221 11222233332
Q ss_pred CCEEEEEEcCCeEE-EEECCCceEEEEecC-CCCCeEEEEE---cCCCC--EEEEEeCC-eEEEEECCCCCCcceEEEec
Q 002495 772 LGRYLAAAAENVVS-ILDAETQACRLSLQG-HTKPIDSVCW---DPSGE--LLASVSED-SVRVWTVGSGSEGECVHELS 843 (915)
Q Consensus 772 ~~~ll~~~~dg~I~-i~D~~t~~~~~~l~~-h~~~V~si~~---spdg~--~Las~s~d-~I~iwdl~s~~~~~~i~~~~ 843 (915)
++. ++-..+|.|. +.+.+.. ...++.. ......+.|| .|... .++-...- ...++-..... ...+.+.
T Consensus 138 ~GV-avlt~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~--~q~~~~~ 213 (829)
T KOG2280|consen 138 NGV-AVLTVSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR--VQLHALS 213 (829)
T ss_pred Cce-EEEecCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc--ccccccC
Confidence 333 3333444444 4344332 2222221 1111111222 22111 11111101 11122221110 1122222
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 002495 844 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 881 (915)
Q Consensus 844 ~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~ 881 (915)
.....+..|.++|+.++|+.-..+|.|.+-+++..+++
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 22466888999999999999999999999888766654
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.11 E-value=2.4 Score=53.98 Aligned_cols=227 Identities=11% Similarity=0.020 Sum_probs=109.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeeEeccCC-CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEE
Q 002495 636 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 714 (915)
Q Consensus 636 ~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~ 714 (915)
.....++|++.-.++|.++.+|.|++|-..--+.+.....-. -.+..+.|-.....+.....+..+.+|.....+.+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-- 113 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV-- 113 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee--
Confidence 456778999999999999999999999755333222221111 12222222222223344444555666765542211
Q ss_pred EeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEe----ecCceEE-EEecCCCEEEEEEcCCeEEEEEC
Q 002495 715 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQM-RFQPHLGRYLAAAAENVVSILDA 789 (915)
Q Consensus 715 ~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~----~~~~~~v-~~sp~~~~ll~~~~dg~I~i~D~ 789 (915)
-+...+++....+- -.++-+ ..+.+++||+.-....... ....... .+.+..-.+..--.+-...++-+
T Consensus 114 ---~~~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 187 (993)
T KOG1983|consen 114 ---FLKQEITSFVTDPP--PDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL 187 (993)
T ss_pred ---ecCCcceeccCCCC--cchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence 12233333332221 112244 7888888887643221111 1111000 11110000000000101111111
Q ss_pred CCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCe
Q 002495 790 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 869 (915)
Q Consensus 790 ~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~ 869 (915)
.... ..+..+..++.+..+......++.+....+.+|+...... .+.+. +....+..++..++++..||.
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~v~~h~Dgs 257 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYV---QSAYL-----PNGQLESRDGSHFVSYHTDGS 257 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccc---hhhcc-----cccccCccCCceEEEEEecCC
Confidence 1111 2233355566666666666666666665666666543211 11111 111122778999999999999
Q ss_pred EEEEECCCCcE
Q 002495 870 LELWNMSENKT 880 (915)
Q Consensus 870 I~iwd~~~~~~ 880 (915)
+.+||...++.
T Consensus 258 ~~fWd~s~g~~ 268 (993)
T KOG1983|consen 258 YAFWDVSSGKL 268 (993)
T ss_pred EEeeecCCCce
Confidence 99999998754
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=93.06 E-value=24 Score=41.87 Aligned_cols=224 Identities=15% Similarity=0.161 Sum_probs=106.6
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCc-eEEEeccC-CCCeEEEEEcCCCCeEEEEEeC--CCcEEEEEcCCCeeEEEee-
Q 002495 686 SPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGH-SASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK- 760 (915)
Q Consensus 686 spdg~~Lasgs~Dg~I~iWdl~~~~~-~~~~~~~h-~~~V~sl~fsp~~~~ll~s~s~--Dg~I~iwdl~~~~~~~~~~- 760 (915)
..++..++.+..+|.+....+...+. ......+. .....++++..++..+++.|+. |+.+..|....-+++..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 45677899999999999888875332 12222233 5566778887765335556655 5556666644445555554
Q ss_pred -cCceEEEEecC----CC------EEEEEEc---CCeEEEEECCCceE--EEEecCC--CCCeEEEEEcC-CCCEEEEEe
Q 002495 761 -GGTAQMRFQPH----LG------RYLAAAA---ENVVSILDAETQAC--RLSLQGH--TKPIDSVCWDP-SGELLASVS 821 (915)
Q Consensus 761 -~~~~~v~~sp~----~~------~ll~~~~---dg~I~i~D~~t~~~--~~~l~~h--~~~V~si~~sp-dg~~Las~s 821 (915)
+++..+++... .. .+++++. +|.++++.---+-. ....... ...++.+.... ++.+|+.+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 35555555422 12 6677654 67888874321111 1111112 22233333222 256888887
Q ss_pred CCeEEEEECCCCCCcceEEEe-----ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEE--cccCCCeEEEE
Q 002495 822 EDSVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALA 894 (915)
Q Consensus 822 ~d~I~iwdl~s~~~~~~i~~~-----~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~ 894 (915)
.+.-+|+.+..++....+.++ ......+.+..+. +..++=.+. ..|++.+....+.... ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 775566666421111222111 1111122222222 333433333 4588888877766632 23344444444
Q ss_pred EeCCCCEEEEEecCCcEEEc
Q 002495 895 VSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 895 ~spdg~~Lasgs~Dg~I~IW 914 (915)
+. +.+++.+-.++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 43 2355555556666554
|
... |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=3.7 Score=48.30 Aligned_cols=142 Identities=8% Similarity=0.036 Sum_probs=68.6
Q ss_pred CCeEEEEEeCC--CcEEEEEcCCCeeEEE--eecCceE-EEEecCCCEEEEEEcC---CeEEEEECCCceEEEE--ecCC
Q 002495 732 KDDLICSCDGD--GEIRYWSINNGSCTRV--FKGGTAQ-MRFQPHLGRYLAAAAE---NVVSILDAETQACRLS--LQGH 801 (915)
Q Consensus 732 ~~~ll~s~s~D--g~I~iwdl~~~~~~~~--~~~~~~~-v~~sp~~~~ll~~~~d---g~I~i~D~~t~~~~~~--l~~h 801 (915)
++.+++.|+.+ ..+..||..+.+.... +...... .....++..++.|+.+ ..+..||.++.+-... +...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 35566677754 4578888776644322 2211211 2223344455555543 3577888887654331 1111
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECC
Q 002495 802 TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMS 876 (915)
Q Consensus 802 ~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~d-----g~I~iwd~~ 876 (915)
.... +++ .-++++.+.|+ .+.+||.++.. ...+..+....... .+ ..-+++..++||.+ ..|.+||..
T Consensus 398 r~~~-~~~-~~~~~IYv~GG--~~e~ydp~~~~-W~~~~~m~~~r~~~-~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 398 HYKS-CAL-VFGRRLFLVGR--NAEFYCESSNT-WTLIDDPIYPRDNP-EL-IIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred cccc-eEE-EECCEEEEECC--ceEEecCCCCc-EeEcCCCCCCcccc-EE-EEECCEEEEECCcCCCcccceEEEEECC
Confidence 1111 222 23466666654 35678876542 22222222111112 22 22356666666654 357777776
Q ss_pred CCcE
Q 002495 877 ENKT 880 (915)
Q Consensus 877 ~~~~ 880 (915)
+++-
T Consensus 471 ~~~W 474 (480)
T PHA02790 471 TYSW 474 (480)
T ss_pred CCeE
Confidence 6653
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.84 E-value=26 Score=41.75 Aligned_cols=198 Identities=12% Similarity=0.067 Sum_probs=105.9
Q ss_pred cEEEEEECCCCCEEEEEeC-----CCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCc----EEEEE
Q 002495 679 LITDVRFSPSMPRLATSSF-----DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE----IRYWS 749 (915)
Q Consensus 679 ~V~~l~fspdg~~Lasgs~-----Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~----I~iwd 749 (915)
.+-.++.++|.++||-+-+ .=+++|-|+.++......+. +...+++|..|+..++++...++. |....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 3566788899988876633 33688999988444333333 345678999999988888776652 33333
Q ss_pred cCC--CeeEEEeecC--c--eEEEEecCCCEEEEEEc---CCeEEEEECCCceEE--EEecCCCCCeEEEEEcCCCCEEE
Q 002495 750 INN--GSCTRVFKGG--T--AQMRFQPHLGRYLAAAA---ENVVSILDAETQACR--LSLQGHTKPIDSVCWDPSGELLA 818 (915)
Q Consensus 750 l~~--~~~~~~~~~~--~--~~v~~sp~~~~ll~~~~---dg~I~i~D~~t~~~~--~~l~~h~~~V~si~~spdg~~La 818 (915)
+.+ ......++.. . ..+.-+....+|+.... ...+++.|....... .......+--..+. ..+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcEEE
Confidence 333 2222223222 1 12223344455555553 357777777654322 11111111111111 1244333
Q ss_pred EEeC--C-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEE
Q 002495 819 SVSE--D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTM 881 (915)
Q Consensus 819 s~s~--d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg---~I~iwd~~~~~~~ 881 (915)
.-+. + ..+|+.............+-.|...+.--.|+--..+|+....++ .|++++..++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 3332 2 455555443112223344555566666666776777777776654 7888888876654
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=9.4 Score=43.36 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=19.7
Q ss_pred EEEEECCCCcEEEEcccCC-CeEEEEEeCCCCEEEEEecC
Q 002495 870 LELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHD 908 (915)
Q Consensus 870 I~iwd~~~~~~~~~~~h~~-~V~~l~~spdg~~Lasgs~D 908 (915)
+.+||..+.+...+..-.. .-...+..-++++++.|+.+
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 5678888765432221111 11122344466677777653
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=92.74 E-value=5.8 Score=43.93 Aligned_cols=107 Identities=8% Similarity=0.013 Sum_probs=52.0
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCce---eeEec---cCCCcEEEEEECCCCCEEEEEeC-----CCeEEEEECCCC
Q 002495 646 DGKLLATGGHD-----KKAVLWHTDTLKS---KTNLE---EHSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADNP 709 (915)
Q Consensus 646 dg~~Lasgs~D-----g~V~vwd~~t~~~---~~~l~---~h~~~V~~l~fspdg~~Lasgs~-----Dg~I~iWdl~~~ 709 (915)
++.+++.|+.+ ..|..||+.+.+- ...+. .......++. -++++.+.|+. ...+.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55677777754 3566777765442 12211 1111112222 25666677764 245888888764
Q ss_pred CceEE-EeccCCCCeEEEEEcCCCCeEEEEEeCCC----cEEEEEcCCCeeE
Q 002495 710 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSCT 756 (915)
Q Consensus 710 ~~~~~-~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg----~I~iwdl~~~~~~ 756 (915)
..... .+......-.+++.. ++.+++.|+.++ .+.+||+++.+..
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKL--QNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CeeECCCCCCCCCCcceEEEE--CCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 32221 111111111112222 345666777654 3568888876543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.35 Score=36.91 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.4
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Q 002495 677 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 707 (915)
Q Consensus 677 ~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~ 707 (915)
...|.+++|+|...+||.+..||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999994
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=92.51 E-value=5.8 Score=45.87 Aligned_cols=30 Identities=17% Similarity=0.411 Sum_probs=19.9
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002495 848 KFHSCVFHPTYPSLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 848 ~i~~i~~spdg~~l~s~s~dg~I~iwd~~~ 877 (915)
.|..+++.+..+.+++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 366667777667777777777777777764
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=92.41 E-value=21 Score=39.65 Aligned_cols=142 Identities=17% Similarity=0.229 Sum_probs=84.2
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCe------EEEEECCCCC---ceE-----EEeccCCC--------CeEEEEEcCCCCe
Q 002495 677 SSLITDVRFSPSMPRLATSSFDKT------VRVWDADNPG---YSL-----RTFMGHSA--------SVMSLDFHPNKDD 734 (915)
Q Consensus 677 ~~~V~~l~fspdg~~Lasgs~Dg~------I~iWdl~~~~---~~~-----~~~~~h~~--------~V~sl~fsp~~~~ 734 (915)
-+.+..|.+.+++..+++.+++|. +..+++.... ..+ ..+....+ ...+|++.+++ .
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-S 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-C
Confidence 356788888876667777777777 6655554310 011 11111111 34578885554 4
Q ss_pred EEEEEeCC------CcEEEEEcCCCeeEEEee------------------cCceEEEEecCCCEEEEEEc-----CC---
Q 002495 735 LICSCDGD------GEIRYWSINNGSCTRVFK------------------GGTAQMRFQPHLGRYLAAAA-----EN--- 782 (915)
Q Consensus 735 ll~s~s~D------g~I~iwdl~~~~~~~~~~------------------~~~~~v~~sp~~~~ll~~~~-----dg--- 782 (915)
++++.-.+ ..|+.++.. ++.+..+. .+...+++++++..++++.. |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 55566666 678888866 55443331 23467899999997777654 22
Q ss_pred --------eEEEEECCC-c----eEEEEecC-----CCCCeEEEEEcCCCCEEEEE
Q 002495 783 --------VVSILDAET-Q----ACRLSLQG-----HTKPIDSVCWDPSGELLASV 820 (915)
Q Consensus 783 --------~I~i~D~~t-~----~~~~~l~~-----h~~~V~si~~spdg~~Las~ 820 (915)
.|..||..+ + ...+.+.. ....|..+.+.+++++|+.-
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 244456654 2 22333332 35678899999999977753
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=92.27 E-value=3.9 Score=48.86 Aligned_cols=163 Identities=16% Similarity=0.159 Sum_probs=91.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--ceeeEec-cCC------CcEEEEEECCCCCEEEEEeC-C---CeE
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLE-EHS------SLITDVRFSPSMPRLATSSF-D---KTV 701 (915)
Q Consensus 635 ~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~--~~~~~l~-~h~------~~V~~l~fspdg~~Lasgs~-D---g~I 701 (915)
.+.|..|.|..+++.+++...+|.|.+||...+ +.+..+. .+. .-|.....-....++++.+. + -.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 678999999999999999999999999999322 2111222 122 22222221122345544444 2 246
Q ss_pred EEEECCCCCceEEEec---cCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecC-------ceEEEEecC
Q 002495 702 RVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------TAQMRFQPH 771 (915)
Q Consensus 702 ~iWdl~~~~~~~~~~~---~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~-------~~~v~~sp~ 771 (915)
+++.+......+..+. .+........|+-..+.+..- .+++|.+|++...+..+++.-. ...+.+.+-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 7788732222333222 122222333333333444423 6889999999888766665422 234455554
Q ss_pred CCEEEEEEcCCeEEEEECCCceEEEEec
Q 002495 772 LGRYLAAAAENVVSILDAETQACRLSLQ 799 (915)
Q Consensus 772 ~~~ll~~~~dg~I~i~D~~t~~~~~~l~ 799 (915)
...-+.-+.++.|+++|+.-...+.++.
T Consensus 287 s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 4444455667899999987655544443
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.13 E-value=4 Score=49.24 Aligned_cols=73 Identities=10% Similarity=0.022 Sum_probs=48.1
Q ss_pred CCeEEEEEc--CCCCEEEEEeCC-eEEEEECCCCCCcceEEEeccCCCceEEEEEeCCC------CEEEEEEcCCeEEEE
Q 002495 803 KPIDSVCWD--PSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY------PSLLVIGCYQSLELW 873 (915)
Q Consensus 803 ~~V~si~~s--pdg~~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg------~~l~s~s~dg~I~iw 873 (915)
..+.+++++ ...++||+++.. .|.||-+...........-..+...|.+|+|-++. .+|++++-.|.+.+|
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~ 243 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF 243 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence 467888988 667788888777 77777654421111111122256678888887643 267788888988888
Q ss_pred EC
Q 002495 874 NM 875 (915)
Q Consensus 874 d~ 875 (915)
++
T Consensus 244 ~I 245 (717)
T PF08728_consen 244 KI 245 (717)
T ss_pred EE
Confidence 77
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.07 E-value=8.4 Score=39.48 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=76.6
Q ss_pred CEEEEEEcCCeEEEEECCC--ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-------eEEEE---ECCC-CCCcce-
Q 002495 773 GRYLAAAAENVVSILDAET--QACRLSLQGHTKPIDSVCWDPSGELLASVSED-------SVRVW---TVGS-GSEGEC- 838 (915)
Q Consensus 773 ~~ll~~~~dg~I~i~D~~t--~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-------~I~iw---dl~s-~~~~~~- 838 (915)
+.++++.....|.+||+.. ...+.+|.. -+.|..+.++..|+||++--.+ .+|+| +... .....+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 5666667788899999883 345555553 3788899999999999987544 34554 2221 111111
Q ss_pred --------------------EEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-------EEE----cc-c
Q 002495 839 --------------------VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-------MTL----TA-H 886 (915)
Q Consensus 839 --------------------i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~-------~~~----~~-h 886 (915)
+-++.. .....+++..|-...|++|+ ++.+.||.+..... +.+ .. |
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 111111 33456677777555566654 45677776644332 111 11 2
Q ss_pred CC-CeEEEEEeCCCCEEEEEecCCcEEEc
Q 002495 887 EG-LIAALAVSTETGYVASASHDKFVKLW 914 (915)
Q Consensus 887 ~~-~V~~l~~spdg~~Lasgs~Dg~I~IW 914 (915)
.+ .+..++|.. .|||..++. .++++
T Consensus 186 ~~~~p~~v~ic~--~yiA~~s~~-ev~Vl 211 (215)
T PF14761_consen 186 DNFKPTQVAICE--GYIAVMSDL-EVLVL 211 (215)
T ss_pred cCceEEEEEEEe--eEEEEecCC-EEEEE
Confidence 22 245555544 478777644 56654
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=91.90 E-value=29 Score=40.19 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=40.6
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce--eeEec-----cCCCcEEEEEECCCC
Q 002495 631 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLE-----EHSSLITDVRFSPSM 689 (915)
Q Consensus 631 l~~H~~~V~~lafspdg~~Lasgs~Dg~V~vwd~~t~~~--~~~l~-----~h~~~V~~l~fspdg 689 (915)
+-..-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 444566789999999998777665569999998654432 21121 125678999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=91.73 E-value=3.1 Score=43.86 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=76.5
Q ss_pred EEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC----eEEEEECCCCCCcceEEEe---ccCCCceEEEEEeC
Q 002495 784 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHEL---SCNGNKFHSCVFHP 856 (915)
Q Consensus 784 I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d----~I~iwdl~s~~~~~~i~~~---~~~~~~i~~i~~sp 856 (915)
-.+||+.+++...........+.+-.|.+||++|++|+.. .+++|+...........+. -....+..+...-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578888876543222233334445678999999998863 6888886541111111111 12345566677788
Q ss_pred CCCEEEEEEcCC-eEEEEECCC--CcEEE--Ecc------cCCCeEEEEEeCCCCEEEEEecCCcEE
Q 002495 857 TYPSLLVIGCYQ-SLELWNMSE--NKTMT--LTA------HEGLIAALAVSTETGYVASASHDKFVK 912 (915)
Q Consensus 857 dg~~l~s~s~dg-~I~iwd~~~--~~~~~--~~~------h~~~V~~l~~spdg~~Lasgs~Dg~I~ 912 (915)
||+.|++|+.+. ...+|.-.. ..... +.. ....---+...|+|++++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999999886 566776532 22221 111 111122455679999999988776554
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.65 E-value=7.7 Score=47.93 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=34.5
Q ss_pred CCeEEEEECCCCCceEEEeccCCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeec
Q 002495 698 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 761 (915)
Q Consensus 698 Dg~I~iWdl~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~ 761 (915)
+|.++.|++-..+..+..+....-.-.-.+.+|..++++ ++....+++||+...+.++..+.
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~L--agvG~~l~~YdlG~K~lLRk~e~ 972 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVL--AGVGRFLRLYDLGKKKLLRKCEL 972 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEE--EecccEEEEeeCChHHHHhhhhh
Confidence 455777776655554444332222222244556556555 33457888888887776665443
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.6 Score=53.94 Aligned_cols=122 Identities=13% Similarity=0.062 Sum_probs=74.6
Q ss_pred CCeEEEEECCCceEEE-----EecC------CCCCeEEEEEcCCCC-EEEEEeCC-eEEEEECCCCCCcceEEEeccCCC
Q 002495 781 ENVVSILDAETQACRL-----SLQG------HTKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGN 847 (915)
Q Consensus 781 dg~I~i~D~~t~~~~~-----~l~~------h~~~V~si~~spdg~-~Las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~ 847 (915)
+-.|+.||+++..... .+.. ...-..++.|.|.-. ..+.+..| .|+|..+.-.. ..+..+ .-..
T Consensus 123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~--~~v~s~-p~t~ 199 (1405)
T KOG3630|consen 123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA--QNVTSF-PVTN 199 (1405)
T ss_pred CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhh--hhhccc-Cccc
Confidence 3478888887642111 1111 223356778888544 33444455 77777664221 111111 2256
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc----cCCCeEEEEEeCCCCEEEEE
Q 002495 848 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA----HEGLIAALAVSTETGYVASA 905 (915)
Q Consensus 848 ~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~----h~~~V~~l~~spdg~~Lasg 905 (915)
..++++|+|.|+.+++|-..|++.-|...-.....+.. ....|.||+|-..-.+|++-
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 68899999999999999999999988765443332221 24789999998877776653
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=91.47 E-value=27 Score=38.97 Aligned_cols=61 Identities=7% Similarity=-0.003 Sum_probs=29.8
Q ss_pred CCCEEEEEECC-CcEEEEECCC----CceeeEecc-CCCcEEEEEECCCCCEEEEEeCC-----------CeEEEEECCC
Q 002495 646 DGKLLATGGHD-KKAVLWHTDT----LKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD-----------KTVRVWDADN 708 (915)
Q Consensus 646 dg~~Lasgs~D-g~V~vwd~~t----~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~D-----------g~I~iWdl~~ 708 (915)
++++.++|+.. ..+.++|++. ...+..+.. .......+. -++++.+.|+.+ ..+..||..+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~--~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~ 94 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA--IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK 94 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE--ECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence 44555555543 4567777632 222222221 111122222 256677777753 2477788776
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG2109 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.44 Score=55.32 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=54.7
Q ss_pred ccceeeeEeecCCCCeEEEEEcCCCCEEEEEECCC-cEEEEECCCCcee-----eEeccC-----CCcEEEEEECCCCCE
Q 002495 623 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSK-----TNLEEH-----SSLITDVRFSPSMPR 691 (915)
Q Consensus 623 ~~~~~~~~l~~H~~~V~~lafspdg~~Lasgs~Dg-~V~vwd~~t~~~~-----~~l~~h-----~~~V~~l~fspdg~~ 691 (915)
.++..+..++.|..+|..++|.+.|.+|++++..| .|.++.+....+. ..+..| ...|-.|+|+....+
T Consensus 303 ~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~ 382 (788)
T KOG2109|consen 303 DSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTI 382 (788)
T ss_pred cchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcce
Confidence 36778888999999999999999999999998765 4666654321111 111111 234567888888888
Q ss_pred EEEEeCCCe
Q 002495 692 LATSSFDKT 700 (915)
Q Consensus 692 Lasgs~Dg~ 700 (915)
++.++.+|+
T Consensus 383 r~~gsc~Ge 391 (788)
T KOG2109|consen 383 RTAGSCEGE 391 (788)
T ss_pred EeecccCCC
Confidence 888887764
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.39 E-value=3.8 Score=46.65 Aligned_cols=28 Identities=21% Similarity=0.650 Sum_probs=14.2
Q ss_pred eEEEEEcCCC---CEEEEEeCC-eEEEEECCC
Q 002495 805 IDSVCWDPSG---ELLASVSED-SVRVWTVGS 832 (915)
Q Consensus 805 V~si~~spdg---~~Las~s~d-~I~iwdl~s 832 (915)
+..++|+|+. ..|..-+.| .|||||+..
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 4455666643 233333333 666666643
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=91.20 E-value=34 Score=43.52 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=23.8
Q ss_pred eeeEeecCCCCeEEEEEcC--CC-CEE----EEEECCCcEEEEECC
Q 002495 627 EANSVRASTSKVICCHFSS--DG-KLL----ATGGHDKKAVLWHTD 665 (915)
Q Consensus 627 ~~~~l~~H~~~V~~lafsp--dg-~~L----asgs~Dg~V~vwd~~ 665 (915)
......+|...|.|..+.- ++ ++| ++.+-||.+.|=|..
T Consensus 339 tt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN 384 (1899)
T KOG4659|consen 339 TTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN 384 (1899)
T ss_pred EEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch
Confidence 3334568888888876643 22 222 234578888887754
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=91.18 E-value=17 Score=46.02 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=14.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC
Q 002495 800 GHTKPIDSVCWDPSGELLASVSE 822 (915)
Q Consensus 800 ~h~~~V~si~~spdg~~Las~s~ 822 (915)
+|-..+.++|.+|||.++++-..
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~g 681 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSG 681 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCC
Confidence 34456677777777776554443
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.9 Score=54.30 Aligned_cols=160 Identities=17% Similarity=0.261 Sum_probs=86.0
Q ss_pred CCCcEEEEECCCCceeeEeccCCCcEEEEEE--------CCCCCEEEEEeCCCeEEEEECCCCC--ceEEEe------cc
Q 002495 655 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--------SPSMPRLATSSFDKTVRVWDADNPG--YSLRTF------MG 718 (915)
Q Consensus 655 ~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~f--------spdg~~Lasgs~Dg~I~iWdl~~~~--~~~~~~------~~ 718 (915)
-|+.+.+|+.+++.....+.+-+..|..|.. -+.=++|++...--.|.|+-+.-.. .....+ ..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 5889999999998888888887777887764 3333455555555557776543211 111111 12
Q ss_pred CCCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe
Q 002495 719 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 798 (915)
Q Consensus 719 h~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l 798 (915)
....|.||....+|+ +| -+|.||. +|.+--...-..|......++.+. +.-..+. .. +..+
T Consensus 177 dg~~V~~I~~t~nGR-IF-~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~--------s~ls~lv------Ps-~~~~ 237 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGR-IF-FAGRDGN--LYELVYQAEDGWFGSRCRKICLTK--------SVLSSLV------PS-LLSV 237 (1311)
T ss_pred CCceEEEEEeccCCc-EE-EeecCCC--EEEEEEeccCchhhcccccccCch--------hHHHHhh------hh-hhcC
Confidence 245678888655554 55 3455664 443311000000000000000000 0000000 00 1112
Q ss_pred -cCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECCCC
Q 002495 799 -QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 833 (915)
Q Consensus 799 -~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~s~ 833 (915)
..+.++|..++++....++.+-++. .|.+||+...
T Consensus 238 ~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 2467789999998888888888877 8999998763
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.031 Score=62.27 Aligned_cols=140 Identities=20% Similarity=0.308 Sum_probs=92.9
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC--eEEEEECCCCCCcceEEEe
Q 002495 765 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHEL 842 (915)
Q Consensus 765 ~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d--~I~iwdl~s~~~~~~i~~~ 842 (915)
...|.+.+..+++++.+..|..||-...... .+. -......++|+.++..++...+. .+.+||+.+..... +. +
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-LE-~ 114 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVIL-ELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LE-S 114 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceec-ccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-Hh-c
Confidence 3456677777777777777777775443222 111 23445578898888855554443 89999997642111 11 1
Q ss_pred ccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcc-cCCCeEEEEEeCCCCEEEEEecCCc
Q 002495 843 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-HEGLIAALAVSTETGYVASASHDKF 910 (915)
Q Consensus 843 ~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~-h~~~V~~l~~spdg~~Lasgs~Dg~ 910 (915)
.+ ...-.-+.|++.+..++.+...+.+.|++....+.+...+ |...+++++|.+.+ +++.++.|..
T Consensus 115 gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 115 GG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred cC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 11 1111125799999999999889999999999888775555 99999999999887 4555555543
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=90.90 E-value=28 Score=38.16 Aligned_cols=195 Identities=10% Similarity=0.028 Sum_probs=90.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCce---------------eeEeccCCCcEEEEEECCCC-CEEEEEe
Q 002495 634 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKS---------------KTNLEEHSSLITDVRFSPSM-PRLATSS 696 (915)
Q Consensus 634 H~~~V~~lafspdg~~Lasgs-~Dg~V~vwd~~t~~~---------------~~~l~~h~~~V~~l~fspdg-~~Lasgs 696 (915)
+...|+++...+.-+.|++-+ ....|+++++..... ....-.|......+++.... ..++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 355899999988777766655 333499999853321 01122344433333333222 2345555
Q ss_pred CCCeEEEEECCCCCceEEEec-------cCCCCeEEEEEcCCC-CeEEEEEeCCCcEEEEEcCC--CeeEE------Eee
Q 002495 697 FDKTVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINN--GSCTR------VFK 760 (915)
Q Consensus 697 ~Dg~I~iWdl~~~~~~~~~~~-------~h~~~V~sl~fsp~~-~~ll~s~s~Dg~I~iwdl~~--~~~~~------~~~ 760 (915)
...+|.++.+..+......++ .-...+..+..+++. ...++.|+..+...++++.. ..... ...
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 567777765544211111111 111233333323221 23444555433344455432 11000 000
Q ss_pred c--CceEEEEecCCCEEEEEEcCCeEEEEECCC-ce-EEEEecCCCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCC
Q 002495 761 G--GTAQMRFQPHLGRYLAAAAENVVSILDAET-QA-CRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 833 (915)
Q Consensus 761 ~--~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t-~~-~~~~l~~h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~ 833 (915)
. ...++...++ +.++.+..+. ..+.|... .. ....+. -.....++++. ..+|++...+.|.|+++.++
T Consensus 201 ~~~~p~~i~~l~~-~e~Llc~~~~-~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~--~pyll~~~~~~ievr~l~~~ 272 (302)
T smart00036 201 TSLKPISVVQVPR-DEFLLCYDEF-GVFVNLYGKRRSRNPILH-WEFMPESFAYH--SPYLLAFHDNGIEIRSIKTG 272 (302)
T ss_pred cccCceEEEEECC-CeEEEEECcE-EEEEeCCCCccccceEEE-cCCcccEEEEE--CCEEEEEcCCcEEEEECCCC
Confidence 0 1112222222 3444444443 33444432 11 111121 23445667776 46777777779999999887
|
Unpublished observations. |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.78 E-value=31 Score=38.41 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=77.3
Q ss_pred CEEEEEECCCcEEEEECCCCc----ee----eEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccC
Q 002495 648 KLLATGGHDKKAVLWHTDTLK----SK----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 719 (915)
Q Consensus 648 ~~Lasgs~Dg~V~vwd~~t~~----~~----~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h 719 (915)
.++.+|..+|-|..-+..... +. .....-.+.-..|+|...+..|++| |...-+|.+.-.+.....+..+
T Consensus 77 il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~Va--DAYlGL~~V~p~g~~a~~l~~~ 154 (376)
T KOG1520|consen 77 ILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVA--DAYLGLLKVGPEGGLAELLADE 154 (376)
T ss_pred eEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEE--ecceeeEEECCCCCcceecccc
Confidence 345666666666665552110 00 1111223556788999887666666 5566666665444443333333
Q ss_pred CCCeEEEEEcCCCCeEEEEEeCCCcEEEEEcCCCeeEEEeecCceEEEEecCCCE---EEEEEcCCeEEEEECCCceEEE
Q 002495 720 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR---YLAAAAENVVSILDAETQACRL 796 (915)
Q Consensus 720 ~~~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~~~~~~~~~~~~~~v~~sp~~~~---ll~~~~dg~I~i~D~~t~~~~~ 796 (915)
.... -+.|..+ + ....+|.|++=|..+. |... .. ++.+..+|++.-||..+.....
T Consensus 155 ~~G~-~~kf~N~---l--dI~~~g~vyFTDSSsk--------------~~~r-d~~~a~l~g~~~GRl~~YD~~tK~~~V 213 (376)
T KOG1520|consen 155 AEGK-PFKFLND---L--DIDPEGVVYFTDSSSK--------------YDRR-DFVFAALEGDPTGRLFRYDPSTKVTKV 213 (376)
T ss_pred ccCe-eeeecCc---e--eEcCCCeEEEeccccc--------------cchh-heEEeeecCCCccceEEecCcccchhh
Confidence 2221 1333311 1 1222444544443221 1110 11 2223346888899988765433
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEeCC
Q 002495 797 SLQGHTKPIDSVCWDPSGELLASVSED 823 (915)
Q Consensus 797 ~l~~h~~~V~si~~spdg~~Las~s~d 823 (915)
.+. .-.-.+.|+.++|+.+++.+-..
T Consensus 214 Lld-~L~F~NGlaLS~d~sfvl~~Et~ 239 (376)
T KOG1520|consen 214 LLD-GLYFPNGLALSPDGSFVLVAETT 239 (376)
T ss_pred hhh-cccccccccCCCCCCEEEEEeec
Confidence 222 23345678999999988877655
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.64 E-value=38 Score=41.36 Aligned_cols=260 Identities=15% Similarity=0.072 Sum_probs=0.0
Q ss_pred CeEEEEEcCCCCEEEEEECC---------CcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCe--EEEEE
Q 002495 637 KVICCHFSSDGKLLATGGHD---------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT--VRVWD 705 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~D---------g~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~--I~iWd 705 (915)
.+....+++++..++..... ..+.+.|... .....+...+..+.|+|++..++..+.++. ..+|-
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l 89 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYL 89 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEEeccc----ccccccCCcccccccCCCCCEEEEEeccCCCcceEEE
Q ss_pred CCCCCceEEEeccCCCCeEEEEEcCCCCeEEE---------EEe-----------------CCCcEEEEEcC-CCeeEEE
Q 002495 706 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC---------SCD-----------------GDGEIRYWSIN-NGSCTRV 758 (915)
Q Consensus 706 l~~~~~~~~~~~~h~~~V~sl~fsp~~~~ll~---------s~s-----------------~Dg~I~iwdl~-~~~~~~~ 758 (915)
+...+ .+..+...|....|++++..+++ .+. ....+.+.|.+ .......
T Consensus 90 ~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~ 165 (620)
T COG1506 90 VDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGL 165 (620)
T ss_pred EecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCcccccccC
Q ss_pred eecCceEEEEecCCCEEEEEEcCCe-------EEEEECCCceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-e------
Q 002495 759 FKGGTAQMRFQPHLGRYLAAAAENV-------VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S------ 824 (915)
Q Consensus 759 ~~~~~~~v~~sp~~~~ll~~~~dg~-------I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~------ 824 (915)
....+....+..++..++....+.. ..++.. ....+..+......+..+.|.++|+.++..+.. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~ 244 (620)
T COG1506 166 GNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE-GNGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEG 244 (620)
T ss_pred CCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec-CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCccCcccc
Q ss_pred --EEEEECCCCCCcceEEEeccCC--CceEEEEEeCCCCEEEEEEcC--CeEEEEECCCCcEEEEcccCCCeEEEEEeCC
Q 002495 825 --VRVWTVGSGSEGECVHELSCNG--NKFHSCVFHPTYPSLLVIGCY--QSLELWNMSENKTMTLTAHEGLIAALAVSTE 898 (915)
Q Consensus 825 --I~iwdl~s~~~~~~i~~~~~~~--~~i~~i~~spdg~~l~s~s~d--g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd 898 (915)
+.+++ .+...+...+.... .....+...-++..++....+ +...++++................-..|+.+
T Consensus 245 ~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~~ 321 (620)
T COG1506 245 DFILLLD---GELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVD 321 (620)
T ss_pred ceEEEEe---ccccccceeeccCCcccCcHHhccccCCCcEEEEEecCCCceEEEEEeccCCceeeecCCCceEEEEeeC
Q ss_pred CCEEEEEecC
Q 002495 899 TGYVASASHD 908 (915)
Q Consensus 899 g~~Lasgs~D 908 (915)
++.++..-..
T Consensus 322 ~~~~~~~~s~ 331 (620)
T COG1506 322 GRKLALAYSS 331 (620)
T ss_pred CCEEEEEecC
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=90.12 E-value=31 Score=37.32 Aligned_cols=214 Identities=11% Similarity=0.121 Sum_probs=114.5
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECC------CCCceEEEecc-----CCCCeEEEEEcCCCC-----------eEE
Q 002495 679 LITDVRFSPSMPRLATSSFDKTVRVWDAD------NPGYSLRTFMG-----HSASVMSLDFHPNKD-----------DLI 736 (915)
Q Consensus 679 ~V~~l~fspdg~~Lasgs~Dg~I~iWdl~------~~~~~~~~~~~-----h~~~V~sl~fsp~~~-----------~ll 736 (915)
.-+.|+|+|.+.+.++....+...+||.. .....+.++.. .....+.+.|+.... ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35678999998888888888999999997 11122333331 234577777764322 224
Q ss_pred EEEeCCCcEEEEEcCCCee-----EEEeec----Cc-eEEEEe--cCCCEEEEEEc-CCeEEEEECCCceEEEEecCCCC
Q 002495 737 CSCDGDGEIRYWSINNGSC-----TRVFKG----GT-AQMRFQ--PHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTK 803 (915)
Q Consensus 737 ~s~s~Dg~I~iwdl~~~~~-----~~~~~~----~~-~~v~~s--p~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~~ 803 (915)
+.+++||+|.-|...-+.. ...+.. .+ ..+++. ..+.+|+++.- .++|.|||-.-.+.... ....+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFID 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCccC
Confidence 5788999999998533222 112221 11 123333 22455555443 68898887653322110 00111
Q ss_pred CeEEEEEcC------CCCEEEEE--------------eCCeEEEEECCCCCCcceEEEecc--CCCceEEEEEeC-----
Q 002495 804 PIDSVCWDP------SGELLASV--------------SEDSVRVWTVGSGSEGECVHELSC--NGNKFHSCVFHP----- 856 (915)
Q Consensus 804 ~V~si~~sp------dg~~Las~--------------s~d~I~iwdl~s~~~~~~i~~~~~--~~~~i~~i~~sp----- 856 (915)
+-.-.-|.| .++++++. +.+.|-+||+.- ..+.++.. .-+.-+.++..|
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----QLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----cEEEEeccCCcccCCceeeeChhhhCC
Confidence 100001111 12222221 122577787642 34444422 223345555544
Q ss_pred -CCCEEEEEEcCCeEEEEECCCCcEE-EEcccC------CCeEEEEEeC
Q 002495 857 -TYPSLLVIGCYQSLELWNMSENKTM-TLTAHE------GLIAALAVST 897 (915)
Q Consensus 857 -dg~~l~s~s~dg~I~iwd~~~~~~~-~~~~h~------~~V~~l~~sp 897 (915)
.+..|+---.||+|..||..+++.+ .+.... ..++.|+|..
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3555555567999999999988866 443322 3567888854
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=90.08 E-value=8.5 Score=36.33 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=67.5
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCc--------eeeEeccCCCcEEEEEECC-----CCCEEEEEeCCCeEEEEE
Q 002495 639 ICCHFSSDGKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSSLITDVRFSP-----SMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 639 ~~lafspdg~~Lasgs~Dg~V~vwd~~t~~--------~~~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~I~iWd 705 (915)
..-.|......|++++.-|+|.|++..... .+..+ .-...|++|+-.+ +...|+.|+ ...|.+||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 344566666688889999999999865322 22222 3455677775433 234566665 55699999
Q ss_pred CCCCCceEEEeccCCCCeEEEEEcC---CCCeEEEEEeCCCcEEEEEcCCCeeEE
Q 002495 706 ADNPGYSLRTFMGHSASVMSLDFHP---NKDDLICSCDGDGEIRYWSINNGSCTR 757 (915)
Q Consensus 706 l~~~~~~~~~~~~h~~~V~sl~fsp---~~~~ll~s~s~Dg~I~iwdl~~~~~~~ 757 (915)
+++... ..++.-.+.|.++.+-. ....+++.| .+..|.-||.+..+...
T Consensus 80 V~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 80 VENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFW 131 (136)
T ss_pred cccCch--hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEE
Confidence 987433 23334456677776632 123344344 46777777766554443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.94 E-value=41 Score=38.45 Aligned_cols=108 Identities=13% Similarity=-0.004 Sum_probs=58.7
Q ss_pred CceEEEEecCCCEEEEEEcCCeEEEEECCCce-----EEEEecC--CCCCeEEEEEcCCCCEEEEEeCCeEEEEECCCCC
Q 002495 762 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----CRLSLQG--HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 834 (915)
Q Consensus 762 ~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~-----~~~~l~~--h~~~V~si~~spdg~~Las~s~d~I~iwdl~s~~ 834 (915)
....+.+.+++..+++ +..|.+..- ...+. ....+.. -...+..+.|.+++..+++|..+.+.+. ...++
T Consensus 282 ~l~~v~~~~dg~l~l~-g~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~ 358 (398)
T PLN00033 282 RIQNMGWRADGGLWLL-TRGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGK 358 (398)
T ss_pred ceeeeeEcCCCCEEEE-eCCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCc
Confidence 3456677766555544 455655443 22222 1122221 1235889999998888888777644333 33333
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 002495 835 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 873 (915)
Q Consensus 835 ~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iw 873 (915)
..........-...++.+.|.++++ .++.+.+|.|.-|
T Consensus 359 tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 359 SWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred ceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 3222222222244577888876654 5666677776554
|
|
| >KOG2006 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.91 E-value=2.5 Score=51.86 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=53.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECC--CCceeeEe---ccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNL---EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 637 ~V~~lafspdg~~Lasgs~Dg~V~vwd~~--t~~~~~~l---~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~ 708 (915)
.-.|+.....+.++++|..-|.+.+|+.+ ++..+... .+++-.+..+.|.|+.+.++.+-.-|...+|....
T Consensus 150 DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g 226 (1023)
T KOG2006|consen 150 DAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQG 226 (1023)
T ss_pred cceeeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEecccc
Confidence 34566667788899999999999999876 33322222 23444778889999999999998888899997653
|
|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=89.73 E-value=65 Score=40.46 Aligned_cols=259 Identities=9% Similarity=0.057 Sum_probs=127.8
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCce---------eeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCC---
Q 002495 641 CHFSSDGKLLATGGHDKKAVLWHTDTLKS---------KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--- 708 (915)
Q Consensus 641 lafspdg~~Lasgs~Dg~V~vwd~~t~~~---------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~--- 708 (915)
-.+-++...+++-+.+|.|+-.++.+... ...++. .+.+..+........|+..+.+|.+.......
T Consensus 490 edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~ 568 (800)
T TIGR01063 490 EDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPE 568 (800)
T ss_pred hhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcC
Confidence 34455667788889999998876653321 111222 34455555555666777777778776654432
Q ss_pred C-----CceE---EEeccCCCCeEEEEEcC-CCCeEEEEEeCCCcEEEEEcCCCeeE-------EEeecC--ceEEEEec
Q 002495 709 P-----GYSL---RTFMGHSASVMSLDFHP-NKDDLICSCDGDGEIRYWSINNGSCT-------RVFKGG--TAQMRFQP 770 (915)
Q Consensus 709 ~-----~~~~---~~~~~h~~~V~sl~fsp-~~~~ll~s~s~Dg~I~iwdl~~~~~~-------~~~~~~--~~~v~~sp 770 (915)
. +..+ ..+.....-|.++.+.. +...+++..+.+|.|+..++...... ..++.+ ...+....
T Consensus 569 ~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~ 648 (800)
T TIGR01063 569 ASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTS 648 (800)
T ss_pred CCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeC
Confidence 1 1111 11222222344444322 12234557888999998887543211 111111 22223333
Q ss_pred CCCEEEEEEcCCeEEEEECCC---------ceEEEEecCCCCCeEEEEEcCCCCEEEEEeCC-eEEEEECC---CC---C
Q 002495 771 HLGRYLAAAAENVVSILDAET---------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG---SG---S 834 (915)
Q Consensus 771 ~~~~ll~~~~dg~I~i~D~~t---------~~~~~~l~~h~~~V~si~~spdg~~Las~s~d-~I~iwdl~---s~---~ 834 (915)
....+++.+..|.+..+.+.. |.....+.. .+.|.++....+..+++..+.. .++...+. .. .
T Consensus 649 ~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~ 727 (800)
T TIGR01063 649 GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKN-EDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG 727 (800)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCC-CCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC
Confidence 445677777778766665432 122222222 2335444444444444444444 56665543 11 1
Q ss_pred CcceEEEeccCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEEcccCCCeEEEEEeCCCCEEEE
Q 002495 835 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 904 (915)
Q Consensus 835 ~~~~i~~~~~~~~~i~~i~~spdg~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~Las 904 (915)
.......+......+..+....+...++..+.+|.+..++..+-... ..-...|..+....+ ..+++
T Consensus 728 kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~~--gR~a~GVk~i~L~~~-D~vv~ 794 (800)
T TIGR01063 728 KGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSEQ--GRNTQGVRLIRLDED-DKLVS 794 (800)
T ss_pred cceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCcc--ccCCCCeeeeeeCCC-CEEEE
Confidence 11222233332344444444445556777788887777776542221 122334666666433 34443
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.67 E-value=3.5 Score=49.76 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=75.0
Q ss_pred CeEEEEEcC--CCCEEEEEECCCcEEEEECCC-------C-------------ceeeEeccCCCcEEEEEEC--CCCCEE
Q 002495 637 KVICCHFSS--DGKLLATGGHDKKAVLWHTDT-------L-------------KSKTNLEEHSSLITDVRFS--PSMPRL 692 (915)
Q Consensus 637 ~V~~lafsp--dg~~Lasgs~Dg~V~vwd~~t-------~-------------~~~~~l~~h~~~V~~l~fs--pdg~~L 692 (915)
.|+-|.... +..+|+.|.+||.|.+|.+++ . ++...+. ....+++|+++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 355544433 446899999999999997631 0 0111222 34578999998 778888
Q ss_pred EEEeCCCeEEEEECCCC--CceEEEeccCCCCeEEEEEcCCC--C---eEEEEEeCCCcEEEEEc
Q 002495 693 ATSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNK--D---DLICSCDGDGEIRYWSI 750 (915)
Q Consensus 693 asgs~Dg~I~iWdl~~~--~~~~~~~~~h~~~V~sl~fsp~~--~---~ll~s~s~Dg~I~iwdl 750 (915)
|+++....|.||-+... ......-..|...|-+|+|.++. . ..+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888765431 11111122366789999998764 1 26778888999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=89.47 E-value=9.8 Score=35.95 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=46.1
Q ss_pred CCCeEEEE---EcC--CCCEEEEEeCCeEEEEECCCCCCcceEEEeccCCCceEEEEEe---CCCCEEEEEEcCCeEEEE
Q 002495 802 TKPIDSVC---WDP--SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFH---PTYPSLLVIGCYQSLELW 873 (915)
Q Consensus 802 ~~~V~si~---~sp--dg~~Las~s~d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s---pdg~~l~s~s~dg~I~iw 873 (915)
...|++|+ |.+ +...|+.|+...|..||+..... ...+++ ...+.++.+- ....-++..+.+..|.-|
T Consensus 47 n~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d-~Fyke~---~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gf 122 (136)
T PF14781_consen 47 NQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSD-LFYKEV---PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGF 122 (136)
T ss_pred CCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCch-hhhhhC---ccceeEEEEEecCCCCCcEEEECceEEEEEe
Confidence 34566654 432 35588899988999999976532 111222 3455555543 223446666666778888
Q ss_pred ECCCCcEE
Q 002495 874 NMSENKTM 881 (915)
Q Consensus 874 d~~~~~~~ 881 (915)
|....+.+
T Consensus 123 d~~G~e~f 130 (136)
T PF14781_consen 123 DYEGNEIF 130 (136)
T ss_pred CCCCcEEE
Confidence 87766655
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=89.36 E-value=68 Score=40.20 Aligned_cols=156 Identities=13% Similarity=0.199 Sum_probs=91.6
Q ss_pred cCCCCeEEEEEc---C----CCCEEEEEECCCcEEEEECC------C---------CceeeEecc---CCCcEEEEEECC
Q 002495 633 ASTSKVICCHFS---S----DGKLLATGGHDKKAVLWHTD------T---------LKSKTNLEE---HSSLITDVRFSP 687 (915)
Q Consensus 633 ~H~~~V~~lafs---p----dg~~Lasgs~Dg~V~vwd~~------t---------~~~~~~l~~---h~~~V~~l~fsp 687 (915)
.-..+|..|+|. . ..++|++= ....+.|+... . ...+..+.. -..+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 346688888888 2 12355554 45566676621 1 122333332 244688999998
Q ss_pred -CCCEEEEEeCCCeEEEEECCC----CCceEEEeccCCC----------CeEEEEEcCCCCeEEEEEeCCCcEEEEEcCC
Q 002495 688 -SMPRLATSSFDKTVRVWDADN----PGYSLRTFMGHSA----------SVMSLDFHPNKDDLICSCDGDGEIRYWSINN 752 (915)
Q Consensus 688 -dg~~Lasgs~Dg~I~iWdl~~----~~~~~~~~~~h~~----------~V~sl~fsp~~~~ll~s~s~Dg~I~iwdl~~ 752 (915)
+...||+....|...|||+.. ....+.....+.+ ....|.|..+...+| .++ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence 556899999999999999921 1111222212222 234688987766666 444 57889999998
Q ss_pred CeeEE-Eee----cCceEEEEecCCCEEEEEEcCCeEEEEECCC
Q 002495 753 GSCTR-VFK----GGTAQMRFQPHLGRYLAAAAENVVSILDAET 791 (915)
Q Consensus 753 ~~~~~-~~~----~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t 791 (915)
..... ... ..+..+.-++.+...+..-....|..+|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 76533 211 1334455555533333333446777778776
|
These proteins are found in fungi. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.21 E-value=2.4 Score=44.16 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=0.0
Q ss_pred eeEEEeecCceEEEEecCCCEEEEEEcCCeEEEEECCCceEEEEe------c--------CCCCCeEEEEEcCCCCEEEE
Q 002495 754 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL------Q--------GHTKPIDSVCWDPSGELLAS 819 (915)
Q Consensus 754 ~~~~~~~~~~~~v~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l------~--------~h~~~V~si~~spdg~~Las 819 (915)
..+..+.-+...+.+...+.++++.+.+|.+++||+.+.+++..- - .....|..+.++.+|.-|++
T Consensus 4 rl~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ 83 (219)
T PF07569_consen 4 RLLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT 83 (219)
T ss_pred cccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE
Q ss_pred EeCCeEEEEECC
Q 002495 820 VSEDSVRVWTVG 831 (915)
Q Consensus 820 ~s~d~I~iwdl~ 831 (915)
-+.+..+.|+..
T Consensus 84 lsng~~y~y~~~ 95 (219)
T PF07569_consen 84 LSNGDSYSYSPD 95 (219)
T ss_pred EeCCCEEEeccc
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=89.10 E-value=17 Score=42.81 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCEEEEE---ECCCcEEEEECCCCceeeEeccCCCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCCceEEEeccCCCC
Q 002495 646 DGKLLATG---GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS 722 (915)
Q Consensus 646 dg~~Lasg---s~Dg~V~vwd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~iWdl~~~~~~~~~~~~h~~~ 722 (915)
++-++++. ...+.+.++| .+|..+..+.........+.+.++|.+++... ..++.+|+. ++.+..+.-....
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--G~v~~~~~l~~~~ 188 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--GKVIWEYDLPGGY 188 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTE
T ss_pred CcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--CCEEEeeecCCcc
Q ss_pred ---eEEEEEcCCCCeEEEEEe-------------CCCcEEEEEcCCCeeEEEe----------e----------------
Q 002495 723 ---VMSLDFHPNKDDLICSCD-------------GDGEIRYWSINNGSCTRVF----------K---------------- 760 (915)
Q Consensus 723 ---V~sl~fsp~~~~ll~s~s-------------~Dg~I~iwdl~~~~~~~~~----------~---------------- 760 (915)
=.++.+.|+|+.|+++.. .|. |..+| .+|+.+..+ .
T Consensus 189 ~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~ 266 (477)
T PF05935_consen 189 YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGG 266 (477)
T ss_dssp E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SST
T ss_pred cccccccEECCCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCC
Q ss_pred ----cCceEEEEecCCCEEEEEEcCC-eEEEEECCCceEEEEecCCCCC
Q 002495 761 ----GGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKP 804 (915)
Q Consensus 761 ----~~~~~v~~sp~~~~ll~~~~dg-~I~i~D~~t~~~~~~l~~h~~~ 804 (915)
.|..++.+.+.++.|++++..- .|..+|.++++....+..+...
T Consensus 267 ~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 267 GRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp TSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT-
T ss_pred CCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCC
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 915 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-27 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-20 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-20 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 8e-20 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 8e-20 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 4e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 9e-20 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 9e-20 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-19 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-19 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-19 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-19 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-19 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-19 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-07 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-19 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-19 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 8e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-19 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 7e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 7e-18 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-17 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-17 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-17 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 7e-17 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 5e-16 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-14 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-07 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-14 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 5e-14 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 4e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 5e-14 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 7e-14 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-04 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 8e-14 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 3e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-13 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-08 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 5e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 3e-13 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 4e-13 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 9e-08 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-04 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-11 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-11 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 4e-09 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-11 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-11 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-11 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-11 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-10 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-05 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-10 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-06 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-09 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 7e-04 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-09 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 6e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-09 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 7e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-09 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 9e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-09 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 7e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-09 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 5e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 3e-09 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 2e-08 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 4e-09 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-07 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 4e-09 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-07 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 4e-09 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 3e-07 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 3e-08 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 4e-08 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-05 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 5e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 5e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 6e-04 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 8e-08 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 4e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-07 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 1e-07 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 3e-07 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 6e-07 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 6e-07 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-06 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-06 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 6e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 3e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 8e-06 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-05 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-05 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 3e-05 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 6e-05 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 2e-04 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 2e-04 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 9e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 915 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-35 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-33 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-22 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-21 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-27 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-23 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-17 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-20 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-19 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-16 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-18 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-15 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-17 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.003 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-16 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-16 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-16 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-16 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-15 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-14 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-14 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-12 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-12 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-10 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 9e-09 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-08 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 2e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 4e-07 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 5e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-05 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 6e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 0.002 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-09 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 7e-07 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-08 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.003 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-06 | |
| d1od5a1 | 245 | b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea | 2e-06 | |
| d1od5a1 | 245 | b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea | 0.004 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.004 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-04 | |
| g1pnb.1 | 106 | a.52.1.3 (A:,B:) Napin BNIb {Rape (Brassica napus) | 5e-04 | |
| d1fxza1 | 239 | b.82.1.2 (A:10-248) Seed storage 7S protein {Soybe | 6e-04 | |
| d1bf5a1 | 181 | a.47.1.1 (A:136-316) STAT-1, coiled coil domain {H | 0.002 | |
| d1bf5a1 | 181 | a.47.1.1 (A:136-316) STAT-1, coiled coil domain {H | 0.002 | |
| d2crua1 | 105 | a.5.6.1 (A:8-112) Programmed cell death protein 5 | 0.002 | |
| d1psya_ | 125 | a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricin | 0.002 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 134 bits (337), Expect = 5e-35
Identities = 59/340 (17%), Positives = 122/340 (35%), Gaps = 11/340 (3%)
Query: 580 ELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVI 639
+LR + ++L + D ++ D V + + ++R +K+
Sbjct: 6 QLRQEAEQLKN--QIRDARKA---CADATLSQITNNIDPVGR-IQMRTRRTLRGHLAKIY 59
Query: 640 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 699
H+ +D +LL + D K ++W + T + SS + ++PS +A D
Sbjct: 60 AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119
Query: 700 TVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 756
+++ + R GH+ + F + + S D + + T
Sbjct: 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179
Query: 757 RVFKGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 815
G R + + + D CR + GH I+++C+ P+G
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 816 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 875
A+ S+D+ + + S F + LL + +W+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 876 -SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914
++ L H+ ++ L V+ + VA+ S D F+K+W
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.4 bits (181), Expect = 9e-15
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 636 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 695
+ FS G+LL G D +W L H + ++ + + +AT
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 696 SFDKTVRVWD 705
S+D +++W+
Sbjct: 331 SWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.6 bits (179), Expect = 2e-14
Identities = 36/221 (16%), Positives = 68/221 (30%), Gaps = 43/221 (19%)
Query: 655 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 714
D LW +T + T H+ + + +P + + D + ++WD G +
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQ 220
Query: 715 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGR 774
TF GH + + ++ F PN + + D R + +
Sbjct: 221 TFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQEL------------------ 261
Query: 775 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 833
S I SV + SG LL + +D + VW
Sbjct: 262 -------------------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 834 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 874
+ L+ + N+ ++ L++WN
Sbjct: 303 ---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.6 bits (96), Expect = 3e-04
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 663
A + ++V C + DG +ATG D +W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 127 bits (319), Expect = 8e-33
Identities = 74/315 (23%), Positives = 125/315 (39%), Gaps = 30/315 (9%)
Query: 626 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 685
E ++ S V F ++ + D +W +T + L+ H+ + D+ F
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 686 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 745
S LA+ S D T+++WD RT GH +V S+ PN D I S D I
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECI-RTMHGHDHNVSSVSIMPN-GDHIVSASRDKTI 125
Query: 746 RYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 802
+ W + G C + F G +R + + + V + T+ C+ L+ H
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185
Query: 803 KPIDSVCW--------------------DPSGELLASVSED-SVRVWTVGSGSEGECVHE 841
++ + W G L S S D ++++W S G C+
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW---DVSTGMCLMT 242
Query: 842 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG 900
L + N +FH +L ++L +W+ + M TL AHE + +L
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302
Query: 901 YVASASHDKFVKLWK 915
YV + S D+ VK+W+
Sbjct: 303 YVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 96.0 bits (237), Expect = 4e-22
Identities = 43/226 (19%), Positives = 72/226 (31%), Gaps = 62/226 (27%)
Query: 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 683
+ + V + DG L+A+ +D+ +W T + K L EH ++ +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 684 RF--------------------SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV 723
+ P L + S DKT+++WD G L T +GH V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV 250
Query: 724 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 783
+ FH I SC D +R W N C +
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLN----------------------- 286
Query: 784 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 828
H + S+ + + + + S D +V+VW
Sbjct: 287 ----------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.8 bits (234), Expect = 1e-21
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 3/164 (1%)
Query: 586 DRLVEDGSLDDNVESFLSHDDTDPRD-AGGRGMDVSQGFSFKEANSVRASTSKVICCHFS 644
L+ S D V ++ + R + ++ + + S + +
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214
Query: 645 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 704
G L +G DK +W T L H + + V F + + + DKT+RVW
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
Query: 705 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 748
D N ++T H V SLDFH + + D ++ W
Sbjct: 275 DYKN-KRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.7 bits (187), Expect = 1e-15
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 683
+ ++ + V F S GK + + DK +W + L H +T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
Query: 684 RFSPSMPRLATSSFDKTVRVWD 705
F + P + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.5 bits (93), Expect = 7e-04
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 871 ELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914
+ W + L+ H + + + SAS D +K+W
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 112 bits (280), Expect = 4e-27
Identities = 72/324 (22%), Positives = 115/324 (35%), Gaps = 44/324 (13%)
Query: 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------------------H 676
TS V C FS+DG+ LATG +K ++ L +
Sbjct: 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 677 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 736
I V FSP LAT + D+ +R+WD +N + F +
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 737 CSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA-AENVVSILDAETQACR 795
S D I S T + G + P G+Y+AA + V + D+ET
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 796 LSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE---------GEC 838
L GH + SV + G+ + S S D SV++W + + + G C
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 839 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMTLTAHEGLIAALAVST 897
+ + S +L + + W+ S N + L H + ++AV+
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360
Query: 898 ------ETGYVASASHDKFVKLWK 915
E A+ S D ++WK
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.2 bits (201), Expect = 4e-17
Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 53/210 (25%)
Query: 640 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSMPRL 692
DGK +A G D+ +W ++T L+ H + V F+ +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 693 ATSSFDKTVRVWDADNPG-----------YSLRTFMGHSASVMSLDFHPNKDDLICSCDG 741
+ S D++V++W+ N T++GH V+S+ N D+ I S
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILSGSK 328
Query: 742 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH 801
D + +W +G+ + +G H ++ A N
Sbjct: 329 DRGVLFWDKKSGNPLLMLQG---------HRNSVISVAVAN------------------- 360
Query: 802 TKPIDSVCWDPSGELLASVSED-SVRVWTV 830
P + A+ S D R+W
Sbjct: 361 -----GSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.6 bits (197), Expect = 1e-16
Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 627 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----------- 675
E S V F+ DG+ + +G D+ LW+ +K++ +
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 676 -HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--- 731
H + V + + + + S D+ V WD + G L GH SV+S+
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVISVAVANGSSL 364
Query: 732 --KDDLICSCDGDGEIRYWSI 750
+ ++ + GD + R W
Sbjct: 365 GPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 5e-10
Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 27/232 (11%)
Query: 686 SPSMPRLATSSFDKTVRVWDADNPGY---SLRTFMGHSASVMSLDFHPNKDDLICSCDGD 742
S S+P + +++ P L + H++ V + F + + L C+
Sbjct: 25 SQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT 84
Query: 743 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 802
+ + +++GS +A + +L S
Sbjct: 85 --TQVYRVSDGSLVARLSDDSAANKDPENL---------------------NTSSSPSSD 121
Query: 803 KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 862
I SVC+ P G+ LA+ +ED + + + + + + F +
Sbjct: 122 LYIRSVCFSPDGKFLATGAEDRL-IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 863 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914
G + ++TL+ +G+ + Y+A+ S D+ V++W
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (250), Expect = 1e-23
Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 18/295 (6%)
Query: 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 683
K ++ VI C G + +G D +W T K L H+ +
Sbjct: 5 ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63
Query: 684 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 743
+ ++ + + ++ + + S D
Sbjct: 64 QMRDNII------ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 744 EIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHT 802
+R W I G C V G A +R + GR + + A +V + D ET+ C +LQGHT
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 803 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 861
+ S+ +D G + S S D S+RVW V G C+H L+ + + L
Sbjct: 178 NRVYSLQFD--GIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKDNI--L 230
Query: 862 LVIGCYQSLELWNMSENKTMTLTAHEGL--IAALAVSTETGYVASASHDKFVKLW 914
+ ++++W++ + + A + +V ++S D VKLW
Sbjct: 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.6 bits (202), Expect = 2e-17
Identities = 35/203 (17%), Positives = 76/203 (37%), Gaps = 20/203 (9%)
Query: 640 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 699
DG+ + +G +D +W +T L+ H++ + ++F + + S D
Sbjct: 140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDT 197
Query: 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 759
++RVWD + + T GH + ++ N ++ S + D ++ W I G C +
Sbjct: 198 SIRVWDVETG-NCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTL 253
Query: 760 KGGTA----QMRFQPHLGRYLAAAAENVVSILDAETQAC-----RLSLQGHTKPIDSVCW 810
+G Q + + ++ + V + D +T L G + +
Sbjct: 254 QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313
Query: 811 DPSGELLASVSED-----SVRVW 828
+ + A S + + V
Sbjct: 314 SNTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 3e-09
Identities = 45/254 (17%), Positives = 81/254 (31%), Gaps = 53/254 (20%)
Query: 704 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 763
W S + GH V++ + I S D ++ WS G C R G T
Sbjct: 1 WRR-GELKSPKVLKGHDDHVITC-LQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57
Query: 764 AQ-----------------------------------------MRFQPHLGRYLAAAAEN 782
H R ++ + +
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 783 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL 842
+ + D ET C L GH + +++ + V+VW C+H L
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAV-RCVQYDGRRVVSGAYDFMVKVWDP---ETETCLHTL 173
Query: 843 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTAHEGLIAALAVSTETGY 901
+ N+ +S F + ++ S+ +W++ TLT H+ L + + +
Sbjct: 174 QGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNI 229
Query: 902 VASASHDKFVKLWK 915
+ S + D VK+W
Sbjct: 230 LVSGNADSTVKIWD 243
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 9e-09
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATS 695
+ + +L +G D +W T + L+ + + V TS
Sbjct: 217 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276
Query: 696 SFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLIC-SCDG--DGEIRY 747
S D TV++WD G +R + G V + K S +G + ++
Sbjct: 277 SDDGTVKLWDLKT-GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 335
Query: 748 WSIN 751
+
Sbjct: 336 LDFD 339
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.9 bits (221), Expect = 3e-20
Identities = 49/301 (16%), Positives = 101/301 (33%), Gaps = 33/301 (10%)
Query: 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 689
R+ TSK + C D + + +G D +W +TL+ K L H+ + +++ +
Sbjct: 9 HCRSETSKGVYC-LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
Query: 690 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 749
+ + ++ + ++ +C D I W
Sbjct: 68 I------ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 750 INNGSCTRVFKGG----TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI 805
+ + + + + A ++A+ + + + + T +L GH + I
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 806 DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 864
C L+ S S D ++R+W + EC L +V
Sbjct: 182 A--CLQYRDRLVVSGSSDNTIRLWDI------ECGACLRVLEGHEELVRCIRFDNKRIVS 233
Query: 865 GCYQ-SLELWNMSENKTM----------TLTAHEGLIAALAVSTETGYVASASHDKFVKL 913
G Y +++W++ TL H G + L + S+SHD + +
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI 291
Query: 914 W 914
W
Sbjct: 292 W 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 1e-10
Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 8/204 (3%)
Query: 713 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 772
+ S V L + I S D I+ W N C R+ G T + +
Sbjct: 8 IHCRSETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 773 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 832
R + + + + L+ H +G ++ + S+ VW + S
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 833 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLTAHEGLIA 891
++ L + + F Y ++ +++++WN S + TL H+ IA
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 182
Query: 892 ALAVSTETGYVASASHDKFVKLWK 915
L V S S D ++LW
Sbjct: 183 CLQYRDR--LVVSGSSDNTIRLWD 204
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 7e-07
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 639 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN---------LEEHSSLITDVRFSPSM 689
+ D K + +G +D K +W L EHS + ++F
Sbjct: 220 LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF- 278
Query: 690 PRLATSSFDKTVRVWD 705
++ +SS D T+ +WD
Sbjct: 279 -QIVSSSHDDTILIWD 293
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.5 bits (220), Expect = 1e-19
Identities = 45/288 (15%), Positives = 86/288 (29%), Gaps = 11/288 (3%)
Query: 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-----NLEEHSSLITDVRFSPSM 689
V S+ + + TGG +W +K+ + + I + P
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 690 PRLATSSFDKTVRVWDADNPGYSLRTFMGHS--ASVMSLDFHPNKDDLICSCDGDGEIRY 747
L T+ +WD P ++ + S A +K C DG+ +
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 748 WSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDS 807
A + G L + + +L T I S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 808 VCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 867
+ + P+GE LA E S ++L + + S F + G
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLH---VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286
Query: 868 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915
L W ++ + + + +S + Y+ + S DK +++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.9 bits (195), Expect = 2e-16
Identities = 43/283 (15%), Positives = 87/283 (30%), Gaps = 14/283 (4%)
Query: 642 HFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 700
H ++DG++ D + L H ++ V S + T
Sbjct: 16 HVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-KGC 73
Query: 701 VRVWDADNPGY----SLRTFMGHSASVMSLDFHPNKDDLICS----CDGDGEIRYWSINN 752
V+VWD +PG S + + S P+ LI ++ +
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 753 GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 812
+ + P + ++ +++ D Q QGHT +
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 813 SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 872
G L + D+ + ++ S + PT L V ++E+
Sbjct: 194 DGTKLWTGGLDN---TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Query: 873 WNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915
++++ L HE + +L + + S D + W+
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (164), Expect = 1e-12
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 636 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 695
S++ + G+ LA G + H + K L H S + ++F+ ++
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-PDKYQLHLHESCVLSLKFAYCGKWFVST 283
Query: 696 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 750
D + W G S+ S+SV+S D + D I + GD + + +
Sbjct: 284 GKDNLLNAWRTPY-GASIFQS-KESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 86.8 bits (213), Expect = 1e-18
Identities = 38/279 (13%), Positives = 78/279 (27%), Gaps = 21/279 (7%)
Query: 638 VICCHFSSDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATS 695
+ C ++ D +A ++ + ++ L+EH+ +T V ++P R+ T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 696 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 755
D+ VW + + + G I +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 756 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 815
V K +R ++L + + L + + +
Sbjct: 130 WWVCKHIKKPIRS----------------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK 173
Query: 816 LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 875
V E GE + E S + H F + + ++ L +
Sbjct: 174 ---EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230
Query: 876 SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914
+ + A E L + +A HD F L+
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF 269
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.1 bits (185), Expect = 3e-15
Identities = 39/323 (12%), Positives = 98/323 (30%), Gaps = 32/323 (9%)
Query: 621 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW--HTDTLKSKTNLEEHSS 678
G + + + ++ +V ++ D + T G D+ A +W T K + +
Sbjct: 37 SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 96
Query: 679 LITDVRFSPSMPRLATSSFDKTVRVWD--ADNPGYSLRTFMGHSASVMSLDFHPNKDDLI 736
VR++P+ + A S + + + +N + + S + L+
Sbjct: 97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 156
Query: 737 CSCDGDGEIRYWSINNGSCTRV---------------------FKGGTAQMRFQPHLGRY 775
+ D + R +S G + F + R
Sbjct: 157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 216
Query: 776 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 835
+ ++ V + DA+ + +L T P+ +V + L+A+ + ++T S +
Sbjct: 217 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA- 275
Query: 836 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV 895
+ + + + H+ ++ ++V
Sbjct: 276 --GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV 333
Query: 896 STETGY----VASASHDKFVKLW 914
+ + D + +W
Sbjct: 334 LSGGKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.1 bits (154), Expect = 2e-11
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 640 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 699
F ++ L+A G HD VL+ D+ K + + R + DK
Sbjct: 248 AVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 306
Query: 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGS 754
+ G L + H SV + K C+ DG + W + +
Sbjct: 307 KASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 799 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 857
+PI W+ +A + V ++ SG++ VHEL + + + P
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 858 YPSLLVIGCYQSLELWNM 875
++ G ++ +W +
Sbjct: 63 SNRIVTCGTDRNAYVWTL 80
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Query: 643 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP----SMPRLATSSFD 698
DKKA H + ++ + + T+ D
Sbjct: 292 QRGLTARERFQNLDKKASSE-GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350
Query: 699 KTVRVWDADNPGYSLRTF 716
+ +WD + +L+
Sbjct: 351 GGMSIWDVRSLESALKDL 368
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 82.3 bits (201), Expect = 1e-17
Identities = 50/285 (17%), Positives = 92/285 (32%), Gaps = 6/285 (2%)
Query: 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLA 693
+ S+DGK L + + W T S + + H+++IT ++ S L
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT-TSKGDLF 70
Query: 694 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 753
T S+D ++V A G + + S L + D I I +S
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 754 SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 813
+ + + + V + + H I SV + +
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 814 GELLASVS-EDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 872
G L + V ++V + E + + + K + P L S+ +
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250
Query: 873 WNM---SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914
WNM S++ + AH + + SA D +K W
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 65.0 bits (156), Expect = 8e-12
Identities = 29/247 (11%), Positives = 63/247 (25%), Gaps = 8/247 (3%)
Query: 673 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN 731
H+ IT + S L ++ + + WD G S R F H+ + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSK 66
Query: 732 KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET 791
D + + D ++ L
Sbjct: 67 GD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124
Query: 792 QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHS 851
+ + S + + +V +V + + + S
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184
Query: 852 CVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVST----ETGYVASASH 907
F L+ + + ++++ N + T A + +A+ S
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244
Query: 908 DKFVKLW 914
D V +W
Sbjct: 245 DNSVIVW 251
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.2 bits (128), Expect = 2e-08
Identities = 20/163 (12%), Positives = 39/163 (23%), Gaps = 39/163 (23%)
Query: 713 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 772
+ GH+ ++ +L + + S D +G I W I+ G RVF
Sbjct: 5 DQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPD----------- 52
Query: 773 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 832
H I + G+L +D ++V G
Sbjct: 53 ---------------------------VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 85
Query: 833 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 875
+ ++ + +
Sbjct: 86 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.1 bits (107), Expect = 9e-06
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 640 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITDVRFSPSMPRLATSSF 697
C +S D LATG D ++W+ + H+ + + + ++
Sbjct: 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288
Query: 698 DKTVRVWD 705
D ++ W+
Sbjct: 289 DSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 0.003
Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 5/107 (4%)
Query: 728 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 787
D + + + + A + + P R + +N V +
Sbjct: 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 251
Query: 788 DAETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 830
+ + + ++SV W + + S +D +++ W V
Sbjct: 252 NMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 297
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.9 bits (195), Expect = 1e-16
Identities = 35/307 (11%), Positives = 70/307 (22%), Gaps = 29/307 (9%)
Query: 638 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRLAT 694
+ LL D ++ D +L + + F +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 695 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 754
+ + S + + A++ DD + + DG I N
Sbjct: 74 VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133
Query: 755 CTRVFKGGT---------AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--- 802
+ + R + + V +
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193
Query: 803 -KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE------------GECVHELSCNGNK 848
+ D E A S D V V + + +
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253
Query: 849 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 908
+S F P + L G + WN+ K + A + + ++ + A+ D
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313
Query: 909 KFVKLWK 915
K
Sbjct: 314 DTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.4 bits (191), Expect = 5e-16
Identities = 33/272 (12%), Positives = 67/272 (24%), Gaps = 30/272 (11%)
Query: 673 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHP 730
+ I+D++ PS L +S+D ++ V+ D L + + ++ +F
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 731 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVV------ 784
N D I GEI + + A +
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 785 ----SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGECV 839
+ D L+ D + L +S V+ + + +
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 840 HELSCNGNKFHSCVFHPTYPSLLVIGCY-----------------QSLELWNMSENKTMT 882
E S + P S +
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 883 LTAHEGLIAALAVSTETGYVASASHDKFVKLW 914
T + ++ S ++ +A D + W
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 4e-08
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 640 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 699
FS K L T G D W+ T K N + + + V+ + S L ++ D
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDD 314
Query: 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 731
T + A + +T +++S+ + + N
Sbjct: 315 TFKTNAAID-----QTIELNASSIYIIFDYEN 341
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 11/169 (6%), Positives = 33/169 (19%), Gaps = 37/169 (21%)
Query: 713 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 772
++ + + P+ L+ DG + + + +
Sbjct: 4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQ----------- 51
Query: 773 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGS 832
+ P+ + + +L V + V
Sbjct: 52 -------------------------SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86
Query: 833 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 881
+ N + L+ +E+ +
Sbjct: 87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.9 bits (195), Expect = 2e-16
Identities = 45/310 (14%), Positives = 93/310 (30%), Gaps = 33/310 (10%)
Query: 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 689
++R + VI C + + TG DK ++ + K L H + ++++
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 690 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 749
L + S D+TVRVWD + +S I + D + W
Sbjct: 66 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124
Query: 750 INNGSCTRVFKGGTAQ------------------------MRFQPHLGRYLAAAAENVVS 785
+ S H ++ + +N +
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 184
Query: 786 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 844
+ D C L GHT I S +D + S S D ++R+W + +G + +
Sbjct: 185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244
Query: 845 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVAS 904
V + + + + H ++A+ + +
Sbjct: 245 LVGLLRLSDKFL------VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 298
Query: 905 ASHDKFVKLW 914
+ + ++
Sbjct: 299 SGSENQFNIY 308
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 9e-09
Identities = 6/72 (8%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 680 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSC 739
++ + + S + +++ + + + + S++F L+ +
Sbjct: 284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAAV 341
Query: 740 DGDGEIRYWSIN 751
+ DG+ ++
Sbjct: 342 EKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 6e-08
Identities = 18/126 (14%), Positives = 44/126 (34%), Gaps = 11/126 (8%)
Query: 795 RLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853
R +L+GH + + C + + ++D +RV+ + + + +LS + +
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSIN---KKFLLQLSGHDGGVWALK 60
Query: 854 FHPTYPSLLVIG----CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 909
+ +LV G + ++ + Y+ + S D
Sbjct: 61 YAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 910 FVKLWK 915
+ +WK
Sbjct: 119 TLHVWK 124
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 4e-07
Identities = 42/250 (16%), Positives = 77/250 (30%), Gaps = 10/250 (4%)
Query: 631 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 690
V S + + G + L ++ + + VR
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171
Query: 691 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 750
+ S + L GH+ + S + + I + D IR W +
Sbjct: 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM-DTTIRIWDL 230
Query: 751 NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 810
NG +G TA + ++L +AA + R HT +
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290
Query: 811 DPSGELLASVSEDSVRVWTVGSGSEGECVH-ELSCNGNKFHSCVFHPTYPSLLVIGCYQS 869
S +L S SE+ ++ + S G+ VH + + ++ S F L+
Sbjct: 291 YVSDNILVSGSENQFNIYNLRS---GKLVHANILKDADQIWSVNFKGKT--LVAAVEKDG 345
Query: 870 ---LELWNMS 876
LE+ + S
Sbjct: 346 QSFLEILDFS 355
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 78.4 bits (191), Expect = 3e-16
Identities = 48/291 (16%), Positives = 95/291 (32%), Gaps = 14/291 (4%)
Query: 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS 696
+ + G + + +L EHS T + SPS A+
Sbjct: 19 TAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 697 FDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 755
VR+WD + L+T + S V + + + +G + + +
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 137
Query: 756 TRVFKGGTA-----QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 810
+ G A R ++ + +N V+I + + + HTK + SV +
Sbjct: 138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197
Query: 811 DPSGELLASVSEDSVRVWTVGSGSEGECVH-----ELSCNGNKFHSCVFHPTYPSLLVIG 865
+P G L AS D V G V + + + P +
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257
Query: 866 CYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 914
+++++WN++ K T+ + L + + S S + F+
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.4 bits (134), Expect = 6e-09
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 640 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLATSSFD 698
+S DG +A+ DK +W+ TLK + + + + + + L + S +
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302
Query: 699 KTVRVWDAD 707
+ + +
Sbjct: 303 GFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.3 bits (118), Expect = 5e-07
Identities = 32/256 (12%), Positives = 69/256 (26%), Gaps = 18/256 (7%)
Query: 635 TSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 692
+ + S G A+G + T KT + S + D+ + R+
Sbjct: 58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117
Query: 693 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 752
A + + + A M+ D
Sbjct: 118 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 177
Query: 753 G----SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-------QACRLSLQGH 801
S +R+ P + + + + + + + L H
Sbjct: 178 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 237
Query: 802 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYP 859
+ + + W P G +AS S D ++++W V + + + + T
Sbjct: 238 SGSVFGLTWSPDGTKIASASADKTIKIWNVAT---LKVEKTIPVGTRIEDQQLGIIWTKQ 294
Query: 860 SLLVIGCYQSLELWNM 875
+L+ I + N
Sbjct: 295 ALVSISANGFINFVNP 310
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.3 bits (188), Expect = 1e-15
Identities = 34/307 (11%), Positives = 81/307 (26%), Gaps = 27/307 (8%)
Query: 636 SKVICCHFSSDGKLLATGGHDKKAV----LWHTDTLKSKTNLEEHSSLITDVRFSPSMP- 690
+ + +A V + SS++T V+FSP
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 691 -RLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDG 741
L + V VW F + + + + + +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 742 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-------ENVVSILDAETQAC 794
D + S ++G+ G + ++ + + A
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 795 RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV--WTVGSGSEGECVHELSCNGNKFHSC 852
+ + V + P ++ + SG + + +
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 853 VFHPTYPSLLVIGCYQSLELWNMSENK---TMTLTAHEGLIAALAVS-TETGYVASASHD 908
+ +G ++ +W+++ +K TL + + V T G + S S D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 909 KFVKLWK 915
+ ++
Sbjct: 318 GTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 2e-08
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 691 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDGDGEIRYW 748
+ AT D T+RVWD ++ + + + + I S DG + ++
Sbjct: 265 KFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Query: 749 SI 750
+
Sbjct: 324 EL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.6 bits (124), Expect = 1e-07
Identities = 30/266 (11%), Positives = 65/266 (24%), Gaps = 28/266 (10%)
Query: 635 TSKVICCHFS--SDGKLLATGGHDKKAVLWHTDT--------LKSKTNLEEHSSLITDVR 684
+S V FS + L +G K ++W + K+ + + I+D+
Sbjct: 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122
Query: 685 FSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 742
+ RL D D+ + D
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182
Query: 743 GEIRYWSINNGSC---------TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 793
+ Y + + + + E
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242
Query: 794 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF--H 850
Q + + A+V D ++RVW V + +CV + + + +
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT---SKCVQKWTLDKQQLGNQ 299
Query: 851 SCVFHPTYPSLLVIGCY-QSLELWNM 875
T ++ +L + +
Sbjct: 300 QVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 3e-04
Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 16/179 (8%)
Query: 719 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKGGTAQ----MRFQPHL 772
L + P + + C +R + F G + ++F P
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 773 -GRYLAAAAEN-VVSILDAETQACRLSL--------QGHTKPIDSVCWDPSGELLASVSE 822
+YL + E+ V + S+ Q PI + WD G L V E
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 823 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 881
S G + E+S + + ++C + P + ++
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 194
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 74.0 bits (180), Expect = 1e-14
Identities = 20/316 (6%), Positives = 74/316 (23%), Gaps = 45/316 (14%)
Query: 643 FSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKT 700
+ + + + + + K+ + +P ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 701 VRVWDADNPGYSLRTFMG-----HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 755
+ D D + + S+ S P+ ++ + + + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 756 TRVFKGGTAQMRFQPHLGRY-------------LAAAAENVVSILDAETQACRLSLQGHT 802
VF A + +D +T ++L
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 803 KP------------------------IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGEC 838
+ ++ + + ++ +V +
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243
Query: 839 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 898
E + + + + P P+ + L +++ + K + + +A +
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKK 302
Query: 899 TGYVASASHDKFVKLW 914
+ + ++
Sbjct: 303 GDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.4 bits (111), Expect = 5e-06
Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 2/73 (2%)
Query: 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 694
T S G ++ A + K V F +L
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308
Query: 695 SSFDKTVRVWDAD 707
+ V++ D
Sbjct: 309 GGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 5/130 (3%)
Query: 638 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSS 696
F D + AT + T K+ T + L SP P
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV 270
Query: 697 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 756
+ + +D ++ + + F D + ++ ++ +
Sbjct: 271 LN-RLAKYDLKQ-RKLIKAA-NLDHTYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKV 326
Query: 757 RVFKGGTAQM 766
+ K M
Sbjct: 327 KNIKLPGGDM 336
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.5 bits (181), Expect = 1e-14
Identities = 35/316 (11%), Positives = 81/316 (25%), Gaps = 71/316 (22%)
Query: 667 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-----------PGYSLRT 715
+ + + H + I V + S D ++VWD + ++
Sbjct: 4 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 716 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM--------- 766
+ H + +++ + L+ + G++ ++ I T+ +
Sbjct: 62 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121
Query: 767 --------RFQPHLGRYLAAAAEN-------------------VVSILDAETQACRLSLQ 799
L L A + E Q S
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181
Query: 800 GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 859
++ SV G L+A+ + + S E + + + +
Sbjct: 182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240
Query: 860 SLLVIGCYQS---------------------LELWNMSENKTMTLTAHEGLIAALAVSTE 898
+ L + S ++ AH + +L+ +
Sbjct: 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300
Query: 899 TGYVASASHDKFVKLW 914
+ SA D ++ W
Sbjct: 301 GETLCSAGWDGKLRFW 316
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.3 bits (152), Expect = 5e-11
Identities = 41/231 (17%), Positives = 71/231 (30%), Gaps = 44/231 (19%)
Query: 626 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVL------WHTDTLKSKTNLEEHSSL 679
S + S G L+ATG ++ + +S+ ++ +S+
Sbjct: 175 GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 680 ITDVRFSPSMPRLATSSFDKTVRVW---------------DADNPGYSLRTFMGHSASVM 724
I V+FSP LA + + + + HS+ VM
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 725 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL------GRYLAA 778
SL F+ + + L + DG++R+W + + + + G LA
Sbjct: 294 SLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 352
Query: 779 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 828
V L K S E L V D S+R +
Sbjct: 353 PGVFDVKFLK--------------KGWRSGMGADLNESLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.9 bits (143), Expect = 6e-10
Identities = 27/200 (13%), Positives = 49/200 (24%), Gaps = 28/200 (14%)
Query: 662 WHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA 721
+ + + S T V S +AT + TV++ + HS
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227
Query: 722 SVMSLD----FHPNKDDLICSCDGDGEIRYWSINNGSCTR-------------------V 758
S + L+ ++
Sbjct: 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 287
Query: 759 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI----DSVCWDPSG 814
+ F +A + + D +T+ +L H I D + D G
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347
Query: 815 ELLASVSEDSVRVWTVGSGS 834
+ LA V+ G S
Sbjct: 348 DSLAEPGVFDVKFLKKGWRS 367
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 1e-06
Identities = 22/174 (12%), Positives = 49/174 (28%), Gaps = 16/174 (9%)
Query: 586 DRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 645
L+ G + V+ + S + SV+ S +
Sbjct: 195 RGLIATGFNNGTVQISELSTLRPLYN---FESQHSMINNSNSIRSVKFSPQGSLLAIAHD 251
Query: 646 DGKLLATGGHDKKAVLW------HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 699
++ + T + ++ HSS + + F+ S L ++ +D
Sbjct: 252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311
Query: 700 TVRVWDADNPGYSLRTFMGHSASV----MSLDFHPNKDDLICSCDGDGEIRYWS 749
+R WD + T H + L + G ++++
Sbjct: 312 KLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDE--HGDSLAEPGVFDVKFLK 362
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 604 HDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 663
+ G S + + A +S V+ F+ G+ L + G D K W
Sbjct: 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317
Query: 664 TDTLKSKTNLEEHSS----LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH 719
T + T L H + LA V+D R+ MG
Sbjct: 318 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVKFLKKGWRSGMGA 371
Query: 720 SASVMSLDFHPNKDDLICSCDGDGEIRYW 748
+ ++ +C D IR++
Sbjct: 372 -----------DLNESLCCVCLDRSIRWF 389
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 69.5 bits (168), Expect = 4e-13
Identities = 21/227 (9%), Positives = 46/227 (20%), Gaps = 21/227 (9%)
Query: 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 688
S + + G + ++ + K E+S F
Sbjct: 131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH-DYAPAFDAD 189
Query: 689 MPRLATSSFDKTVRVWDADN------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 742
L S+ D S P
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249
Query: 743 GEIRYWSI------NNGSCTRVFKGGTAQMRFQPH--LGRYLAAAAEN-VVSILDAETQA 793
++ S + + H Y A E V+ D +T+
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR- 308
Query: 794 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 839
+ + + + + +D + + + + V
Sbjct: 309 ---KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 68.4 bits (165), Expect = 9e-13
Identities = 26/305 (8%), Positives = 62/305 (20%), Gaps = 26/305 (8%)
Query: 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 692
++ D K+ G + L D K E + +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 693 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP---------NKDDLICSCDGDG 743
A + D+ + G A +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 744 EIRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAE-NVVSILDAETQACR------ 795
I + + + + L + ++ D
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219
Query: 796 -LSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG-----SGSEGECVHELSCNGNKF 849
+ + P + D ++ + + L + +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 850 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 909
V L +++ KT +T + + L +S + V D
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDV---KTRKVTEVKNNLTDLRLSADRKTVMVRKDDG 336
Query: 910 FVKLW 914
+ +
Sbjct: 337 KIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 66.4 bits (160), Expect = 5e-12
Identities = 26/298 (8%), Positives = 57/298 (19%), Gaps = 30/298 (10%)
Query: 643 FS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 701
FS DG L+A + + D + I VR +
Sbjct: 10 FSPLDGDLIAFVSRGQ---AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 761
+ D F + +V ++ N + + D +
Sbjct: 67 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126
Query: 762 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----------CRLSLQGHTKPIDSVCW 810
F A + + + +
Sbjct: 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF 186
Query: 811 DPSGELLASVSED-SVRVWTVGSGS----EGECVHELSCNGNKFHSCVFHPTYPSLLVIG 865
D + L +S + + + P G
Sbjct: 187 DADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR-SMTSEAG 245
Query: 866 CYQSLELWNM---------SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914
Y +++ + L + + + Y A + +
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 59.9 bits (143), Expect = 6e-10
Identities = 16/166 (9%), Positives = 36/166 (21%), Gaps = 17/166 (10%)
Query: 601 FLSHDDTDP-RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKA 659
+LS+ DP D + + G +D
Sbjct: 195 YLSYRSLDPSPDRVVLNFSFEVV---SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 660 VLWHT-------DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 712
+ + + LE + + + + +D
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---- 307
Query: 713 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV 758
R ++ L + + DG+I + + R
Sbjct: 308 -RKVTEVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPEDERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 58.3 bits (139), Expect = 2e-09
Identities = 16/181 (8%), Positives = 41/181 (22%), Gaps = 15/181 (8%)
Query: 638 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-------LEEHSSLITDVRFSPSMP 690
F +D K L + L + + P
Sbjct: 181 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240
Query: 691 RLATSSFDKT---VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDGEI 745
+D R + R + +S++ + + G +
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300
Query: 746 RYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHTKP 804
+ + T K +R + + + + E +++ +P
Sbjct: 301 LKYDVKTRKVT-EVKNNLTDLRLSAD-RKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP 358
Query: 805 I 805
+
Sbjct: 359 L 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 22/250 (8%), Positives = 56/250 (22%), Gaps = 21/250 (8%)
Query: 683 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 742
FSP L + D + + + + + +
Sbjct: 8 EDFSPLDGDLIAFVSRGQAFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 743 GE-IRYWSINNGSCTRVFKGGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 799
G+ + + G + + M + + A + +D ET + +
Sbjct: 65 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 800 GHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNGNKFHSC 852
I + +A V EG + + + ++
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184
Query: 853 VFHPTYPSLLVIGCYQSLELWN--------MSENKTMTLTAHEGLIAALAVSTETGYVAS 904
F +L + + +K + G + + +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 905 ASHDKFVKLW 914
+D
Sbjct: 245 GEYDLNDMYK 254
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 66.0 bits (159), Expect = 4e-12
Identities = 28/305 (9%), Positives = 66/305 (21%), Gaps = 38/305 (12%)
Query: 648 KLLATGGHDKKAVLW--HTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVW 704
+ K V+ + + + +P AT + +++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 705 DADNP----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 760
D L T S+ P+ L + ++
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 761 GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKP----- 804
T R R + A + ++D E +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 805 -IDSVCWDPSGELLASVSEDSVRVWTVG----SGSEGECVHELSCNGNKFHSCVFHPTYP 859
D + E ++ + + + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241
Query: 860 ----------SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 909
G Y LE +++ +N ++ ++ VST+ V
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301
Query: 910 FVKLW 914
+ +
Sbjct: 302 DLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.0 bits (120), Expect = 3e-07
Identities = 19/232 (8%), Positives = 49/232 (21%), Gaps = 28/232 (12%)
Query: 603 SHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW 662
+ ++ ++ DG L G D +
Sbjct: 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161
Query: 663 HTDTLKSK---------------------TNLEEHSSLITDVRFSPSMPRLATSSFDKTV 701
TL + + +++ +
Sbjct: 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221
Query: 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 761
D + ++R S +P K + + + + + +
Sbjct: 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPL 278
Query: 762 GTA--QMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHTKPIDSVCW 810
+ + G + A ++ DAET + + S+
Sbjct: 279 PHSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.4 bits (157), Expect = 5e-12
Identities = 29/288 (10%), Positives = 69/288 (23%), Gaps = 56/288 (19%)
Query: 673 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 732
+ H+ IT + +P L + S+D + W + + HS ++SLD +
Sbjct: 9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKAQ 58
Query: 733 ----------------------------------DDLICSCDGDGEIRYWSINNGSCTRV 758
+ + D D I + +
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118
Query: 759 FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 818
+ + + + ++ + + PS +A
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178
Query: 819 SVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------S 869
+ + E + + +
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238
Query: 870 LELWNMSENKT--MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915
+ ++++ L AH+ + L T + S+ D +K W
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.8 bits (153), Expect = 2e-11
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 685 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 744
+AT S D + ++ P ++ H V +L + + S D
Sbjct: 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADAC 280
Query: 745 IRYWSI 750
I+ W++
Sbjct: 281 IKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 9/128 (7%), Positives = 33/128 (25%), Gaps = 1/128 (0%)
Query: 704 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 763
+ + + S + + + +
Sbjct: 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 218
Query: 764 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSE 822
+ + + + I + + L H ++++ W+ L++S ++
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 278
Query: 823 DSVRVWTV 830
++ W V
Sbjct: 279 ACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.8 bits (101), Expect = 5e-05
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 713 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 755
L+T GH+ + +L +P + S DG I WS ++
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 8e-05
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 797 SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG--ECVHELSCNGNKFHSCV 853
++ GH K I ++ +P L S S D + W+ S + + L + + +S +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI 63
Query: 854 FHPTYPSLLVIGCYQSLELWNM 875
+ I ++ +
Sbjct: 64 SWDDTLKVNGITKHEFGSQPKV 85
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 62.5 bits (151), Expect = 1e-10
Identities = 30/298 (10%), Positives = 69/298 (23%), Gaps = 29/298 (9%)
Query: 643 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 700
D + T + L T + KT L+ + + R S S L D
Sbjct: 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGK 84
Query: 701 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 756
V + D ++ + S I +
Sbjct: 85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144
Query: 757 RVFKGGTAQMRFQP-------------HLGRYLAAAAE--NVVSILDAETQACRLSLQGH 801
++ Q H + + ++D + +
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 204
Query: 802 T-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 860
+ + D S + + ++ + + EG+ V G H +
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVVIDT-KEGKLVAIEDTGGQTPHPG-RGANFVH 262
Query: 861 LLVIGCYQSLELWN----MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 914
+ + + + + + I + G + +H L+
Sbjct: 263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 58.3 bits (139), Expect = 2e-09
Identities = 28/290 (9%), Positives = 71/290 (24%), Gaps = 33/290 (11%)
Query: 643 FSSDGKLLAT----------GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 692
+ DG +A G ++ TL ++E + V P M
Sbjct: 54 VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWM--T 111
Query: 693 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH------PNKDDLICSCDGDGEIR 746
+ + KT+ + + A LD P D DG +
Sbjct: 112 SLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLA 171
Query: 747 YWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPID 806
+ + + + + + +
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH------------ 219
Query: 807 SVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 866
SG+ + +++ G +++ + +
Sbjct: 220 -QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278
Query: 867 YQSLELWNMSENKTMTLTAHEGLIAALAVST--ETGYVASASHDKFVKLW 914
+ + + + + + I ++ VS + A ++ DK + +
Sbjct: 279 SRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIH 328
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.3 bits (126), Expect = 7e-08
Identities = 22/211 (10%), Positives = 43/211 (20%), Gaps = 7/211 (3%)
Query: 526 SAPSTPSTHTPGDVISMPALPHSGTTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADM 585
P GT + + +
Sbjct: 146 DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 205
Query: 586 DRLVEDGSLDDNVESFLSHDDTD---PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCH 642
+ + + P + + G+ V +
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 643 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL--ATSSFDKT 700
+ V+ T + E I + S L A S+ DKT
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKT 324
Query: 701 VRVWDADNPGYSLRTFMGHSASVMSLDFHPN 731
+ + DA++ G LR+ +
Sbjct: 325 LYIHDAES-GEELRSVNQLGHGPQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 25/210 (11%), Positives = 48/210 (22%), Gaps = 28/210 (13%)
Query: 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 688
T+ DG L + ++ E LI +S
Sbjct: 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI----THTEVFHPEDEFLINHPAYSQK 205
Query: 689 MPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPN---------------- 731
RL ++ + D + L + + + + P
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 732 ---KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA--QMRFQPHLGRYLAAAA--ENVV 784
+ D + G F+ G + L A + + +
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL 325
Query: 785 SILDAETQACRLSLQGHTKPIDSVCWDPSG 814
I DAE+ S+ + G
Sbjct: 326 YIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (130), Expect = 2e-08
Identities = 16/108 (14%), Positives = 43/108 (39%)
Query: 64 IARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQ 123
I +T++ +E ++ Q + + Q++ +Q Q+ Q+ +Q ++
Sbjct: 192 ILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 251
Query: 124 QLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQR 171
+ LL+ + Q+ +Q ++ Q + + + Q Q +
Sbjct: 252 MENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (130), Expect = 2e-08
Identities = 13/104 (12%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 70 KHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQ 129
++ + E ++ R + + Q + + Q++++Q +Q+++ Q+ Q+ +
Sbjct: 193 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ--MMEQKERSYQEHLKQLTE 250
Query: 130 ILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
+ Q ++ ++ + Q+Q+Q ++ Q++ + +
Sbjct: 251 KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ 294
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (130), Expect = 2e-08
Identities = 12/88 (13%), Positives = 39/88 (44%)
Query: 85 KAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQ 144
+ + + Q + + Q++ + ++ Q+ +Q +M+ +Q +Q++
Sbjct: 210 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 269
Query: 145 QHQQQQQQQQQPPQQPQQQQPQQQQQRR 172
+ Q+Q+Q ++ Q+ + + Q +
Sbjct: 270 KLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (124), Expect = 1e-07
Identities = 13/118 (11%), Positives = 46/118 (38%)
Query: 56 WSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQ 115
+ + T+ + + I+ + + Q + + Q+ + +Q+
Sbjct: 178 LQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK 237
Query: 116 QQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRD 173
++ Q+ + +++ R ++Q + + Q+Q+Q + Q++ + + +D
Sbjct: 238 ERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 295
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (118), Expect = 7e-07
Identities = 14/102 (13%), Positives = 45/102 (44%)
Query: 54 EWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQ 113
+ + I K AS ++ + +Q +Q+++ Q+ +Q +++ +
Sbjct: 196 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 255
Query: 114 QQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQHQQQQQQQQQ 155
+ Q ++Q++ L ++ ++ ++ Q + + + + Q Q
Sbjct: 256 RVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQ 297
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.1 bits (126), Expect = 8e-08
Identities = 25/319 (7%), Positives = 71/319 (22%), Gaps = 50/319 (15%)
Query: 643 FSSDGK---LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---------- 689
+ + + W + T + ++ S
Sbjct: 27 PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSF 86
Query: 690 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM-------SLDFHPNKDDLICSCDGD 742
R A V V+D + A + + L+ G
Sbjct: 87 ARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145
Query: 743 GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS----- 797
S+ S ++ K + + + ++ D
Sbjct: 146 SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205
Query: 798 -LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 856
+ + G L+ +V+ + + + + N + + F
Sbjct: 206 CTGAQNCSSQAAQANYPGMLVWAVASS-ILQGDIPAAG-ATMKAAIDGNESGRKADNFRS 263
Query: 857 TYPSLLVIGCYQSLELWNMSENKTMTLTA-------------------HEGLIAALAVST 897
++ + E+ L A + A+ +
Sbjct: 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ 323
Query: 898 --ETGYVASASHDKFVKLW 914
+ A+++ + + ++
Sbjct: 324 DGASDNYANSAGTEVLDIY 342
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.4 bits (88), Expect = 0.003
Identities = 11/214 (5%), Positives = 44/214 (20%), Gaps = 20/214 (9%)
Query: 531 PSTHTPGDVISMPALPHSGTTSKP-LMMFGTDGAG---TLTSPSNQLWDDKDLELRADMD 586
+ + + H + + + L + A
Sbjct: 153 VPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212
Query: 587 RLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE--ANSVRASTSKVICCHFS 644
+ + + D G + E + ++
Sbjct: 213 SSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272
Query: 645 SDGKLLATGGHDKKAV---------LWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL--A 693
+ + + ++ + + + + A
Sbjct: 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYA 331
Query: 694 TSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSL 726
S+ + + ++DA + + + +S+
Sbjct: 332 NSAGTEVLDIYDAAS-DQDQSSVELDKGPESLSV 364
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 694 TSSFDKTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 752
S + + VW+ ++ G +L + V + P+K L + + + I
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 753 GSCTRVF 759
F
Sbjct: 69 DDGALTF 75
|
| >d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]
Score = 47.9 bits (114), Expect = 2e-06
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 28/122 (22%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ-----------------QQQQLQMQQ 129
E ++ QQQ ++ + QQ Q HQ+ + + + +
Sbjct: 80 PETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAIS 139
Query: 130 ILLQRHAQQQQQ-----------HQQQHQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLL 178
+L + Q +H + QQQQQ ++Q Q QQQ +G +L
Sbjct: 140 LLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVL 199
Query: 179 NG 180
+G
Sbjct: 200 SG 201
|
| >d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]
Score = 37.5 bits (87), Expect = 0.004
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 62 IFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQ 120
I + T+ ++++ + L + + + QQQQQQ+ +Q HQQQ+++
Sbjct: 138 ISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGG 196
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 47.3 bits (111), Expect = 5e-06
Identities = 31/314 (9%), Positives = 67/314 (21%), Gaps = 44/314 (14%)
Query: 643 FSSDGK--LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 700
D T + L D+ K ++ + + R S S L D
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDAR 84
Query: 701 VRVWDADNPG----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 756
+ + D ++ + + S I +
Sbjct: 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144
Query: 757 RVFKGGTAQ---MRFQPHLGRYLAAAAEN-------------VVSILDAETQACRLSLQG 800
++ + P A+ V+ + + ++ G
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 204
Query: 801 HTKPIDSVCWDPSGELLASV-------------SEDSVRVWTVGSGSEGECVHELSCNGN 847
+ WD S + + VG
Sbjct: 205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY 264
Query: 848 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA---- 903
H S+ +IG + K L G + ++ ++
Sbjct: 265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWK-KVAELQGQGGGSLFIKTHPKSSHLYVDTT 323
Query: 904 ---SASHDKFVKLW 914
A + V ++
Sbjct: 324 FNPDARISQSVAVF 337
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.0 bits (87), Expect = 0.004
Identities = 21/153 (13%), Positives = 39/153 (25%), Gaps = 22/153 (14%)
Query: 628 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 687
AN V V DG + G K + K L+ ++ P
Sbjct: 257 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AWKKVAELQGQGGGSLFIKTHP 313
Query: 688 -------SMPRLATSSFDKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNK 732
+ ++V V+D N P + V+ +++
Sbjct: 314 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 373
Query: 733 DDLICSC----DGDGEIRYWSINNGSCTRVFKG 761
D++ S + + V K
Sbjct: 374 DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 406
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 28/267 (10%), Positives = 70/267 (26%), Gaps = 6/267 (2%)
Query: 652 TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPG 710
+ + K + S+ SP ++ ++ V + D
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTAT-N 64
Query: 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQP 770
+ T S+ K + + + +N V G +
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124
Query: 771 HLGRYL--AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVW 828
G+ L + VS+++ T+A ++ P ++ + +
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184
Query: 829 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG 888
+ ++ + V + ++ + + NK
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244
Query: 889 LIAALAVSTETGYV-ASASHDKFVKLW 914
A +AV+ + V + S V +
Sbjct: 245 DPAGIAVTPDGKKVYVALSFCNTVSVI 271
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 14/109 (12%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Query: 775 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS--VRVWTVGS 832
Y+A + + +S++D + ++ + P+ P G + + S V + +
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 833 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 881
+ V S S Y + + ++ + + T+
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112
|
| >d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 239 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Seed storage 7S protein species: Soybean (Glycine max), proglycinin [TaxId: 3847]
Score = 39.9 bits (93), Expect = 6e-04
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 27/115 (23%)
Query: 93 QQQQQQQQQQQQQQSQQPPHQQQQQQQ-------------------QQQQQLQMQQILLQ 133
++ QQ QQ+ QS +P + Q+ + + I+
Sbjct: 81 STFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDT 140
Query: 134 RHAQQQQQHQQQ--------HQQQQQQQQQPPQQPQQQQPQQQQQRRDGAHLLNG 180
+ Q + Q+ + QQ+ Q+ QQ++ +G +L+G
Sbjct: 141 NSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSG 195
|
| >d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 125 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin family: Seed storage protein, 2S albumin domain: 2S albumin RicC3 species: Castor bean (Ricinus communis) [TaxId: 3988]
Score = 36.8 bits (85), Expect = 0.002
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 87 REQQQQQQQQQQQQQQQQQQSQQPPHQQQQQQQQQQQQLQMQQILLQRHAQQQQQHQQQH 146
RE QQ +Q+ Q++ ++ Q ++ ++ L+M Q+ QQ Q
Sbjct: 10 REGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQ 69
Query: 147 QQQQQQQQQPP-------QQPQQQQPQQQQQRR 172
+Q + + Q Q QQ Q ++ R
Sbjct: 70 VKQVRDECQCEAIKYIAEDQIQQGQLHGEESER 102
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 915 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.92 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.91 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.91 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.85 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.82 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.8 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.79 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.77 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.77 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.67 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.55 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.47 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.46 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.31 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.26 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.26 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.26 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.22 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.18 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.05 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.03 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.02 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.97 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.92 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.88 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.77 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.75 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.74 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.71 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.56 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.53 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.52 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.07 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.76 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.71 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.69 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.69 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.33 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.22 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.04 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.65 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.51 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.49 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.27 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.24 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.19 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.35 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.22 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.98 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.57 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.34 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.08 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.64 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 89.15 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 88.57 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 85.93 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 85.27 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 83.68 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 83.02 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-33 Score=283.43 Aligned_cols=284 Identities=19% Similarity=0.283 Sum_probs=249.0
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-----EEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 3024457415999859999938999999997899199997899823-----46732479867899998999989998389
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-----KTNLEEHSSLITDVRFSPSMPRLATSSFD 698 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~-----~~~l~~h~~~V~~i~fspdg~~Lasgs~D 698 (915)
..+.+..+ .|...|+|++|+++|++||+|+ ||.|+|||+.+... .....+|...|.+++|+|++++|++++.|
T Consensus 41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d 118 (337)
T d1gxra_ 41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118 (337)
T ss_dssp EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred CCEEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 75499987-9999289999989999999997-998899773677633116876404889968999986799889886123
Q ss_pred CEEEEEECCCCC-CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCE
Q ss_conf 809999778999-547884257887589997489991999981898199999479905788626---8107999139998
Q 002495 699 KTVRVWDADNPG-YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR 774 (915)
Q Consensus 699 g~I~iwdl~~~~-~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ 774 (915)
+.|++||+.... .....+..|...|.+++|++++. ++++++.|+.|++|+++++++...... .+.++.|++++..
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 197 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 321111111111111111111111111111111111-1111111111111111111111111111111110123444321
Q ss_pred EEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEE
Q ss_conf 9999849929999889960899951799984799992999999999499-099998788998613888314998539999
Q 002495 775 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853 (915)
Q Consensus 775 ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 853 (915)
+++++.|+.|++||+++++.+..+. +...|.+++|+|+++++++++.+ .+++||++.+. . .....|...+.++.
T Consensus 198 ~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~---~-~~~~~~~~~i~~v~ 272 (337)
T d1gxra_ 198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---K-YQLHLHESCVLSLK 272 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---E-EEECCCSSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCC---C-CCCCCCCCCCCEEE
T ss_conf 1223566553211111100000246-66615799971530300000025642111111111---0-00012456541699
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 91799989999869809999889992899815689869999937999999996698299909
Q 002495 854 FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 854 ~spdg~~lisgs~dg~I~iwd~~~~~~~~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
|+|++.+|++++.|+.|++||+.+++.+....|.+.|++++|+|++++|++|+.||.|+|||
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 98999999999489969999899997999926999879999927999999990899699997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.1e-33 Score=283.61 Aligned_cols=285 Identities=26% Similarity=0.487 Sum_probs=262.8
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 24457415999859999938999999997899199997899823467324798678999989999899983898099997
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwd 705 (915)
.++.+|++|.+.|+||+|+|++++||+|+.||+|+|||+.+++.+.++.+|...|.+++|++++.++++++.++.+.+|+
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred CCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 84489858888768999938989999993899299998999979999957888677776301111011111111101110
Q ss_pred CCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEECCC
Q ss_conf 78999547884257887589997489991999981898199999479905788626---810799913999899998499
Q 002495 706 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 782 (915)
Q Consensus 706 l~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~dg 782 (915)
... ......+.+|...+.++.|++++.. +++++.|+.+++||++++.....+.. .+.++.+++++..+++++.|+
T Consensus 88 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 165 (317)
T d1vyhc1 88 FQG-FECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165 (317)
T ss_dssp TTS-SCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCC-CCCCCCCCCCCCCCEEEECCCCCCE-EEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEEEECCC
T ss_conf 011-1111110000000000001699855-77652675235751144303468716777630000166799999992798
Q ss_pred EEEEEECCCCEEEEEECCCCCCEEEEEECCCC--------------------CEEEEEECC-EEEEEECCCCCCCCEEEE
Q ss_conf 29999889960899951799984799992999--------------------999999499-099998788998613888
Q 002495 783 VVSILDAETQACRLSLQGHTKPIDSVCWDPSG--------------------ELLASVSED-SVRVWTVGSGSEGECVHE 841 (915)
Q Consensus 783 ~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg--------------------~~las~s~d-~I~iwdl~s~~~~~~i~~ 841 (915)
.|++|+..+......+..|...+.++.|+++. .++++++.| .|++|+++++ .++..
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~ 242 (317)
T d1vyhc1 166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMT 242 (317)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEE
T ss_pred EEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCC---CEEEE
T ss_conf 299975125403478824778733799863256411103456303430258861475169978999888999---68899
Q ss_pred ECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 3149985399999179998999986980999988999289-9815689869999937999999996698299909
Q 002495 842 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 842 ~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~-~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
+..|...+.++.|+|++.+|++++.|+.|++||+.+++++ .+.+|.+.|++++|++++.+|++|+.||.|+|||
T Consensus 243 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 968899879999879999999997989499999999919999928999889999949999999992899499829
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.2e-32 Score=275.25 Aligned_cols=288 Identities=21% Similarity=0.420 Sum_probs=253.2
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 53024457415999859999938999999997899199997899823467324798678999989999899983898099
Q 002495 623 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 702 (915)
Q Consensus 623 ~~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~ 702 (915)
..++..++|++|.+.|+|++|+|++.+||+|+.||+|+|||+.+++.+..+..|...|++++|+|++.++++++.|+.|+
T Consensus 43 ~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~ 122 (340)
T d1tbga_ 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred CCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEE
T ss_conf 43065279888789888999989999999997899555631021025799724653377567601211443101332010
Q ss_pred EEECCCCC---CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEE
Q ss_conf 99778999---547884257887589997489991999981898199999479905788626---810799913999899
Q 002495 703 VWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 776 (915)
Q Consensus 703 iwdl~~~~---~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll 776 (915)
+|+..... .....+.+|...+....+... . .++....|.....|............. .+....+.+....++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (340)
T d1tbga_ 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EEESSSSCSCCCEEEEECCCSSCEEEEEEEET-T-EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEE
T ss_conf 13322221222111001354211011111111-1-111112445432001232211111233101576300124421268
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEE--ECCCCCCEEEEE
Q ss_conf 99849929999889960899951799984799992999999999499-099998788998613888--314998539999
Q 002495 777 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE--LSCNGNKFHSCV 853 (915)
Q Consensus 777 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~--~~~~~~~i~~i~ 853 (915)
++..|+.|++||+++++++.++.+|...|++++|+|++.+|++++.| .|++|+++.. ..+.. ...+...+.++.
T Consensus 201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEE
T ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCC---CCCCCCCCCCCCCCEEEEE
T ss_conf 7605736999999999488999578898589999799899999969996999752122---1111111224457458999
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 9179998999986980999988999289-9815689869999937999999996698299909
Q 002495 854 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 854 ~spdg~~lisgs~dg~I~iwd~~~~~~~-~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
|++++.+|++++.|+.|++||+.+++.+ .+.+|.+.|++++|+|++.+|++|+.||.|+|||
T Consensus 278 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 989999999997979899999999939899848999789999908999999990699799859
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-32 Score=281.09 Aligned_cols=283 Identities=26% Similarity=0.429 Sum_probs=243.6
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC------------------CCCCCEEEEEECCCCCE
Q ss_conf 741599985999993899999999789919999789982346732------------------47986789999899998
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------------------EHSSLITDVRFSPSMPR 691 (915)
Q Consensus 630 ~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~------------------~h~~~V~~i~fspdg~~ 691 (915)
...+|.+.|+||+|++||++||+|+ |++|+|||+.+++.+..+. .|...|++++|++++++
T Consensus 57 ~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 6079999689999999999999994-994899981364057663166544324432111014677898899998899980
Q ss_pred EEEEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC--CEEEEEE
Q ss_conf 99983898099997789995478842578875899974899919999818981999994799057886268--1079991
Q 002495 692 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG--TAQMRFQ 769 (915)
Q Consensus 692 Lasgs~Dg~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~--~~~i~~s 769 (915)
|++|+.||.|++|+... +..+..+.+|...|.++.|++++.. +++++.++.|++||.++.......... ...+.+.
T Consensus 136 l~s~~~dg~v~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 213 (388)
T d1erja_ 136 LATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213 (388)
T ss_dssp EEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred CEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 12134441111211111-1111111111111111011111111-112221015654101111110000124544211236
Q ss_pred C-CCCEEEEEECCCEEEEEECCCCEEEEEE-------CCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCC-----
Q ss_conf 3-9998999984992999988996089995-------1799984799992999999999499-099998788998-----
Q 002495 770 P-HLGRYLAAAAENVVSILDAETQACRLSL-------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE----- 835 (915)
Q Consensus 770 p-~~~~ll~~~~dg~I~i~D~~t~~~~~~l-------~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~----- 835 (915)
+ ++..+++++.|+.|++||.+++.....+ .+|...|.+++|+|++.+|++++.| .|++||++....
T Consensus 214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 293 (388)
T d1erja_ 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293 (388)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCC
T ss_conf 88787589973898199963455730001024433345778987899997999999999789928987515776432101
Q ss_pred ----CCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEE------ECCCCEEEE
Q ss_conf ----6138883149985399999179998999986980999988999289-98156898699999------379999999
Q 002495 836 ----GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAV------STETGYVAS 904 (915)
Q Consensus 836 ----~~~i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~-~~~~h~~~V~~ia~------spdg~~Las 904 (915)
..+......|...+.+++|+|++.+|++++.|+.|++||+.+++++ .+.+|.+.|.++++ +|++.+|++
T Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s 373 (388)
T d1erja_ 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373 (388)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred CCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEE
T ss_conf 34442001101245532789998899999999969897999999999699999688997899998467425899999999
Q ss_pred EECCCCEEECC
Q ss_conf 96698299909
Q 002495 905 ASHDKFVKLWK 915 (915)
Q Consensus 905 gs~Dg~I~IWd 915 (915)
|+.||.|+|||
T Consensus 374 ~s~Dg~I~iW~ 384 (388)
T d1erja_ 374 GSGDCKARIWK 384 (388)
T ss_dssp EETTSEEEEEE
T ss_pred EECCCEEEEEE
T ss_conf 91899799976
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.8e-30 Score=262.59 Aligned_cols=281 Identities=16% Similarity=0.249 Sum_probs=223.8
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCE
Q ss_conf 59998599999389999999978991999978998234673247986789999899998999838980999977899954
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 712 (915)
Q Consensus 633 ~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~~~ 712 (915)
.+.+.+.+++++|+|+.|+.+. ++.|.+|++++......+.+|...|++++|+|++++|++|+.||+|+|||+.+....
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCC
T ss_conf 7788759999969989999996-999999999999661797478888899999489996722556736746631011110
Q ss_pred -EEEECCCCCCEEEEEECCCCCEEEEEEEC--CCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCE-EEEEECCCEEE
Q ss_conf -78842578875899974899919999818--98199999479905788626---8107999139998-99998499299
Q 002495 713 -LRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YLAAAAENVVS 785 (915)
Q Consensus 713 -~~~~~~h~~~V~si~fsp~~~~ll~sgs~--Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~-ll~~~~dg~I~ 785 (915)
...+.+|...|.+++|++++..++ +++. +..+++|++++++....+.+ .+.++.|+|++.. +++++.|+.|+
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~-~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~ 172 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIA-AVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEE-EEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 0001343357543323331110001-111221111111111111111111111111111111211101200011221111
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEE----EECCCCCCEEEEEEECCCCE
Q ss_conf 99889960899951799984799992999999999499-09999878899861388----83149985399999179998
Q 002495 786 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH----ELSCNGNKFHSCVFHPTYPS 860 (915)
Q Consensus 786 i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~----~~~~~~~~i~~i~~spdg~~ 860 (915)
+||.++.++...+..|...|+++.|+|+++++++++.| .|++||+.++.....+. ...+|...|.+++|+|++.+
T Consensus 173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~ 252 (311)
T d1nr0a1 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252 (311)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 11111111111111111111112347642212111111111000124464112221111111002465321024788999
Q ss_pred EEEEECCCEEEEEECCCCCEE-EECCCCC-CEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 999986980999988999289-9815689-869999937999999996698299909
Q 002495 861 LLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 861 lisgs~dg~I~iwd~~~~~~~-~~~~h~~-~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
|++++.|+.|+|||+.+++++ .+..|.. ....+.+.+++.+|++++.||.|++||
T Consensus 253 l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd 309 (311)
T d1nr0a1 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309 (311)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEE
T ss_conf 999937996999999999699999799986332999995199999998999799995
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-29 Score=252.76 Aligned_cols=275 Identities=15% Similarity=0.250 Sum_probs=235.2
Q ss_pred CCEEEEECCCCCEECC--CCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 7508997089811027--99806847771166521000026887775344102689998788886432356753024457
Q 002495 553 KPLMMFGTDGAGTLTS--PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 630 (915)
Q Consensus 553 ~~~~~fs~dg~~~~~~--~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 630 (915)
-..+.|+++|.+++++ +.++|||+....... ......
T Consensus 54 V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~-----------------------------------------~~~~~~ 92 (337)
T d1gxra_ 54 VCAVTISNPTRHVYTGGKGCVKVWDISHPGNKS-----------------------------------------PVSQLD 92 (337)
T ss_dssp CCEEEECSSSSEEEEECBSEEEEEETTSTTCCS-----------------------------------------CSEEEE
T ss_pred EEEEEECCCCCEEEEEECCEEEEEECCCCCCCC-----------------------------------------EEEEEE
T ss_conf 899999899999999979988997736776331-----------------------------------------168764
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC--CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 41599985999993899999999789919999789--9823467324798678999989999899983898099997789
Q 002495 631 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 631 l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~--~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~ 708 (915)
..+|.+.|++++|+|++++|++++.|+.|++||+. +.+....+..|...|.++.|++++.++++++.|+.|++|++.+
T Consensus 93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~ 172 (337)
T d1gxra_ 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN 172 (337)
T ss_dssp CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 04889968999986799889886123321111111111111111111111111111111111111111111111111111
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 9954788425788758999748999199998189819999947990578862--68107999139998999984992999
Q 002495 709 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSI 786 (915)
Q Consensus 709 ~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~--~~~~~i~~sp~~~~ll~~~~dg~I~i 786 (915)
+.......+|...|.+++|++++. .+++++.|+.|++||+++++.+..+. ..+.++.|++++..+++++.++.+++
T Consensus 173 -~~~~~~~~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i 250 (337)
T d1gxra_ 173 -QTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250 (337)
T ss_dssp -TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCEECCCCCCCC
T ss_conf -111111111111111012344432-112235665532111111000002466661579997153030000002564211
Q ss_pred EECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 9889960899951799984799992999999999499-099998788998613888314998539999917999899998
Q 002495 787 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 865 (915)
Q Consensus 787 ~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs 865 (915)
||++..... ....|...|++++|+|++++|++++.| .|++||+.++ .++..+. |...|.+++|+|++++|++++
T Consensus 251 ~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~---~~~~~~~-~~~~v~~~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 251 LHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp EETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE-CSSCEEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCC-CCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEECC-CCCCEEEEEEECCCCEEEEEE
T ss_conf 111111100-00124565416999899999999948996999989999---7999926-999879999927999999990
Q ss_pred CCCEEEEEEC
Q ss_conf 6980999988
Q 002495 866 CYQSLELWNM 875 (915)
Q Consensus 866 ~dg~I~iwd~ 875 (915)
.|+.|+|||+
T Consensus 326 ~D~~I~vWdl 335 (337)
T d1gxra_ 326 GDKKATVYEV 335 (337)
T ss_dssp TTSCEEEEEE
T ss_pred CCCEEEEEEE
T ss_conf 8996999977
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.9e-30 Score=262.22 Aligned_cols=276 Identities=15% Similarity=0.222 Sum_probs=196.0
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC-C
Q ss_conf 9985999993899999999789919999789982--346732479867899998999989998389809999778999-5
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-Y 711 (915)
Q Consensus 635 ~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~-~ 711 (915)
.++|+|++|+||+++||+|+.|+.|+||++.+.+ .+..+.+|.+.|++++|+|++++|++++.|++|+|||+.+.. .
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCC
T ss_conf 98838999989999999994889899998889978999995588998889999799999999979993999862033211
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE-------ECCCEEEEEECCCCEEEEEECCCEE
Q ss_conf 478842578875899974899919999818981999994799057886-------2681079991399989999849929
Q 002495 712 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-------KGGTAQMRFQPHLGRYLAAAAENVV 784 (915)
Q Consensus 712 ~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~-------~~~~~~i~~sp~~~~ll~~~~dg~I 784 (915)
....+.+|...|.+++|+|++. .|++++.|+.|++|+++........ ...+.++.|+|++..+++++.|+.|
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v 165 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEE
T ss_conf 0012232211000111111121-100000257630254420334331110010111222111111111110001347679
Q ss_pred EEEECCC------------------CEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCC
Q ss_conf 9998899------------------60899951799984799992999999999499-0999987889986138883149
Q 002495 785 SILDAET------------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 845 (915)
Q Consensus 785 ~i~D~~t------------------~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~ 845 (915)
++||... +........|...|.+++|+|++++|++++.| .|++||+..+ ..+..+..|
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~ 242 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVATLASE 242 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEEEECS
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECC---CCEEEEECC
T ss_conf 99840157643100122111111110112440476674789875123321000014786058864101---210000014
Q ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEEE--CCCCCEE----------------------------------------EE
Q ss_conf 98539999917999899998698099998--8999289----------------------------------------98
Q 002495 846 GNKFHSCVFHPTYPSLLVIGCYQSLELWN--MSENKTM----------------------------------------TL 883 (915)
Q Consensus 846 ~~~i~~i~~spdg~~lisgs~dg~I~iwd--~~~~~~~----------------------------------------~~ 883 (915)
..++.+++|++++.+|+ ++.|+.+++|. ....... ..
T Consensus 243 ~~~v~s~~fs~d~~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (371)
T d1k8kc_ 243 TLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 321 (371)
T ss_dssp SCCEEEEEEEETTEEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCCCEEEEECCCCCEEE-EECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEEC
T ss_conf 66520365469997999-98199267877608986288720206765421246220016850652058712455661412
Q ss_pred CCCCCCEEEEEEECCC----CEEEEEECCCCEEECC
Q ss_conf 1568986999993799----9999996698299909
Q 002495 884 TAHEGLIAALAVSTET----GYVASASHDKFVKLWK 915 (915)
Q Consensus 884 ~~h~~~V~~ia~spdg----~~Lasgs~Dg~I~IWd 915 (915)
..|.+.|+++++.+.+ ..|+|++.||.|+||+
T Consensus 322 ~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred CCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEE
T ss_conf 555698899999489986567999991899399996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.5e-30 Score=256.52 Aligned_cols=247 Identities=17% Similarity=0.273 Sum_probs=212.1
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCEEEEEECCCCCEEEEEEC--CCEE
Q ss_conf 24457415999859999938999999997899199997899823--4673247986789999899998999838--9809
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSF--DKTV 701 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~--~~~l~~h~~~V~~i~fspdg~~Lasgs~--Dg~I 701 (915)
+....+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+... ...+..|...|.+++|++++.+|++++. +..+
T Consensus 49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~ 128 (311)
T d1nr0a1 49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 128 (311)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred CEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66179747888889999948999672255673674663101111000013433575433233311100011112211111
Q ss_pred EEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEE
Q ss_conf 999778999547884257887589997489991999981898199999479905788626---81079991399989999
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA 778 (915)
Q Consensus 702 ~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~ 778 (915)
+||++++ +.....+.+|...|.+++|+|++..++++|+.|+.|++||+++.++...+.. .+.++.++|++..++++
T Consensus 129 ~v~~~~~-~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~ 207 (311)
T d1nr0a1 129 HVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 207 (311)
T ss_dssp EEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1111111-111111111111111111121110120001122111111111111111111111111112347642212111
Q ss_pred ECCCEEEEEECCCCEEEEEEC-------CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCC-CE
Q ss_conf 849929999889960899951-------799984799992999999999499-099998788998613888314998-53
Q 002495 779 AAENVVSILDAETQACRLSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN-KF 849 (915)
Q Consensus 779 ~~dg~I~i~D~~t~~~~~~l~-------~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~-~i 849 (915)
+.|+.|++||.+++.....+. +|...|++++|+|++++|++++.| .|+|||++++ +++..+..+.. ..
T Consensus 208 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~~~~~l~~~~~~~~ 284 (311)
T d1nr0a1 208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTIPVGTRIED 284 (311)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC---CEEEEEECCCCCCC
T ss_conf 111111000124464112221111111002465321024788999999937996999999999---69999979998633
Q ss_pred EEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 999991799989999869809999889
Q 002495 850 HSCVFHPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 850 ~~i~~spdg~~lisgs~dg~I~iwd~~ 876 (915)
..+.+.+++..+++++.||.|++||.+
T Consensus 285 ~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 285 QQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 299999519999999899979999588
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.5e-30 Score=259.23 Aligned_cols=285 Identities=17% Similarity=0.194 Sum_probs=232.0
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 2445741599985999993899999999789919999789982346732-479867899998999989998389809999
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVW 704 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~-~h~~~V~~i~fspdg~~Lasgs~Dg~I~iw 704 (915)
+....+.+|.+.|+|++|+|++++|++|+.||+|++||+++++.+..+. .|...|++++|++++. +++++.|+.+++|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVV 81 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred CCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE-EECCCCEEEEEEE
T ss_conf 613684888878289999799999999908992999999999688998378877489988403311-2102310268873
Q ss_pred ECCCCCC--EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECCC
Q ss_conf 7789995--47884257887589997489991999981898199999479905788626810799913999899998499
Q 002495 705 DADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 782 (915)
Q Consensus 705 dl~~~~~--~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~dg 782 (915)
++..... .......+...+.+++|++++..++ + +.++.+++|+..... .........++.|++++..+++++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~-~~~~~i~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg 158 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-A-ACYKHIAIYSHGKLT-EVPISYNSSCVALSNDKQFVAVGGQDS 158 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-E-EESSEEEEEETTEEE-EEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1677620111000111134432100112211111-2-222222111111111-101111233221111111111111111
Q ss_pred EEEEEECCCCEEEE-EECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCE
Q ss_conf 29999889960899-951799984799992999999999499-0999987889986138883149985399999179998
Q 002495 783 VVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 860 (915)
Q Consensus 783 ~I~i~D~~t~~~~~-~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~ 860 (915)
.|++||+++.+... ....|...|++++|+|++.+|++++.+ .|++||+.++........+..|...+.+++|+|++.+
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 238 (299)
T d1nr0a2 159 KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238 (299)
T ss_dssp EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111111111124666451
Q ss_pred EEEEECCCEEEEEECCCCCEE---EECCC-CCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 999986980999988999289---98156-89869999937999999996698299909
Q 002495 861 LLVIGCYQSLELWNMSENKTM---TLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 861 lisgs~dg~I~iwd~~~~~~~---~~~~h-~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
|++++.|+.|++||+...... ....| ...|.++.| +++.+|++++.|+.|+|||
T Consensus 239 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp EEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred EEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-CCCCEEEEEECCCEEEEEE
T ss_conf 388828997999989999731489834898896899997-7989999992899799994
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-28 Score=246.56 Aligned_cols=292 Identities=22% Similarity=0.315 Sum_probs=237.7
Q ss_pred CCEEEEECCCCCEEC--CCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 750899708981102--799806847771166521000026887775344102689998788886432356753024457
Q 002495 553 KPLMMFGTDGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANS 630 (915)
Q Consensus 553 ~~~~~fs~dg~~~~~--~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 630 (915)
..++.|++||.++++ ++.++|||+.+++....+...... .. .........
T Consensus 65 V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~---~~-------------------------~~~~~~~~~ 116 (388)
T d1erja_ 65 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAA---NK-------------------------DPENLNTSS 116 (388)
T ss_dssp CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-------------------------------------------
T ss_pred EEEEEECCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCC---CC-------------------------CCCCCCCCC
T ss_conf 89999999999999994994899981364057663166544---32-------------------------443211101
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 41599985999993899999999789919999789982346732479867899998999989998389809999778999
Q 002495 631 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 710 (915)
Q Consensus 631 l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~ 710 (915)
...|...|++++|++++++|++|+.||.|++|+...++.+..+.+|...|.++.|++++..+++++.++.|++||..+ .
T Consensus 117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~ 195 (388)
T d1erja_ 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-G 195 (388)
T ss_dssp --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-T
T ss_pred CCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-C
T ss_conf 467789889999889998012134441111211111111111111111111101111111111222101565410111-1
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE----------CCCEEEEEECCCCEEEEEEC
Q ss_conf 54788425788758999748999199998189819999947990578862----------68107999139998999984
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------GGTAQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 711 ~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~----------~~~~~i~~sp~~~~ll~~~~ 780 (915)
....... +...+.++.+.+....+|++++.|+.|++|+.+++.....+. ..+.++.|++++..+++++.
T Consensus 196 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 274 (388)
T d1erja_ 196 QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274 (388)
T ss_dssp EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCCC-CCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 1100001-245442112368878758997389819996345573000102443334577898789999799999999978
Q ss_pred CCEEEEEECCCCE------------EEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCC
Q ss_conf 9929999889960------------899951799984799992999999999499-099998788998613888314998
Q 002495 781 ENVVSILDAETQA------------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 847 (915)
Q Consensus 781 dg~I~i~D~~t~~------------~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~ 847 (915)
|+.|++||+++.. +......|...|.+++|+|++++|++++.| .|++||++++ +++..+.+|..
T Consensus 275 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H~~ 351 (388)
T d1erja_ 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRN 351 (388)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEEEECCCC
T ss_conf 992898751577643210134442001101245532789998899999999969897999999999---69999968899
Q ss_pred CEEEEEE------ECCCCEEEEEECCCEEEEEECCC
Q ss_conf 5399999------17999899998698099998899
Q 002495 848 KFHSCVF------HPTYPSLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 848 ~i~~i~~------spdg~~lisgs~dg~I~iwd~~~ 877 (915)
.|.++.+ +|++.+|++++.|+.|+||+++.
T Consensus 352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEE
T ss_conf 789999846742589999999991899799976214
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-28 Score=241.62 Aligned_cols=283 Identities=18% Similarity=0.314 Sum_probs=217.4
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 30244574159998599999389999999978991999978998234673247986789999899998999838980999
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~i 703 (915)
.++....+++|.+.|.+ +++++|++||+|+.||+|+|||+.+++++.++.+|...|.+++|+++ +|++++.|+.+++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKV 81 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEE
T ss_pred CCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCCCCC
T ss_conf 88758898886875099-99978999999918990999989999799999488999899994798--6321000001111
Q ss_pred EECCCCCCEEEEECCCCCCEEE--------------------------------------EEECCCCCEEEEEEECCCCE
Q ss_conf 9778999547884257887589--------------------------------------99748999199998189819
Q 002495 704 WDADNPGYSLRTFMGHSASVMS--------------------------------------LDFHPNKDDLICSCDGDGEI 745 (915)
Q Consensus 704 wdl~~~~~~~~~~~~h~~~V~s--------------------------------------i~fsp~~~~ll~sgs~Dg~I 745 (915)
|+... .........+...+.. ..+..... ++++++.|+.|
T Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i 159 (342)
T d2ovrb2 82 WNAET-GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMV 159 (342)
T ss_dssp EETTT-TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSS-CEEEEETTSCE
T ss_pred CCCCC-CCCEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCC-EEEEECCCCEE
T ss_conf 11110-00000012333047652024652212344403787403556300111001111000001333-02433589869
Q ss_pred EEEECCCCEEEEEEECCC-EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-
Q ss_conf 999947990578862681-079991399989999849929999889960899951799984799992999999999499-
Q 002495 746 RYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 823 (915)
Q Consensus 746 ~iwdi~~~~~~~~~~~~~-~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d- 823 (915)
++||.+..+++..+.++. ....+..++..+++++.|+.|++||++..+++..+.+|...+.++.++ +++|++++.|
T Consensus 160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~ 237 (342)
T d2ovrb2 160 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS 237 (342)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred EEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECC--CCEEEEECCCC
T ss_conf 9952523436678727544421006899999999589939995255653656741665320577068--99999974898
Q ss_pred EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EE-----CCCCCCEEEEEEEC
Q ss_conf 0999987889986138883149985399999179998999986980999988999289-98-----15689869999937
Q 002495 824 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL-----TAHEGLIAALAVST 897 (915)
Q Consensus 824 ~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~-~~-----~~h~~~V~~ia~sp 897 (915)
.|++||+........+.....|...+.++.++ +.++++++.|+.|++||+++++.+ .+ .+|.+.|++++|+|
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315 (342)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred EEEEEECCCCCCCCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECC
T ss_conf 89998655442211122100011010000137--9844999089989999999997989986234789889789999879
Q ss_pred CCCEEEEEECCCC----EEECC
Q ss_conf 9999999966982----99909
Q 002495 898 ETGYVASASHDKF----VKLWK 915 (915)
Q Consensus 898 dg~~Lasgs~Dg~----I~IWd 915 (915)
++.+|++|+.||+ |++||
T Consensus 316 ~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 316 TKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp SEEEEEEECSSSSSCCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEEE
T ss_conf 9989999968999704899993
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1e-26 Score=231.40 Aligned_cols=271 Identities=23% Similarity=0.462 Sum_probs=237.6
Q ss_pred CCEEEEECCCCCEEC---CCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 750899708981102---79980684777116652100002688777534410268999878888643235675302445
Q 002495 553 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 629 (915)
Q Consensus 553 ~~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 629 (915)
...+.|+|++.++++ ++.++|||+.++ +.+.
T Consensus 20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~----------------------------------------------~~~~ 53 (317)
T d1vyhc1 20 VTRVIFHPVFSVMVSASEDATIKVWDYETG----------------------------------------------DFER 53 (317)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTC----------------------------------------------CCCE
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCC----------------------------------------------CEEE
T ss_conf 689999389899999938992999989999----------------------------------------------7999
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 74159998599999389999999978991999978998234673247986789999899998999838980999977899
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 709 (915)
Q Consensus 630 ~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~ 709 (915)
++++|.+.|.+++|++++.+++++..++.+.+|+....+....+..|...+.++.|++++..+++++.|+.+++|++++
T Consensus 54 ~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~- 132 (317)
T d1vyhc1 54 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT- 132 (317)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-
T ss_pred EEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCC-
T ss_conf 9957888677776301111011111111101110011111111000000000000169985577652675235751144-
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECC---------------
Q ss_conf 9547884257887589997489991999981898199999479905788626---8107999139---------------
Q 002495 710 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPH--------------- 771 (915)
Q Consensus 710 ~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~--------------- 771 (915)
+..+..+.+|...+.+++|++++. +|++++.|+.|++|++.+.+....+.. .+..+.+.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 211 (317)
T d1vyhc1 133 GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 211 (317)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred CEEEEEECCCCCCCEEEECCCCCC-EEEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEE
T ss_conf 303468716777630000166799-9999927982999751254034788247787337998632564111034563034
Q ss_pred -----CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCC
Q ss_conf -----9989999849929999889960899951799984799992999999999499-0999987889986138883149
Q 002495 772 -----LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 845 (915)
Q Consensus 772 -----~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~ 845 (915)
+..+++++.|+.|++||.++++++.++.+|...|.+++|+|++++|++++.| .|++||+.++ +++..+..|
T Consensus 212 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h 288 (317)
T d1vyhc1 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAH 288 (317)
T ss_dssp -----CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECC
T ss_pred EECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEEECCC
T ss_conf 30258861475169978999888999688999688998799998799999999979894999999999---199999289
Q ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 98539999917999899998698099998
Q 002495 846 GNKFHSCVFHPTYPSLLVIGCYQSLELWN 874 (915)
Q Consensus 846 ~~~i~~i~~spdg~~lisgs~dg~I~iwd 874 (915)
...|++++|+|++.+|++++.|+.|+|||
T Consensus 289 ~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 99889999949999999992899499829
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=7.7e-27 Score=232.44 Aligned_cols=278 Identities=20% Similarity=0.313 Sum_probs=217.1
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC--CCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 302445741599985999993899999999789919999789982346732479--867899998999989998389809
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS--SLITDVRFSPSMPRLATSSFDKTV 701 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~--~~V~~i~fspdg~~Lasgs~Dg~I 701 (915)
+.+.+.++++|.+.|++++|++++ +|++++.|++|++|+.............. ..+..+.+.+++.++++++.|+.|
T Consensus 42 ~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 120 (355)
T d1nexb2 42 NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120 (355)
T ss_dssp TTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCC-EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCE
T ss_conf 993999997899988999986999-9999964524432111111111111001111111111111232204554388868
Q ss_pred EEEECCCCCCE----------------------EEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 99977899954----------------------78842578875899974899919999818981999994799057886
Q 002495 702 RVWDADNPGYS----------------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 759 (915)
Q Consensus 702 ~iwdl~~~~~~----------------------~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~ 759 (915)
++|++...... ......|...+...... + .+++++..|+.|++||+++++.+..+
T Consensus 121 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~~~~~d~~i~~~d~~~~~~~~~~ 197 (355)
T d1nexb2 121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--G-NIVVSGSYDNTLIVWDVAQMKCLYIL 197 (355)
T ss_dssp EEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCCCCCCC--C-CEEEEECCCCEEEEEECCCCCCEEEE
T ss_conf 99985677300124652000100000112340121011002221000025--6-33442114420444301311000110
Q ss_pred EC---CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCC
Q ss_conf 26---81079991399989999849929999889960899951799984799992999999999499-099998788998
Q 002495 760 KG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE 835 (915)
Q Consensus 760 ~~---~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~ 835 (915)
.. ....+.+++.+..+++++.|+.|++||.+++.++..+.+|...|.++.|+ +++|++++.| .|++||+++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~- 274 (355)
T d1nexb2 198 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS- 274 (355)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC-
T ss_pred ECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCC-
T ss_conf 0012332111111210021012456368763012211111111111111111232--1003332011111111111111-
Q ss_pred CCEEEEECCCCCCEEEE-EEECCCCEEEEEECCCEEEEEECCCCCEE--EECCCCCCEEEEEEECCCCEEEEEECCCCEE
Q ss_conf 61388831499853999-99179998999986980999988999289--9815689869999937999999996698299
Q 002495 836 GECVHELSCNGNKFHSC-VFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVK 912 (915)
Q Consensus 836 ~~~i~~~~~~~~~i~~i-~~spdg~~lisgs~dg~I~iwd~~~~~~~--~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~ 912 (915)
. .+..|...+..+ .+++++. +++++.|+.|++||+++++++ .+.+|.+.|++++|+++ .++++++.||.++
T Consensus 275 --~--~~~~~~~~~~~~~~~~~~~~-~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~ 348 (355)
T d1nexb2 275 --R--KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF 348 (355)
T ss_dssp --E--EEEEECTTCCCCCEEEECSS-EEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEE
T ss_pred --E--ECCCCCCCCEEEEEECCCCC-EEEEEECCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC-EEEEEEECCCCEE
T ss_conf --0--00124688229999849998-9999809979999999997988884589998999998399-1999998989099
Q ss_pred EC
Q ss_conf 90
Q 002495 913 LW 914 (915)
Q Consensus 913 IW 914 (915)
||
T Consensus 349 l~ 350 (355)
T d1nexb2 349 LE 350 (355)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.7e-26 Score=229.61 Aligned_cols=277 Identities=20% Similarity=0.338 Sum_probs=223.4
Q ss_pred EEEEEECCCCCE-EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 445741599985-9999938999999997899199997899823467324798678999989999899983898099997
Q 002495 627 EANSVRASTSKV-ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 627 ~~~~l~~H~~~V-~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwd 705 (915)
+..+|++|.+.| +|++| ++++||+|+.||+|+|||+.+++.+.++.+|.+.|++++|+++ .+|++++.|+.|++|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred CCEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCC
T ss_conf 758889837886999998--8999999918990999989999399999789998899998699-9999996452443211
Q ss_pred CCCCCCEEEEECCCCC--CEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE-----------------------
Q ss_conf 7899954788425788--758999748999199998189819999947990578862-----------------------
Q 002495 706 ADNPGYSLRTFMGHSA--SVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----------------------- 760 (915)
Q Consensus 706 l~~~~~~~~~~~~h~~--~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~----------------------- 760 (915)
+.. ............ .+..+.+.+++ .++++++.|+.|++||++.........
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T d1nexb2 81 IKK-GCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 158 (355)
T ss_dssp TTT-TEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEE
T ss_conf 111-1111111001111111111111232-20455438886899985677300124652000100000112340121011
Q ss_pred C-CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCE
Q ss_conf 6-81079991399989999849929999889960899951799984799992999999999499-099998788998613
Q 002495 761 G-GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 838 (915)
Q Consensus 761 ~-~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~ 838 (915)
. ......+.+++..++.+..|+.|++||+++.+.+..+.++...+.++.|++++.++++++.| .|++||++++ .+
T Consensus 159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~ 235 (355)
T d1nexb2 159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---EL 235 (355)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC---CE
T ss_pred ECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCC---CC
T ss_conf 002221000025633442114420444301311000110001233211111121002101245636876301221---11
Q ss_pred EEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEE-EEECCCCEEEEEECCCCEEECC
Q ss_conf 8883149985399999179998999986980999988999289981568986999-9937999999996698299909
Q 002495 839 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAAL-AVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 839 i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~~~~~h~~~V~~i-a~spdg~~Lasgs~Dg~I~IWd 915 (915)
+..+..|...+.++.+++ .+|++++.|+.|++||+.+.... +..|...+.++ ++++++.+|++| .|+.|+|||
T Consensus 236 ~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd 309 (355)
T d1nexb2 236 MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK-FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYN 309 (355)
T ss_dssp EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE-EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCEE-CCCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEE
T ss_conf 111111111111112321--00333201111111111111100-012468822999984999899998-099799999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=4.1e-27 Score=234.72 Aligned_cols=280 Identities=15% Similarity=0.183 Sum_probs=219.8
Q ss_pred CCEEEEECCCCCEECC---CCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 7508997089811027---9980684777116652100002688777534410268999878888643235675302445
Q 002495 553 KPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 629 (915)
Q Consensus 553 ~~~~~fs~dg~~~~~~---~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 629 (915)
..++.|++||..++++ +.++|||...+ .+..+.
T Consensus 10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~--------------------------------------------~~~~~~ 45 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGN--------------------------------------------KWVQVH 45 (371)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETT--------------------------------------------EEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCC--------------------------------------------CEEEEE
T ss_conf 389999899999999948898999988899--------------------------------------------789999
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 7415999859999938999999997899199997899823--46732479867899998999989998389809999778
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 707 (915)
Q Consensus 630 ~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~--~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~ 707 (915)
.+++|.+.|++++|+|++++|++++.|++|+|||+.+... ...+..|...|++++|+|++++|++++.|+.|++|+++
T Consensus 46 ~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~ 125 (371)
T d1k8kc_ 46 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125 (371)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEE
T ss_conf 95588998889999799999999979993999862033211001223221100011111112110000025763025442
Q ss_pred CCCCE---EEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCE------------------EEEEEE---CCC
Q ss_conf 99954---788425788758999748999199998189819999947990------------------578862---681
Q 002495 708 NPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS------------------CTRVFK---GGT 763 (915)
Q Consensus 708 ~~~~~---~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~------------------~~~~~~---~~~ 763 (915)
..... ......|...|.+++|+|++. +|++++.|+.|++|+..... ...... ..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 204 (371)
T d1k8kc_ 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 204 (371)
T ss_dssp TTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCE
T ss_conf 03343311100101112221111111111-10001347679998401576431001221111111101124404766747
Q ss_pred EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCE-----
Q ss_conf 079991399989999849929999889960899951799984799992999999999499099998788998613-----
Q 002495 764 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGEC----- 838 (915)
Q Consensus 764 ~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d~I~iwdl~s~~~~~~----- 838 (915)
.+++|+|++..+++++.|+.|++||+.++..+..+..|..+|.+++|++++.+|+++.++.+++|..........
T Consensus 205 ~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~ 284 (371)
T d1k8kc_ 205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL 284 (371)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCC
T ss_pred EEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEEEE
T ss_conf 89875123321000014786058864101210000014665203654699979999819926787760898628872020
Q ss_pred ---------------------------------EEEECCCCCCEEEEEEECCC----CEEEEEECCCEEEEEECCC
Q ss_conf ---------------------------------88831499853999991799----9899998698099998899
Q 002495 839 ---------------------------------VHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 839 ---------------------------------i~~~~~~~~~i~~i~~spdg----~~lisgs~dg~I~iwd~~~ 877 (915)
......|.+.|.++.+.+.+ ..|++++.||.|++||+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 285 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred CCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 6765421246220016850652058712455661412555698899999489986567999991899399996986
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.8e-26 Score=227.81 Aligned_cols=248 Identities=17% Similarity=0.263 Sum_probs=166.3
Q ss_pred EEEEEECCC-CCEEEEEECC--CCCEEEEEECCCCEEEEECCCCCEE--------EEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 445741599-9859999938--9999999978991999978998234--------6732479867899998999989998
Q 002495 627 EANSVRAST-SKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSK--------TNLEEHSSLITDVRFSPSMPRLATS 695 (915)
Q Consensus 627 ~~~~l~~H~-~~V~~iafsp--dg~~Latgs~Dg~I~iwd~~~~~~~--------~~l~~h~~~V~~i~fspdg~~Lasg 695 (915)
....+.+|. ..|++++|+| ++.+||+|+.||+|+|||+...+.. ..+..|...|.+++|++++++|+++
T Consensus 54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 133 (325)
T d1pgua1 54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133 (325)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred CEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEE
T ss_conf 02899078999889999811799979999948997798540588621565100254113656737799989998822010
Q ss_pred EC--CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCC
Q ss_conf 38--9809999778999547884257887589997489991999981898199999479905788626810799913999
Q 002495 696 SF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 773 (915)
Q Consensus 696 s~--Dg~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~ 773 (915)
+. ++.+++|+.++ +..+..+.+|...|.+++|++++..++++++.|+.|++||....+....+.
T Consensus 134 ~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~------------- 199 (325)
T d1pgua1 134 GEGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR------------- 199 (325)
T ss_dssp ECCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-------------
T ss_pred ECCCCCEEEEEEECC-CCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECC-------------
T ss_conf 012440478885023-311001200123432111123432068886211122111122110000000-------------
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCC-CCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEE
Q ss_conf 8999984992999988996089995179998479999299-9999999499-0999987889986138883149985399
Q 002495 774 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 851 (915)
Q Consensus 774 ~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spd-g~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~ 851 (915)
.+..|...|.+++|+|+ +.+|++++.| .|++||++++ .++..+..|...+..
T Consensus 200 -----------------------~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~~~v~~ 253 (325)
T d1pgua1 200 -----------------------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQG 253 (325)
T ss_dssp -----------------------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---CEEEECCBTTBCCCS
T ss_pred -----------------------CCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCC---CCCCCCCCCCCCCCC
T ss_conf -----------------------015777752776303453100001123321013430012---221111111111111
Q ss_pred EEEE---CCCCEEEEEECCCEEEEEECCCCCEE-EECCCCC--CEEE--EEEECCCCEEEEEECCCCEEECC
Q ss_conf 9991---79998999986980999988999289-9815689--8699--99937999999996698299909
Q 002495 852 CVFH---PTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG--LIAA--LAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 852 i~~s---pdg~~lisgs~dg~I~iwd~~~~~~~-~~~~h~~--~V~~--ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
+.|+ +++.+|++++.|+.|+|||+.+++++ .+..|.. .+.. +.+.+ +.+|++++.||.|+|||
T Consensus 254 ~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG-NGRIISLSLDGTLNFYE 324 (325)
T ss_dssp CEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEE-TTEEEEEETTSCEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECC-CCEEEEEECCCEEEEEE
T ss_conf 000000368999999958993999999999788999954874067699999889-99999997999999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.6e-25 Score=221.44 Aligned_cols=275 Identities=22% Similarity=0.431 Sum_probs=220.3
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 30244574159998599999389999999978991999978998234673247986789999899998999838980999
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~i 703 (915)
.++.+.....|...|+|++| |+++||+|+.||+|+|||+.+++++.++.+|...|++++| ++++|++++.|+.|++
T Consensus 4 ~~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~ 79 (293)
T d1p22a2 4 SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV 79 (293)
T ss_dssp CCCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred EEEEEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCC
T ss_conf 67898432899998899987--6999999928993999999999199999267787763423--6300210011101100
Q ss_pred EECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE---EECCC-EEEEEECCCCEEEEEE
Q ss_conf 9778999547884257887589997489991999981898199999479905788---62681-0799913999899998
Q 002495 704 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---FKGGT-AQMRFQPHLGRYLAAA 779 (915)
Q Consensus 704 wdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~---~~~~~-~~i~~sp~~~~ll~~~ 779 (915)
|++.. +........+....... ..... .++++..++.+++|+......... +..+. ....+......+++++
T Consensus 80 ~~~~~-~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s 155 (293)
T d1p22a2 80 WDVNT-GEMLNTLIHHCEAVLHL--RFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS 155 (293)
T ss_dssp EESSS-CCEEEEECCCCSCEEEE--ECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred CCCCC-CCCCCCCCCCCCCCCCC--CCCCC-CEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 00024-64100111111000011--11110-0000135663068613445444212100011354311000002201106
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCC
Q ss_conf 49929999889960899951799984799992999999999499-09999878899861388831499853999991799
Q 002495 780 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 858 (915)
Q Consensus 780 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg 858 (915)
.|+.|++||.++.+.+..+.++...+..+.++ +.++++++.| .|++||+++. ..+.....+...+.. +.++.
T Consensus 156 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~--~~~~~ 228 (293)
T d1p22a2 156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRC--IRFDN 228 (293)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEE--EECCS
T ss_pred CCCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCC---EEEEEECCCCEEEEE--CCCCC
T ss_conf 99860410078883889971554453221689--875887658998999866556---146652143100000--14541
Q ss_pred CEEEEEECCCEEEEEECCC---------CCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 9899998698099998899---------9289-9815689869999937999999996698299909
Q 002495 859 PSLLVIGCYQSLELWNMSE---------NKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 859 ~~lisgs~dg~I~iwd~~~---------~~~~-~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
.+|++++.|+.|++||+.. ...+ .+.+|.+.|++++|+ +.+|++|+.||+|+|||
T Consensus 229 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--CCEEEEEECCCEEEEEC
T ss_conf 079998679979999888886444567754557845889988999971--99999992299899959
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=6e-24 Score=208.52 Aligned_cols=270 Identities=23% Similarity=0.419 Sum_probs=227.5
Q ss_pred CCEEEEECCCCCEEC---CCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 750899708981102---79980684777116652100002688777534410268999878888643235675302445
Q 002495 553 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 629 (915)
Q Consensus 553 ~~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 629 (915)
...+.|++++.++++ ++.++|||+.++ +.+.
T Consensus 58 I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~----------------------------------------------~~~~ 91 (340)
T d1tbga_ 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTT----------------------------------------------NKVH 91 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTT----------------------------------------------EEEE
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCC----------------------------------------------EEEE
T ss_conf 889999899999999978995556310210----------------------------------------------2579
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC----CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 7415999859999938999999997899199997899----823467324798678999989999899983898099997
Q 002495 630 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 630 ~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~----~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwd 705 (915)
.+..|...|++++|+|++.++++++.|+.|++|+... ......+.+|...+.+..+.. +..++....|..+..|.
T Consensus 92 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 170 (340)
T d1tbga_ 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWD 170 (340)
T ss_dssp EEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
T ss_conf 97246533775676012114431013320101332222122211100135421101111111-11111112445432001
Q ss_pred CCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEECCC
Q ss_conf 78999547884257887589997489991999981898199999479905788626---810799913999899998499
Q 002495 706 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAEN 782 (915)
Q Consensus 706 l~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~dg 782 (915)
... .........+...+....+.+... ++++++.|+.|++||+++++++..+.+ .+.+++|+|++..+++++.|+
T Consensus 171 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~ 248 (340)
T d1tbga_ 171 IET-GQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp TTT-TEEEEEEECCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCC-CCCCCCCCCCCEEEEEECCCCCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 232-211111233101576300124421-268760573699999999948899957889858999979989999996999
Q ss_pred EEEEEECCCCEEEEEEC--CCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCC
Q ss_conf 29999889960899951--799984799992999999999499-099998788998613888314998539999917999
Q 002495 783 VVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 859 (915)
Q Consensus 783 ~I~i~D~~t~~~~~~l~--~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~ 859 (915)
.|++||++.......+. .+...|.+++|++++.+|++++.| .|++||+.++ .++..+.+|...|.+++|+|++.
T Consensus 249 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~H~~~V~~l~~s~d~~ 325 (340)
T d1tbga_ 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGM 325 (340)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC---CEEEEECCCCCCEEEEEEECCCC
T ss_conf 699975212211111112244574589999899999999979798999999999---39899848999789999908999
Q ss_pred EEEEEECCCEEEEEE
Q ss_conf 899998698099998
Q 002495 860 SLLVIGCYQSLELWN 874 (915)
Q Consensus 860 ~lisgs~dg~I~iwd 874 (915)
+|++++.|+.|++||
T Consensus 326 ~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEECCCCEEEEEC
T ss_conf 999990699799859
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=7.8e-26 Score=224.11 Aligned_cols=269 Identities=12% Similarity=0.177 Sum_probs=222.7
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 30244574159998599999389999999978991999978998234673247986789999899998999838980999
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 703 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~i 703 (915)
.-+.+.++++|.+.|+|++|++ |++|+.||+|++||+.+. ...|...|.++.|+++ ..+++++.|++|++
T Consensus 2 ~~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~ 71 (287)
T d1pgua2 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKV 71 (287)
T ss_dssp EEEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEE
T ss_pred CCCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCC-CEEEEEEECCCCCC
T ss_conf 9603499988798649999895----789848991999989998-----8887787899996599-72898861012221
Q ss_pred EECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECCC-
Q ss_conf 9778999547884257887589997489991999981898199999479905788626810799913999899998499-
Q 002495 704 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN- 782 (915)
Q Consensus 704 wdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~dg- 782 (915)
|++... .....+.++.+.+++. ++ ....++.+.+|+..+++.+..+........+.+++..+++++.++
T Consensus 72 w~~~~~--------~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 141 (287)
T d1pgua2 72 NGITKH--------EFGSQPKVASANNDGF-TA-VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 141 (287)
T ss_dssp TTEEEE--------ECSSCEEEEEECSSSE-EE-EEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred CCCCCC--------CCCCCEEEEEECCCCC-EE-EEEECCCCEEEECCCEEEEEECCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 111111--------1122101466416785-69-9960332100001100354310122203565214751110002210
Q ss_pred EEEEEECCCCEEEEEECC-CCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECC---
Q ss_conf 299998899608999517-99984799992999999999499-0999987889986138883149985399999179---
Q 002495 783 VVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT--- 857 (915)
Q Consensus 783 ~I~i~D~~t~~~~~~l~~-h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spd--- 857 (915)
.+++|++........+.. +...+++++|+|++.+|++++.| .|++||+.++. .....+..|...+.+++|+|.
T Consensus 142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~ 219 (287)
T d1pgua2 142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE--VKTSRWAFRTSKINAISWKPAEKG 219 (287)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEECCSCCCSSCEEEEEECCCC--
T ss_pred EEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCC--CCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 002100012210001210247853699951676521101111110000002332--110001111111100000136541
Q ss_pred -------CCEEEEEECCCEEEEEECCC-CCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf -------99899998698099998899-9289-9815689869999937999999996698299909
Q 002495 858 -------YPSLLVIGCYQSLELWNMSE-NKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 858 -------g~~lisgs~dg~I~iwd~~~-~~~~-~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
+.++++++.|+.|++||+.. .+.+ .+.+|...|++++|++++ .|++++.|+.|++|+
T Consensus 220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285 (287)
T ss_dssp ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred CCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEE
T ss_conf 001267887027664999599988899975899927878985899998999-899997999299999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.7e-26 Score=225.27 Aligned_cols=289 Identities=13% Similarity=0.046 Sum_probs=214.7
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE---EEECCCCCCEEEEEECCCC-CEEEEEECCCEE
Q ss_conf 244574159998599999389999999978991999978998234---6732479867899998999-989998389809
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK---TNLEEHSSLITDVRFSPSM-PRLATSSFDKTV 701 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~---~~l~~h~~~V~~i~fspdg-~~Lasgs~Dg~I 701 (915)
+.+....+|.+.|++|+|+|++++||+|+.||+|+|||+...... ....+|...|++++|++++ .+|++|+.|+.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCE
T ss_conf 75976889989788899958999999997999299997569986368988558999889999958999789981265311
Q ss_pred EEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE----E-----CCCEEEEEECCC
Q ss_conf 9997789995478842578875899974899919999818981999994799057886----2-----681079991399
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----K-----GGTAQMRFQPHL 772 (915)
Q Consensus 702 ~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~----~-----~~~~~i~~sp~~ 772 (915)
++|++............+........+.++ ...+++++.++.+++||++........ . .......+.+..
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCC
T ss_conf 454204432000001111111111111111-1111110122211102023444330230002430012000001000168
Q ss_pred CEEEEEECCCEEEEEECCCCEE---EEEECCCCCCEEEEEECC-CCCEEEEEECC-EEEEEECCCCCCCC------EE--
Q ss_conf 9899998499299998899608---999517999847999929-99999999499-09999878899861------38--
Q 002495 773 GRYLAAAAENVVSILDAETQAC---RLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGE------CV-- 839 (915)
Q Consensus 773 ~~ll~~~~dg~I~i~D~~t~~~---~~~l~~h~~~V~si~~sp-dg~~las~s~d-~I~iwdl~s~~~~~------~i-- 839 (915)
..+++++.|+.|++||++.... ..........+.++.+.+ ++..+++++.| .+.+|++....... ..
T Consensus 161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~ 240 (342)
T d1yfqa_ 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred CCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEE
T ss_conf 70246517984788760567634111210254221014676369998788654899599998059864011123512565
Q ss_pred ----EEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf ----8831499853999991799989999869809999889992899815689869999937999999996698299909
Q 002495 840 ----HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 840 ----~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
.....+...+.+++|+|++.+|++++.||.|++||+.+++.+....+...+..++|++++.++++++.|+.+++|.
T Consensus 241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred EEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCEEEEE
T ss_conf 55314777623543159966984479998799989999999894988705899987999994799999999199278830
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.4e-24 Score=213.69 Aligned_cols=288 Identities=14% Similarity=0.188 Sum_probs=210.6
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE------EEEECCCCCCEEEEEE------CC-CCCE
Q ss_conf 024457415999859999938999999997899199997899823------4673247986789999------89-9998
Q 002495 625 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRF------SP-SMPR 691 (915)
Q Consensus 625 ~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~------~~~l~~h~~~V~~i~f------sp-dg~~ 691 (915)
.......++|.+.|+++++++ ++|++++.|++|+|||..+... ......|...+..+.+ .. +..+
T Consensus 4 ~~~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (393)
T d1sq9a_ 4 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 81 (393)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred EEEEECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCE
T ss_conf 824520876367127999969--999999799969987898788776540467654204771676667500157998768
Q ss_pred EEEEECCCEEEEEECCCCCCEEEE---------ECCCCCCEEEEEECCCC----CEEEEEEECCCCEEEEECCCCE----
Q ss_conf 999838980999977899954788---------42578875899974899----9199998189819999947990----
Q 002495 692 LATSSFDKTVRVWDADNPGYSLRT---------FMGHSASVMSLDFHPNK----DDLICSCDGDGEIRYWSINNGS---- 754 (915)
Q Consensus 692 Lasgs~Dg~I~iwdl~~~~~~~~~---------~~~h~~~V~si~fsp~~----~~ll~sgs~Dg~I~iwdi~~~~---- 754 (915)
+++++.||.|++|++......... ...+...+..++|.++. ..++++++.||.|++|++....
T Consensus 82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~ 161 (393)
T d1sq9a_ 82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 161 (393)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCC
T ss_conf 99994899199998228982056512456324311578966899984478865421799983898199987404775341
Q ss_pred -----------EEEEE------ECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE------CCCCCCEEEEEEC
Q ss_conf -----------57886------268107999139998999984992999988996089995------1799984799992
Q 002495 755 -----------CTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWD 811 (915)
Q Consensus 755 -----------~~~~~------~~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l------~~h~~~V~si~~s 811 (915)
..... ...+.++.|++++ .+++++.|+.|++||+++++++..+ .+|..+|++++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 240 (393)
T d1sq9a_ 162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240 (393)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred EEEEEECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 02331032000145100025789867899978999-89999389829998602332110000111112425638770046
Q ss_pred CCCCEEEEEECC-E---EEEEECCCCCCCCEE----------EEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 999999999499-0---999987889986138----------88314998539999917999899998698099998899
Q 002495 812 PSGELLASVSED-S---VRVWTVGSGSEGECV----------HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 877 (915)
Q Consensus 812 pdg~~las~s~d-~---I~iwdl~s~~~~~~i----------~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~ 877 (915)
|++++|++++.| . |++||+.++.....+ ..+.+|...|++++|+|++++|++++.|+.|++||+.+
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCC
T ss_conf 65320112428988421001035321344431156666431023202358666001389888069877999899999999
Q ss_pred CCEE-EECCCCC---------------------CEEEEEEECCC----------CEEEEEECCCCEEECC
Q ss_conf 9289-9815689---------------------86999993799----------9999996698299909
Q 002495 878 NKTM-TLTAHEG---------------------LIAALAVSTET----------GYVASASHDKFVKLWK 915 (915)
Q Consensus 878 ~~~~-~~~~h~~---------------------~V~~ia~spdg----------~~Lasgs~Dg~I~IWd 915 (915)
++++ .+.+|.+ .+.++.|.+.+ ..|++++.|+.|++|+
T Consensus 321 g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 321 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEE
T ss_conf 9799999886876137734899999999999831246998866766312368899799999199089990
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=5.8e-24 Score=208.61 Aligned_cols=269 Identities=16% Similarity=0.177 Sum_probs=204.3
Q ss_pred CCEEEEECCCCCEEC---CCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 750899708981102---79980684777116652100002688777534410268999878888643235675302445
Q 002495 553 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 629 (915)
Q Consensus 553 ~~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 629 (915)
...+.|+|||.++++ ++.+++||+.++.. ..
T Consensus 15 V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~----------------------------------------------~~ 48 (299)
T d1nr0a2 15 ITALSSSADGKTLFSADAEGHINSWDISTGIS----------------------------------------------NR 48 (299)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCE----------------------------------------------EE
T ss_pred CEEEEECCCCCEEEEECCCCEEEEEECCCCCE----------------------------------------------EE
T ss_conf 28999979999999990899299999999968----------------------------------------------89
Q ss_pred EE-ECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC---EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 74-1599985999993899999999789919999789982---3467324798678999989999899983898099997
Q 002495 630 SV-RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK---SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 705 (915)
Q Consensus 630 ~l-~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~---~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwd 705 (915)
.+ .+|...|++++|++++.++ +++.|+.|++|+..... .......+...+.++.|++++.++++++ ++.+++|+
T Consensus 49 ~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~ 126 (299)
T d1nr0a2 49 VFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYS 126 (299)
T ss_dssp CSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEE
T ss_pred EECCCCCCCEEEEEEECCCEEE-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf 9837887748998840331121-023102688731677620111000111134432100112211111222-22221111
Q ss_pred CCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE----ECCCEEEEEECCCCEEEEEECC
Q ss_conf 789995478842578875899974899919999818981999994799057886----2681079991399989999849
Q 002495 706 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGRYLAAAAE 781 (915)
Q Consensus 706 l~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~----~~~~~~i~~sp~~~~ll~~~~d 781 (915)
... ..... ....+.+++|+|++. ++++++.|+.|++||+++.+..... ...+.++.|++++..+++++.+
T Consensus 127 ~~~---~~~~~--~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 200 (299)
T d1nr0a2 127 HGK---LTEVP--ISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS 200 (299)
T ss_dssp TTE---EEEEE--CSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCC---CCCCC--CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 111---11101--111233221111111-111111111111111111111111111111111111111111111111111
Q ss_pred CEEEEEECCCCEEE---EEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECC
Q ss_conf 92999988996089---9951799984799992999999999499-0999987889986138883149985399999179
Q 002495 782 NVVSILDAETQACR---LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 857 (915)
Q Consensus 782 g~I~i~D~~t~~~~---~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spd 857 (915)
+.|++||+.+.... ..+.+|...|++++|+|++.+|++++.| .|++||++++.....+.....+...+.++.| ++
T Consensus 201 ~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~ 279 (299)
T d1nr0a2 201 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LN 279 (299)
T ss_dssp SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-CC
T ss_conf 11111111111111111111111111111124666451388828997999989999731489834898896899997-79
Q ss_pred CCEEEEEECCCEEEEEECC
Q ss_conf 9989999869809999889
Q 002495 858 YPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 858 g~~lisgs~dg~I~iwd~~ 876 (915)
+.+|++++.|+.|++||+.
T Consensus 280 ~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 280 ETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TTEEEEEETTSCEEEEECC
T ss_pred CCEEEEEECCCEEEEEECC
T ss_conf 8999999289979999444
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.8e-22 Score=196.37 Aligned_cols=209 Identities=16% Similarity=0.277 Sum_probs=149.3
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEEC--CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCE-EEEEECCCEEE
Q ss_conf 244574159998599999389999999978--991999978998234673247986789999899998-99983898099
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVR 702 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~iafspdg~~Latgs~--Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~-Lasgs~Dg~I~ 702 (915)
.....+..|.+.|.+++|++++++|++++. ++.+.+|+.++++.+..+.+|...|++++|++++.+ +++++.|+.|+
T Consensus 106 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~ 185 (325)
T d1pgua1 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185 (325)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEE
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 02541136567377999899988220100124404788850233110012001234321111234320688862111221
Q ss_pred EEECCCCCCEEEE---ECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 9977899954788---4257887589997489991999981898199999479905788626810799913999899998
Q 002495 703 VWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 779 (915)
Q Consensus 703 iwdl~~~~~~~~~---~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~ 779 (915)
+|+... ...... ...|...|.+++|+|++..++++++.|+.|++||+++++++..+.++...
T Consensus 186 ~~d~~~-~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~-------------- 250 (325)
T d1pgua1 186 FYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP-------------- 250 (325)
T ss_dssp EEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC--------------
T ss_pred CCCCCC-CCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCC--------------
T ss_conf 111221-10000000015777752776303453100001123321013430012221111111111--------------
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCC--EE--EEEE
Q ss_conf 49929999889960899951799984799992999999999499-0999987889986138883149985--39--9999
Q 002495 780 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FH--SCVF 854 (915)
Q Consensus 780 ~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~--i~--~i~~ 854 (915)
+...+.++.| +++.+|++++.| .|+|||++++ +++..+..+... +. .+.+
T Consensus 251 ---------------------v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~ 305 (325)
T d1pgua1 251 ---------------------VQGGIFALSW-LDSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVA 305 (325)
T ss_dssp ---------------------CCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEE
T ss_pred ---------------------CCCCEEEEEC-CCCCEEEEEECCCEEEEEECCCC---CEEEEEEECCCCCCCEEEEEEE
T ss_conf ---------------------1110000003-68999999958993999999999---7889999548740676999998
Q ss_pred ECCCCEEEEEECCCEEEEEEC
Q ss_conf 179998999986980999988
Q 002495 855 HPTYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 855 spdg~~lisgs~dg~I~iwd~ 875 (915)
.+ ..+|++++.|+.|++||+
T Consensus 306 ~~-~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 306 TG-NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EE-TTEEEEEETTSCEEEEET
T ss_pred CC-CCEEEEEECCCEEEEEEC
T ss_conf 89-999999979999999979
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.8e-22 Score=191.01 Aligned_cols=262 Identities=20% Similarity=0.366 Sum_probs=188.7
Q ss_pred EEECCCCCEEC---CCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 99708981102---799806847771166521000026887775344102689998788886432356753024457415
Q 002495 557 MFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRA 633 (915)
Q Consensus 557 ~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~ 633 (915)
+++++|.++++ ++.++|||+.+++ .+.++.+
T Consensus 22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~----------------------------------------------~~~~~~~ 55 (342)
T d2ovrb2 22 CLQFCGNRIVSGSDDNTLKVWSAVTGK----------------------------------------------CLRTLVG 55 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCC----------------------------------------------EEEECCC
T ss_pred EEEECCCEEEEEECCCEEEEEECCCCC----------------------------------------------EEEEEEC
T ss_conf 999789999999189909999899997----------------------------------------------9999948
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE----------------------------------------EEE
Q ss_conf 9998599999389999999978991999978998234----------------------------------------673
Q 002495 634 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK----------------------------------------TNL 673 (915)
Q Consensus 634 H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~----------------------------------------~~l 673 (915)
|.+.|++++|+++ +|++++.|+.+++|+....... ..+
T Consensus 56 h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 133 (342)
T d2ovrb2 56 HTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 133 (342)
T ss_dssp CSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred CCCCEEEEEECCC--CCCCCEECCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEE
T ss_conf 8999899994798--63210000011111111000000012333047652024652212344403787403556300111
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCC
Q ss_conf 24798678999989999899983898099997789995478842578875899974899919999818981999994799
Q 002495 674 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 753 (915)
Q Consensus 674 ~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~ 753 (915)
..+..... .+......+++++.|+.|++|+... ...+..+.+|...+..+.+. +. ++++++.||.|++||++..
T Consensus 134 ~~~~~~~~--~~~~~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~--~~-~l~s~~~dg~i~~~d~~~~ 207 (342)
T d2ovrb2 134 MGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPET-ETCLHTLQGHTNRVYSLQFD--GI-HVVSGSLDTSIRVWDVETG 207 (342)
T ss_dssp ECCSSCEE--EEEECSSCEEEEETTSCEEEEEGGG-TEEEEEECCCSSCEEEEEEC--SS-EEEEEETTSCEEEEETTTC
T ss_pred ECCCCCCE--EECCCCCEEEEECCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCC--CC-EEEEEECCCEEEEEECCCC
T ss_conf 00111100--0001333024335898699952523-43667872754442100689--99-9999958993999525565
Q ss_pred EEEEEEECCC-EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECC---CCCCEEEEEECCCCCEEEEEECC-EEEEE
Q ss_conf 0578862681-0799913999899998499299998899608999517---99984799992999999999499-09999
Q 002495 754 SCTRVFKGGT-AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVW 828 (915)
Q Consensus 754 ~~~~~~~~~~-~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~---h~~~V~si~~spdg~~las~s~d-~I~iw 828 (915)
+++..+..+. ....+.++++.+++++.|+.|++||....+....+.. |...+.++.++ ++++++++.| .|++|
T Consensus 208 ~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iw 285 (342)
T d2ovrb2 208 NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW 285 (342)
T ss_dssp CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred EEEEEECCCCCCEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEE
T ss_conf 36567416653205770689999997489889998655442211122100011010000137--9844999089989999
Q ss_pred ECCCCCCCCEEEEE-----CCCCCCEEEEEEECCCCEEEEEECCC----EEEEEECCC
Q ss_conf 87889986138883-----14998539999917999899998698----099998899
Q 002495 829 TVGSGSEGECVHEL-----SCNGNKFHSCVFHPTYPSLLVIGCYQ----SLELWNMSE 877 (915)
Q Consensus 829 dl~s~~~~~~i~~~-----~~~~~~i~~i~~spdg~~lisgs~dg----~I~iwd~~~ 877 (915)
|++++ +++..+ ..|...|++++|+|++.++++++.|| .|++||+..
T Consensus 286 d~~tg---~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 286 DLKTG---EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ETTTC---CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ECCCC---CEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 99999---79899862347898897899998799989999968999704899993899
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.92 E-value=4.7e-24 Score=209.40 Aligned_cols=276 Identities=8% Similarity=-0.032 Sum_probs=207.2
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCC--CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 5999859999938999999997899--19999789982346732479867899998999989998389809999778999
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 710 (915)
Q Consensus 633 ~H~~~V~~iafspdg~~Latgs~Dg--~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~ 710 (915)
+|...|.+++|+|||++|++++.+. .|++||+++++ ...+..|...|.+++|+|++++|++++.++.+++|++.. +
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~-~ 117 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-G 117 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-C
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCC-EEEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCC-C
T ss_conf 69998888999899999999992899899999899994-887508971277412114543210001111100000122-2
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEE---------ECCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEE
Q ss_conf 54788425788758999748999199998---------1898199999479905788626--810799913999899998
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSC---------DGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAA 779 (915)
Q Consensus 711 ~~~~~~~~h~~~V~si~fsp~~~~ll~sg---------s~Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~~ 779 (915)
.....+..+...+.+++|+|++..++++. ..++.+++|++.+++....... ....+.|++++..+++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 10000001355202301213225665212331211000256542663045571353035432211001257799999995
Q ss_pred CCCEEEEEECCCCEE-------EEEECCCCCCEEEEEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEECCCCCC
Q ss_conf 499299998899608-------99951799984799992999999999499----0999987889986138883149985
Q 002495 780 AENVVSILDAETQAC-------RLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 848 (915)
Q Consensus 780 ~dg~I~i~D~~t~~~-------~~~l~~h~~~V~si~~spdg~~las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~ 848 (915)
.++.+.+||...... ...+..+...+..+.|++++..++++..+ ..++|.+.... .....+..+...
T Consensus 198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 275 (360)
T d1k32a3 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GDYRMIIPLESS 275 (360)
T ss_dssp SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BCEEEEEECSSE
T ss_pred CCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCC--CCEEEEEECCCC
T ss_conf 998557533354402320364117985246960120687776715531136526654001012476--752675413898
Q ss_pred EEEEEEECCC---CEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 3999991799---989999869809999889992899815689869999937999999996698299909
Q 002495 849 FHSCVFHPTY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 849 i~~i~~spdg---~~lisgs~dg~I~iwd~~~~~~~~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
+..+.+...+ .+++.++.++.|++||+.+++...+. +.|.+++|+|||++|++++.||.|++|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~v~~~~~SpDG~~l~~~~~Dg~i~v~d 342 (360)
T d1k32a3 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKDDGKIYTFP 342 (360)
T ss_dssp EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEC---CCCCEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 569999735997069996489987999979997498864---8868799999898999997899499999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4e-20 Score=176.82 Aligned_cols=266 Identities=21% Similarity=0.398 Sum_probs=210.7
Q ss_pred CCCEEEEECCCCCEEC---CCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 9750899708981102---7998068477711665210000268877753441026899987888864323567530244
Q 002495 552 SKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 628 (915)
Q Consensus 552 ~~~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 628 (915)
.+.+.++++||.++++ ++.++|||+.+ .+.+
T Consensus 15 ~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~----------------------------------------------~~~~ 48 (293)
T d1p22a2 15 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNT----------------------------------------------LECK 48 (293)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSS----------------------------------------------CCEE
T ss_pred CCCEEEEEECCCEEEEEECCCEEEEEECCC----------------------------------------------CCEE
T ss_conf 998899987699999992899399999999----------------------------------------------9199
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 57415999859999938999999997899199997899823467324798678999989999899983898099997789
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 708 (915)
Q Consensus 629 ~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~ 708 (915)
.++++|.+.|+|++| ++++|++|+.|+.|++|++..+........+.....+ +......++++..++.+++|+...
T Consensus 49 ~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 124 (293)
T d1p22a2 49 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH--LRFNNGMMVTCSKDRSIAVWDMAS 124 (293)
T ss_dssp EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE--EECCTTEEEEEETTSCEEEEECSS
T ss_pred EEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCEEEEECCC
T ss_conf 999267787763423--6300210011101100000246410011111100001--111110000013566306861344
Q ss_pred CCC--EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEE-EEEECCCCEEEEEECCCEEE
Q ss_conf 995--478842578875899974899919999818981999994799057886268107-99913999899998499299
Q 002495 709 PGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-MRFQPHLGRYLAAAAENVVS 785 (915)
Q Consensus 709 ~~~--~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~-i~~sp~~~~ll~~~~dg~I~ 785 (915)
... ....+..|...|.++.+.+. .+++++.|+.|++||+++.+++..+.+.... ..+.+.+..+++++.|+.|+
T Consensus 125 ~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 201 (293)
T d1p22a2 125 PTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 201 (293)
T ss_dssp SSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCC---CCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEE
T ss_conf 5444212100011354311000002---2011069986041007888388997155445322168987588765899899
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCC------CCCEEEEECCCCCCEEEEEEECCC
Q ss_conf 99889960899951799984799992999999999499-09999878899------861388831499853999991799
Q 002495 786 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS------EGECVHELSCNGNKFHSCVFHPTY 858 (915)
Q Consensus 786 i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~------~~~~i~~~~~~~~~i~~i~~spdg 858 (915)
+||+++...+..+.++...+.. +.+++.+|++++.| .|++||+.... ...++..+..|...|.+++|+ +
T Consensus 202 i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~ 277 (293)
T d1p22a2 202 LWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--E 277 (293)
T ss_dssp EEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--S
T ss_pred EEECCCCEEEEEECCCCEEEEE--CCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--C
T ss_conf 9866556146652143100000--14541079998679979999888886444567754557845889988999971--9
Q ss_pred CEEEEEECCCEEEEEE
Q ss_conf 9899998698099998
Q 002495 859 PSLLVIGCYQSLELWN 874 (915)
Q Consensus 859 ~~lisgs~dg~I~iwd 874 (915)
.+|++++.|+.|++||
T Consensus 278 ~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 278 FQIVSSSHDDTILIWD 293 (293)
T ss_dssp SCEEECCSSSEEEEEC
T ss_pred CEEEEEECCCEEEEEC
T ss_conf 9999992299899959
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1e-21 Score=190.07 Aligned_cols=279 Identities=10% Similarity=0.071 Sum_probs=196.0
Q ss_pred CCCEEEEECCCCCEEC---CCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 9750899708981102---7998068477711665210000268877753441026899987888864323567530244
Q 002495 552 SKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEA 628 (915)
Q Consensus 552 ~~~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 628 (915)
....+.|+|++.++++ ++.++|||+.... .....
T Consensus 13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~-------------------------------------------~~~~~ 49 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQA-------------------------------------------KNVDL 49 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTT-------------------------------------------TEEEE
T ss_pred CEEEEEEECCCCEEEEEECCCEEEEEECCCCC-------------------------------------------CCEEE
T ss_conf 78889995899999999799929999756998-------------------------------------------63689
Q ss_pred EEEECCCCCEEEEEECCCC-CEEEEEECCCCEEEEECCCCCEEEEECCCCC-CEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 5741599985999993899-9999997899199997899823467324798-6789999899998999838980999977
Q 002495 629 NSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 629 ~~l~~H~~~V~~iafspdg-~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~-~V~~i~fspdg~~Lasgs~Dg~I~iwdl 706 (915)
....+|...|+|++|++++ .+|++|+.|+.|++|++...........+.. ......+.++...+++++.|+.+++||+
T Consensus 50 ~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~ 129 (342)
T d1yfqa_ 50 LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp EEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECH
T ss_pred EEECCCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 88558999889999958999789981265311454204432000001111111111111111111111012221110202
Q ss_pred CCCCCEE---EEECCC--CCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE------CCCEEEEEE-CCCCE
Q ss_conf 8999547---884257--88758999748999199998189819999947990578862------681079991-39998
Q 002495 707 DNPGYSL---RTFMGH--SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------GGTAQMRFQ-PHLGR 774 (915)
Q Consensus 707 ~~~~~~~---~~~~~h--~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~------~~~~~i~~s-p~~~~ 774 (915)
+...... .....+ ......+.+.+... .+++++.|+.|++|++.......... ....+..+. .+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
T d1yfqa_ 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG 208 (342)
T ss_dssp HHHTTBCEEEEESCSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred CCCCCCEEEECCCCCCCCCCEEEEEEEECCCC-CEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCE
T ss_conf 34443302300024300120000010001687-02465179847887605676341112102542210146763699987
Q ss_pred EEEEECCCEEEEEECCCCEE---------EE------EECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCE
Q ss_conf 99998499299998899608---------99------951799984799992999999999499-099998788998613
Q 002495 775 YLAAAAENVVSILDAETQAC---------RL------SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 838 (915)
Q Consensus 775 ll~~~~dg~I~i~D~~t~~~---------~~------~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~ 838 (915)
+++++.|+.+.+|+...... .. ....|...|++++|+|++.+|++++.| .|++||+.++ ++
T Consensus 209 ~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~---~~ 285 (342)
T d1yfqa_ 209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KK 285 (342)
T ss_dssp EEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EE
T ss_pred EEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCC---CE
T ss_conf 886548995999980598640111235125655531477762354315996698447999879998999999989---49
Q ss_pred EEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 8883149985399999179998999986980999988999
Q 002495 839 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 878 (915)
Q Consensus 839 i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~ 878 (915)
+..+.. ......++|++++.++++++.|+.+++|.....
T Consensus 286 l~~~~~-~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~ 324 (342)
T d1yfqa_ 286 IKNFAK-FNEDSVVKIACSDNILCLATSDDTFKTNAAIDQ 324 (342)
T ss_dssp EEECCC-CSSSEEEEEEECSSEEEEEEECTHHHHCSSSCT
T ss_pred EEEECC-CCCCEEEEEEECCCEEEEEECCCCEEEEEEECC
T ss_conf 887058-999879999947999999991992788301278
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.1e-21 Score=189.89 Aligned_cols=213 Identities=18% Similarity=0.225 Sum_probs=159.8
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEE----------CCCCCCEEEEEECCC-----CCEEEEEECCCEEEEEECCCCCC
Q ss_conf 999999978991999978998234673----------247986789999899-----99899983898099997789995
Q 002495 647 GKLLATGGHDKKAVLWHTDTLKSKTNL----------EEHSSLITDVRFSPS-----MPRLATSSFDKTVRVWDADNPGY 711 (915)
Q Consensus 647 g~~Latgs~Dg~I~iwd~~~~~~~~~l----------~~h~~~V~~i~fspd-----g~~Lasgs~Dg~I~iwdl~~~~~ 711 (915)
+.++++++.||.|++|++........+ ..+...+..++|.++ +.++++++.||.|++|++.....
T Consensus 79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~ 158 (393)
T d1sq9a_ 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 158 (393)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred CCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCC
T ss_conf 76899994899199998228982056512456324311578966899984478865421799983898199987404775
Q ss_pred -----------------EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---------CCCEE
Q ss_conf -----------------4788425788758999748999199998189819999947990578862---------68107
Q 002495 712 -----------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQ 765 (915)
Q Consensus 712 -----------------~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~---------~~~~~ 765 (915)
.......+...+.+++|+|++ +|++|+.|+.|++||+.+++.+..+. ..+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~ 236 (393)
T d1sq9a_ 159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236 (393)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred CCCEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCC--EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 34102331032000145100025789867899978999--8999938982999860233211000011111242563877
Q ss_pred EEEECCCCEEEEEECCC---EEEEEECCCCEEEEEEC-------------CCCCCEEEEEECCCCCEEEEEECC-EEEEE
Q ss_conf 99913999899998499---29999889960899951-------------799984799992999999999499-09999
Q 002495 766 MRFQPHLGRYLAAAAEN---VVSILDAETQACRLSLQ-------------GHTKPIDSVCWDPSGELLASVSED-SVRVW 828 (915)
Q Consensus 766 i~~sp~~~~ll~~~~dg---~I~i~D~~t~~~~~~l~-------------~h~~~V~si~~spdg~~las~s~d-~I~iw 828 (915)
++|+|++..+++++.|+ .|++||++++.++..+. +|...|++++|+|++++|++++.| .|++|
T Consensus 237 l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW 316 (393)
T d1sq9a_ 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316 (393)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEE
T ss_conf 00466532011242898842100103532134443115666643102320235866600138988806987799989999
Q ss_pred ECCCCCCCCEEEEECCCCCCEE----EEEEECCCCEEEEE
Q ss_conf 8788998613888314998539----99991799989999
Q 002495 829 TVGSGSEGECVHELSCNGNKFH----SCVFHPTYPSLLVI 864 (915)
Q Consensus 829 dl~s~~~~~~i~~~~~~~~~i~----~i~~spdg~~lisg 864 (915)
|+.++ .++..+.+|...|. .+.|++++..++++
T Consensus 317 d~~~g---~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 317 DVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp ETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred ECCCC---CEEEEECCCCCCCCCCCCEEEECCCCCEEEEC
T ss_conf 99999---79999988687613773489999999999983
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=1.9e-20 Score=179.54 Aligned_cols=290 Identities=12% Similarity=0.063 Sum_probs=199.9
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE-----CCCCCCEEEEEECCCCCEEEEE-EC
Q ss_conf 30244574159998599999389999999978991999978998234673-----2479867899998999989998-38
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-----EEHSSLITDVRFSPSMPRLATS-SF 697 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l-----~~h~~~V~~i~fspdg~~Lasg-s~ 697 (915)
+.+.+.++..|. .+..++|+|||++|++++.|++|++||+.+++..... .+|...+.++.|+|||++|+++ ..
T Consensus 51 t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~ 129 (426)
T d1hzua2 51 SKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW 129 (426)
T ss_dssp TCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred CCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECC
T ss_conf 995999996899-8038999899999999958998899975688604899986788876458850026889879996358
Q ss_pred CCEEEEEECCCCCCEEEEECCCCCCE-----------EEEEECCCCCEEEEEEECCCCEEEEECCCCEEEE--EE--ECC
Q ss_conf 98099997789995478842578875-----------8999748999199998189819999947990578--86--268
Q 002495 698 DKTVRVWDADNPGYSLRTFMGHSASV-----------MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VF--KGG 762 (915)
Q Consensus 698 Dg~I~iwdl~~~~~~~~~~~~h~~~V-----------~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~--~~--~~~ 762 (915)
++.+++||... ..+...+..+...+ ..+.+++++..++++....+.+.+++........ .+ ...
T Consensus 130 ~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 208 (426)
T d1hzua2 130 PPQFAIMDGET-LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF 208 (426)
T ss_dssp SSEEEEEETTT-CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSS
T ss_pred CCEEEEECCCC-CCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCC
T ss_conf 97699985776-41257862267773643642788503899878787888852789769999924665204577566775
Q ss_pred CEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEEEECCC--CCCEEEEEECCCCC--EEEE-EECC-EEEEEECCCCC-
Q ss_conf 107999139998999984-992999988996089995179--99847999929999--9999-9499-09999878899-
Q 002495 763 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGH--TKPIDSVCWDPSGE--LLAS-VSED-SVRVWTVGSGS- 834 (915)
Q Consensus 763 ~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h--~~~V~si~~spdg~--~las-~s~d-~I~iwdl~s~~- 834 (915)
...+.+++++.+++++.. +..+.+++..+++.+..+... ......+.+...+. ..+. ...+ .+.+|+.....
T Consensus 209 ~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~ 288 (426)
T d1hzua2 209 LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH 288 (426)
T ss_dssp EEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTC
T ss_pred CEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCC
T ss_conf 37613778886788642011000000025562788750587444342011006987745774157896598852256652
Q ss_pred ---CCCEEEEECCCCCCEEEEEEECCCCEEEEE-------ECCCEEEEEECCCCCEE-EE---------CCCCCCEEEEE
Q ss_conf ---861388831499853999991799989999-------86980999988999289-98---------15689869999
Q 002495 835 ---EGECVHELSCNGNKFHSCVFHPTYPSLLVI-------GCYQSLELWNMSENKTM-TL---------TAHEGLIAALA 894 (915)
Q Consensus 835 ---~~~~i~~~~~~~~~i~~i~~spdg~~lisg-------s~dg~I~iwd~~~~~~~-~~---------~~h~~~V~~ia 894 (915)
..++...+.+|...+..++|+|++.++++. ..+++|++||+.+++.. ++ ..+...|..++
T Consensus 289 ~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~ 368 (426)
T d1hzua2 289 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 368 (426)
T ss_dssp TTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEE
T ss_pred CCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEE
T ss_conf 03302586898668876367874899861888506798802288799998987876708950211025677885189879
Q ss_pred EECCCCEEEEE-----ECCCCEEECC
Q ss_conf 93799999999-----6698299909
Q 002495 895 VSTETGYVASA-----SHDKFVKLWK 915 (915)
Q Consensus 895 ~spdg~~Lasg-----s~Dg~I~IWd 915 (915)
|+|||++|+.. +.|+.|+|||
T Consensus 369 fSpDGk~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 369 YNKRGDEVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp ECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred ECCCCCEEEEEEECCCCCCCEEEEEE
T ss_conf 99999999999724888898299999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.91 E-value=2.1e-18 Score=162.66 Aligned_cols=247 Identities=14% Similarity=0.187 Sum_probs=186.9
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEE-ECCCEEEEE
Q ss_conf 4457415999859999938999999-99789919999789982346732479867899998999989998-389809999
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVW 704 (915)
Q Consensus 627 ~~~~l~~H~~~V~~iafspdg~~La-tgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~I~iw 704 (915)
.+.++.. ...+..++|+|||++|+ +++.++.|++||+.+++.+..+..+.. +..+.|++++..++++ ..++.+++|
T Consensus 24 ~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (301)
T d1l0qa2 24 VTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVI 101 (301)
T ss_dssp EEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEEEC-CCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 9999988-998369999289899999978999899999998941032000246-43110001111111111111001100
Q ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEECC-
Q ss_conf 778999547884257887589997489991999981898199999479905788626--81079991399989999849-
Q 002495 705 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE- 781 (915)
Q Consensus 705 dl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~d- 781 (915)
+..+ +.....+. +...+.++.|++++..+++++..++.+.+|+..+...+..+.. ....+.+.+++..++++..+
T Consensus 102 ~~~~-~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
T d1l0qa2 102 DTTS-NTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS 179 (301)
T ss_dssp ETTT-TEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred CCCC-CEEEEECC-CCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEECCCC
T ss_conf 1243-02432024-444423787605897155420111100110001463035315678842888604654013101211
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECC
Q ss_conf 929999889960899951799984799992999999999499----0999987889986138883149985399999179
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 857 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spd 857 (915)
+.+.+|+....+....+.. ...+..++|++++..++++..+ .|++||+.++ +.+..+.. ...+..++|+|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~---~~~~~~~~-~~~~~~va~spd 254 (301)
T d1l0qa2 180 MSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITARIPV-GPDPAGIAVTPD 254 (301)
T ss_dssp TEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEEEEEC-CSSEEEEEECTT
T ss_pred CCCCCCCCCCEEEEECCCC-CCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCC---EEEEEECC-CCCEEEEEEECC
T ss_conf 1111111110001110133-577503110111101111002100002323656998---19999848-998779999189
Q ss_pred CCEEE-EEECCCEEEEEECCCCCEEE
Q ss_conf 99899-99869809999889992899
Q 002495 858 YPSLL-VIGCYQSLELWNMSENKTMT 882 (915)
Q Consensus 858 g~~li-sgs~dg~I~iwd~~~~~~~~ 882 (915)
+++++ +++.++.|++||+.+++++.
T Consensus 255 g~~l~va~~~~~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 255 GKKVYVALSFCNTVSVIDTATNTITA 280 (301)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 89999998999969999999995999
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=7.7e-20 Score=174.51 Aligned_cols=322 Identities=11% Similarity=0.045 Sum_probs=215.2
Q ss_pred CCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEE-ECCCCCCC----CCCCCCCCCCCCCCCC--CEEEEEEECCCCCEEE
Q ss_conf 799806847771166521000026887775344-10268999----8788886432356753--0244574159998599
Q 002495 568 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVES-FLSHDDTD----PRDAGGRGMDVSQGFS--FKEANSVRASTSKVIC 640 (915)
Q Consensus 568 ~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~-~~~~~~~~----~~~~~~~~~d~~~~~~--~~~~~~l~~H~~~V~~ 640 (915)
++.++|||+.++++...+.. + ..+.. -+++|+.. ..+...+.||+..+.. ..++....+|.+.+.+
T Consensus 41 dg~v~vwD~~t~~~~~~l~~----g---~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s 113 (426)
T d1hzua2 41 AGQIALVDGDSKKIVKVIDT----G---YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS 113 (426)
T ss_dssp TTEEEEEETTTCSEEEEEEC----C---SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEEC----C---CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEE
T ss_conf 99799999999959999968----9---9803899989999999995899889997568860489998678887645885
Q ss_pred EEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCC-----------CEEEEEECCCCCEEEEEEC-CCEEEEEECC
Q ss_conf 9993899999999-7899199997899823467324798-----------6789999899998999838-9809999778
Q 002495 641 CHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSS-----------LITDVRFSPSMPRLATSSF-DKTVRVWDAD 707 (915)
Q Consensus 641 iafspdg~~Latg-s~Dg~I~iwd~~~~~~~~~l~~h~~-----------~V~~i~fspdg~~Lasgs~-Dg~I~iwdl~ 707 (915)
++|+|||++|+++ ..++.+++||..++.++..+..+.. ....+.+++++..++.... .+.+.+++..
T Consensus 114 ~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~ 193 (426)
T d1hzua2 114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 193 (426)
T ss_dssp CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS
T ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf 00268898799963589769998577641257862267773643642788503899878787888852789769999924
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC-----CEEEEEECCCC-EEEEEE--
Q ss_conf 9995478842578875899974899919999818981999994799057886268-----10799913999-899998--
Q 002495 708 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPHLG-RYLAAA-- 779 (915)
Q Consensus 708 ~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~-----~~~i~~sp~~~-~ll~~~-- 779 (915)
...........+...+..+.|.|++.+++++...+..+.+|+..+++.+..+... .....+..... .+.+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (426)
T d1hzua2 194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273 (426)
T ss_dssp SSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT
T ss_pred CCCCEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCC
T ss_conf 66520457756677537613778886788642011000000025562788750587444342011006987745774157
Q ss_pred CCCEEEEEECCC-------CEEEEEECCCCCCEEEEEECCCCCEEEEE-------ECC-EEEEEECCCCCCCCEEEE---
Q ss_conf 499299998899-------60899951799984799992999999999-------499-099998788998613888---
Q 002495 780 AENVVSILDAET-------QACRLSLQGHTKPIDSVCWDPSGELLASV-------SED-SVRVWTVGSGSEGECVHE--- 841 (915)
Q Consensus 780 ~dg~I~i~D~~t-------~~~~~~l~~h~~~V~si~~spdg~~las~-------s~d-~I~iwdl~s~~~~~~i~~--- 841 (915)
.++.+.+|+... .+...++.+|...+..++|+|++++|++. ..+ +|+|||+.+++....+..
T Consensus 274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~ 353 (426)
T d1hzua2 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 353 (426)
T ss_dssp TTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred CCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCH
T ss_conf 89659885225665203302586898668876367874899861888506798802288799998987876708950211
Q ss_pred ---ECCCCCCEEEEEEECCCCEEEEEE-----CCCEEEEEECCCCCEEE-ECCCCCCEEEEEEECCCCEE
Q ss_conf ---314998539999917999899998-----69809999889992899-81568986999993799999
Q 002495 842 ---LSCNGNKFHSCVFHPTYPSLLVIG-----CYQSLELWNMSENKTMT-LTAHEGLIAALAVSTETGYV 902 (915)
Q Consensus 842 ---~~~~~~~i~~i~~spdg~~lisgs-----~dg~I~iwd~~~~~~~~-~~~h~~~V~~ia~spdg~~L 902 (915)
+..+...+..++|+|||+++++.+ .++.|+|||..+.++.. +.++. .++|+|+|.
T Consensus 354 ~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 354 WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp HHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred HCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCC------CCCCCCEEE
T ss_conf 0256778851898799999999999972488889829999999873899987898------419995575
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=2.2e-20 Score=178.96 Aligned_cols=288 Identities=11% Similarity=0.038 Sum_probs=195.0
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE--EEE---CCCCCCEEEEEECCCCCEE-EEEEC
Q ss_conf 30244574159998599999389999999978991999978998234--673---2479867899998999989-99838
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNL---EEHSSLITDVRFSPSMPRL-ATSSF 697 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~--~~l---~~h~~~V~~i~fspdg~~L-asgs~ 697 (915)
+.+.+..+..|. .+..++|+|||++|++++.|++|++||+.+.+.. ..+ ..|...+.+..|+|||++| ++++.
T Consensus 51 t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~ 129 (432)
T d1qksa2 51 TYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW 129 (432)
T ss_dssp TCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred CCCEEEEEECCC-CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCC
T ss_conf 983999973799-7137998899999999828999789981089812889984488987769843218888889998178
Q ss_pred CCEEEEEECCCCCCEEEEECC-----------CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE--EE--CC
Q ss_conf 980999977899954788425-----------7887589997489991999981898199999479905788--62--68
Q 002495 698 DKTVRVWDADNPGYSLRTFMG-----------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FK--GG 762 (915)
Q Consensus 698 Dg~I~iwdl~~~~~~~~~~~~-----------h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~--~~--~~ 762 (915)
+++|++||..+ +..+..+.. +......+.+++++..++++...++.|.+|+..+.+.... +. ..
T Consensus 130 ~~~v~i~d~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~ 208 (432)
T d1qksa2 130 PPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 208 (432)
T ss_dssp TTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred CCEEEEEECCC-CCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCC
T ss_conf 98279990765-54225402477643522016888505899878999899998168829999843787522799833675
Q ss_pred CEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEEEECC-----CCCCEEEEEECCCCCEEEEEEC-C-EEEEEECCCCC
Q ss_conf 107999139998999984-99299998899608999517-----9998479999299999999949-9-09999878899
Q 002495 763 TAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-----HTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGS 834 (915)
Q Consensus 763 ~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~-----h~~~V~si~~spdg~~las~s~-d-~I~iwdl~s~~ 834 (915)
...+.|+|++.++++++. ++.+.++|.++.+.+..+.. |........+...+...++... + .|.+|......
T Consensus 209 ~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~ 288 (432)
T d1qksa2 209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG 288 (432)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred CCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCC
T ss_conf 42653889887999951666367776144526888721486224567664101489883102135688358762456655
Q ss_pred C----CCEEEEECCCCCCEEEEEE------------------------ECCCCEEEEEECCCEEEEEECCCCCEEEECCC
Q ss_conf 8----6138883149985399999------------------------17999899998698099998899928998156
Q 002495 835 E----GECVHELSCNGNKFHSCVF------------------------HPTYPSLLVIGCYQSLELWNMSENKTMTLTAH 886 (915)
Q Consensus 835 ~----~~~i~~~~~~~~~i~~i~~------------------------spdg~~lisgs~dg~I~iwd~~~~~~~~~~~h 886 (915)
. .+....+..+......+.. .|++..+++++.|+.+++|++.++. .+..|
T Consensus 289 ~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~--~l~~~ 366 (432)
T d1qksa2 289 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA--GITEG 366 (432)
T ss_dssp CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH--TCCSS
T ss_pred CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEEEEEEEECHHHCCCCCCCCEEECCCCCCC--CCCCC
T ss_conf 5465657779988689976888726886410211267888770359999962461045567844863343444--45789
Q ss_pred CCCEEEEEEECCCCEEEEEE-----CCCCEEECC
Q ss_conf 89869999937999999996-----698299909
Q 002495 887 EGLIAALAVSTETGYVASAS-----HDKFVKLWK 915 (915)
Q Consensus 887 ~~~V~~ia~spdg~~Lasgs-----~Dg~I~IWd 915 (915)
...|.+++|+|||++|+.+. .+|.|.|||
T Consensus 367 ~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 367 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEE
T ss_conf 9868976798999999999704888888689999
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=7.8e-20 Score=174.44 Aligned_cols=229 Identities=11% Similarity=0.157 Sum_probs=179.8
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 41599985999993899999999789919999789982346732479867899998999989998389809999778999
Q 002495 631 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 710 (915)
Q Consensus 631 l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~ 710 (915)
.++|...|.+++|+++. .+++++.|++|++|++...+ ....+.++.+.+++..++++ .++.+.+|+..+ +
T Consensus 42 ~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~ 111 (287)
T d1pgua2 42 HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFT-G 111 (287)
T ss_dssp ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTT-C
T ss_pred CCCCCCCEEEEEECCCC-EEEEEEECCCCCCCCCCCCC-------CCCCEEEEEECCCCCEEEEE-ECCCCEEEECCC-E
T ss_conf 88877878999965997-28988610122211111111-------12210146641678569996-033210000110-0
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE----CCCEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 54788425788758999748999199998189819999947990578862----68107999139998999984992999
Q 002495 711 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSI 786 (915)
Q Consensus 711 ~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~----~~~~~i~~sp~~~~ll~~~~dg~I~i 786 (915)
..+..+.. ...+. ++++++..+++++..++.|++|++........+. ..+.+++|++++.++++++.++.|++
T Consensus 112 ~~~~~~~~-~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 188 (287)
T d1pgua2 112 DIIKSVRL-NSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL 188 (287)
T ss_dssp CEEEEEEC-SSCEE--EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEECCC-CCEEE--EEECCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 35431012-22035--6521475111000221000210001221000121024785369995167652110111111000
Q ss_pred EECCCCEEEEE-ECCCCCCEEEEEECCC----------CCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEE
Q ss_conf 98899608999-5179998479999299----------9999999499-0999987889986138883149985399999
Q 002495 787 LDAETQACRLS-LQGHTKPIDSVCWDPS----------GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 854 (915)
Q Consensus 787 ~D~~t~~~~~~-l~~h~~~V~si~~spd----------g~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~ 854 (915)
||..++..... +..|...|.+++|+|. +.+|++++.| .|++||++.+ ...+..+.+|...|.++.|
T Consensus 189 ~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~--~~~~~~~~~h~~~V~~v~~ 266 (287)
T d1pgua2 189 YDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP--MKIIKALNAHKDGVNNLLW 266 (287)
T ss_dssp EETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT--TCCEEETTSSTTCEEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCC--CEEEEEECCCCCCEEEEEE
T ss_conf 00023321100011111111000001365410012678870276649995999888999--7589992787898589999
Q ss_pred ECCCCEEEEEECCCEEEEEEC
Q ss_conf 179998999986980999988
Q 002495 855 HPTYPSLLVIGCYQSLELWNM 875 (915)
Q Consensus 855 spdg~~lisgs~dg~I~iwd~ 875 (915)
++++ .|++++.|+.|++|++
T Consensus 267 ~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 267 ETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EETT-EEEEEETTSCEEEEEE
T ss_pred CCCC-EEEEEECCCEEEEEEE
T ss_conf 8999-8999979992999997
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=1.7e-16 Score=146.92 Aligned_cols=258 Identities=12% Similarity=0.133 Sum_probs=209.1
Q ss_pred EEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEE
Q ss_conf 99997899199997899823467324798678999989999899-98389809999778999547884257887589997
Q 002495 650 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 728 (915)
Q Consensus 650 Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~La-sgs~Dg~I~iwdl~~~~~~~~~~~~h~~~V~si~f 728 (915)
+++++.|++|.|||+++++.+.++... ..+..++|+||+++|+ +++.++.|++||+.+ ...+..+..+. .+..+.|
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t-~~~~~~~~~~~-~~~~~~~ 81 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPAGS-SPQGVAV 81 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEECSS-SEEEEEE
T ss_pred EEEECCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCC-CCEEEEEECCC-CCCCCCC
T ss_conf 999789998999999999599999889-98369999289899999978999899999998-94103200024-6431100
Q ss_pred CCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf 489991999981898199999479905788626--8107999139998999984-9929999889960899951799984
Q 002495 729 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTKPI 805 (915)
Q Consensus 729 sp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~~l~~h~~~V 805 (915)
++++..+++++..++.+++|+..+++....+.. ....+.+++++..++++.. +..+.+|+..+......+..+ ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 160 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP 160 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCCC-CCC
T ss_conf 0111111111111100110012430243202444442378760589715542011110011000146303531567-884
Q ss_pred EEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECC---CEEEEEECCCCCE
Q ss_conf 799992999999999499--09999878899861388831499853999991799989999869---8099998899928
Q 002495 806 DSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 880 (915)
Q Consensus 806 ~si~~spdg~~las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs~d---g~I~iwd~~~~~~ 880 (915)
.++.+++++..++++..+ .+.+|+.... ........ ......+.|++++..++++..+ +.|++||..+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred EEEEEECCCCCEEEECCCCCCCCCCCCCCE---EEEECCCC-CCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEE
T ss_conf 288860465401310121111111111100---01110133-57750311011110111100210000232365699819
Q ss_pred EEECCCCCCEEEEEEECCCCEE-EEEECCCCEEECC
Q ss_conf 9981568986999993799999-9996698299909
Q 002495 881 MTLTAHEGLIAALAVSTETGYV-ASASHDKFVKLWK 915 (915)
Q Consensus 881 ~~~~~h~~~V~~ia~spdg~~L-asgs~Dg~I~IWd 915 (915)
+....+...+.+++|+||+++| ++++.|+.|++||
T Consensus 237 ~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 237 TARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 999848998779999189899999989999699999
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=2.5e-17 Score=153.78 Aligned_cols=257 Identities=10% Similarity=0.035 Sum_probs=164.7
Q ss_pred EEEEEECCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCEEEEECC-----------CCCCEEEEEECCCCCEEE-
Q ss_conf 445741599985999993899999-9997899199997899823467324-----------798678999989999899-
Q 002495 627 EANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEE-----------HSSLITDVRFSPSMPRLA- 693 (915)
Q Consensus 627 ~~~~l~~H~~~V~~iafspdg~~L-atgs~Dg~I~iwd~~~~~~~~~l~~-----------h~~~V~~i~fspdg~~La- 693 (915)
++....+|.+.+.+.+|+|||++| +++..++.|+|||..+++.+..+.. +......+.+++++.+++
T Consensus 100 ~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~v 179 (432)
T d1qksa2 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179 (432)
T ss_dssp EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred EEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEE
T ss_conf 98448898776984321888888999817898279990765542254024776435220168885058998789998999
Q ss_pred EEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC-------EEE
Q ss_conf 9838980999977899954788425788758999748999199998189819999947990578862681-------079
Q 002495 694 TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT-------AQM 766 (915)
Q Consensus 694 sgs~Dg~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~-------~~i 766 (915)
+...++.|.+|+..+..........+...+.++.|+|++.++++++..++.|.++|..+.+.+..+..+. ...
T Consensus 180 s~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~ 259 (432)
T d1qksa2 180 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN 259 (432)
T ss_dssp EETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred EECCCCEEEEEECCCCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 98168829999843787522799833675426538898879999516663677761445268887214862245676641
Q ss_pred EEECCCCEEEEEEC--CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCC---------
Q ss_conf 99139998999984--9929999889960899951799984799992999999999499-09999878899---------
Q 002495 767 RFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS--------- 834 (915)
Q Consensus 767 ~~sp~~~~ll~~~~--dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~--------- 834 (915)
...+..+.+.+... ++.|.+|+..... ...|...+....+.+++..+++++.+ ..++|+.....
T Consensus 260 ~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv 335 (432)
T d1qksa2 260 FVHPTFGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSV 335 (432)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCE
T ss_pred EECCCCCCEECCCCCCCCEEEECCCCCCC----CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEEEE
T ss_conf 01489883102135688358762456655----54656577799886899768887268864102112678887703599
Q ss_pred ------------CCCEEE--------EECCCCCCEEEEEEECCCCEEEEEEC-----CCEEEEEECCCCCEEEECCCC
Q ss_conf ------------861388--------83149985399999179998999986-----980999988999289981568
Q 002495 835 ------------EGECVH--------ELSCNGNKFHSCVFHPTYPSLLVIGC-----YQSLELWNMSENKTMTLTAHE 887 (915)
Q Consensus 835 ------------~~~~i~--------~~~~~~~~i~~i~~spdg~~lisgs~-----dg~I~iwd~~~~~~~~~~~h~ 887 (915)
..+.++ .+..+...+..++|+|||++++++.. ++.|.|||..+.++.......
T Consensus 336 ~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 336 AVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp EEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEEECHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECCC
T ss_conf 999624610455678448633434444578998689767989999999997048888886899999995588684688
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=8.5e-18 Score=157.58 Aligned_cols=237 Identities=12% Similarity=0.101 Sum_probs=135.1
Q ss_pred CCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEECCCCC-----CEEEEEECCCCCEEEEEE------------
Q ss_conf 99859999938999999-997899199997899823467324798-----678999989999899983------------
Q 002495 635 TSKVICCHFSSDGKLLA-TGGHDKKAVLWHTDTLKSKTNLEEHSS-----LITDVRFSPSMPRLATSS------------ 696 (915)
Q Consensus 635 ~~~V~~iafspdg~~La-tgs~Dg~I~iwd~~~~~~~~~l~~h~~-----~V~~i~fspdg~~Lasgs------------ 696 (915)
...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+.. .+..++|+++++++++++
T Consensus 33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T d1pbyb_ 33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCC
T ss_conf 99823799999989999997899949999999992988872477731254025489868775799950477620342034
Q ss_pred CCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC--EEEEEECCC--
Q ss_conf 8980999977899954788425788758999748999199998189819999947990578862681--079991399--
Q 002495 697 FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT--AQMRFQPHL-- 772 (915)
Q Consensus 697 ~Dg~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~--~~i~~sp~~-- 772 (915)
.+..+.+||..+ +.....+. +...+.+++|++++..++ +++ +.+.+||..+++....+.... ....+.+++
T Consensus 113 ~~~~~~~~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~-~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (337)
T d1pbyb_ 113 QPTRVALYDAET-LSRRKAFE-APRQITMLAWARDGSKLY-GLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA 187 (337)
T ss_dssp CCCEEEEEETTT-TEEEEEEE-CCSSCCCEEECTTSSCEE-EES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCC
T ss_pred CCCCEEECCCCC-CEEEEECC-CCCCCEEEEECCCCCEEE-EEC--CCCCEEEEECCCEEEEEECCCCCCCCEECCCCCE
T ss_conf 555212035667-75988414-568721899868888899-971--7750566303727888614775433113577631
Q ss_pred --------CE--------------EEEEECCCEEEEEECCCCEEEE-EECCCCCCEEEEEECCCCCEEEEEECCEEEEEE
Q ss_conf --------98--------------9999849929999889960899-951799984799992999999999499099998
Q 002495 773 --------GR--------------YLAAAAENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSEDSVRVWT 829 (915)
Q Consensus 773 --------~~--------------ll~~~~dg~I~i~D~~t~~~~~-~l~~h~~~V~si~~spdg~~las~s~d~I~iwd 829 (915)
.. ......++.+.+||..++.... .+..+...+.++.+++++.++++.. ..|++||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d 266 (337)
T d1pbyb_ 188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-NVLESFD 266 (337)
T ss_dssp CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-SEEEEEE
T ss_pred EECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEECC-CCEEEEE
T ss_conf 401466531246632444103660454036761799986888588898328875058887426613999735-5289998
Q ss_pred CCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 7889986138883149985399999179998999986980999988999289
Q 002495 830 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 881 (915)
Q Consensus 830 l~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~ 881 (915)
+.++ +.+..+. +...+.+++|+|+++++++++.++.|++||..+.+.+
T Consensus 267 ~~~~---~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 267 LEKN---ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp TTTT---EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCC---CEEEEEC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
T ss_conf 9889---6999974-8998899999789999999949992999999987698
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.85 E-value=3.2e-19 Score=169.41 Aligned_cols=315 Identities=12% Similarity=0.043 Sum_probs=212.3
Q ss_pred CCEEEEEC-CCCCEEC--CCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEE-CCCCCCCCC----C--CCCCCCCCCCC
Q ss_conf 75089970-8981102--7998068477711665210000268877753441-026899987----8--88864323567
Q 002495 553 KPLMMFGT-DGAGTLT--SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDTDPR----D--AGGRGMDVSQG 622 (915)
Q Consensus 553 ~~~~~fs~-dg~~~~~--~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~~~~~~~----~--~~~~~~d~~~~ 622 (915)
+-..-||| ||+..+. .+.+.+||+..+..+.. .+...+... +++|+.... + ...+.|+...+
T Consensus 5 ~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~--------~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~ 76 (360)
T d1k32a3 5 KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--------PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG 76 (360)
T ss_dssp GGEEEEEECGGGCEEEEETTEEEEECTTSSBEEEC--------SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC
T ss_pred HHCCCCCCCCCCEEEEEECCEEEEEECCCCCEEEC--------CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 10051468899999999899699998999948991--------6999888899989999999999289989999989999
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE------
Q ss_conf 53024457415999859999938999999997899199997899823467324798678999989999899983------
Q 002495 623 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------ 696 (915)
Q Consensus 623 ~~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs------ 696 (915)
....+..|...|.+++|+||+++|++++.++.+++|++.+.+....+..|...+.+++|+|++++|+.+.
T Consensus 77 ----~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~ 152 (360)
T d1k32a3 77 ----KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 152 (360)
T ss_dssp ----CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred ----CEEEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCC
T ss_conf ----4887508971277412114543210001111100000122210000001355202301213225665212331211
Q ss_pred ----CCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE-------EE---CC
Q ss_conf ----89809999778999547884257887589997489991999981898199999479905788-------62---68
Q 002495 697 ----FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-------FK---GG 762 (915)
Q Consensus 697 ----~Dg~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~-------~~---~~ 762 (915)
.++.+++|++.+ + ....+..+...+.++.|+|++..+ ++++.++.+++|+......... +. ..
T Consensus 153 ~~~~~~~~~~v~d~~~-~-~~~~~~~~~~~~~~~~~spdg~~l-~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 229 (360)
T d1k32a3 153 TDGYVMQAIHVYDMEG-R-KIFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 229 (360)
T ss_dssp TCSCCEEEEEEEETTT-T-EEEECSCSSSBEEEEEECTTSCEE-EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred EEECCCCCEEEECCCC-C-CEEEECCCCCCCCCCCCCCCCCEE-EEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCC
T ss_conf 0002565426630455-7-135303543221100125779999-999599855753335440232036411798524696
Q ss_pred CEEEEEECCCCEEEEEECC-----CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCC---EEEEEECC-EEEEEECCCC
Q ss_conf 1079991399989999849-----9299998899608999517999847999929999---99999499-0999987889
Q 002495 763 TAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE---LLASVSED-SVRVWTVGSG 833 (915)
Q Consensus 763 ~~~i~~sp~~~~ll~~~~d-----g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~---~las~s~d-~I~iwdl~s~ 833 (915)
...+.+++++..+..+..+ ..+..++...+... .+..+...+..+.+...+. ++++++.+ .|++||+.++
T Consensus 230 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 308 (360)
T d1k32a3 230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR-MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308 (360)
T ss_dssp CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE-EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred CCCCEECCCCCCCCCCCEEECCCCCCEEECCCCCCCEE-EEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 01206877767155311365266540010124767526-75413898569999735997069996489987999979997
Q ss_pred CCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCE
Q ss_conf 986138883149985399999179998999986980999988999289-981568986
Q 002495 834 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLI 890 (915)
Q Consensus 834 ~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~-~~~~h~~~V 890 (915)
+ . .. +...+..++|+||+++|++++.||.|++||+..++.. ++..+..++
T Consensus 309 ~---~-~~---~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 309 K---V-TE---VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp C---E-EE---EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred E---E-EE---ECCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCC
T ss_conf 4---9-88---64886879999989899999789949999999998545998416225
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=4.4e-18 Score=159.99 Aligned_cols=267 Identities=9% Similarity=0.030 Sum_probs=148.8
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC-CCCCEEEEEECCCCCEEEE-EECCCEEEEEECCCCCCEEEEECC
Q ss_conf 99938999999997899199997899823467324-7986789999899998999-838980999977899954788425
Q 002495 641 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLAT-SSFDKTVRVWDADNPGYSLRTFMG 718 (915)
Q Consensus 641 iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~-h~~~V~~i~fspdg~~Las-gs~Dg~I~iwdl~~~~~~~~~~~~ 718 (915)
++|++++++|++++.++.|.|||+++.+.+.++.. +...+.+++|+||++++++ ++.++.|++||+.+ ++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEES
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCC-CEEEEEECC
T ss_conf 5588999699998699979999999998999999489997045999789899999978999399996756-713123103
Q ss_pred CC------CCEEEEEECCCCCEEEEEE-----------ECCCCEEEEECCCCEEEEEEE-----CCCEEEEEECCCCEEE
Q ss_conf 78------8758999748999199998-----------189819999947990578862-----6810799913999899
Q 002495 719 HS------ASVMSLDFHPNKDDLICSC-----------DGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYL 776 (915)
Q Consensus 719 h~------~~V~si~fsp~~~~ll~sg-----------s~Dg~I~iwdi~~~~~~~~~~-----~~~~~i~~sp~~~~ll 776 (915)
.. ..+..++|+|++..++++. ..+..+.+|+..+++....+. .....+.+.++ +.++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 159 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD-GSLY 159 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT-SCEE
T ss_pred CCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCC-CEEE
T ss_conf 654345477417999905888899970577521565146762489985256326568873102474399995278-7899
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEE--------------------------EEEECC-EEEEEE
Q ss_conf 99849929999889960899951799984799992999999--------------------------999499-099998
Q 002495 777 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL--------------------------ASVSED-SVRVWT 829 (915)
Q Consensus 777 ~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l--------------------------as~s~d-~I~iwd 829 (915)
+. +..+.+|+..+++.+..+..+.. ...+.++|++..+ ++...+ .+.+|+
T Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 160 VA--GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp EE--SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EE--CCCCEEEECCCCCEEEEEECCCC-CCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf 84--79626998069978999964898-6623771255289998649981676512311126732575404783499997
Q ss_pred CCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 78899861388831499853999991799989999869809999889992899815689869999937999999996698
Q 002495 830 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 909 (915)
Q Consensus 830 l~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~~~~~h~~~V~~ia~spdg~~Lasgs~Dg 909 (915)
+.++. ........+...+..+.+++++.+++.... +.|++||..+++.+....+...+.+++|+||+++|++++.|+
T Consensus 237 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~ 313 (346)
T d1jmxb_ 237 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313 (346)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred CCCCC--EEEEEEECCCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 77883--687876315660688897179978999429-838999899993999974999778999968999999994899
Q ss_pred CEEECC
Q ss_conf 299909
Q 002495 910 FVKLWK 915 (915)
Q Consensus 910 ~I~IWd 915 (915)
.|++||
T Consensus 314 ~v~v~D 319 (346)
T d1jmxb_ 314 DLAVFN 319 (346)
T ss_dssp EEEEEE
T ss_pred CEEEEE
T ss_conf 299999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.82 E-value=2.8e-15 Score=136.70 Aligned_cols=262 Identities=11% Similarity=0.036 Sum_probs=177.7
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCCCE-------EEEEECCC
Q ss_conf 24457415999859999938999999997----------89919999789982346732479867-------89999899
Q 002495 626 KEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSSLI-------TDVRFSPS 688 (915)
Q Consensus 626 ~~~~~l~~H~~~V~~iafspdg~~Latgs----------~Dg~I~iwd~~~~~~~~~l~~h~~~V-------~~i~fspd 688 (915)
+.+..+..+... .++|+|||++|++++ .++.|.+||..+++.+..+..+.... ..+.|+++
T Consensus 58 ~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 135 (373)
T d2madh_ 58 SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN 135 (373)
T ss_pred CEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEEC
T ss_conf 799999579886--079868999899996057753212453189999777893888972688513685168970899858
Q ss_pred CCEEEEEEC--CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC---
Q ss_conf 998999838--980999977899954788425788758999748999199998189819999947990578862681---
Q 002495 689 MPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT--- 763 (915)
Q Consensus 689 g~~Lasgs~--Dg~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~--- 763 (915)
++.+++... ++.+.+|+... ..... +.....++.|++++..++++.+.|+.+.+|+....+.........
T Consensus 136 g~~~~v~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 210 (373)
T d2madh_ 136 NADLLFFQFAAGPAVGLVVQGG-SSDDQ----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA 210 (373)
T ss_pred CCCEEEEEECCCCCEEEEECCC-CEEEE----EECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCC
T ss_conf 9937999986987467762368-72899----824520699962899199999479939999747742667886300366
Q ss_pred ----EEEE-EECCCCEEEEEECCCEEEEEECCCCEEEE--EECCCC----------CCEEEEEECCCCCEEE--------
Q ss_conf ----0799-91399989999849929999889960899--951799----------9847999929999999--------
Q 002495 764 ----AQMR-FQPHLGRYLAAAAENVVSILDAETQACRL--SLQGHT----------KPIDSVCWDPSGELLA-------- 818 (915)
Q Consensus 764 ----~~i~-~sp~~~~ll~~~~dg~I~i~D~~t~~~~~--~l~~h~----------~~V~si~~spdg~~la-------- 818 (915)
.... ....++.++....++.+.+|+........ .+..+. .....+++++++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 290 (373)
T d2madh_ 211 AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred CCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
T ss_conf 75304345887899429992589659999768990789776305647578664136741335771499759995488824
Q ss_pred --EEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCE--EEEEECCCEEEEEECCCCCEE-EECCCCCCEEE
Q ss_conf --99499-0999987889986138883149985399999179998--999986980999988999289-98156898699
Q 002495 819 --SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS--LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAA 892 (915)
Q Consensus 819 --s~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~--lisgs~dg~I~iwd~~~~~~~-~~~~h~~~V~~ 892 (915)
....+ .+.+||..++ +.+..+. +...+..+.|+||++. +++++.|+.|++||+.+++.+ .+..+......
T Consensus 291 ~~~~~~~~~v~~~d~~t~---~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~ 366 (373)
T d2madh_ 291 WKLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQV 366 (373)
T ss_pred EEEECCCCEEEEEECCCC---CEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCE
T ss_conf 786258986999989999---6989866-899825899998999899999679992999999999899998888989818
Q ss_pred EEEECC
Q ss_conf 999379
Q 002495 893 LAVSTE 898 (915)
Q Consensus 893 ia~spd 898 (915)
+++..+
T Consensus 367 l~~~~~ 372 (373)
T d2madh_ 367 LSVMNE 372 (373)
T ss_pred EEEECC
T ss_conf 998468
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=8.4e-15 Score=132.80 Aligned_cols=250 Identities=11% Similarity=0.134 Sum_probs=171.9
Q ss_pred ECCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCEEEEE---CCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEEC
Q ss_conf 159998599999389999999978-991999978998234673---247986789999899998999838-980999977
Q 002495 632 RASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNL---EEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDA 706 (915)
Q Consensus 632 ~~H~~~V~~iafspdg~~Latgs~-Dg~I~iwd~~~~~~~~~l---~~h~~~V~~i~fspdg~~Lasgs~-Dg~I~iwdl 706 (915)
..|.+.|.+|+|+|||++|++++. |+.|++|++........+ ..+...+..++|+||+++|++++. ++.|.+|+.
T Consensus 33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCEEEECC
T ss_conf 75799886899958979999997789969999996898707985301369985499995999887420568883022001
Q ss_pred CCCCC-EEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE-----E----CCCEEEEEECCCCEEE
Q ss_conf 89995-478842578875899974899919999818981999994799057886-----2----6810799913999899
Q 002495 707 DNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----K----GGTAQMRFQPHLGRYL 776 (915)
Q Consensus 707 ~~~~~-~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~-----~----~~~~~i~~sp~~~~ll 776 (915)
..... .......+...+.++.+++++..+++....+..|.+|+.......... . .....+.|++++..++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~ 192 (333)
T d1ri6a_ 113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 192 (333)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECCCEEEE
T ss_conf 11000000100377853149886301013102565542056897326874100100013340388752799960201478
Q ss_pred EEEC-CCEEEEEECCCC----EEEEEEC------CCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEEC
Q ss_conf 9984-992999988996----0899951------799984799992999999999499--09999878899861388831
Q 002495 777 AAAA-ENVVSILDAETQ----ACRLSLQ------GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELS 843 (915)
Q Consensus 777 ~~~~-dg~I~i~D~~t~----~~~~~l~------~h~~~V~si~~spdg~~las~s~d--~I~iwdl~s~~~~~~i~~~~ 843 (915)
.... .+...+++.... .....+. ........+++++++++++..... .+.+|++........+....
T Consensus 193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (333)
T d1ri6a_ 193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 272 (333)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred EECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEEEE
T ss_conf 62046672178851035552021002234306877655312689951567205504568827878873999789999996
Q ss_pred CCCCCEEEEEEECCCCEEEEEECC-CEEEEEE--CCCCCEE
Q ss_conf 499853999991799989999869-8099998--8999289
Q 002495 844 CNGNKFHSCVFHPTYPSLLVIGCY-QSLELWN--MSENKTM 881 (915)
Q Consensus 844 ~~~~~i~~i~~spdg~~lisgs~d-g~I~iwd--~~~~~~~ 881 (915)
.....+..++|+|++++|++++.+ +.|.+|+ ..++++.
T Consensus 273 ~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 273 PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEE
T ss_conf 78997628999079899999988999399999979999689
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.79 E-value=5.6e-14 Score=126.01 Aligned_cols=280 Identities=10% Similarity=0.030 Sum_probs=197.7
Q ss_pred EECCCCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE---------
Q ss_conf 415999859999938999999997-----899199997899823467324798678999989999899983---------
Q 002495 631 VRASTSKVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS--------- 696 (915)
Q Consensus 631 l~~H~~~V~~iafspdg~~Latgs-----~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs--------- 696 (915)
...+..++.+++++|||+.+++.. .++.|.+||..+++.+.++..+... .+.|+|||++|++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCC
T ss_conf 456789865630189997899973422578765999989999799999579886--079868999899996057753212
Q ss_pred -CCCEEEEEECCCCCCEEEEECCCCCCE-------EEEEECCCCCEEEEEE-ECCCCEEEEECCCCEEEEEEECCCEEEE
Q ss_conf -898099997789995478842578875-------8999748999199998-1898199999479905788626810799
Q 002495 697 -FDKTVRVWDADNPGYSLRTFMGHSASV-------MSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMR 767 (915)
Q Consensus 697 -~Dg~I~iwdl~~~~~~~~~~~~h~~~V-------~si~fsp~~~~ll~sg-s~Dg~I~iwdi~~~~~~~~~~~~~~~i~ 767 (915)
.++.|.+||..+ +..+..+..+.... ..+.|+++++.+++.. ..++.+.+|+....+....... ..++.
T Consensus 94 ~~~~~v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 171 (373)
T d2madh_ 94 KRTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS-PTCYH 171 (373)
T ss_pred CCCEEEEEEECCC-CCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEECC-CEEEE
T ss_conf 4531899997778-938889726885136851689708998589937999986987467762368728998245-20699
Q ss_pred EECCCCEE-EEEECCCEEEEEECCCCEEEEEECCCC------CCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEE
Q ss_conf 91399989-999849929999889960899951799------98479999299999999949909999878899861388
Q 002495 768 FQPHLGRY-LAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH 840 (915)
Q Consensus 768 ~sp~~~~l-l~~~~dg~I~i~D~~t~~~~~~l~~h~------~~V~si~~spdg~~las~s~d~I~iwdl~s~~~~~~i~ 840 (915)
+++++..+ ++...|+.+.+|+....+.......+. .....+.+.+++.+++....+.+.+|+...... ..+.
T Consensus 172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~ 250 (373)
T d2madh_ 172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKA 250 (373)
T ss_pred EECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCEE-EEEE
T ss_conf 962899199999479939999747742667886300366753043458878994299925896599997689907-8977
Q ss_pred EECCC----------CCCEEEEEEECCCCEEE----------EEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCC
Q ss_conf 83149----------98539999917999899----------99869809999889992899815689869999937999
Q 002495 841 ELSCN----------GNKFHSCVFHPTYPSLL----------VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG 900 (915)
Q Consensus 841 ~~~~~----------~~~i~~i~~spdg~~li----------sgs~dg~I~iwd~~~~~~~~~~~h~~~V~~ia~spdg~ 900 (915)
..... ......+.+++++..++ ....++.|.+||..+++.+....+...+.+++|+|||+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~ 330 (373)
T d2madh_ 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGG 330 (373)
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCC
T ss_conf 63056475786641367413357714997599954888247862589869999899996989866899825899998999
Q ss_pred E--EEEEECCCCEEECC
Q ss_conf 9--99996698299909
Q 002495 901 Y--VASASHDKFVKLWK 915 (915)
Q Consensus 901 ~--Lasgs~Dg~I~IWd 915 (915)
. +++++.|+.|++||
T Consensus 331 ~~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 331 PDLYALSAGTEVLHIYD 347 (373)
T ss_pred EEEEEEECCCCEEEEEE
T ss_conf 89999967999299999
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=5.1e-15 Score=134.61 Aligned_cols=260 Identities=11% Similarity=0.085 Sum_probs=197.7
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCC--CCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCCEEEEECCCC----
Q ss_conf 99999978991999978998234673247--98678999989999899-983898099997789995478842578----
Q 002495 648 KLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHS---- 720 (915)
Q Consensus 648 ~~Latgs~Dg~I~iwd~~~~~~~~~l~~h--~~~V~~i~fspdg~~La-sgs~Dg~I~iwdl~~~~~~~~~~~~h~---- 720 (915)
++|++++.|++|.|||+.+.+.+..+..+ ...+.+++|+||+++++ +++.++.|++||+.+ ++.+..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCC-CCEEEEEECCCCCCC
T ss_conf 6999976799899999999949999987788998237999999899999978999499999999-929888724777312
Q ss_pred -CCEEEEEECCCCCEEEEEEE-----------CCCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEECCCEEEE
Q ss_conf -87589997489991999981-----------898199999479905788626--8107999139998999984992999
Q 002495 721 -ASVMSLDFHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSI 786 (915)
Q Consensus 721 -~~V~si~fsp~~~~ll~sgs-----------~Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~dg~I~i 786 (915)
..+..++|+|++..++++.. .+..+.+||..++++...+.. ....+.|++++..+++++ +.+.+
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~ 158 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEC--CCCCE
T ss_conf 5402548986877579995047762034203455521203566775988414568721899868888899971--77505
Q ss_pred EECCCCEEEEEECCCCCCEEEEEECCCCCE------------------------EEEEECC-EEEEEECCCCCCCCEEEE
Q ss_conf 988996089995179998479999299999------------------------9999499-099998788998613888
Q 002495 787 LDAETQACRLSLQGHTKPIDSVCWDPSGEL------------------------LASVSED-SVRVWTVGSGSEGECVHE 841 (915)
Q Consensus 787 ~D~~t~~~~~~l~~h~~~V~si~~spdg~~------------------------las~s~d-~I~iwdl~s~~~~~~i~~ 841 (915)
||..+++....+..+... ....+.+++.. +.....+ .+.+|+..++. .....
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 235 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEE
T ss_pred EEEECCCEEEEEECCCCC-CCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCC--EEEEE
T ss_conf 663037278886147754-331135776314014665312466324441036604540367617999868885--88898
Q ss_pred ECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 31499853999991799989999869809999889992899815689869999937999999996698299909
Q 002495 842 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 842 ~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
+..+...+..+.+++++.++++. ++.|++||+.+++.+....+...+.+++|+|||++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred ECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 32887505888742661399973--5528999898896999974899889999978999999994999299999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=1.6e-15 Score=138.80 Aligned_cols=274 Identities=10% Similarity=0.045 Sum_probs=190.4
Q ss_pred EEECCCCCEEC---CCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE-
Q ss_conf 99708981102---79980684777116652100002688777534410268999878888643235675302445741-
Q 002495 557 MFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVR- 632 (915)
Q Consensus 557 ~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~- 632 (915)
.|+++++++++ ++.+.+||+++++ .+.++.
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~----------------------------------------------~~~t~~~ 36 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDT----------------------------------------------VYKSCVM 36 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTE----------------------------------------------EEEEEEC
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCC----------------------------------------------EEEEEEC
T ss_conf 588999699998699979999999998----------------------------------------------9999994
Q ss_pred CCCCCEEEEEECCCCCEEEE-EECCCCEEEEECCCCCEEEEECCCC------CCEEEEEECCCCCEEEEEE---------
Q ss_conf 59998599999389999999-9789919999789982346732479------8678999989999899983---------
Q 002495 633 ASTSKVICCHFSSDGKLLAT-GGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSS--------- 696 (915)
Q Consensus 633 ~H~~~V~~iafspdg~~Lat-gs~Dg~I~iwd~~~~~~~~~l~~h~------~~V~~i~fspdg~~Lasgs--------- 696 (915)
.|...+.+++|+|||+++++ +..++.|++||+.+++.+..+.... ..+..+.|++|++++++++
T Consensus 37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~ 116 (346)
T d1jmxb_ 37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116 (346)
T ss_dssp SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred CCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEE
T ss_conf 89997045999789899999978999399996756713123103654345477417999905888899970577521565
Q ss_pred ---CCCEEEEEECCCCCCEEEEEC--CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCC--EEEEEE
Q ss_conf ---898099997789995478842--5788758999748999199998189819999947990578862681--079991
Q 002495 697 ---FDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT--AQMRFQ 769 (915)
Q Consensus 697 ---~Dg~I~iwdl~~~~~~~~~~~--~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~--~~i~~s 769 (915)
.+..+.+|+..+ +.....+. .....+..+.+.+++ .++++ ++.+.+|++.+++.+..+..+. ..+.++
T Consensus 117 ~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (346)
T d1jmxb_ 117 YVVKPPRLEVFSTAD-GLEAKPVRTFPMPRQVYLMRAADDG-SLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSA 191 (346)
T ss_dssp EEECCCEEEEEEGGG-GGGBCCSEEEECCSSCCCEEECTTS-CEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCC
T ss_pred ECCCCCEEEEEECCC-CEEEEEEEEEECCCCEEEEEECCCC-EEEEE---CCCCEEEECCCCCEEEEEECCCCCCCEEEE
T ss_conf 146762489985256-3265688731024743999952787-89984---796269980699789999648986623771
Q ss_pred CCCC--------------------------EEEEEECCCEEEEEECCCCEEEE-EECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 3999--------------------------89999849929999889960899-95179998479999299999999949
Q 002495 770 PHLG--------------------------RYLAAAAENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSE 822 (915)
Q Consensus 770 p~~~--------------------------~ll~~~~dg~I~i~D~~t~~~~~-~l~~h~~~V~si~~spdg~~las~s~ 822 (915)
+++. .+.....+..+.+||..++.... .+..+...+.++.+++++.+++....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (346)
T d1jmxb_ 192 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL 271 (346)
T ss_dssp CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECC
T ss_conf 25528999864998167651231112673257540478349999777883687876315660688897179978999429
Q ss_pred CEEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECC
Q ss_conf 90999987889986138883149985399999179998999986980999988999289-9815
Q 002495 823 DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA 885 (915)
Q Consensus 823 d~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~-~~~~ 885 (915)
+.|++||..++ +.+..+.. ...+.+++|+||++++++++.++.|++||..+.+.+ .+..
T Consensus 272 ~~v~v~d~~~~---~~~~~~~~-~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 272 NRLAKYDLKQR---KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp SEEEEEETTTT---EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf 83899989999---39999749-99778999968999999994899299999965879799988
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=4.5e-14 Score=126.74 Aligned_cols=267 Identities=12% Similarity=0.178 Sum_probs=187.6
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEE--CCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCCEEE--EECCCCCCE
Q ss_conf 9999978991999978998234673--247986789999899998999838-98099997789995478--842578875
Q 002495 649 LLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLR--TFMGHSASV 723 (915)
Q Consensus 649 ~Latgs~Dg~I~iwd~~~~~~~~~l--~~h~~~V~~i~fspdg~~Lasgs~-Dg~I~iwdl~~~~~~~~--~~~~h~~~V 723 (915)
.+++++.|++|+||++.....+..+ ..|.+.+.+|+|+||+++|++++. |+.|++|+++....... ....+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 99987899938999983999769999975799886899958979999997789969999996898707985301369985
Q ss_pred EEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE-----CCCEEEEEECCCCEEEEEEC-CCEEEEEECCCCEEEE-
Q ss_conf 8999748999199998189819999947990578862-----68107999139998999984-9929999889960899-
Q 002495 724 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL- 796 (915)
Q Consensus 724 ~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~-----~~~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~~~- 796 (915)
..++|+|+++.+++++..++.|.+|+........... .....+.+++++..++++.. +..|.+|+........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEE
T ss_conf 49999599988742056888302200111000000100377853149886301013102565542056897326874100
Q ss_pred -----EECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCC-CEEEEEC------CCCCCEEEEEEECCCCEEE
Q ss_conf -----951799984799992999999999499--0999987889986-1388831------4998539999917999899
Q 002495 797 -----SLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEG-ECVHELS------CNGNKFHSCVFHPTYPSLL 862 (915)
Q Consensus 797 -----~l~~h~~~V~si~~spdg~~las~s~d--~I~iwdl~s~~~~-~~i~~~~------~~~~~i~~i~~spdg~~li 862 (915)
...........++|++++.+++..... ...+|++...... ....... ........+.+++++++++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred EECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEE
T ss_conf 10001334038875279996020147862046672178851035552021002234306877655312689951567205
Q ss_pred EEEC-CCEEEEEECCCCCEE----EECCCCCCEEEEEEECCCCEEEEEE-CCCCEEECC
Q ss_conf 9986-980999988999289----9815689869999937999999996-698299909
Q 002495 863 VIGC-YQSLELWNMSENKTM----TLTAHEGLIAALAVSTETGYVASAS-HDKFVKLWK 915 (915)
Q Consensus 863 sgs~-dg~I~iwd~~~~~~~----~~~~h~~~V~~ia~spdg~~Lasgs-~Dg~I~IWd 915 (915)
+... ++.+.+|++...... ........+.+++|+|||++|++++ .++.|++|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 50456882787887399978999999678997628999079899999988999399999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=2.9e-15 Score=136.61 Aligned_cols=263 Identities=10% Similarity=0.046 Sum_probs=165.7
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCC-------CEEEEEECCCC
Q ss_conf 4457415999859999938999999997----------899199997899823467324798-------67899998999
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFSPSM 689 (915)
Q Consensus 627 ~~~~l~~H~~~V~~iafspdg~~Latgs----------~Dg~I~iwd~~~~~~~~~l~~h~~-------~V~~i~fspdg 689 (915)
.+.++..+.. ..++|+|||++|++++ .|+.|++||+.+++.+..+..+.. ....+.|++++
T Consensus 40 ~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 117 (355)
T d2bbkh_ 40 VIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 117 (355)
T ss_dssp EEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred EEEEEECCCC--CCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCC
T ss_conf 9999989999--85699489999999967776420158999899999999979889805886403117987349993388
Q ss_pred CEEEEEEC--CCEEEEEECCCCCCEEEEECCCCCC-------EEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE
Q ss_conf 98999838--9809999778999547884257887-------58999748999199998189819999947990578862
Q 002495 690 PRLATSSF--DKTVRVWDADNPGYSLRTFMGHSAS-------VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 760 (915)
Q Consensus 690 ~~Lasgs~--Dg~I~iwdl~~~~~~~~~~~~h~~~-------V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~ 760 (915)
+++++++. +..+.+|+..+ +..+..+..+... ...+.+++++..+++....++.+.+++........ .
T Consensus 118 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~--~ 194 (355)
T d2bbkh_ 118 KTLLFYQFSPAPAVGVVDLEG-KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED--E 194 (355)
T ss_dssp SEEEEEECSSSCEEEEEETTT-TEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT--S
T ss_pred CEEEEECCCCCCEEEEEECCC-CCEEEEEECCCCCEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEE--C
T ss_conf 715773279882045430578-8376677058740473069963699938999899983478737999624333000--1
Q ss_pred CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEE--ECCC----------CCCEEEEEECCCCCEEEEEEC------
Q ss_conf 6810799913999899998499299998899608999--5179----------998479999299999999949------
Q 002495 761 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS--LQGH----------TKPIDSVCWDPSGELLASVSE------ 822 (915)
Q Consensus 761 ~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~--l~~h----------~~~V~si~~spdg~~las~s~------ 822 (915)
.......+...+..++.+..++.+++|+...+..... ...+ ......+.+++++..++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~ 274 (355)
T d2bbkh_ 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 274 (355)
T ss_dssp CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred CEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEE
T ss_conf 10610215389973887469982999965899079984457844126854330351089998079976788740687126
Q ss_pred ----C-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCE--EEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEE
Q ss_conf ----9-0999987889986138883149985399999179998--999986980999988999289-9815689869999
Q 002495 823 ----D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS--LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALA 894 (915)
Q Consensus 823 ----d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~--lisgs~dg~I~iwd~~~~~~~-~~~~h~~~V~~ia 894 (915)
. .|.+||..++ +.+..+.. ...+.+++|+|+++. ++++..++.|++||+.+++.+ .+..+.....++.
T Consensus 275 ~~~~~~~v~v~d~~t~---~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~ 350 (355)
T d2bbkh_ 275 HKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT 350 (355)
T ss_dssp TTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred ECCCCCEEEEEECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEE
T ss_conf 5179975999867888---49899668-9987799992899969999978999899999999989999928697965899
Q ss_pred EECC
Q ss_conf 9379
Q 002495 895 VSTE 898 (915)
Q Consensus 895 ~spd 898 (915)
+..+
T Consensus 351 ~~d~ 354 (355)
T d2bbkh_ 351 TADM 354 (355)
T ss_dssp CCCC
T ss_pred ECCC
T ss_conf 6999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=2.7e-13 Score=120.31 Aligned_cols=275 Identities=8% Similarity=0.050 Sum_probs=188.2
Q ss_pred CEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEE
Q ss_conf 859999938999999997-----899199997899823467324798678999989999899983----------89809
Q 002495 637 KVICCHFSSDGKLLATGG-----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTV 701 (915)
Q Consensus 637 ~V~~iafspdg~~Latgs-----~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~Dg~I 701 (915)
++.-.+.+||++.+++.. .+..|.+||..+++.+.++..+... .++|+||+++|++++ .|+.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 717476589999999982664777671999999999499999899998--569948999999996777642015899989
Q ss_pred EEEECCCCCCEEEEECCCC-------CCEEEEEECCCCCEEEEEE-ECCCCEEEEECCCCEEEEEEECCCEEEEEECCCC
Q ss_conf 9997789995478842578-------8758999748999199998-1898199999479905788626810799913999
Q 002495 702 RVWDADNPGYSLRTFMGHS-------ASVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 773 (915)
Q Consensus 702 ~iwdl~~~~~~~~~~~~h~-------~~V~si~fsp~~~~ll~sg-s~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~ 773 (915)
++||+.+ +..+..+..+. .....+.|++++..+++.. +.+..+.+|+..+++.+..+........+.....
T Consensus 81 ~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d2bbkh_ 81 EVFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD 159 (355)
T ss_dssp EEECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred EEEECCC-CCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCC
T ss_conf 9999999-979889805886403117987349993388715773279882045430578837667705874047306996
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEE------CCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCC-
Q ss_conf 8999984992999988996089995------1799984799992999999999499-0999987889986138883149-
Q 002495 774 RYLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN- 845 (915)
Q Consensus 774 ~ll~~~~dg~I~i~D~~t~~~~~~l------~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~- 845 (915)
..++.+.|+...++..........+ ..+...+....+.+++..++.++.+ .+++|++..+.. ..+.....+
T Consensus 160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~ 238 (355)
T d2bbkh_ 160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALT 238 (355)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSC
T ss_pred CEEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCE-EEEECCCCCC
T ss_conf 369993899989998347873799962433300011061021538997388746998299996589907-9984457844
Q ss_pred ---------CCCEEEEEEECCCCEEEEEECC----------CEEEEEECCCCCEEEECCCCCCEEEEEEECCCC--EEEE
Q ss_conf ---------9853999991799989999869----------809999889992899815689869999937999--9999
Q 002495 846 ---------GNKFHSCVFHPTYPSLLVIGCY----------QSLELWNMSENKTMTLTAHEGLIAALAVSTETG--YVAS 904 (915)
Q Consensus 846 ---------~~~i~~i~~spdg~~lisgs~d----------g~I~iwd~~~~~~~~~~~h~~~V~~ia~spdg~--~Las 904 (915)
......+.+++++..+++...+ +.|.+||..+++.+....+...+.+++|+||++ ++++
T Consensus 239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~ 318 (355)
T d2bbkh_ 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL 318 (355)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEE
T ss_pred CCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf 12685433035108999807997678874068712651799759998678884989966899877999928999699999
Q ss_pred EECCCCEEECC
Q ss_conf 96698299909
Q 002495 905 ASHDKFVKLWK 915 (915)
Q Consensus 905 gs~Dg~I~IWd 915 (915)
++.|+.|++||
T Consensus 319 ~~~d~~i~v~D 329 (355)
T d2bbkh_ 319 STGDKTLYIHD 329 (355)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCEEEEEE
T ss_conf 78999899999
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=7.3e-13 Score=116.77 Aligned_cols=259 Identities=8% Similarity=-0.018 Sum_probs=162.0
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCC-------CEEEEEEC
Q ss_conf 3024457415999859999938999999997----------899199997899823467324798-------67899998
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGG----------HDKKAVLWHTDTLKSKTNLEEHSS-------LITDVRFS 686 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~iafspdg~~Latgs----------~Dg~I~iwd~~~~~~~~~l~~h~~-------~V~~i~fs 686 (915)
+.+.+..+..+... .++|+|||+.|++.+ .|+.|.+||..+++.+..+..+.. ....+.|+
T Consensus 55 ~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S 132 (368)
T d1mdah_ 55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC 132 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred CCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEEC
T ss_conf 98377888578777--5139899988999755676401035678699998999938306437854210246886405887
Q ss_pred CCCCEEEEEE-CCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE-----
Q ss_conf 9999899983-8980999977899954788425788758999748999199998189819999947990578862-----
Q 002495 687 PSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----- 760 (915)
Q Consensus 687 pdg~~Lasgs-~Dg~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~----- 760 (915)
+|+++|+++. .++.|.+||+.+ ......+..+.... +.+.+...+++.+.||.+.+|++..........
T Consensus 133 pDGk~l~va~~~~~~v~~~d~~~-~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~ 207 (368)
T d1mdah_ 133 ASSACLLFFLFGSSAAAGLSVPG-ASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT 207 (368)
T ss_dssp TTSSCEEEEECSSSCEEEEEETT-TEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC
T ss_pred CCCCEEEEEECCCCEEEEEECCC-CCEEEEEECCCCCE----ECCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCC
T ss_conf 89989999968998599998998-93867860467523----74699823999948998899982689626665303111
Q ss_pred ----CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEC--CC----------CCCEEEEEECCCCCEEEEEEC--
Q ss_conf ----681079991399989999849929999889960899951--79----------998479999299999999949--
Q 002495 761 ----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GH----------TKPIDSVCWDPSGELLASVSE-- 822 (915)
Q Consensus 761 ----~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~h----------~~~V~si~~spdg~~las~s~-- 822 (915)
.......+.+++. +.....+.+++++........... .+ ......+++++++..++....
T Consensus 208 ~~~~~~~~~~~~~~~g~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~ 285 (368)
T d1mdah_ 208 GAQNCSSQAAQANYPGM--LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285 (368)
T ss_dssp TTSCBCSCCEEETTTTE--EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred CCCCCCEEECCCCCCCE--EEEECCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCC
T ss_conf 35666466010155868--9993489779996069936997602465430455401278835688717998799983589
Q ss_pred -------C-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCE-E-EEEECCCEEEEEECCCCCEEEECCCCCCEEE
Q ss_conf -------9-0999987889986138883149985399999179998-9-9998698099998899928998156898699
Q 002495 823 -------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS-L-LVIGCYQSLELWNMSENKTMTLTAHEGLIAA 892 (915)
Q Consensus 823 -------d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~-l-isgs~dg~I~iwd~~~~~~~~~~~h~~~V~~ 892 (915)
. .|.+||..++ +.+..+.. ...+..+.|+||++. + ++...++.|++||..+++.+....-...-..
T Consensus 286 ~~~~~~~~~~v~v~D~~t~---~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~ 361 (368)
T d1mdah_ 286 SRSCLAAAENTSSVTASVG---QTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPES 361 (368)
T ss_dssp SSCTTSCEEEEEEEESSSC---CEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCE
T ss_pred CCEEECCCCEEEEEECCCC---CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCE
T ss_conf 7334058864999989999---48689558-9965179999899989999948999699998999979999879999878
Q ss_pred EEE
Q ss_conf 999
Q 002495 893 LAV 895 (915)
Q Consensus 893 ia~ 895 (915)
|++
T Consensus 362 l~~ 364 (368)
T d1mdah_ 362 LSV 364 (368)
T ss_dssp EEC
T ss_pred EEE
T ss_conf 997
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.55 E-value=2.3e-11 Score=104.34 Aligned_cols=276 Identities=14% Similarity=0.034 Sum_probs=154.6
Q ss_pred EECCCCCEEEEEECCCCCEEEEEEC---------CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 4159998599999389999999978---------9919999789982346732479867899998999989998389809
Q 002495 631 VRASTSKVICCHFSSDGKLLATGGH---------DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 701 (915)
Q Consensus 631 l~~H~~~V~~iafspdg~~Latgs~---------Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I 701 (915)
+..|...|.++.|||||++|+.++. ++.+.|||+.+++ ...+..+...+..+.|+|||++||... ++.+
T Consensus 57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l 134 (470)
T d2bgra1 57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDI 134 (470)
T ss_dssp TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEE
T ss_pred HHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCC
T ss_conf 44316765405998988979999777100010467349999898885-131246874231010146764135751-4641
Q ss_pred EEEECCCCCCEEEEECC------------------CCCCEEEEEECCCCCEEEEEEECCCCEEEEECC------------
Q ss_conf 99977899954788425------------------788758999748999199998189819999947------------
Q 002495 702 RVWDADNPGYSLRTFMG------------------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN------------ 751 (915)
Q Consensus 702 ~iwdl~~~~~~~~~~~~------------------h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~------------ 751 (915)
++|+..+ +...+.... ..+....+.|+|+++.+++....+..|..|.+.
T Consensus 135 ~~~~~~~-g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~ 213 (470)
T d2bgra1 135 YVKIEPN-LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT 213 (470)
T ss_dssp EEESSTT-SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred EEEECCC-CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEE
T ss_conf 3798899-946532101477740535432011210047765307999987220268637767069987660477788713
Q ss_pred -----------------------CCEEEEEEE--------------CCCEEEEEECCCCEEEEEEC-C-C----EEEEEE
Q ss_conf -----------------------990578862--------------68107999139998999984-9-9----299998
Q 002495 752 -----------------------NGSCTRVFK--------------GGTAQMRFQPHLGRYLAAAA-E-N----VVSILD 788 (915)
Q Consensus 752 -----------------------~~~~~~~~~--------------~~~~~i~~sp~~~~ll~~~~-d-g----~I~i~D 788 (915)
.+....... ..+..+.|.+++..++.... . + .+..+|
T Consensus 214 ~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d 293 (470)
T d2bgra1 214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (470)
T ss_dssp EEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred EEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEC
T ss_conf 54036654546886257999988861455203322478633478986677888768783347873046881599999961
Q ss_pred CCCCEEEEEEC------CCCCC-----EEEEEECCCCC--EEEEEECC---EEEEEECCCCCCCCEEEEECCCCCCEEEE
Q ss_conf 89960899951------79998-----47999929999--99999499---09999878899861388831499853999
Q 002495 789 AETQACRLSLQ------GHTKP-----IDSVCWDPSGE--LLASVSED---SVRVWTVGSGSEGECVHELSCNGNKFHSC 852 (915)
Q Consensus 789 ~~t~~~~~~l~------~h~~~-----V~si~~spdg~--~las~s~d---~I~iwdl~s~~~~~~i~~~~~~~~~i~~i 852 (915)
..++....... ..... -....|.+++. +++....+ .|++|+...+ ....+......+..+
T Consensus 294 ~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~----~~~~lt~g~~~v~~~ 369 (470)
T d2bgra1 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK----DCTFITKGTWEVIGI 369 (470)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS----CCEESCCSSSCEEEE
T ss_pred CCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEECCCCCCEEEEEECCCC----CEEEECCCCEEEEEE
T ss_conf 8889478999875146621433531357772454237884798743675764599952687----304511698048787
Q ss_pred EEECCCCEEEEE-ECCC------EEEEEECCCCCEEE-----ECCCCCCEEEEEEECCCCEEEEEE---CCCCEEEC
Q ss_conf 991799989999-8698------09999889992899-----815689869999937999999996---69829990
Q 002495 853 VFHPTYPSLLVI-GCYQ------SLELWNMSENKTMT-----LTAHEGLIAALAVSTETGYVASAS---HDKFVKLW 914 (915)
Q Consensus 853 ~~spdg~~lisg-s~dg------~I~iwd~~~~~~~~-----~~~h~~~V~~ia~spdg~~Lasgs---~Dg~I~IW 914 (915)
+++++..++.. ..++ .|+-.++..+.... +..|...+..++|+||+++++..+ ..-.+.+|
T Consensus 370 -~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~ 445 (470)
T d2bgra1 370 -EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH 445 (470)
T ss_dssp -EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEE
T ss_pred -EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEE
T ss_conf -8977999999995689983517999998889986057035435888987999999899999998328999819999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.47 E-value=1.5e-11 Score=105.94 Aligned_cols=323 Identities=9% Similarity=0.002 Sum_probs=199.0
Q ss_pred CCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 79980684777116652100002688777534410268999878888643235675302445741599985999993899
Q 002495 568 SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG 647 (915)
Q Consensus 568 ~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~H~~~V~~iafspdg 647 (915)
++.+.+|++..++....+.-+..++.. .|-. .+...+.+. ..........|.-.+.+..+++||
T Consensus 20 sG~V~V~dlpS~r~l~~IpVfspd~~~-----g~g~------~~es~~vl~-----~~~~~~~gd~hhP~~s~t~gtpDG 83 (441)
T d1qnia2 20 QGEVRVLGVPSMRELMRIPVFNVDSAT-----GWGI------TNESKEILG-----GDQQYLNGDCHHPHISMTDGRYDG 83 (441)
T ss_dssp TCCEEEEEETTTEEEEEECSSSBCTTT-----CTTT------SHHHHHHHC-----SSSCCSCCCBCCCEEEEETTEEEE
T ss_pred CCCEEEEECCCCCEEEEEEEECCCCCE-----EEEE------CCCCCEEEE-----CCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 774899967898079999767578987-----9998------886504783-----133225675567772210326888
Q ss_pred CEEEEEE-CCCCEEEEECCCCCEEEEECC-CCCCEEEEEECCCCCE--EEEEECCC-----------------EEEEEEC
Q ss_conf 9999997-899199997899823467324-7986789999899998--99983898-----------------0999977
Q 002495 648 KLLATGG-HDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPR--LATSSFDK-----------------TVRVWDA 706 (915)
Q Consensus 648 ~~Latgs-~Dg~I~iwd~~~~~~~~~l~~-h~~~V~~i~fspdg~~--Lasgs~Dg-----------------~I~iwdl 706 (915)
++|++.. .+..|.++|+++++....+.. +...+..++|+++++. ++..+.+. .+..+|.
T Consensus 84 r~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~ 163 (441)
T d1qnia2 84 KYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA 163 (441)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 88999738999799998877847557956788786434870569989999566775443676630014555323886637
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEEEECCCEE
Q ss_conf 899954788425788758999748999199998189819999947990578862--681079991399989999849929
Q 002495 707 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVV 784 (915)
Q Consensus 707 ~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~--~~~~~i~~sp~~~~ll~~~~dg~I 784 (915)
.+ ......+. .......+.|+|+++.+++++.....+..++..+......+. .....+.+.++++.+ ..+.++.+
T Consensus 164 ~t-~~v~~qI~-v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~-~v~~~~v~ 240 (441)
T d1qnia2 164 ET-MDVAWQVI-VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK-TIGDSKVP 240 (441)
T ss_dssp TT-CSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB-CCTTCCCC
T ss_pred CC-CEEEEEEE-CCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCEE-EECCCCCE
T ss_conf 55-60647873-69986546987999989998517873189851571217899968851107996699999-96999828
Q ss_pred EEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE-CC-EEEEEECCCCC--------CCCEEEEECCCCCCEEEEEE
Q ss_conf 9998899608999517999847999929999999994-99-09999878899--------86138883149985399999
Q 002495 785 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGS--------EGECVHELSCNGNKFHSCVF 854 (915)
Q Consensus 785 ~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s-~d-~I~iwdl~s~~--------~~~~i~~~~~~~~~i~~i~~ 854 (915)
.+++......+..+..... ...+.++|||+++++++ .+ +|.+||+.+.. ...++......+-......|
T Consensus 241 vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f 319 (441)
T d1qnia2 241 VVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF 319 (441)
T ss_dssp EEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred EEECCCCCCEEEEEECCCC-CCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEE
T ss_conf 9980368706899717988-667268999878999077599389998322445752568842479960145547665226
Q ss_pred ECCCCEEEEEECCCEEEEEECCC----------CCEE-EE-----CCCCCCEEEEEEECCCCEEEEEE---CCCC
Q ss_conf 17999899998698099998899----------9289-98-----15689869999937999999996---6982
Q 002495 855 HPTYPSLLVIGCYQSLELWNMSE----------NKTM-TL-----TAHEGLIAALAVSTETGYVASAS---HDKF 910 (915)
Q Consensus 855 spdg~~lisgs~dg~I~iwd~~~----------~~~~-~~-----~~h~~~V~~ia~spdg~~Lasgs---~Dg~ 910 (915)
.+++..+.+...|..|..|++.. ..++ .+ .+|...+.+.+++|||+||++++ .|..
T Consensus 320 d~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~ 394 (441)
T d1qnia2 320 DGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRF 394 (441)
T ss_dssp CSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGS
T ss_pred CCCCEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 578559985244316897235422133226777656864532668987752454223898848996574442557
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.46 E-value=4.7e-11 Score=101.78 Aligned_cols=276 Identities=8% Similarity=-0.029 Sum_probs=157.4
Q ss_pred CCCEEEEEECCCCCEEEE---EECCC--CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCC
Q ss_conf 998599999389999999---97899--199997899823467324798678999989999899983----------898
Q 002495 635 TSKVICCHFSSDGKLLAT---GGHDK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDK 699 (915)
Q Consensus 635 ~~~V~~iafspdg~~Lat---gs~Dg--~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs----------~Dg 699 (915)
.+....++..++++.... ...++ .|.+||..+++.+.++..+... .+.|+||++.|++++ .|+
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 79866645589876126972045788621799708998377888578777--5139899988999755676401035678
Q ss_pred EEEEEECCCCCCEEEEECCCC-------CCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCC
Q ss_conf 099997789995478842578-------8758999748999199998189819999947990578862681079991399
Q 002495 700 TVRVWDADNPGYSLRTFMGHS-------ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 772 (915)
Q Consensus 700 ~I~iwdl~~~~~~~~~~~~h~-------~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~ 772 (915)
.|.+||..+ .+.+..+..+. .....++|+||+++++++...++.|.+||+.+.+.+..+..+.....+....
T Consensus 97 ~v~v~D~~t-~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T d1mdah_ 97 YVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAA 175 (368)
T ss_dssp EEEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEET
T ss_pred EEEEEECCC-CCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCCCC
T ss_conf 699998999-9383064378542102468864058878998999996899859999899893867860467523746998
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEE------CCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEEECCC-
Q ss_conf 98999984992999988996089995------17999847999929999999994990999987889986138883149-
Q 002495 773 GRYLAAAAENVVSILDAETQACRLSL------QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN- 845 (915)
Q Consensus 773 ~~ll~~~~dg~I~i~D~~t~~~~~~l------~~h~~~V~si~~spdg~~las~s~d~I~iwdl~s~~~~~~i~~~~~~- 845 (915)
..+++.+.|+.+.+++.......... ..+...+..+.+.+++..+.+... .++++++..... ..+......
T Consensus 176 ~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~v~~~~~~~~~~-~~~~~~~~~~ 253 (368)
T d1mdah_ 176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVAS-SILQGDIPAAGA-TMKAAIDGNE 253 (368)
T ss_dssp TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSS-CCEEEECCSSCC-EEECCCCSSC
T ss_pred CEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEECCC-CEEEEEECCCCE-EEEEECCCCC
T ss_conf 23999948998899982689626665303111356664660101558689993489-779996069936-9976024654
Q ss_pred ---------CCCEEEEEEECCCCEEEEEECC---------CEEEEEECCCCCEEEECCCCCCEEEEEEECCCC-E-EEEE
Q ss_conf ---------9853999991799989999869---------809999889992899815689869999937999-9-9999
Q 002495 846 ---------GNKFHSCVFHPTYPSLLVIGCY---------QSLELWNMSENKTMTLTAHEGLIAALAVSTETG-Y-VASA 905 (915)
Q Consensus 846 ---------~~~i~~i~~spdg~~lisgs~d---------g~I~iwd~~~~~~~~~~~h~~~V~~ia~spdg~-~-Lasg 905 (915)
......+++++++..+++...+ ..|.+||..+++.+....+...+.+++|+||++ + ++++
T Consensus 254 ~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~ 333 (368)
T d1mdah_ 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEE
T ss_conf 30455401278835688717998799983589733405886499998999948689558996517999989998999994
Q ss_pred ECCCCEEECC
Q ss_conf 6698299909
Q 002495 906 SHDKFVKLWK 915 (915)
Q Consensus 906 s~Dg~I~IWd 915 (915)
..|+.|++||
T Consensus 334 ~~~~~v~v~D 343 (368)
T d1mdah_ 334 AGTEVLDIYD 343 (368)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEEE
T ss_conf 8999699998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.31 E-value=2.2e-09 Score=88.01 Aligned_cols=254 Identities=11% Similarity=0.083 Sum_probs=142.4
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC------------------CCCCEEEEEECCC
Q ss_conf 4457415999859999938999999997899199997899823467324------------------7986789999899
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------------------HSSLITDVRFSPS 688 (915)
Q Consensus 627 ~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~------------------h~~~V~~i~fspd 688 (915)
....+..|.+.+..+.|||||+++|... ++.+++|+..++........ ..+....+.|+||
T Consensus 103 ~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPD 181 (470)
T d2bgra1 103 QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN 181 (470)
T ss_dssp EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCC
T ss_conf 5131246874231010146764135751-464137988999465321014777405354320112100477653079999
Q ss_pred CCEEEEEECCCE-EEEEECC---CCC---CE-----------------EEEE----------------------CCCCCC
Q ss_conf 998999838980-9999778---999---54-----------------7884----------------------257887
Q 002495 689 MPRLATSSFDKT-VRVWDAD---NPG---YS-----------------LRTF----------------------MGHSAS 722 (915)
Q Consensus 689 g~~Lasgs~Dg~-I~iwdl~---~~~---~~-----------------~~~~----------------------~~h~~~ 722 (915)
|++|++...|.+ |..|.+. ... .. +..+ ......
T Consensus 182 Gk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (470)
T d2bgra1 182 GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHY 261 (470)
T ss_dssp SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEE
T ss_pred CCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCE
T ss_conf 87220268637767069987660477788713540366545468862579999888614552033224786334789866
Q ss_pred EEEEEECCCCCEEEEEEECCC-----CEEEEECCCCEEEEEEEC--------------CCEEEEEECCCCEE--EEEECC
Q ss_conf 589997489991999981898-----199999479905788626--------------81079991399989--999849
Q 002495 723 VMSLDFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRVFKG--------------GTAQMRFQPHLGRY--LAAAAE 781 (915)
Q Consensus 723 V~si~fsp~~~~ll~sgs~Dg-----~I~iwdi~~~~~~~~~~~--------------~~~~i~~sp~~~~l--l~~~~d 781 (915)
+..+.|.+++..++......+ .++.+|..++........ ......+.++++.+ +....+
T Consensus 262 ~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~d 341 (470)
T d2bgra1 262 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE 341 (470)
T ss_dssp EEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT
T ss_pred EEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEECCC
T ss_conf 77888768783347873046881599999961888947899987514662143353135777245423788479874367
Q ss_pred CE--EEEEECCCCEEEEEECCCCCCEEEEEECCCCCEE-EEEECC--E-----EEEEECCCCCCCCEE-EEECCCCCCEE
Q ss_conf 92--9999889960899951799984799992999999-999499--0-----999987889986138-88314998539
Q 002495 782 NV--VSILDAETQACRLSLQGHTKPIDSVCWDPSGELL-ASVSED--S-----VRVWTVGSGSEGECV-HELSCNGNKFH 850 (915)
Q Consensus 782 g~--I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~l-as~s~d--~-----I~iwdl~s~~~~~~i-~~~~~~~~~i~ 850 (915)
+. |++|+........ +..+...|..+ +.++++.+ +++..+ . |+..++..+....++ ..+..+...+.
T Consensus 342 g~~~ly~~~~~g~~~~~-lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~ 419 (470)
T d2bgra1 342 GYRHICYFQIDKKDCTF-ITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYY 419 (470)
T ss_dssp SCEEEEEEETTCSCCEE-SCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBE
T ss_pred CCCEEEEEECCCCCEEE-ECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEE
T ss_conf 57645999526873045-11698048787-89779999999956899835179999988899860570354358889879
Q ss_pred EEEEECCCCEEEEEECC---CEEEEEECCCCCEEEE
Q ss_conf 99991799989999869---8099998899928998
Q 002495 851 SCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTL 883 (915)
Q Consensus 851 ~i~~spdg~~lisgs~d---g~I~iwd~~~~~~~~~ 883 (915)
.++|+|++++++..... -.+.+|+..+++.+..
T Consensus 420 s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~ 455 (470)
T d2bgra1 420 SVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRV 455 (470)
T ss_dssp EEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEE
T ss_pred EEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEE
T ss_conf 999998999999983289998199999899989999
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=2.1e-07 Score=71.56 Aligned_cols=232 Identities=13% Similarity=0.160 Sum_probs=117.9
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCE
Q ss_conf 199997899823467324798678999989999899983898---09999778999547884257887589997489991
Q 002495 658 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK---TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 734 (915)
Q Consensus 658 ~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg---~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ 734 (915)
.|+|.|.+.. ....+..+...+...+|+|||+.||....+. .+.+.+... .....+..+...+....|+|++..
T Consensus 20 ~l~i~d~dG~-~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAVRQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEECCCCC-CCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCC--CCEEEEEEEECCCCCCEECCCCCE
T ss_conf 9999928999-7679865898426038878999899998152675134431136--750677642024543024488986
Q ss_pred EEEEEECCCCEEEEECC--CCEEEEEEEC--CCEEEEEECCCCEEEEEEC-CC--EEEEEECCCCEEEEEECCCCCCEEE
Q ss_conf 99998189819999947--9905788626--8107999139998999984-99--2999988996089995179998479
Q 002495 735 LICSCDGDGEIRYWSIN--NGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPIDS 807 (915)
Q Consensus 735 ll~sgs~Dg~I~iwdi~--~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~-dg--~I~i~D~~t~~~~~~l~~h~~~V~s 807 (915)
+++....++...++... .......... ......+......++.... ++ .|.+++........ +.........
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~ 175 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQD 175 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEE
T ss_pred EEEEEECCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCEE-EECCCCCCCC
T ss_conf 467640278641000022212200001014421145434554433000012687438654213310001-0001222234
Q ss_pred EEECCCCCEEEEEECC--E--EEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECC---CEEEEEECCCCCE
Q ss_conf 9992999999999499--0--9999878899861388831499853999991799989999869---8099998899928
Q 002495 808 VCWDPSGELLASVSED--S--VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 880 (915)
Q Consensus 808 i~~spdg~~las~s~d--~--I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs~d---g~I~iwd~~~~~~ 880 (915)
..|+|+++.++..+.+ . +.+++...+ . . .............|+|||++|+..+.. ..|+++++..+..
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~---~-~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG---G-V-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTC---C-E-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEEECCCC---C-C-EEEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCE
T ss_conf 322345430577860588012567603564---4-0-5850686544558989999999998179984799999999977
Q ss_pred EEECCCCCCEEEEEEECC
Q ss_conf 998156898699999379
Q 002495 881 MTLTAHEGLIAALAVSTE 898 (915)
Q Consensus 881 ~~~~~h~~~V~~ia~spd 898 (915)
..+....+.+...+|+|-
T Consensus 251 ~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 251 ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EECCCSSSEEEEEEECCC
T ss_pred EEEECCCCCEEEEEECCC
T ss_conf 998579985883782898
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.26 E-value=1.4e-09 Score=89.47 Aligned_cols=251 Identities=8% Similarity=-0.007 Sum_probs=151.8
Q ss_pred CCEEEEEEE-CCCCCEEEEEECCCCC--EEEEEECCC-----------------CEEEEECCCCCEEEEECCCCCCEEEE
Q ss_conf 302445741-5999859999938999--999997899-----------------19999789982346732479867899
Q 002495 624 SFKEANSVR-ASTSKVICCHFSSDGK--LLATGGHDK-----------------KAVLWHTDTLKSKTNLEEHSSLITDV 683 (915)
Q Consensus 624 ~~~~~~~l~-~H~~~V~~iafspdg~--~Latgs~Dg-----------------~I~iwd~~~~~~~~~l~~h~~~V~~i 683 (915)
++++...++ .+...+..++|+++++ +++..+.+. .+..+|..+.+....+... .....+
T Consensus 103 t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v 181 (441)
T d1qnia2 103 IMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNT 181 (441)
T ss_dssp TTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCE
T ss_pred CCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECC-CCCCCE
T ss_conf 7847557956788786434870569989999566775443676630014555323886637556064787369-986546
Q ss_pred EECCCCCEEEEEECCC-EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC-
Q ss_conf 9989999899983898-09999778999547884257887589997489991999981898199999479905788626-
Q 002495 684 RFSPSMPRLATSSFDK-TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG- 761 (915)
Q Consensus 684 ~fspdg~~Lasgs~Dg-~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~- 761 (915)
.|+++++++++.+.+. .+..++..+ ......+... ..-..+.+.++++.+ ..+.++.+.+++....+.++.+..
T Consensus 182 ~~spdGk~a~vt~~nse~~~~id~~t-~~~~d~i~v~-n~p~~~~~~~dGk~~--~v~~~~v~vvd~~~~~~v~~~IPvg 257 (441)
T d1qnia2 182 DADYTGKYATSTCYNSERAVDLAGTM-RNDRDWVVVF-NVERIAAAVKAGNFK--TIGDSKVPVVDGRGESEFTRYIPVP 257 (441)
T ss_dssp EECSSSSEEEEEESCTTCCSSHHHHT-CSSBCEEEEE-EHHHHHHHHHTTCCB--CCTTCCCCEEECSSSCSSEEEECCB
T ss_pred EECCCCCEEEEEECCCCCEEEEECCC-CCEEEEEEEC-CCCCEEEEECCCCEE--EECCCCCEEEECCCCCCEEEEEECC
T ss_conf 98799998999851787318985157-1217899968-851107996699999--9699982899803687068997179
Q ss_pred -CCEEEEEECCCCEEEEEEC-CCEEEEEECCCCE-----------EEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEE
Q ss_conf -8107999139998999984-9929999889960-----------899951799984799992999999999499-0999
Q 002495 762 -GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQA-----------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 827 (915)
Q Consensus 762 -~~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~-----------~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~i 827 (915)
....+.++|++.++++++. +++|.+||+++.. ++.-.....-......|+++|..+.+...| .|..
T Consensus 258 ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~k 337 (441)
T d1qnia2 258 KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCK 337 (441)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCCCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEE
T ss_conf 88667268999878999077599389998322445752568842479960145547665226578559985244316897
Q ss_pred EECCC------CC-CCCEEEEEC-----CCCCCEEEEEEECCCCEEEEEEC---CC----------EEEEEECCCCC
Q ss_conf 98788------99-861388831-----49985399999179998999986---98----------09999889992
Q 002495 828 WTVGS------GS-EGECVHELS-----CNGNKFHSCVFHPTYPSLLVIGC---YQ----------SLELWNMSENK 879 (915)
Q Consensus 828 wdl~s------~~-~~~~i~~~~-----~~~~~i~~i~~spdg~~lisgs~---dg----------~I~iwd~~~~~ 879 (915)
|++.. +. ....+..+. +|...+.+..++|+|++|++++. |+ .-.++|+...+
T Consensus 338 w~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~ 414 (441)
T d1qnia2 338 WNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEE 414 (441)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSS
T ss_pred ECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCE
T ss_conf 23542213322677765686453266898775245422389884899657444255767888987644269815975
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.26 E-value=7.4e-08 Score=75.34 Aligned_cols=246 Identities=8% Similarity=-0.013 Sum_probs=133.7
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE--CCCCCCEEEEEECCCCCEEE--EEEC-CCEEEEEECCC
Q ss_conf 9998599999389999999978991999978998234673--24798678999989999899--9838-98099997789
Q 002495 634 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EEHSSLITDVRFSPSMPRLA--TSSF-DKTVRVWDADN 708 (915)
Q Consensus 634 H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l--~~h~~~V~~i~fspdg~~La--sgs~-Dg~I~iwdl~~ 708 (915)
....+..|+|++++++|+++.. +.+..|.+.....+... .......+.+.++++++.++ ++.. .+.|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEECCCCCEEEEEEC-CCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf 8999777999489899999938-947899990899769876412899867899878998799999327997899867457
Q ss_pred CCCEEEE----------------ECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEE---EEE-----CCCE
Q ss_conf 9954788----------------425788758999748999199998189819999947990578---862-----6810
Q 002495 709 PGYSLRT----------------FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---VFK-----GGTA 764 (915)
Q Consensus 709 ~~~~~~~----------------~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~---~~~-----~~~~ 764 (915)
.+..... .......+.++.|+|++++++++......|.+|+......+. ... .+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr 196 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEE
T ss_conf 88742068664033004764675568898115978889999899820799879999706887166525111127887408
Q ss_pred EEEEECCCCEEEEEEC-CCEEEEEECCCCEE--EEEEC-----------------CCCCCEEEEEECCCCCEEEEEEC--
Q ss_conf 7999139998999984-99299998899608--99951-----------------79998479999299999999949--
Q 002495 765 QMRFQPHLGRYLAAAA-ENVVSILDAETQAC--RLSLQ-----------------GHTKPIDSVCWDPSGELLASVSE-- 822 (915)
Q Consensus 765 ~i~~sp~~~~ll~~~~-dg~I~i~D~~t~~~--~~~l~-----------------~h~~~V~si~~spdg~~las~s~-- 822 (915)
.+.|+|++..+++... ++.|.+|+...... +.... ........+.++|+|++|+++..
T Consensus 197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~ 276 (365)
T d1jofa_ 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCC
T ss_conf 99988998669995158998999995598753778731240245565566654444357763169989999789971357
Q ss_pred C-----EEEEEECCCCCCCC---EEEEECCCCCCEEEEEEEC-CCCEEEEEEC-CCEEEEEECCCCCE
Q ss_conf 9-----09999878899861---3888314998539999917-9998999986-98099998899928
Q 002495 823 D-----SVRVWTVGSGSEGE---CVHELSCNGNKFHSCVFHP-TYPSLLVIGC-YQSLELWNMSENKT 880 (915)
Q Consensus 823 d-----~I~iwdl~s~~~~~---~i~~~~~~~~~i~~i~~sp-dg~~lisgs~-dg~I~iwd~~~~~~ 880 (915)
+ .|..|++....... .+......+.....+.++| ++++|+++.. ++.|.+|++.....
T Consensus 277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred CCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf 87542279999856887144676766777679986478964899999999967999499999828867
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.22 E-value=1.3e-07 Score=73.44 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=32.5
Q ss_pred EEEEEECCCCCEEEEEEC-CCEEEEEECCCCCCEEEE----ECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCC
Q ss_conf 789999899998999838-980999977899954788----42578875899974899919999818981999994799
Q 002495 680 ITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRT----FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 753 (915)
Q Consensus 680 V~~i~fspdg~~Lasgs~-Dg~I~iwdl~~~~~~~~~----~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~ 753 (915)
+.++.|+|+++++++++. ...|.+|++...+..... ..........+.|+|+++.++++...++.|.+|++...
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 1597888999989982079987999970688716652511112788740899988998669995158998999995598
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.18 E-value=3.3e-07 Score=69.92 Aligned_cols=237 Identities=11% Similarity=0.048 Sum_probs=133.2
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 02445741599985999993899999999789919999789982346732479867899998999989998389809999
Q 002495 625 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 704 (915)
Q Consensus 625 ~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iw 704 (915)
.+.+..+.... .+..+++++||+++++...+++|..|+... + ...+......+.+++|.++++++++...++.+.+|
T Consensus 18 ~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~ 94 (302)
T d2p4oa1 18 AKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV 94 (302)
T ss_dssp EEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCEEEECCCCC-CCCCEEECCCCCEEEEECCCCEEEEEECCC-C-EEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEE
T ss_conf 20788888998-847877999988999968899899990899-8-89997179985368986778869983289537888
Q ss_pred ECCCCCCEEEEE--CCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC-----------CEEEEEECC
Q ss_conf 778999547884--2578875899974899919999818981999994799057886268-----------107999139
Q 002495 705 DADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----------TAQMRFQPH 771 (915)
Q Consensus 705 dl~~~~~~~~~~--~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~-----------~~~i~~sp~ 771 (915)
+..........+ .........+.+.+++ .++++.+.++.+..++...+......... .....+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~ 173 (302)
T d2p4oa1 95 SLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 173 (302)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred EECCCCCCEEECCCCCCCCCCCEEEECCCC-CEEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCC
T ss_conf 710111101210235786322166771579-7875035655410242168730367518864014315763224320116
Q ss_pred CCEEEEE-ECCCEEEEEECCCCEEEE--EECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCC
Q ss_conf 9989999-849929999889960899--951799984799992999999999499-099998788998613888314998
Q 002495 772 LGRYLAA-AAENVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 847 (915)
Q Consensus 772 ~~~ll~~-~~dg~I~i~D~~t~~~~~--~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~ 847 (915)
+..++++ ...+.|+.++........ ...........++++++|.++++...+ .|..|+... ....+........
T Consensus 174 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G--~~~~~~~~~~~~~ 251 (302)
T d2p4oa1 174 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR--STTIIAQAEQGVI 251 (302)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC--CEEEEECGGGTCT
T ss_pred CCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEEECCCC--CEEEEEECCCCCC
T ss_conf 98304403788769863443333234531015899875237879999999974899189987899--7899996378988
Q ss_pred CEEEEEE---ECCCCEEEEEECC
Q ss_conf 5399999---1799989999869
Q 002495 848 KFHSCVF---HPTYPSLLVIGCY 867 (915)
Q Consensus 848 ~i~~i~~---spdg~~lisgs~d 867 (915)
..++++| .+|++.|++++..
T Consensus 252 ~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 252 GSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp TEEEEEECCSTTTTTEEEEEECT
T ss_pred CCEEEEECCCCCCCCEEEEECCC
T ss_conf 82489970878878989999889
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.6e-06 Score=64.25 Aligned_cols=222 Identities=14% Similarity=0.147 Sum_probs=142.0
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCC---CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEE
Q ss_conf 57415999859999938999999997899---1999978998234673247986789999899998999838-9809999
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGHDK---KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVW 704 (915)
Q Consensus 629 ~~l~~H~~~V~~iafspdg~~Latgs~Dg---~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-Dg~I~iw 704 (915)
..+..+...+...+|||||+.||....+. .+.+.+..... ...+..+...+.+..|+|+++.++.... ++...++
T Consensus 32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~ 110 (269)
T d2hqsa1 32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 110 (269)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCC-EEEEEEEECCCCCCEECCCCCEEEEEEECCCCCCEE
T ss_conf 7986589842603887899989999815267513443113675-067764202454302448898646764027864100
Q ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCC--EEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEEEEC
Q ss_conf 7789995478842578875899974899919999818981--9999947990578862--68107999139998999984
Q 002495 705 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 705 dl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~--I~iwdi~~~~~~~~~~--~~~~~i~~sp~~~~ll~~~~ 780 (915)
.......................+.+++..++++...++. |.++++.......... .......|++++..++....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 190 (269)
T d2hqsa1 111 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 190 (269)
T ss_dssp EEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred ECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 00222122000010144211454345544330000126874386542133100010001222234322345430577860
Q ss_pred CC---EEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC---C-EEEEEECCCCCCCCEEEEECCCCCCEEEEE
Q ss_conf 99---2999988996089995179998479999299999999949---9-099998788998613888314998539999
Q 002495 781 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 853 (915)
Q Consensus 781 dg---~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~---d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~ 853 (915)
++ .+.+++....... +...........|+|||+.|+..+. . .|+++++..+ . ...+......+...+
T Consensus 191 ~~~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~---~-~~~lt~~~g~~~~p~ 264 (269)
T d2hqsa1 191 NGGQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR---F-KARLPATDGQVKFPA 264 (269)
T ss_dssp CSSCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC---C-EEECCCSSSEEEEEE
T ss_pred CCCCEEEEEEECCCCCCE--EEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCC---C-EEEEECCCCCEEEEE
T ss_conf 588012567603564405--8506865445589899999999981799847999999999---7-799857998588378
Q ss_pred EECC
Q ss_conf 9179
Q 002495 854 FHPT 857 (915)
Q Consensus 854 ~spd 857 (915)
|+|-
T Consensus 265 WSP~ 268 (269)
T d2hqsa1 265 WSPY 268 (269)
T ss_dssp ECCC
T ss_pred ECCC
T ss_conf 2898
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.03 E-value=1e-06 Score=65.96 Aligned_cols=234 Identities=11% Similarity=0.008 Sum_probs=121.9
Q ss_pred CCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEE
Q ss_conf 9859999938999999997-899199997899823467324798678999989999899983898099997789995478
Q 002495 636 SKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 714 (915)
Q Consensus 636 ~~V~~iafspdg~~Latgs-~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~ 714 (915)
..-..++++++|.++++.. ..+.|..++............-......+++.+++.++++....+.+++++..+ ...+.
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~-~~~~~ 92 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN-NQTVL 92 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCS-CCEEC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEEEECC-CEEEE
T ss_conf 98788999699999999718998899993899668974369866840899938998898631000035542112-00000
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE-E--CCCEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 842578875899974899919999818981999994799057886-2--6810799913999899998499299998899
Q 002495 715 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-K--GGTAQMRFQPHLGRYLAAAAENVVSILDAET 791 (915)
Q Consensus 715 ~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~-~--~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t 791 (915)
.. .......++++.+++. ++++-.....+..++.......... . .....+.+.+++..+++...++.|..+|...
T Consensus 93 ~~-~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~ 170 (260)
T d1rwia_ 93 PF-DGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 170 (260)
T ss_dssp CC-CSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred EE-EEEEECCCCCCCCCCE-EEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCC
T ss_conf 01-0000000002455320-575033555321123222201223203667752054548998864102564332223431
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEE
Q ss_conf 60899951799984799992999999999499-09999878899861388831499853999991799989999869809
Q 002495 792 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 870 (915)
Q Consensus 792 ~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I 870 (915)
................++++++++++++.... .|..++..... ..+ ...........+++++++..+++-..++.|
T Consensus 171 ~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~--~~~-~~~~~~~~P~~i~~d~~g~l~vad~~~~rI 247 (260)
T d1rwia_ 171 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT--STV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRV 247 (260)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC--CEE-CCCCSCCCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCE--EEE-ECCCCCCCEEEEEEECCCCEEEEECCCCEE
T ss_conf 00122210114787631231000134321489989999699976--999-706998981799990899999997999989
Q ss_pred EEEEC
Q ss_conf 99988
Q 002495 871 ELWNM 875 (915)
Q Consensus 871 ~iwd~ 875 (915)
+.++.
T Consensus 248 ~~i~~ 252 (260)
T d1rwia_ 248 VKLTS 252 (260)
T ss_dssp EEECC
T ss_pred EEEEC
T ss_conf 99959
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.02 E-value=2e-06 Score=63.39 Aligned_cols=179 Identities=7% Similarity=-0.019 Sum_probs=63.3
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEC
Q ss_conf 59999938999999997899199997899823467324798678999989999899983898099997789995478842
Q 002495 638 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 717 (915)
Q Consensus 638 V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~ 717 (915)
...+++++++.++++....+.|++++..+...+..... .....++++.++++++++-..+..+.+++...........
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~- 136 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF- 136 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC-
T ss_pred CEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEEEEE-EEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEE-
T ss_conf 40899938998898631000035542112000000100-0000000245532057503355532112322220122320-
Q ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEE
Q ss_conf 5788758999748999199998189819999947990578862---6810799913999899998499299998899608
Q 002495 718 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 794 (915)
Q Consensus 718 ~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~---~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~ 794 (915)
.......++++.+++. ++++...++.|..++........... .....+++.+++..+++....+.|..++......
T Consensus 137 ~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~ 215 (260)
T d1rwia_ 137 TGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 215 (260)
T ss_dssp CSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC
T ss_pred CCCCCCCEEEECCCCC-EEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEE
T ss_conf 3667752054548998-864102564332223431001222101147876312310001343214899899996999769
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 9995179998479999299999999
Q 002495 795 RLSLQGHTKPIDSVCWDPSGELLAS 819 (915)
Q Consensus 795 ~~~l~~h~~~V~si~~spdg~~las 819 (915)
.......-.....|++++++.++++
T Consensus 216 ~~~~~~~~~~P~~i~~d~~g~l~va 240 (260)
T d1rwia_ 216 TVLPFTGLNTPLAVAVDSDRTVYVA 240 (260)
T ss_dssp EECCCCSCCCEEEEEECTTCCEEEE
T ss_pred EEECCCCCCCEEEEEEECCCCEEEE
T ss_conf 9970699898179999089999999
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=2.9e-06 Score=62.11 Aligned_cols=260 Identities=10% Similarity=0.078 Sum_probs=104.9
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCCE-----------------EEEEECCCCCEEEEEE
Q ss_conf 9985999993899999999789919999789982346732-479867-----------------8999989999899983
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLI-----------------TDVRFSPSMPRLATSS 696 (915)
Q Consensus 635 ~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~-~h~~~V-----------------~~i~fspdg~~Lasgs 696 (915)
...+....|||||+.||... ++.|.+.+...+..+.... +....| .++.|+|||++||...
T Consensus 113 ~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 113 NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred CCCCCEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCCEEEEEE
T ss_conf 64311002426785699996-13299995489965897112676604436643100123036643489779898689999
Q ss_pred C-CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---------CCEEE
Q ss_conf 8-9809999778999547884257887589997489991999981898199999479905788626---------81079
Q 002495 697 F-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---------GTAQM 766 (915)
Q Consensus 697 ~-Dg~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---------~~~~i 766 (915)
. +..|..+.+..... .....+..+.+-.-+... ....+.++|+..+........ -...+
T Consensus 192 ~D~s~V~~~~~~~~~~------~~~p~~~~~~Yp~~G~~n-----p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~ 260 (465)
T d1xfda1 192 INDSRVPIMELPTYTG------SIYPTVKPYHYPKAGSEN-----PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV 260 (465)
T ss_dssp EECTTSCEEEECCCSS------SSSCCCEEEECCBTTSCC-----CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE
T ss_pred ECCCCCCEEECCCCCC------CCCCEEEEEECCCCCCCC-----CCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEE
T ss_conf 5366661464123445------444313345302568889-----72137998368981789995257676666304566
Q ss_pred EEECCCCEEEEEEC-C---CEEEEEECCCCEEEEEECCC-CCCE----EEEEECCCCCEEEE--EE-C---CEEEEEECC
Q ss_conf 99139998999984-9---92999988996089995179-9984----79999299999999--94-9---909999878
Q 002495 767 RFQPHLGRYLAAAA-E---NVVSILDAETQACRLSLQGH-TKPI----DSVCWDPSGELLAS--VS-E---DSVRVWTVG 831 (915)
Q Consensus 767 ~~sp~~~~ll~~~~-d---g~I~i~D~~t~~~~~~l~~h-~~~V----~si~~spdg~~las--~s-~---d~I~iwdl~ 831 (915)
.|.+++..++.... + ..|.++|..++++...+... ..+| ....|+++|+.++. .+ . +.++.+++.
T Consensus 261 ~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~ 340 (465)
T d1xfda1 261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS 340 (465)
T ss_dssp EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred EECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEEECCCCCEEEEEEC
T ss_conf 87579938999974100301379970799927877897278517356786057468980577776543166716899831
Q ss_pred CC---CCCCEEEEECCCCCCEEEE-EEECCCCEEEEEECCC-----EEEEEECCCCCEE---E-ECCCCCCEEEEEEECC
Q ss_conf 89---9861388831499853999-9917999899998698-----0999988999289---9-8156898699999379
Q 002495 832 SG---SEGECVHELSCNGNKFHSC-VFHPTYPSLLVIGCYQ-----SLELWNMSENKTM---T-LTAHEGLIAALAVSTE 898 (915)
Q Consensus 832 s~---~~~~~i~~~~~~~~~i~~i-~~spdg~~lisgs~dg-----~I~iwd~~~~~~~---~-~~~h~~~V~~ia~spd 898 (915)
.. .....+..+....-.|..+ .|+.+++.|+..+... .|+-.++...... + ..........+.|+|+
T Consensus 341 ~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~ 420 (465)
T d1xfda1 341 SSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHS 420 (465)
T ss_dssp CSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTT
T ss_pred CCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEEEECCC
T ss_conf 56666788626982269921997789838999999999689998268999977899860553144678898799999999
Q ss_pred CCEEEEEE
Q ss_conf 99999996
Q 002495 899 TGYVASAS 906 (915)
Q Consensus 899 g~~Lasgs 906 (915)
+++++..+
T Consensus 421 ~~y~v~~~ 428 (465)
T d1xfda1 421 MDFFLLKC 428 (465)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEE
T ss_conf 99999980
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=4.6e-06 Score=60.46 Aligned_cols=235 Identities=12% Similarity=0.149 Sum_probs=124.7
Q ss_pred EEEEECCCCCEEEEEEC-CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEE-
Q ss_conf 99999389999999978-9919999789982346732479867899998999989998389809999778999547884-
Q 002495 639 ICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF- 716 (915)
Q Consensus 639 ~~iafspdg~~Latgs~-Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~- 716 (915)
.++-|||||++||.... +..|..+.+.... ......+..+.+-.-|.... ...+.++|++.+.......
T Consensus 176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~-----~~~~p~~~~~~Yp~~G~~np----~~~l~v~d~~~~~~~~~~~~ 246 (465)
T d1xfda1 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPKAGSENP----SISLHVIGLNGPTHDLEMMP 246 (465)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCBTTSCCC----EEEEEEEESSSSCCCEECCC
T ss_pred CEEEECCCCCEEEEEEECCCCCCEEECCCCC-----CCCCCEEEEEECCCCCCCCC----CEEEEEEECCCCCEEEEEEC
T ss_conf 3489779898689999536666146412344-----54443133453025688897----21379983689817899952
Q ss_pred ----CCCCCCEEEEEECCCCCEEEEEEECC---CCEEEEECCCCEEEEEEECC--------CEEEEEECCCCEEEE--EE
Q ss_conf ----25788758999748999199998189---81999994799057886268--------107999139998999--98
Q 002495 717 ----MGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTRVFKGG--------TAQMRFQPHLGRYLA--AA 779 (915)
Q Consensus 717 ----~~h~~~V~si~fsp~~~~ll~sgs~D---g~I~iwdi~~~~~~~~~~~~--------~~~i~~sp~~~~ll~--~~ 779 (915)
......+..+.|.+++..++.....+ ..|.++|..++++...+... .....|.+++..++. ..
T Consensus 247 ~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~s 326 (465)
T d1xfda1 247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (465)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEE
T ss_conf 57676666304566875799389999741003013799707999278778972785173567860574689805777765
Q ss_pred C-C--CEEEEEECC------CCEEEEEECCCCCCEEEE-EECCCCCEEEE-EECC---E--EEEEECCCCCCCCEEEEEC
Q ss_conf 4-9--929999889------960899951799984799-99299999999-9499---0--9999878899861388831
Q 002495 780 A-E--NVVSILDAE------TQACRLSLQGHTKPIDSV-CWDPSGELLAS-VSED---S--VRVWTVGSGSEGECVHELS 843 (915)
Q Consensus 780 ~-d--g~I~i~D~~------t~~~~~~l~~h~~~V~si-~~spdg~~las-~s~d---~--I~iwdl~s~~~~~~i~~~~ 843 (915)
. + +.++.+++. .+..+..+....-.|..+ .|+.+++.|+. +..+ . ++-.++..+....|+....
T Consensus 327 e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~ 406 (465)
T d1xfda1 327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDL 406 (465)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTS
T ss_pred EECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCC
T ss_conf 43166716899831566667886269822699219977898389999999996899982689999778998605531446
Q ss_pred CCCCCEEEEEEECCCCEEEEEECC---CEEEEEECCCCCEEE
Q ss_conf 499853999991799989999869---809999889992899
Q 002495 844 CNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMT 882 (915)
Q Consensus 844 ~~~~~i~~i~~spdg~~lisgs~d---g~I~iwd~~~~~~~~ 882 (915)
........+.|+|++.+++..+.. -.+.+++..+++.+.
T Consensus 407 ~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~ 448 (465)
T d1xfda1 407 VENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMF 448 (465)
T ss_dssp SSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 788987999999999999998006999849999999997999
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.88 E-value=6e-06 Score=59.54 Aligned_cols=236 Identities=12% Similarity=0.106 Sum_probs=122.2
Q ss_pred CCCCEEEEEECCCCCEEEEEEC-------CCCEEEEECCCCCEEEEECCC----CCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 9998599999389999999978-------991999978998234673247----98678999989999899983898099
Q 002495 634 STSKVICCHFSSDGKLLATGGH-------DKKAVLWHTDTLKSKTNLEEH----SSLITDVRFSPSMPRLATSSFDKTVR 702 (915)
Q Consensus 634 H~~~V~~iafspdg~~Latgs~-------Dg~I~iwd~~~~~~~~~l~~h----~~~V~~i~fspdg~~Lasgs~Dg~I~ 702 (915)
.-.....++|.++|+++++... ++.|..||.++.......... ...-..+.|.+++..|+++.....|.
T Consensus 16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~ 95 (314)
T d1pjxa_ 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred CCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEE
T ss_conf 99897173996999999998754023452999999989999599997776556788530699907999899997798399
Q ss_pred EEECCCCCCEEEEECC-CC----CCEEEEEECCCCCEEEEEEEC---------------CCCEEEEECCCCEEEEEEE--
Q ss_conf 9977899954788425-78----875899974899919999818---------------9819999947990578862--
Q 002495 703 VWDADNPGYSLRTFMG-HS----ASVMSLDFHPNKDDLICSCDG---------------DGEIRYWSINNGSCTRVFK-- 760 (915)
Q Consensus 703 iwdl~~~~~~~~~~~~-h~----~~V~si~fsp~~~~ll~sgs~---------------Dg~I~iwdi~~~~~~~~~~-- 760 (915)
.++.+. . ....+.. .. ...+.+++.+++..++ +-.. +|.|+.++.. ++......
T Consensus 96 ~~~~~g-~-~~~~~~~~~~g~~~~~pndl~~d~~G~lyv-td~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~ 171 (314)
T d1pjxa_ 96 VVQTDG-T-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF 171 (314)
T ss_dssp EEETTS-C-EEECCSBCTTSCBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE
T ss_pred EEECCC-C-EEEEEECCCCCCCCCCCCEEEECCCCCEEE-ECCCCCCCCCCCCCEECCCCCEEEEEEEC-CCEEEEECCC
T ss_conf 994777-4-799973343245457872789888998999-14866754320110002688438999525-7403750785
Q ss_pred CCCEEEEEECCCC----EEEEE-ECCCEEEEEECCCCEEE------EEECC-CCCCEEEEEECCCCCEEEEEECC-EEEE
Q ss_conf 6810799913999----89999-84992999988996089------99517-99984799992999999999499-0999
Q 002495 761 GGTAQMRFQPHLG----RYLAA-AAENVVSILDAETQACR------LSLQG-HTKPIDSVCWDPSGELLASVSED-SVRV 827 (915)
Q Consensus 761 ~~~~~i~~sp~~~----~ll~~-~~dg~I~i~D~~t~~~~------~~l~~-h~~~V~si~~spdg~~las~s~d-~I~i 827 (915)
.....+.|++++. .++++ ...+.|+.||+.....+ ..+.. .......++++.+|+++++.... .|.+
T Consensus 172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~ 251 (314)
T d1pjxa_ 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEEE
T ss_conf 32213699788776303799986024311776116765430156899713356664102578347857999827999999
Q ss_pred EECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECC
Q ss_conf 98788998613888314998539999917999899998-69809999889
Q 002495 828 WTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMS 876 (915)
Q Consensus 828 wdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs-~dg~I~iwd~~ 876 (915)
||...+ ..+..+.......++++|.++++.|++.. .++.|..+++.
T Consensus 252 ~dp~~g---~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 252 FGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp ECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EECCCC---EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 969999---79999979999878999928989999998789919999789
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.77 E-value=1.3e-05 Score=56.65 Aligned_cols=189 Identities=13% Similarity=0.077 Sum_probs=105.1
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC-EEEEE--CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 599985999993899999999789919999789982-34673--247986789999899998999838980999977899
Q 002495 633 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 709 (915)
Q Consensus 633 ~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~-~~~~l--~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~ 709 (915)
.....+.+++|++||+++++...++.+.+|+..... ....+ .........+.+.+++.++++.+.++.+..++....
T Consensus 65 ~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 65 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCC
T ss_conf 17998536898677886998328953788871011110121023578632216677157978750356554102421687
Q ss_pred CCEEEEEC---------CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEE-----EECCCEEEEEECCCCEE
Q ss_conf 95478842---------57887589997489991999981898199999479905788-----62681079991399989
Q 002495 710 GYSLRTFM---------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FKGGTAQMRFQPHLGRY 775 (915)
Q Consensus 710 ~~~~~~~~---------~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~-----~~~~~~~i~~sp~~~~l 775 (915)
...+.... ........+.+. +..++++....+.|+.+++........ .......+++.+++..+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~ 222 (302)
T d2p4oa1 145 SGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLY 222 (302)
T ss_dssp EEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEE
T ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCCC--CCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEE
T ss_conf 30367518864014315763224320116--9830440378876986344333323453101589987523787999999
Q ss_pred EEEECCCEEEEEECCCCEE-EEEECCCCCCEEEEEE---CCCCCEEEEEECC
Q ss_conf 9998499299998899608-9995179998479999---2999999999499
Q 002495 776 LAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW---DPSGELLASVSED 823 (915)
Q Consensus 776 l~~~~dg~I~i~D~~t~~~-~~~l~~h~~~V~si~~---spdg~~las~s~d 823 (915)
++...++.|..++...... +......-...++++| .+|++.|++++..
T Consensus 223 va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 223 GATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EEECCCCCEEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCCEEEEECCC
T ss_conf 9974899189987899789999637898882489970878878989999889
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.75 E-value=1.5e-05 Score=56.30 Aligned_cols=229 Identities=10% Similarity=0.133 Sum_probs=108.1
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC------CCCCEEEEEECCCCC-EEEEE-ECCCEEEEEECCC
Q ss_conf 859999938999999997899199997899823467324------798678999989999-89998-3898099997789
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE------HSSLITDVRFSPSMP-RLATS-SFDKTVRVWDADN 708 (915)
Q Consensus 637 ~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~------h~~~V~~i~fspdg~-~Lasg-s~Dg~I~iwdl~~ 708 (915)
....++++++++++++-..++.|++||.+ ++.+..+.. ....-..+.+..+.. .+++. +.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC-
T ss_conf 90079994999899997998989999699-9999981665788664226630001234455200004775310000025-
Q ss_pred CCCEEEEEC-CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC-----CCEEEEEECCCCEEEEEECCC
Q ss_conf 995478842-57887589997489991999981898199999479905788626-----810799913999899998499
Q 002495 709 PGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAEN 782 (915)
Q Consensus 709 ~~~~~~~~~-~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~-----~~~~i~~sp~~~~ll~~~~dg 782 (915)
+.....+. ........+++.+++. ++++....+.+.+++.. ++.+..+.. ....+.+.+++..+++....+
T Consensus 102 -g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~ 178 (279)
T d1q7fa_ 102 -GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH 178 (279)
T ss_dssp -SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred -CCCEEECCCCCCCCCCEECCCCCCC-EEEEEECCCEEEEECCC-CCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCC
T ss_conf -6302403888642542000014784-79996326325676268-75010022001025662432012001786201355
Q ss_pred EEEEEECCCCEEEEEEC--CCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEEC--CCCCCEEEEEEEC
Q ss_conf 29999889960899951--799984799992999999999499--09999878899861388831--4998539999917
Q 002495 783 VVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELS--CNGNKFHSCVFHP 856 (915)
Q Consensus 783 ~I~i~D~~t~~~~~~l~--~h~~~V~si~~spdg~~las~s~d--~I~iwdl~s~~~~~~i~~~~--~~~~~i~~i~~sp 856 (915)
.|.+||... +.+.++. +.......|+++++|+++++-..+ .|.+|+.. + +.+..+. ........+++.+
T Consensus 179 ~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G---~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 179 CVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp EEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEEEEET
T ss_pred CEEEEECCC-CEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-C---CEEEEEECCCCCCCEEEEEEEC
T ss_conf 100230479-4445301132114876232314786999978998089999999-9---9999996888889883799908
Q ss_pred CCCEEEEEECCCEEEEEECC
Q ss_conf 99989999869809999889
Q 002495 857 TYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 857 dg~~lisgs~dg~I~iwd~~ 876 (915)
++. |+++..++.|++|...
T Consensus 254 dG~-l~V~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 254 DGS-VVLASKDYRLYIYRYV 272 (279)
T ss_dssp TTE-EEEEETTTEEEEEECS
T ss_pred CCC-EEEEECCCEEEEEEEE
T ss_conf 991-9999189969998722
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.74 E-value=1.6e-05 Score=56.09 Aligned_cols=228 Identities=13% Similarity=0.116 Sum_probs=112.7
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC--CEEEEEECCCCCC
Q ss_conf 99985999993899999999789919999789982346732479867899998999989998389--8099997789995
Q 002495 634 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGY 711 (915)
Q Consensus 634 H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D--g~I~iwdl~~~~~ 711 (915)
....+..++|.++|+++++-...+.|+.|+.+.......+.........++|.++++++++...+ ....++.+.....
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CCCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCC
T ss_conf 88674707899999999997799999999899995999994899870389999999999995689731104998738996
Q ss_pred EEEEECCC---CCCEEEEEECCCCCEEEEEEEC------CCCEEEEECCCCEEEEEEE--CCCEEEEEECCCCEEEEEEC
Q ss_conf 47884257---8875899974899919999818------9819999947990578862--68107999139998999984
Q 002495 712 SLRTFMGH---SASVMSLDFHPNKDDLICSCDG------DGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA 780 (915)
Q Consensus 712 ~~~~~~~h---~~~V~si~fsp~~~~ll~sgs~------Dg~I~iwdi~~~~~~~~~~--~~~~~i~~sp~~~~ll~~~~ 780 (915)
.+..+..+ ...+..+.+.+++. ++++... .+.+..++........... .....+.|+++++.++++..
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~ 196 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET 196 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred EEEEECCCCCCCCCCCCEEEEECCC-EEECCCCCCCCCCCCEEEEEECCCCEEEEEEECCCEEEEEEECCCCCEEEEECC
T ss_conf 3644426777555875226773065-320013540025742157884166335788612330100010122212787404
Q ss_pred -CCEEEEEECCCC-E---EE----EEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECC------
Q ss_conf -992999988996-0---89----9951799984799992999999999499-099998788998613888314------
Q 002495 781 -ENVVSILDAETQ-A---CR----LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC------ 844 (915)
Q Consensus 781 -dg~I~i~D~~t~-~---~~----~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~------ 844 (915)
.+.|+.||+... . .. ............++++.+|++.++.... .|.+|+- .+ +.+.++..
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G---~~l~~i~~P~~~~~ 272 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG---YPIGQILIPGRDEG 272 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS---CEEEEEECTTGGGT
T ss_pred CCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CC---CEEEEEECCCCCCC
T ss_conf 689147999769983620246333312577641036417389999999848998999979-99---59889968875778
Q ss_pred CCCCEEEEEEECCCCEEEEEEC
Q ss_conf 9985399999179998999986
Q 002495 845 NGNKFHSCVFHPTYPSLLVIGC 866 (915)
Q Consensus 845 ~~~~i~~i~~spdg~~lisgs~ 866 (915)
+...+++++|.++...+++...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 273 HMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp CSCBCCEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEECC
T ss_conf 6750466778079988999857
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.71 E-value=2e-05 Score=55.28 Aligned_cols=193 Identities=11% Similarity=0.122 Sum_probs=120.9
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCC----CCEEEEEECCCCCEEEEEEC---------------
Q ss_conf 85999993899999999789919999789982346732479----86789999899998999838---------------
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS----SLITDVRFSPSMPRLATSSF--------------- 697 (915)
Q Consensus 637 ~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~----~~V~~i~fspdg~~Lasgs~--------------- 697 (915)
.-..++|.+++..|+++.....|..++.+............ ...+++.+.++|.+.++-..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCEECCC
T ss_conf 53069990799989999779839999477747999733432454578727898889989991486675432011000268
Q ss_pred CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCC----EEEEEEECCCCEEEEECCCCEEEE------EEEC----CC
Q ss_conf 980999977899954788425788758999748999----199998189819999947990578------8626----81
Q 002495 698 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD----DLICSCDGDGEIRYWSINNGSCTR------VFKG----GT 763 (915)
Q Consensus 698 Dg~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~----~ll~sgs~Dg~I~iwdi~~~~~~~------~~~~----~~ 763 (915)
+|.|..++.+ +....... .....+.++|+++++ .++++-...+.|+.|++.....+. .+.. ..
T Consensus 152 ~G~v~~~~~d--g~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p 228 (314)
T d1pjxa_ 152 FGSIYCFTTD--GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA 228 (314)
T ss_dssp CEEEEEECTT--SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred CCEEEEEEEC--CCEEEEEC-CCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCC
T ss_conf 8438999525--74037507-85322136997887763037999860243117761167654301568997133566641
Q ss_pred EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEE-ECC-EEEEEECCC
Q ss_conf 079991399989999849929999889960899951799984799992999999999-499-099998788
Q 002495 764 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGS 832 (915)
Q Consensus 764 ~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~-s~d-~I~iwdl~s 832 (915)
..+++..+++.+++....+.|.+||.+.+..+..+.......++++|.++++.|++. +.+ .|..+++..
T Consensus 229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCC
T ss_conf 02578347857999827999999969999799999799998789999289899999987899199997899
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.56 E-value=4.6e-05 Score=52.22 Aligned_cols=188 Identities=11% Similarity=0.054 Sum_probs=114.0
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECC----CCEEEEECCCCCEEEEECC--CCCCEEEEEECCCCCEEEEEEC------CC
Q ss_conf 1599985999993899999999789----9199997899823467324--7986789999899998999838------98
Q 002495 632 RASTSKVICCHFSSDGKLLATGGHD----KKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSF------DK 699 (915)
Q Consensus 632 ~~H~~~V~~iafspdg~~Latgs~D----g~I~iwd~~~~~~~~~l~~--h~~~V~~i~fspdg~~Lasgs~------Dg 699 (915)
.........++|++||+++++...+ +.|...+............ .......+.+.++|++.++... .+
T Consensus 78 ~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g 157 (319)
T d2dg1a1 78 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 157 (319)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred ECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCC
T ss_conf 48998703899999999999956897311049987389963644426777555875226773065320013540025742
Q ss_pred EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCE-EEEEE--------E--CCCEEEEE
Q ss_conf 0999977899954788425788758999748999199998189819999947990-57886--------2--68107999
Q 002495 700 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVF--------K--GGTAQMRF 768 (915)
Q Consensus 700 ~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~-~~~~~--------~--~~~~~i~~ 768 (915)
.+..++.+ +..+..+...-...+.|+|+++++.++++-...+.|+.|++.... ..... . .....+++
T Consensus 158 ~v~~~~~d--g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~v 235 (319)
T d2dg1a1 158 GVYYVSPD--FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI 235 (319)
T ss_dssp EEEEECTT--SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred EEEEEECC--CCEEEEEEECCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEE
T ss_conf 15788416--6335788612330100010122212787404689147999769983620246333312577641036417
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCEEEEEECC------CCCCEEEEEECCCCCEEEEEEC
Q ss_conf 13999899998499299998899608999517------9998479999299999999949
Q 002495 769 QPHLGRYLAAAAENVVSILDAETQACRLSLQG------HTKPIDSVCWDPSGELLASVSE 822 (915)
Q Consensus 769 sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~------h~~~V~si~~spdg~~las~s~ 822 (915)
..+++.+++....+.|.+||. .++.+.++.. +...+++++|.++...+++...
T Consensus 236 D~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 236 DSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp BTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECC
T ss_conf 389999999848998999979-99598899688757786750466778079988999857
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.53 E-value=5.5e-05 Score=51.54 Aligned_cols=227 Identities=13% Similarity=0.134 Sum_probs=134.3
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECC------CCCCEEEEEECCCCCEEEEEE-ECCCCEEEEECC
Q ss_conf 6789999899998999838980999977899954788425------788758999748999199998-189819999947
Q 002495 679 LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG------HSASVMSLDFHPNKDDLICSC-DGDGEIRYWSIN 751 (915)
Q Consensus 679 ~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~------h~~~V~si~fsp~~~~ll~sg-s~Dg~I~iwdi~ 751 (915)
....|+++++++++++-.....|++||.+ +..++.+.. .......+.+..+...++++. +.++.|.+++.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~--G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 100 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 100 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-
T ss_conf 90079994999899997998989999699--999998166578866422663000123445520000477531000002-
Q ss_pred CCEEEEEEEC----CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE--CCCCCCEEEEEECCCCCEEEEEECC-E
Q ss_conf 9905788626----8107999139998999984992999988996089995--1799984799992999999999499-0
Q 002495 752 NGSCTRVFKG----GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL--QGHTKPIDSVCWDPSGELLASVSED-S 824 (915)
Q Consensus 752 ~~~~~~~~~~----~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l--~~h~~~V~si~~spdg~~las~s~d-~ 824 (915)
.+.....+.. ....+.+.+++..+++....+.+.+++.. ++.+..+ ..+......+++.+++.++++.... .
T Consensus 101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred CCCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECCC-CCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCC
T ss_conf 5630240388864254200001478479996326325676268-750100220010256624320120017862013551
Q ss_pred EEEEECCCCCCCCEEEEEC--CCCCCEEEEEEECCCCEEEEEECC-CEEEEEECCCCCEE-EEC--CCCCCEEEEEEECC
Q ss_conf 9999878899861388831--499853999991799989999869-80999988999289-981--56898699999379
Q 002495 825 VRVWTVGSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM-TLT--AHEGLIAALAVSTE 898 (915)
Q Consensus 825 I~iwdl~s~~~~~~i~~~~--~~~~~i~~i~~spdg~~lisgs~d-g~I~iwd~~~~~~~-~~~--~h~~~V~~ia~spd 898 (915)
|++|+... ..+..+. +.......+++.++++.+++-..+ ..|.+|+.. ++.+ .+. ........+++.++
T Consensus 180 V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 180 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp EEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETT
T ss_pred EEEEECCC----CEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC-CCEEEEEECCCCCCCEEEEEEECC
T ss_conf 00230479----4445301132114876232314786999978998089999999-999999968888898837999089
Q ss_pred CCEEEEEECCCCEEECC
Q ss_conf 99999996698299909
Q 002495 899 TGYVASASHDKFVKLWK 915 (915)
Q Consensus 899 g~~Lasgs~Dg~I~IWd 915 (915)
+.+++ ++.+.+|++|+
T Consensus 255 G~l~V-~~~n~~v~~fr 270 (279)
T d1q7fa_ 255 GSVVL-ASKDYRLYIYR 270 (279)
T ss_dssp TEEEE-EETTTEEEEEE
T ss_pred CCEEE-EECCCEEEEEE
T ss_conf 91999-91899699987
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.52 E-value=5.8e-05 Score=51.36 Aligned_cols=230 Identities=9% Similarity=0.059 Sum_probs=115.0
Q ss_pred ECCC--CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC-CC-----EEEEEECCCCCCEEE
Q ss_conf 9389--999999978991999978998234673247986789999899998999838-98-----099997789995478
Q 002495 643 FSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DK-----TVRVWDADNPGYSLR 714 (915)
Q Consensus 643 fspd--g~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~-Dg-----~I~iwdl~~~~~~~~ 714 (915)
.+|| |+.+|..+ ++.|.+.|+..++. ..+..+...+...+|+|||+.||.... ++ .|.+++... + ..+
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~-g-~~~ 81 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN-G-EIK 81 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT-T-EEE
T ss_pred CCCCCCCCEEEEEE-CCCEEEEECCCCCE-EEEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECC-C-CEE
T ss_conf 58887999999990-99689998999987-99766998526779878999899998628987722899998259-9-528
Q ss_pred EECC-------CCCCEEEEEECCCCCEEEEEEECC-----CCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEECC-
Q ss_conf 8425-------788758999748999199998189-----819999947990578862681079991399989999849-
Q 002495 715 TFMG-------HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAE- 781 (915)
Q Consensus 715 ~~~~-------h~~~V~si~fsp~~~~ll~sgs~D-----g~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~d- 781 (915)
.+.. .........|+|++..++++...+ ..+..++.............. ...+.+++..++.....
T Consensus 82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 160 (281)
T d1k32a2 82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPA-THILFADGRRVIGRNTFE 160 (281)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSC-SEEEEETTEEEEEESCSC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCC-CEEEECCCCEEEEEECCC
T ss_conf 8641688754764443431027988779999713787652024651587760688017865-234646998498862046
Q ss_pred -----------CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEECCCCCC
Q ss_conf -----------929999889960899951799984799992999999999499--0999987889986138883149985
Q 002495 782 -----------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNK 848 (915)
Q Consensus 782 -----------g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~ 848 (915)
....++........... ..........+.++..++.....+ .|.++|+..+.. + .+... ..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~---~lt~~-~~ 234 (281)
T d1k32a2 161 LPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-R---KHTSF-TD 234 (281)
T ss_dssp CTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-E---ECCCC-CS
T ss_pred CCEEEEECCCCCCEEEEECCCCCEEECC-CCCCCCCEEEEECCCCCEECCCCCCCCEEEEECCCCCE-E---EEECC-CC
T ss_conf 6404442058862044411366122404-77666421331035320001134552128996899965-9---81058-98
Q ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEC
Q ss_conf 399999179998999986980999988999289981
Q 002495 849 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT 884 (915)
Q Consensus 849 i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~~~~ 884 (915)
.....|+|+++.|+.. .++.|+++|+.+++...+.
T Consensus 235 ~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 235 YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred CCCCCCCCCCCEEEEE-ECCEEEEEECCCCCEEEEC
T ss_conf 6443286798999998-5999999989999878842
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.07 E-value=0.00047 Score=43.85 Aligned_cols=197 Identities=8% Similarity=0.056 Sum_probs=104.4
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEEC-CC-----CEEEEECCCCCEEEEEC------CCCCCEEEEEECCCCCEEEEEE
Q ss_conf 574159998599999389999999978-99-----19999789982346732------4798678999989999899983
Q 002495 629 NSVRASTSKVICCHFSSDGKLLATGGH-DK-----KAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSS 696 (915)
Q Consensus 629 ~~l~~H~~~V~~iafspdg~~Latgs~-Dg-----~I~iwd~~~~~~~~~l~------~h~~~V~~i~fspdg~~Lasgs 696 (915)
..|..+.+.+...+|||||+.||.... ++ .|.+++...++...... ........+.|+|+++.|+...
T Consensus 34 ~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 34 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EEEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99766998526779878999899998628987722899998259952886416887547644434310279887799997
Q ss_pred CC------CEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCC-----------CEEEEECCCCEEEEEE
Q ss_conf 89------809999778999547884257887589997489991999981898-----------1999994799057886
Q 002495 697 FD------KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----------EIRYWSINNGSCTRVF 759 (915)
Q Consensus 697 ~D------g~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg-----------~I~iwdi~~~~~~~~~ 759 (915)
.. ..+.+.+... ....... ......+ +.+++..+++....+. ...++...........
T Consensus 114 ~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (281)
T d1k32a2 114 AMQPFSSMTCLYRVENDG--INFVPLN--LGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV 188 (281)
T ss_dssp TTSSSTTCCEEEEEEGGG--TEEEECC--SCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred CCCCCCCCEEEEEECCCC--CEEEEEC--CCCCCEE-EECCCCEEEEEECCCCCEEEEECCCCCCEEEEECCCCCEEECC
T ss_conf 137876520246515877--6068801--7865234-6469984988620466404442058862044411366122404
Q ss_pred ECC--CEEEEEECCCCEEEEEEC---CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCC
Q ss_conf 268--107999139998999984---992999988996089995179998479999299999999949909999878899
Q 002495 760 KGG--TAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 834 (915)
Q Consensus 760 ~~~--~~~i~~sp~~~~ll~~~~---dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d~I~iwdl~s~~ 834 (915)
... .....+.. ..++.... ...|+++|+............ ......|+|||+.|+......|+++|+.+++
T Consensus 189 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~--~~~~~~~SpDG~~I~f~~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 189 DMSTHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFSKGGSIYIFNPDTEK 264 (281)
T ss_dssp CCSSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred CCCCCCCEEEEEC--CCCCEECCCCCCCCEEEEECCCCCEEEEECCC--CCCCCCCCCCCCEEEEEECCEEEEEECCCCC
T ss_conf 7766642133103--53200011345521289968999659810589--8644328679899999859999999899998
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.76 E-value=0.0014 Score=39.84 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=40.0
Q ss_pred EEEEEECCCCCEEEEEECC-CCEEEEECCCCCEEEE--ECCCCCCEEEEEECCCCCEEEEEECC------CEEEEEECCC
Q ss_conf 5999993899999999789-9199997899823467--32479867899998999989998389------8099997789
Q 002495 638 VICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADN 708 (915)
Q Consensus 638 V~~iafspdg~~Latgs~D-g~I~iwd~~~~~~~~~--l~~h~~~V~~i~fspdg~~Lasgs~D------g~I~iwdl~~ 708 (915)
..+.++.+++++++.|+.+ ..+.+||..+..-... +.... .-.+.+...|+++++.++.+ ..+.+||..+
T Consensus 78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred EEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCC-CCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCC
T ss_conf 5689994688689863688862167567557442156566421-013035531782665213663335432056634888
Q ss_pred C
Q ss_conf 9
Q 002495 709 P 709 (915)
Q Consensus 709 ~ 709 (915)
.
T Consensus 157 ~ 157 (387)
T d1k3ia3 157 K 157 (387)
T ss_dssp T
T ss_pred C
T ss_conf 9
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.71 E-value=0.0017 Score=39.27 Aligned_cols=218 Identities=14% Similarity=0.122 Sum_probs=94.4
Q ss_pred EEEEECCC-CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEC
Q ss_conf 99999389-99999997899199997899823467324798678999989999899983898099997789995478842
Q 002495 639 ICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 717 (915)
Q Consensus 639 ~~iafspd-g~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~ 717 (915)
-+..|++. +.++.+--..+.|..||.++++. ..+. ....+.++.+..++.++++ +.+| |.++|..+ +.......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~-~~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~t-g~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRK-TVHA-LPFMGSALAKISDSKQLIA-SDDG-LFLRDTAT-GVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEE-CSSCEEEEEEEETTEEEEE-ETTE-EEEEETTT-CCEEEEEC
T ss_pred ECCEEECCCCEEEEEECCCCEEEEEECCCCEE-EEEE-CCCCCEEEEEECCCCEEEE-EECC-CEEEECCC-CEEEEEEE
T ss_conf 58759899999999987899999998998959-9998-9998179899659988999-7376-38950464-51357866
Q ss_pred C----CCCCEEEEEECCCCCEEEEEEEC---CCCEEEEECCCCEEEEEEEC--CCEEEEEECCCCEEEEEEC-CCEEEEE
Q ss_conf 5----78875899974899919999818---98199999479905788626--8107999139998999984-9929999
Q 002495 718 G----HSASVMSLDFHPNKDDLICSCDG---DGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSIL 787 (915)
Q Consensus 718 ~----h~~~V~si~fsp~~~~ll~sgs~---Dg~I~iwdi~~~~~~~~~~~--~~~~i~~sp~~~~ll~~~~-dg~I~i~ 787 (915)
. ....++.+.+.+++..++.+... .+.-.+|.+..++....... ....+.|++++..++.+.. .+.|+.|
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~ 175 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRV 175 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred EECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 40478766101357979999988742643133330576622996899865068764024658776689851566324676
Q ss_pred ECCCC--------EEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEE-CC
Q ss_conf 88996--------0899951799984799992999999999499-09999878899861388831499853999991-79
Q 002495 788 DAETQ--------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH-PT 857 (915)
Q Consensus 788 D~~t~--------~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~s-pd 857 (915)
++... .....+.+.......++++.+|++.++.... .|..||. .+ +.+..+......+++|+|- ++
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G---~~~~~i~lP~~~~T~~~FGG~d 251 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPAFIGPD 251 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEEEESTT
T ss_pred EECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECC-CC---CEEEEECCCCCCEEEEEEECCC
T ss_conf 4535555324535788416755566632678699998953207884688569-99---2866863899852798982899
Q ss_pred CCEEEEEE
Q ss_conf 99899998
Q 002495 858 YPSLLVIG 865 (915)
Q Consensus 858 g~~lisgs 865 (915)
.+.|++.+
T Consensus 252 ~~~LyvTt 259 (295)
T d2ghsa1 252 ASRLLVTS 259 (295)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
T ss_conf 99999997
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.69 E-value=0.0017 Score=39.13 Aligned_cols=180 Identities=17% Similarity=0.071 Sum_probs=96.9
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC----CCCCEEEEEECCCCCEEEEEEC----CCEEEEEEC
Q ss_conf 99859999938999999997899199997899823467324----7986789999899998999838----980999977
Q 002495 635 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRFSPSMPRLATSSF----DKTVRVWDA 706 (915)
Q Consensus 635 ~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~----h~~~V~~i~fspdg~~Lasgs~----Dg~I~iwdl 706 (915)
...+.++++..++.++++ +.+ .|.++|..+++....... ....++++.+.++|++.++... .+.-.+|.+
T Consensus 58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~ 135 (295)
T d2ghsa1 58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 135 (295)
T ss_dssp SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEE
T ss_conf 998179899659988999-737-638950464513578664047876610135797999998874264313333057662
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEE-----EEEE------ECCCEEEEEECCCCEE
Q ss_conf 8999547884257887589997489991999981898199999479905-----7886------2681079991399989
Q 002495 707 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-----TRVF------KGGTAQMRFQPHLGRY 775 (915)
Q Consensus 707 ~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~-----~~~~------~~~~~~i~~sp~~~~l 775 (915)
.. +....... .-.....++|++++..++++.+..+.|..|++..... ...+ .+....+++..+++..
T Consensus 136 ~~-g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW 213 (295)
T d2ghsa1 136 AK-GKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW 213 (295)
T ss_dssp ET-TEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred CC-CCEEEEEE-CCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEE
T ss_conf 29-96899865-06876402465877668985156632467645355553245357884167555666326786999989
Q ss_pred EEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEC-CCCCEEEE
Q ss_conf 999849929999889960899951799984799992-99999999
Q 002495 776 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD-PSGELLAS 819 (915)
Q Consensus 776 l~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~s-pdg~~las 819 (915)
++.-..+.|..||. +++.+..+......+++++|- ++.+.|++
T Consensus 214 va~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Lyv 257 (295)
T d2ghsa1 214 NARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLV 257 (295)
T ss_dssp EEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred EEEECCCCEEEECC-CCCEEEEECCCCCCEEEEEEECCCCCEEEE
T ss_conf 53207884688569-992866863899852798982899999999
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.69 E-value=0.0018 Score=39.09 Aligned_cols=229 Identities=13% Similarity=0.057 Sum_probs=111.1
Q ss_pred EEEECC---CCCEEEEEE-CCCCEEEEECCCCCEEEEECC-CCCCEEEEEECC--CCCEEEEEECCC-------------
Q ss_conf 999938---999999997-899199997899823467324-798678999989--999899983898-------------
Q 002495 640 CCHFSS---DGKLLATGG-HDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSP--SMPRLATSSFDK------------- 699 (915)
Q Consensus 640 ~iafsp---dg~~Latgs-~Dg~I~iwd~~~~~~~~~l~~-h~~~V~~i~fsp--dg~~Lasgs~Dg------------- 699 (915)
.++|.. ||++|++.. .+..|.+.|+++.++...+.. ....+..++..+ +..|+++.+.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCH
T ss_conf 51444885551289997589863899988540566799667887775012025797479973676544459998513240
Q ss_pred -----EEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECC-CCEEEEECCCCEEEEE--EECCCEEEEEECC
Q ss_conf -----0999977899954788425788758999748999199998189-8199999479905788--6268107999139
Q 002495 700 -----TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRV--FKGGTAQMRFQPH 771 (915)
Q Consensus 700 -----~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~D-g~I~iwdi~~~~~~~~--~~~~~~~i~~sp~ 771 (915)
.+.++|.++ ........ .......++++++++.+++++... ..+.+.++.....-.. +.-.. ...+.++
T Consensus 169 ~~y~~~~t~ID~~t-m~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~r-ie~av~~ 245 (459)
T d1fwxa2 169 ANYVNVFTAVDADK-WEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE-IEKAIAA 245 (459)
T ss_dssp G-EEEEEEEEETTT-TEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH-HHHHHHH
T ss_pred HHCCEEEEEEECCC-CEEEEEEE-ECCCHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEECHHH-HHHHHHC
T ss_conf 11226899996677-66989964-089720153189999899971355688532222524541899963488-6876405
Q ss_pred CCEEEEEECCCEEEEEECCCC---EEEEEECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCC--------CCCCE
Q ss_conf 998999984992999988996---0899951799984799992999999999499--0999987889--------98613
Q 002495 772 LGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG--------SEGEC 838 (915)
Q Consensus 772 ~~~ll~~~~dg~I~i~D~~t~---~~~~~l~~h~~~V~si~~spdg~~las~s~d--~I~iwdl~s~--------~~~~~ 838 (915)
++.-. -+.+.+.|.++. ..+..+... .....+.++|||+++++++.- ++.|+|++.. ....+
T Consensus 246 Gk~~e----ingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 246 GDYQE----LNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp TCSEE----ETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred CCCEE----ECCCEEECCCCCCCCCEEEEEECC-CCCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCC
T ss_conf 99379----699466154236785203898658-9877338899997899938858957999822535665046884521
Q ss_pred EEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 88831499853999991799989999869809999889
Q 002495 839 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 876 (915)
Q Consensus 839 i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~ 876 (915)
+..-...+-......|...|....+.--|..|.-|++.
T Consensus 321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred EEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECC
T ss_conf 79611357676620338984299986123169997344
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.33 E-value=0.0047 Score=35.59 Aligned_cols=49 Identities=10% Similarity=-0.052 Sum_probs=32.5
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEECCCCCCE--EEEEEECCCC-EEEEE
Q ss_conf 9998999986980999988999289981568986--9999937999-99999
Q 002495 857 TYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLI--AALAVSTETG-YVASA 905 (915)
Q Consensus 857 dg~~lisgs~dg~I~iwd~~~~~~~~~~~h~~~V--~~ia~spdg~-~Lasg 905 (915)
.+..+++++.|+.++.+|.++++.+........+ .-+.|..+|+ ||++.
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~ 525 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEEEEEE
T ss_conf 6997999778996999999998687899899996515648988999999999
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.22 E-value=0.0059 Score=34.73 Aligned_cols=109 Identities=9% Similarity=-0.031 Sum_probs=58.0
Q ss_pred EECCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCC
Q ss_conf 415999859999938999999997-89919999789982346732479867899998999989998-3898099997789
Q 002495 631 VRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDADN 708 (915)
Q Consensus 631 l~~H~~~V~~iafspdg~~Latgs-~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~I~iwdl~~ 708 (915)
+..+...|.+++|+...+.|+.+. .++.|+..+++.......+......+.++++..-+..|+.+ ...+.|.+.+++.
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg 110 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCCCCEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCC
T ss_conf 12687757999998589999999899991999976658728988701264207999636886888426789799880588
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 99547884257887589997489991999981
Q 002495 709 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 740 (915)
Q Consensus 709 ~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs 740 (915)
.. ....+......+..+++.|....++.+..
T Consensus 111 ~~-~~~l~~~~l~~p~~l~vdp~~g~ly~t~~ 141 (263)
T d1npea_ 111 TQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141 (263)
T ss_dssp CS-CEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred CE-EEEEECCCCCCCCEEEEECCCCCEEEEEC
T ss_conf 16-77771256668727999256692799534
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.04 E-value=0.0085 Score=33.42 Aligned_cols=79 Identities=9% Similarity=0.202 Sum_probs=41.6
Q ss_pred EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCC-CEEEEEEECCCC-
Q ss_conf 0999987889986138883149985399999179998999986980999988999289-9815689-869999937999-
Q 002495 824 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAALAVSTETG- 900 (915)
Q Consensus 824 ~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~-~~~~h~~-~V~~ia~spdg~- 900 (915)
.+.-||+.++ +.+...... .....-.+.-.+..+++++.|+.++.||..+++++ .+....+ .-.-+.|..+|+
T Consensus 439 ~l~A~D~~tG---k~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq 514 (560)
T d1kv9a2 439 ALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (560)
T ss_dssp EEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CEEEEECCCC---EEEEECCCC-CCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 4688707788---373102578-888774059879989997789819999999985827998999955167799989999
Q ss_pred EEEEEE
Q ss_conf 999996
Q 002495 901 YVASAS 906 (915)
Q Consensus 901 ~Lasgs 906 (915)
||++..
T Consensus 515 yv~v~a 520 (560)
T d1kv9a2 515 YVAIMA 520 (560)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999991
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.65 E-value=0.016 Score=31.14 Aligned_cols=51 Identities=8% Similarity=-0.014 Sum_probs=31.5
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCCEE-EECCC-CCCEEEEEEECCCC-EEEEE
Q ss_conf 179998999986980999988999289-98156-89869999937999-99999
Q 002495 855 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETG-YVASA 905 (915)
Q Consensus 855 spdg~~lisgs~dg~I~iwd~~~~~~~-~~~~h-~~~V~~ia~spdg~-~Lasg 905 (915)
...+..+++++.|+.++.||.++++++ .+... ...-.-+.|..+|+ ||+..
T Consensus 481 sTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~ 534 (596)
T d1w6sa_ 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (596)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEEE
T ss_conf 866997999789995999999998483699899995407768998999999999
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.51 E-value=0.019 Score=30.47 Aligned_cols=243 Identities=9% Similarity=0.012 Sum_probs=148.5
Q ss_pred CCEEEEEECCCCEEEEECCCCC-----EEEEECCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCCEEEEECCCC
Q ss_conf 9999999789919999789982-----3467324798678999989999899983-898099997789995478842578
Q 002495 647 GKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHS 720 (915)
Q Consensus 647 g~~Latgs~Dg~I~iwd~~~~~-----~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~I~iwdl~~~~~~~~~~~~h~ 720 (915)
|.+|+.+. .+.|+-.+++... ....+..+...+.+++|......|+.+. .++.|+..+++. ......+....
T Consensus 1 ~~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g-~~~~~v~~~~~ 78 (263)
T d1npea_ 1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDL 78 (263)
T ss_dssp CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTC
T ss_pred CCEEEEEC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCEEEEEECCC-CCCEEEEEECC
T ss_conf 98999948-98299997888665544531001268775799999858999999989999199997665-87289887012
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEECC---CEEEEEECCCCEE
Q ss_conf 87589997489991999981898199999479905788626---81079991399989999849---9299998899608
Q 002495 721 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE---NVVSILDAETQAC 794 (915)
Q Consensus 721 ~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~d---g~I~i~D~~t~~~ 794 (915)
..+.++++...++.+.++-...+.|.+.++....+...+.. ....+.++|..+.++..... ..|...++.....
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~ 158 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred CCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCCC
T ss_conf 64207999636886888426789799880588167777125666872799925669279953489976899966789972
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEE
Q ss_conf 99951799984799992999999999499--099998788998613888314998539999917999899998-698099
Q 002495 795 RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLE 871 (915)
Q Consensus 795 ~~~l~~h~~~V~si~~spdg~~las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs-~dg~I~ 871 (915)
.......-.....+++++.+..|+.+... .|...++.... ....+.... ....+++. +.+|+... ..+.|.
T Consensus 159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~---~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~ 232 (263)
T d1npea_ 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---RRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVI 232 (263)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE---EEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCC---EEEEECCCC-CCEEEEEE--CCEEEEEECCCCEEE
T ss_conf 365530355553079950475899992899999999999997---699988999-86899999--999999999999799
Q ss_pred EEECCCCCEEEEC--CCCCCEEEEEEEC
Q ss_conf 9988999289981--5689869999937
Q 002495 872 LWNMSENKTMTLT--AHEGLIAALAVST 897 (915)
Q Consensus 872 iwd~~~~~~~~~~--~h~~~V~~ia~sp 897 (915)
..|..+++..... ........+++.+
T Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 233 AMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp EEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EEECCCCCCCEEECCCCCCCCCEEEEEC
T ss_conf 9989899510698988899856589838
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.49 E-value=0.02 Score=30.39 Aligned_cols=229 Identities=11% Similarity=0.074 Sum_probs=115.9
Q ss_pred CCCEEEEEECC--CCCEEEEEECC------------------CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 99859999938--99999999789------------------91999978998234673247986789999899998999
Q 002495 635 TSKVICCHFSS--DGKLLATGGHD------------------KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 694 (915)
Q Consensus 635 ~~~V~~iafsp--dg~~Latgs~D------------------g~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Las 694 (915)
...+..++..+ ...|++..+.+ +.+.++|.++.+....+... .....+.++++|+++++
T Consensus 131 ~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~ 209 (459)
T d1fwxa2 131 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFS 209 (459)
T ss_dssp CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEE
T ss_pred CCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCEEEEEEECCCCEEEEEEEEC-CCHHCCCCCCCCCEEEE
T ss_conf 87775012025797479973676544459998513240112268999966776698996408-97201531899998999
Q ss_pred EECCCE--EEEEECCCCCCEEEEECCCCCCEEEEEE------CCCCCEEEEEEECCCCEEEEECCCC---EEEEEEE--C
Q ss_conf 838980--9999778999547884257887589997------4899919999818981999994799---0578862--6
Q 002495 695 SSFDKT--VRVWDADNPGYSLRTFMGHSASVMSLDF------HPNKDDLICSCDGDGEIRYWSINNG---SCTRVFK--G 761 (915)
Q Consensus 695 gs~Dg~--I~iwdl~~~~~~~~~~~~h~~~V~si~f------sp~~~~ll~sgs~Dg~I~iwdi~~~---~~~~~~~--~ 761 (915)
.+.+.. +.+.++.. .. ...+....| .++++...+ +.+.+.|.+.. ..++.+. .
T Consensus 210 TsyNSE~g~~l~e~ta-~e--------~D~i~V~n~~rie~av~~Gk~~ei-----ngV~VVD~~~~~~~~v~~yIPVpK 275 (459)
T d1fwxa2 210 TSYNSEKGMTLPEMTA-AE--------MDHIVVFNIAEIEKAIAAGDYQEL-----NGVKVVDGRKEASSLFTRYIPIAN 275 (459)
T ss_dssp EESCTTCCSSHHHHTC-CS--------EEEEEEEEHHHHHHHHHHTCSEEE-----TTEEEEECSGG--CSSEEEEEEES
T ss_pred EECCCCCCCCHHHCCC-CC--------CEEEEEECHHHHHHHHHCCCCEEE-----CCCEEECCCCCCCCCEEEEEECCC
T ss_conf 7135568853222252-45--------418999634886876405993796-----994661542367852038986589
Q ss_pred CCEEEEEECCCCEEEEEEC-CCEEEEEECCCC------------EEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEE
Q ss_conf 8107999139998999984-992999988996------------0899951799984799992999999999499-0999
Q 002495 762 GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQ------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 827 (915)
Q Consensus 762 ~~~~i~~sp~~~~ll~~~~-dg~I~i~D~~t~------------~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~i 827 (915)
....+.++|++.++++++. +.++.++|++.. ....... ..-.-...+|+..|....+..-| .|.-
T Consensus 276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~~g~aytslfids~v~k 354 (459)
T d1fwxa2 276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVK 354 (459)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEE
T ss_pred CCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECC-CCCCCCCCCCCCCCEEEEEEECCCEEEE
T ss_conf 877338899997899938858957999822535665046884521796113-5767662033898429998612316999
Q ss_pred EECCCC-------CCCCEEEEECCCCCCEEEEE-----EECCCCEEEEEEC---CC----------EEEEEECCCCC
Q ss_conf 987889-------98613888314998539999-----9179998999986---98----------09999889992
Q 002495 828 WTVGSG-------SEGECVHELSCNGNKFHSCV-----FHPTYPSLLVIGC---YQ----------SLELWNMSENK 879 (915)
Q Consensus 828 wdl~s~-------~~~~~i~~~~~~~~~i~~i~-----~spdg~~lisgs~---dg----------~I~iwd~~~~~ 879 (915)
|++... .....+..+..|-..-+.+. ..|+|+++++... |+ .-.++|+...+
T Consensus 355 w~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pe~~qlidisg~~ 431 (459)
T d1fwxa2 355 WNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 431 (459)
T ss_dssp EEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EECCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCE
T ss_conf 73440556644666773113543345788774576786788887899803434344667888987655379747981
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.27 E-value=0.026 Score=29.47 Aligned_cols=14 Identities=7% Similarity=0.335 Sum_probs=6.3
Q ss_pred CEEEEEECCCCCEE
Q ss_conf 80999988999289
Q 002495 868 QSLELWNMSENKTM 881 (915)
Q Consensus 868 g~I~iwd~~~~~~~ 881 (915)
+.|.-+|+.+++.+
T Consensus 444 G~l~AiD~~TG~~~ 457 (571)
T d2ad6a1 444 GQIRAFDLTTGKAK 457 (571)
T ss_dssp EEEEEECTTTCCEE
T ss_pred CCEEEECCCCCCEE
T ss_conf 61788536778464
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.24 E-value=0.027 Score=29.35 Aligned_cols=50 Identities=6% Similarity=-0.010 Sum_probs=30.9
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEE--EEEEECCCC-EEEE
Q ss_conf 1799989999869809999889992899815689869--999937999-9999
Q 002495 855 HPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIA--ALAVSTETG-YVAS 904 (915)
Q Consensus 855 spdg~~lisgs~dg~I~iwd~~~~~~~~~~~h~~~V~--~ia~spdg~-~Las 904 (915)
.-.+..+++++.|+.++.||.++++.+........+. -+.|..+|+ ||+.
T Consensus 485 stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v 537 (573)
T d1kb0a2 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (573)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred EECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEE
T ss_conf 98699899977999199999998868579989899451677999899999999
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.028 Score=29.17 Aligned_cols=219 Identities=8% Similarity=-0.046 Sum_probs=88.5
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC---CEEEEECCCCCCEEEEEECCCCC
Q ss_conf 199997899823467324798678999989999899983-89809999778999---54788425788758999748999
Q 002495 658 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPG---YSLRTFMGHSASVMSLDFHPNKD 733 (915)
Q Consensus 658 ~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs-~Dg~I~iwdl~~~~---~~~~~~~~h~~~V~si~fsp~~~ 733 (915)
.|+..++++......+. ....+.+++|......|+... .++.|+..+++... .....+......+.++++.+.++
T Consensus 11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~ 89 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (266)
T ss_dssp SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred EEEEEECCCCCCEEEEC-CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCC
T ss_conf 18999899985266417-99855999998089999999997997999993578887614899848999854689864265
Q ss_pred EEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEEC--CCEEEEEECCCCEEEEEECCCCCCEEEE
Q ss_conf 1999981898199999479905788626---8107999139998999984--9929999889960899951799984799
Q 002495 734 DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSV 808 (915)
Q Consensus 734 ~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~--dg~I~i~D~~t~~~~~~l~~h~~~V~si 808 (915)
.+.++....+.|.+.++....+...... ....+.+++..+.++.+.. .+.|...++............-.....+
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl 169 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCCCCCEEEEE
T ss_conf 28999548999985764895378887279988336999800394887126997302686368883441200453201699
Q ss_pred EECCCCCEEEEEECC--EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCE
Q ss_conf 992999999999499--099998788998613888314998539999917999899998-698099998899928
Q 002495 809 CWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKT 880 (915)
Q Consensus 809 ~~spdg~~las~s~d--~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs-~dg~I~iwd~~~~~~ 880 (915)
++++.+..|+.+... .|...++..... ..+............+++. +.+|+... .++.|+..+..++..
T Consensus 170 ~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~ 241 (266)
T d1ijqa1 170 TLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD 241 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEECCCCEEEEECCCCCEEEEEECCCCCE-EEEEECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCCC
T ss_conf 86133569999528967999998999977-9999389855664799998--999999989999699999989961
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.35 E-value=0.056 Score=26.67 Aligned_cols=240 Identities=8% Similarity=0.044 Sum_probs=127.3
Q ss_pred CEEEEEECCCCCEEEEEEC-C----CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC-------------
Q ss_conf 8599999389999999978-9----919999789982346732479867899998999989998389-------------
Q 002495 637 KVICCHFSSDGKLLATGGH-D----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------------- 698 (915)
Q Consensus 637 ~V~~iafspdg~~Latgs~-D----g~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~D------------- 698 (915)
.+..++++||++++|.+-. . ..|+++|+.+++.+..... ......+.|.+|+..|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCC-CCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 33425853789879999556667210467741676403144222-43236417857998999997626667654433345
Q ss_pred ---CEEEEEECCCCCCE-EEEECCC--CCCEEEEEECCCCCEEEEEEEC--CCC--EEEEECCCCE--------EEEEEE
Q ss_conf ---80999977899954-7884257--8875899974899919999818--981--9999947990--------578862
Q 002495 699 ---KTVRVWDADNPGYS-LRTFMGH--SASVMSLDFHPNKDDLICSCDG--DGE--IRYWSINNGS--------CTRVFK 760 (915)
Q Consensus 699 ---g~I~iwdl~~~~~~-~~~~~~h--~~~V~si~fsp~~~~ll~sgs~--Dg~--I~iwdi~~~~--------~~~~~~ 760 (915)
..|.+|.+.+.... ...+... ...+..+..+.++..+++.... +.. +.+.++.... ....+.
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEC
T ss_conf 78633899988988653100223235772577530268762456876436776479999517776455663101258304
Q ss_pred CCCEEEE-EECCCCEEEEEEC----CCEEEEEECCCCE---EEEEECCCCCCEEEEEECCCCCEE-EEEECC---EEEEE
Q ss_conf 6810799-9139998999984----9929999889960---899951799984799992999999-999499---09999
Q 002495 761 GGTAQMR-FQPHLGRYLAAAA----ENVVSILDAETQA---CRLSLQGHTKPIDSVCWDPSGELL-ASVSED---SVRVW 828 (915)
Q Consensus 761 ~~~~~i~-~sp~~~~ll~~~~----dg~I~i~D~~t~~---~~~~l~~h~~~V~si~~spdg~~l-as~s~d---~I~iw 828 (915)
....... +...+..+++.+. ++.|...++.... ....+..+...+..-.+...+.+| +....+ .|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~ 364 (430)
T d1qfma1 285 NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (430)
T ss_dssp SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCEEEEEEECCCEEEEEEE
T ss_conf 65562687713773023245765655415873477876554158951367525556789779999999991887089999
Q ss_pred ECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECC----CEEEEEECCCCCE
Q ss_conf 878899861388831499853999991799989999869----8099998899928
Q 002495 829 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKT 880 (915)
Q Consensus 829 dl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs~d----g~I~iwd~~~~~~ 880 (915)
++..+. ...........+..+...++...+.....+ ..++.||+.+++.
T Consensus 365 ~~~~~~---~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 365 DLATGA---LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp ETTTCC---EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred ECCCCC---EEEECCCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCCCC
T ss_conf 899995---88854888716864148988998999981899987699999999985
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.22 E-value=0.061 Score=26.37 Aligned_cols=245 Identities=11% Similarity=0.171 Sum_probs=122.4
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 19999789982346732479867899998999989998389809999778999547884257887589997489991999
Q 002495 658 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 737 (915)
Q Consensus 658 ~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~ 737 (915)
.|.|.|+.+......-.- ..-+...+|..+.|+.-+ ..++.++|+++ +..++.+. ....|.--.|..+. .|+
T Consensus 46 ~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnlet-K~klks~~-~~e~VvfWkWis~~--~L~ 117 (327)
T d1utca2 46 QVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEM-KSKMKAHT-MTDDVTFWKWISLN--TVA 117 (327)
T ss_dssp EEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTT-TEEEEEEE-CSSCCCEEEESSSS--EEE
T ss_pred EEEEEECCCCCCCEECCC---CHHHHHCCCCCCEEEEEC-CCEEEEEEHHH-HHHHCEEE-CCCCCEEEEECCCC--EEE
T ss_conf 399998899876331443---616653088875799962-88689984468-22111587-68885799944798--899
Q ss_pred EEECCCCEEEEECCCC-EEEEEEECC-------CEEEEEECCCCEEEEEEC-------CCEEEEEECCCCEEEEEECCCC
Q ss_conf 9818981999994799-057886268-------107999139998999984-------9929999889960899951799
Q 002495 738 SCDGDGEIRYWSINNG-SCTRVFKGG-------TAQMRFQPHLGRYLAAAA-------ENVVSILDAETQACRLSLQGHT 802 (915)
Q Consensus 738 sgs~Dg~I~iwdi~~~-~~~~~~~~~-------~~~i~~sp~~~~ll~~~~-------dg~I~i~D~~t~~~~~~l~~h~ 802 (915)
... +..|+-|+++.. ...+.|..+ +.....+++.+.++..+- .|.+.+|..+... -..+++|.
T Consensus 118 lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGha 195 (327)
T d1utca2 118 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA 195 (327)
T ss_dssp EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSE
T ss_pred EEC-CCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCCC-CCCCCCEE
T ss_conf 991-8816997356999852662321012486389989899998899995713788305888899802286-75232034
Q ss_pred CCEEEEEECCCC---CEEEEEE---CC-EEEEEECCCCCCC------CEEEEEC---CCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 984799992999---9999994---99-0999987889986------1388831---49985399999179998999986
Q 002495 803 KPIDSVCWDPSG---ELLASVS---ED-SVRVWTVGSGSEG------ECVHELS---CNGNKFHSCVFHPTYPSLLVIGC 866 (915)
Q Consensus 803 ~~V~si~~spdg---~~las~s---~d-~I~iwdl~s~~~~------~~i~~~~---~~~~~i~~i~~spdg~~lisgs~ 866 (915)
.....+.+..+. .+++.+. .. .+.|.++...... +.+..+. ....-..++..++....++..+.
T Consensus 196 a~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK 275 (327)
T d1utca2 196 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 275 (327)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET
T ss_pred EEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEC
T ss_conf 65688870799887309999987898747999986887557888753268877796346884779996433799999966
Q ss_pred CCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEE
Q ss_conf 980999988999289-9815689869999937999999996698299
Q 002495 867 YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 912 (915)
Q Consensus 867 dg~I~iwd~~~~~~~-~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~ 912 (915)
.|.|++||+.++.++ .-.-..+.|...+-..+..-++....+|.|.
T Consensus 276 ~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 276 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEEEECCCCEEE
T ss_conf 75899997566628999404788448962678886089987897699
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.07 Score=25.86 Aligned_cols=201 Identities=10% Similarity=-0.013 Sum_probs=123.2
Q ss_pred CCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCC----CEEEEECCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECC
Q ss_conf 999859999938999999997-8991999978998----2346732479867899998999989998-389809999778
Q 002495 634 STSKVICCHFSSDGKLLATGG-HDKKAVLWHTDTL----KSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVWDAD 707 (915)
Q Consensus 634 H~~~V~~iafspdg~~Latgs-~Dg~I~iwd~~~~----~~~~~l~~h~~~V~~i~fspdg~~Lasg-s~Dg~I~iwdl~ 707 (915)
....+.+++|+...+.|+-.. .++.|...+++.. .....+......+.++++...+..|+.+ ...+.|.+.+++
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~ 107 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEECC
T ss_conf 99855999998089999999997997999993578887614899848999854689864265289995489999857648
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEEEE-CCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEEEEC-CC
Q ss_conf 999547884257887589997489991999981-898199999479905788626---8107999139998999984-99
Q 002495 708 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA-EN 782 (915)
Q Consensus 708 ~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs-~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~~~~-dg 782 (915)
. ......+.........++++|..+.++++.. ..+.|...++........... ....+++.+..+.++.+.. .+
T Consensus 108 g-~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~ 186 (266)
T d1ijqa1 108 G-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186 (266)
T ss_dssp S-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred C-CEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCCCCCEEEEEEEECCCCEEEEECCCCC
T ss_conf 9-537888727998833699980039488712699730268636888344120045320169986133569999528967
Q ss_pred EEEEEECCCCEEEEEECC--CCCCEEEEEECCCCCEEEEEE-CC-EEEEEECCCCCCCC
Q ss_conf 299998899608999517--999847999929999999994-99-09999878899861
Q 002495 783 VVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGE 837 (915)
Q Consensus 783 ~I~i~D~~t~~~~~~l~~--h~~~V~si~~spdg~~las~s-~d-~I~iwdl~s~~~~~ 837 (915)
.|...++........... ......++++. +..|+... .+ .|...+..++....
T Consensus 187 ~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~ 243 (266)
T d1ijqa1 187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVN 243 (266)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEEEEECCCCCEEEEEECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCCCEE
T ss_conf 9999989999779999389855664799998--99999998999969999998996159
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=94.57 E-value=0.086 Score=25.10 Aligned_cols=81 Identities=9% Similarity=0.126 Sum_probs=44.4
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCC-EEEEEEECCCC
Q ss_conf 929999889960899951799984799992999999999499-0999987889986138883149985-39999917999
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTYP 859 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~-i~~i~~spdg~ 859 (915)
+.+.-+|+.+++.+..+... .+..+-.+.-.+.++++++.| .++.||.+++ +.+.++...... -.-+.|..+|+
T Consensus 438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tG---e~LW~~~l~~~~~~~P~ty~~dGk 513 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKG---EALWQFEAQSGIVAAPMTFELAGR 513 (560)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCEEEEECCCCEEEEECCCC-CCCCCCEEEECCCEEEEECCCCCEEEEECCCC---CEEEEEECCCCCCCCCEEEEECCE
T ss_conf 64688707788373102578-88877405987998999778981999999998---582799899995516779998999
Q ss_pred -EEEEEEC
Q ss_conf -8999986
Q 002495 860 -SLLVIGC 866 (915)
Q Consensus 860 -~lisgs~ 866 (915)
||++...
T Consensus 514 qyv~v~aG 521 (560)
T d1kv9a2 514 QYVAIMAG 521 (560)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
T ss_conf 99999917
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.34 E-value=0.096 Score=24.72 Aligned_cols=270 Identities=10% Similarity=0.073 Sum_probs=140.1
Q ss_pred CEEEEEECCCCCEEEEEECCC-----------CEEEEECCCCCEE--EEE-CCCCCCEEEEEECCCCCEEEEEECC-CEE
Q ss_conf 859999938999999997899-----------1999978998234--673-2479867899998999989998389-809
Q 002495 637 KVICCHFSSDGKLLATGGHDK-----------KAVLWHTDTLKSK--TNL-EEHSSLITDVRFSPSMPRLATSSFD-KTV 701 (915)
Q Consensus 637 ~V~~iafspdg~~Latgs~Dg-----------~I~iwd~~~~~~~--~~l-~~h~~~V~~i~fspdg~~Lasgs~D-g~I 701 (915)
.+.......+|++++.|+.+. .+.+||..+..-. ... ..+........+.+++.+++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred CCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCE
T ss_conf 01789992599999998405766678877606899998888968666778987445256899946886898636888621
Q ss_pred EEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECC------CCEEEEECCCCEEEEEEEC--------------
Q ss_conf 99977899954788425788758999748999199998189------8199999479905788626--------------
Q 002495 702 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG-------------- 761 (915)
Q Consensus 702 ~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~D------g~I~iwdi~~~~~~~~~~~-------------- 761 (915)
.+||..+..............-.+.+..+++. +++.++.+ ..+.+||..+.+....-..
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 179 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEEECCCC-EEEECCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCEE
T ss_conf 67567557442156566421013035531782-66521366333543205663488895511588764431134665136
Q ss_pred ---CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEC--C----CCC--CEEEEEE-CCCCCEEEEEECC------
Q ss_conf ---81079991399989999849929999889960899951--7----999--8479999-2999999999499------
Q 002495 762 ---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--G----HTK--PIDSVCW-DPSGELLASVSED------ 823 (915)
Q Consensus 762 ---~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~--~----h~~--~V~si~~-spdg~~las~s~d------ 823 (915)
....+...+++..++.+...+.+.+++..+........ . +.. .-.++.+ ..++++++.++..
T Consensus 180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~ 259 (387)
T d1k3ia3 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 259 (387)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred ECCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 50422699970798778746867747814866671731665566766576322263788613588247887536788775
Q ss_pred ---EEEEEECCCCCCCCEEE-EEC--CCCCCEEEEEEECCCCEEEEEECCC-----------EEEEEECCCCCEEEECCC
Q ss_conf ---09999878899861388-831--4998539999917999899998698-----------099998899928998156
Q 002495 824 ---SVRVWTVGSGSEGECVH-ELS--CNGNKFHSCVFHPTYPSLLVIGCYQ-----------SLELWNMSENKTMTLTAH 886 (915)
Q Consensus 824 ---~I~iwdl~s~~~~~~i~-~~~--~~~~~i~~i~~spdg~~lisgs~dg-----------~I~iwd~~~~~~~~~~~h 886 (915)
...++++.......... ... .......+.+..++++.+++++.+. .+.+||..+.+-..+...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~ 339 (387)
T d1k3ia3 260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 339 (387)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred CCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEECEEEEEECCCCEEEECCCC
T ss_conf 21000001111135678840603665665434335660587499988845676688994701079897999918878899
Q ss_pred C--CCE-EEEEEECCCCEEEEEEC
Q ss_conf 8--986-99999379999999966
Q 002495 887 E--GLI-AALAVSTETGYVASASH 907 (915)
Q Consensus 887 ~--~~V-~~ia~spdg~~Lasgs~ 907 (915)
. ..- ....+.+|+++++.|+.
T Consensus 340 ~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 340 SIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCCEEEEEECCCCEEEEEECC
T ss_conf 975531279999889999999698
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.08 E-value=0.11 Score=24.33 Aligned_cols=58 Identities=10% Similarity=0.112 Sum_probs=27.7
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEEC
Q ss_conf 929999889960899951799984799992999999999499-09999878899861388831
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 843 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~ 843 (915)
|.|.-||..+++.+...... .++.+-..+-.+.+++.++.| .++.||.+++ +.+.++.
T Consensus 453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TG---e~LW~~~ 511 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTG---DLLWKFK 511 (596)
T ss_dssp EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEE
T ss_pred CEEEEEECCCCCEECCCCCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCC---CEEEEEE
T ss_conf 53899807888562332788-88744146866997999789995999999998---4836998
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.64 E-value=0.32 Score=20.45 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=41.1
Q ss_pred EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCE--EEEEEECCCC-
Q ss_conf 0999987889986138883149985399999179998999986980999988999289981568986--9999937999-
Q 002495 824 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLI--AALAVSTETG- 900 (915)
Q Consensus 824 ~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~~~~~h~~~V--~~ia~spdg~- 900 (915)
.|.-+|+.++ +.+...... .++..-.....+..+++++.|+.++.||.++++++........+ .-+.|..+|+
T Consensus 467 ~l~AiD~~TG---~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 467 SLRAMDPVSG---KVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp EEEEECTTTC---CEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred EEEEECCCCC---CEEEECCCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 5999807899---587326779-997450169769869996799969999999986867988999962167799989999
Q ss_pred EEEEE
Q ss_conf 99999
Q 002495 901 YVASA 905 (915)
Q Consensus 901 ~Lasg 905 (915)
||+..
T Consensus 543 Yv~i~ 547 (582)
T d1flga_ 543 YLGVT 547 (582)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99999
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=89.15 E-value=0.34 Score=20.18 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=44.0
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCE-EEEEEECCCC
Q ss_conf 929999889960899951799984799992999999999499-09999878899861388831499853-9999917999
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF-HSCVFHPTYP 859 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i-~~i~~spdg~ 859 (915)
|.+.-||..+++.+....... +...-...-.+.++++++.| .++.||.+++ +.+.++....... .-+.|..+++
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TG---e~LW~~~~~~~~~~~P~ty~~~Gk 532 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATG---EKLWEAPTGTGVVAAPSTYMVDGR 532 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCEEEECCCCCCEEEEECCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCC---CEEEEEECCCCCCCCCEEEEECCE
T ss_conf 617875787786670516889-8877607986998999779991999999988---685799898994516779998999
Q ss_pred -EEEEEEC
Q ss_conf -8999986
Q 002495 860 -SLLVIGC 866 (915)
Q Consensus 860 -~lisgs~ 866 (915)
||++...
T Consensus 533 QYv~v~~G 540 (573)
T d1kb0a2 533 QYVSVAVG 540 (573)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
T ss_conf 99999937
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=88.57 E-value=0.37 Score=19.89 Aligned_cols=186 Identities=16% Similarity=0.214 Sum_probs=105.6
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEC------CCCCEEEEEEC-C---CEEEEEECCCCCCEEE
Q ss_conf 899999999789919999789982346732479867899998------99998999838-9---8099997789995478
Q 002495 645 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS------PSMPRLATSSF-D---KTVRVWDADNPGYSLR 714 (915)
Q Consensus 645 pdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fs------pdg~~Lasgs~-D---g~I~iwdl~~~~~~~~ 714 (915)
|+..+++....++-|++||+. ++.+..+.. +.+..|..- .....|++++. + .+|.+|.+......+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred CCCCEEEEECCCCCEEEECCC-CCEEEECCC--CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCC
T ss_conf 672389997586887999189-968774036--77673243366435775068999957867630599998447666311
Q ss_pred EECCC-------CCCEEEEEE--CCC-CCEEEEEEECCCCEEEEECCC---C----EEEEEEE--CCCEEEEEECCCCEE
Q ss_conf 84257-------887589997--489-991999981898199999479---9----0578862--681079991399989
Q 002495 715 TFMGH-------SASVMSLDF--HPN-KDDLICSCDGDGEIRYWSINN---G----SCTRVFK--GGTAQMRFQPHLGRY 775 (915)
Q Consensus 715 ~~~~h-------~~~V~si~f--sp~-~~~ll~sgs~Dg~I~iwdi~~---~----~~~~~~~--~~~~~i~~sp~~~~l 775 (915)
.+... ...++.+|+ .+. +..++++...+|.+..|.+.. + +.++.+. ..+..+.+....+.|
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL 194 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCE
T ss_conf 24665543345667656999774277780799997588608999997478972555763035888862169981788949
Q ss_pred EEEECCCEEEEEECCC-----CEEEEEECC--CCCCEEEEEECC--CCC-EEEEEECC--EEEEEECCCC
Q ss_conf 9998499299998899-----608999517--999847999929--999-99999499--0999987889
Q 002495 776 LAAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWDP--SGE-LLASVSED--SVRVWTVGSG 833 (915)
Q Consensus 776 l~~~~dg~I~i~D~~t-----~~~~~~l~~--h~~~V~si~~sp--dg~-~las~s~d--~I~iwdl~s~ 833 (915)
+++-.+..|..++.+. ...+....+ ....+..++.-. ++. ||++.+.+ +..+||....
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 9954755238888045777662243113675445785453799847998599997379976999956788
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.93 E-value=0.5 Score=18.78 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=46.5
Q ss_pred CCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCC-EEEEEEECCC
Q ss_conf 9929999889960899951799984799992999999999499-0999987889986138883149985-3999991799
Q 002495 781 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK-FHSCVFHPTY 858 (915)
Q Consensus 781 dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~-i~~i~~spdg 858 (915)
.|.|.-+|+.+++.+..+.... ++..-..+..+.++++++.| .++.||.+++ +.+.++...... -.-+.|..+|
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TG---e~LW~~~~~~~~~~~P~ty~~~G 540 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG---KELWKFQTGSGIVSPPITWEQDG 540 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECSSCCCSCCEEEEETT
T ss_pred CCEEEEECCCCCCEEEECCCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCC---CEEEEEECCCCCCCCCEEEEECC
T ss_conf 7759998078995873267799-9745016976986999679996999999998---68679889999621677999899
Q ss_pred C-EEEEEE
Q ss_conf 9-899998
Q 002495 859 P-SLLVIG 865 (915)
Q Consensus 859 ~-~lisgs 865 (915)
+ |+++..
T Consensus 541 ~qYv~i~a 548 (582)
T d1flga_ 541 EQYLGVTV 548 (582)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
T ss_conf 99999993
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.27 E-value=0.53 Score=18.55 Aligned_cols=221 Identities=8% Similarity=0.027 Sum_probs=102.2
Q ss_pred CCCCEEEEEECCCCCEEEEEE-CC----CEEEEEECCCCCCEEE-EECCCCCCEEEEEECCCCCEEEEEEEC--------
Q ss_conf 798678999989999899983-89----8099997789995478-842578875899974899919999818--------
Q 002495 676 HSSLITDVRFSPSMPRLATSS-FD----KTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDG-------- 741 (915)
Q Consensus 676 h~~~V~~i~fspdg~~Lasgs-~D----g~I~iwdl~~~~~~~~-~~~~h~~~V~si~fsp~~~~ll~sgs~-------- 741 (915)
+.-.+..++++|++++|+.+- .+ ..|+++|+.+ +..+. .+.. .....+.|.+++..++++.-.
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t-g~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~ 199 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG-AKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT-TEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred CCCEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCC-CEECCCCCCC--CCCCCEEECCCCCEEEEEEECCCCCCCCC
T ss_conf 44133425853789879999556667210467741676-4031442224--32364178579989999976266676544
Q ss_pred -------CCCEEEEECCCCEE--EEEEEC--C---CEEEEEECCCCEEEEEEC---CC--EEEEEECCCCE--------E
Q ss_conf -------98199999479905--788626--8---107999139998999984---99--29999889960--------8
Q 002495 742 -------DGEIRYWSINNGSC--TRVFKG--G---TAQMRFQPHLGRYLAAAA---EN--VVSILDAETQA--------C 794 (915)
Q Consensus 742 -------Dg~I~iwdi~~~~~--~~~~~~--~---~~~i~~sp~~~~ll~~~~---dg--~I~i~D~~t~~--------~ 794 (915)
...|.+|.+.+... ...+.. . ...+..+.++..++.... .. .+.+.|..... .
T Consensus 200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 279 (430)
T d1qfma1 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (430)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCE
T ss_conf 33345786338999889886531002232357725775302687624568764367764799995177764556631012
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCC-
Q ss_conf 99951799984799992999999999499----099998788998613888314998539999917999899998-698-
Q 002495 795 RLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQ- 868 (915)
Q Consensus 795 ~~~l~~h~~~V~si~~spdg~~las~s~d----~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs-~dg- 868 (915)
...+......+..+.. .++.+++....+ .|...++...........+..+...+..-.+...+.+|++.. .++
T Consensus 280 ~~~~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~ 358 (430)
T d1qfma1 280 VKLIDNFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK 358 (430)
T ss_dssp EEEECSSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred EEEECCCCCCEEEEEC-CCCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCEEEEEEECCCE
T ss_conf 5830465562687713-773023245765655415873477876554158951367525556789779999999991887
Q ss_pred -EEEEEECCCCCEEEE-CCCCCCEEEEEEECCCC
Q ss_conf -099998899928998-15689869999937999
Q 002495 869 -SLELWNMSENKTMTL-TAHEGLIAALAVSTETG 900 (915)
Q Consensus 869 -~I~iwd~~~~~~~~~-~~h~~~V~~ia~spdg~ 900 (915)
.|++++...+....+ ....+.|..+...++..
T Consensus 359 ~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~ 392 (430)
T d1qfma1 359 NTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (430)
T ss_dssp EEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred EEEEEEECCCCCEEEECCCCCCEEEECCCCCCCC
T ss_conf 0899998999958885488871686414898899
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.68 E-value=0.62 Score=18.04 Aligned_cols=94 Identities=9% Similarity=0.050 Sum_probs=55.9
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEE
Q ss_conf 85999993899999999789919999789982346732479867899998999989998389809999778999547884
Q 002495 637 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 716 (915)
Q Consensus 637 ~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~ 716 (915)
.|..++|+.| .|++.. ++.+..++............-...+..+.++|. .++....++.+.++++.+.. .....
T Consensus 88 ~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~-~~~~~ 161 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS-TKQLA 161 (381)
T ss_dssp TEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-EEEEE
T ss_pred CEEEEEEECC--EEEEEE-CCCEEEEEEECCCCCCCCCCCCCCCCCEECCCC--EEEEEECCCCEEEEEECCCC-CCCCC
T ss_conf 8689986189--899995-897899985100145446554556111021886--06999658977899941586-44444
Q ss_pred C-----CCCCCEEEEEECCCCCEEE
Q ss_conf 2-----5788758999748999199
Q 002495 717 M-----GHSASVMSLDFHPNKDDLI 736 (915)
Q Consensus 717 ~-----~h~~~V~si~fsp~~~~ll 736 (915)
. .-...+.+++|++.+..++
T Consensus 162 ~~v~~~~~~~~~~~v~ws~kgkq~v 186 (381)
T d1xipa_ 162 QNVTSFDVTNSQLAVLLKDRSFQSF 186 (381)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCCCEEEECCCCEEEEEECCCEEEE
T ss_conf 7752387338926999968968999
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.02 E-value=0.65 Score=17.84 Aligned_cols=221 Identities=10% Similarity=0.007 Sum_probs=119.4
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEE-CCCCCEEEEE------ECCCEEEEEECCCCCCEEEEECC
Q ss_conf 9999999978991999978998234673247986789999-8999989998------38980999977899954788425
Q 002495 646 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SPSMPRLATS------SFDKTVRVWDADNPGYSLRTFMG 718 (915)
Q Consensus 646 dg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~f-spdg~~Lasg------s~Dg~I~iwdl~~~~~~~~~~~~ 718 (915)
+.++|+++...|.|.++-+..++.++..+. +|..... .+.-.++..+ -+-..|.+.++..+++..+.-..
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtke---PI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp 101 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNRE---PINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV 101 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCSS---CCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred CCCEEEEEECCCEEEEEEEECCEEEEEECC---CCCCCCCCCCCCCEEEEEEEHHCCCCEEEEEEECCCCCCEEEEECCC
T ss_conf 985899983266688999968878997416---66676888667646889760124700024898705888802473377
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEEC--CCE--EEEEECCCCEE
Q ss_conf 78875899974899919999818981999994799057886268107999139998999984--992--99998899608
Q 002495 719 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA--ENV--VSILDAETQAC 794 (915)
Q Consensus 719 h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~~~~i~~sp~~~~ll~~~~--dg~--I~i~D~~t~~~ 794 (915)
..-.|.++++. ++.++++|+....+.+|-++.++..+...-+.....-.-.+++++-.+- .+. ..+-|+.++..
T Consensus 102 k~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l 179 (313)
T d2hu7a1 102 KPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 179 (313)
T ss_dssp CSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred CEEEEEEEEEC--CCEEEEECCCCCCEEEEEEECCCEEEECCCCCCCEEEECCCCEEEEEEEECCCCCEEEEEECCCCCE
T ss_conf 40799886526--8338996556783379998289554300389940477525776888766459852589984366977
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECC----EEEEEECCCCCCCCEEEEEC------CCCCCEEEEEEECCCCEEEEE
Q ss_conf 99951799984799992999999999499----09999878899861388831------499853999991799989999
Q 002495 795 RLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELS------CNGNKFHSCVFHPTYPSLLVI 864 (915)
Q Consensus 795 ~~~l~~h~~~V~si~~spdg~~las~s~d----~I~iwdl~s~~~~~~i~~~~------~~~~~i~~i~~spdg~~lisg 864 (915)
..+....+.++...+.+..+. ++.-+. ....+|+++++- ...++. -....|.-+-+.|+++.++++
T Consensus 180 -ri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~y--erve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iia 255 (313)
T d2hu7a1 180 -RVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSV--EDLELPSKDFSSYRPTAITWLGYLPDGRLAVVA 255 (313)
T ss_dssp -EEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCE--EECCCSSCHHHHHCCSEEEEEEECTTSCEEEEE
T ss_pred -EEECCCCCCCCCEEECCCCEE-EECCCCCCCEEEEEEECCCCCE--EEEECCCCCCEEECCEEEEEEEECCCCCEEEEE
T ss_conf -985478884114057368655-4044777715799994566935--552157444203221377741137877279998
Q ss_pred ECCCEEEEEEC
Q ss_conf 86980999988
Q 002495 865 GCYQSLELWNM 875 (915)
Q Consensus 865 s~dg~I~iwd~ 875 (915)
-.||.-++|.-
T Consensus 256 krdG~s~lF~n 266 (313)
T d2hu7a1 256 RREGRSAVFID 266 (313)
T ss_dssp EETTEEEEEET
T ss_pred ECCCCHHEEEC
T ss_conf 20770222456
|