Citrus Sinensis ID: 002564

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
cccccccCECccCCcCEEEEEEcccccEEEEEEccccEEEEEccccCEEEEcccccccEEEEEEEccEEEEEcccEEEEEEcccEEEEEEcccccEEEEEEEccEEEEECccccEEEEEcccccEEEEEcccCCcccccEEEEEEcccccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEECccccEEEEEcccccEEEEEcccccccEEEEEEccccccEEEEECccccEEEEEccccEEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccccccEEEEEcccccEEEEEEccccEEEEEcccccccEEEcccccEEEEEEEccccccEEcccCEEEEcccEEcccccEEEEEEccccEEEEEEccccccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccccccccEEEEEEcccccEEEEECccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEECccccEEEEEcccccEEEEEEEcccEEEEEEcccccEEEEEEccccEEEEEccccccccccccEEccccccCEEEEccccccccccccccccccccccccccccccccccccccccccEEEECccccccEEEccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHcccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccc
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS************RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNK******KPEKAPFFLPSVPSL*********************************FIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
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MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Uncharacterized WD repeat-containing protein C1672.07 probableO14053
WD repeat-containing protein 36 Involved in T-cell activation and highly co-regulated with IL2.probableQ8NI36
U3 small nucleolar RNA-associated protein 21 Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.probableQ06078

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2YMU, chain A
Confidence level:probable
Coverage over the Query: 63-341
View the alignment between query and template
View the model in PyMOL
Template: 3SN6, chain B
Confidence level:probable
Coverage over the Query: 123-348
View the alignment between query and template
View the model in PyMOL
Template: 3DM0, chain A
Confidence level:probable
Coverage over the Query: 427-626
View the alignment between query and template
View the model in PyMOL
Template: 2CNX, chain A
Confidence level:probable
Coverage over the Query: 152-355
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
3iza, chain Aprobable Alignment | Template Structure