Citrus Sinensis ID: 002564

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------
Protein Sequence
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
Secondary Structure (PSIPRED)
cccccccEEEccEEcEEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEEccEEEEEcccEEEEEEcccEEEEEEcccccEEEEEEEccEEEEEEccccEEEEEcccccEEEEEcccEEcccccEEEEEEcccccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccccccEEEEEcccccEEEEEEccccEEEEEcccccccEEEcccccEEEEEEEccccccEEcccEEEEEcccEEcccccEEEEEEccccEEEEEEccccccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEcccEEEEEEcccccEEEEEEccccEEEEEccccccccccccEEccccccEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHcccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccccccccccEEEEEEcccccEEEEEccccEEEEEccccccEEEEEEcccEEEEEccccEEEEEEcccccEEEEEcccccccccEEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEccccccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEcccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEcEEEEcccccEEEEEEccccccEEEEEccccccccccEEEEEEcccccEcccccccccccHccccHEEEccccccHHHHHHccHHHHHHccccccccccccccccEcccccccccEEEcccccccccccccEEccccccccccHHHHHHHHHHHccccccHHHHHHHHHccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgifepykaigyitssvpfsvqrlgtenfVTVSVGKAFHIYNCAklnlvlvgpqlpKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEhilsididgNMFIWAFKGieenlapvghvklddkftptcimhpdtylNKVIVGSQEGSLQLWNISTKKKLYefkgwgssisscvsspaldvvavgcsdgkihvhnvrydeeLVTFTHSMRGAVTAlafssdgqpllasgassgvISIWNLEKRRLQSVIREAHDNAIISLHffanepvlmsasadnSIKMWIfdttdgdprllrfrsghsapplcIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEelklkpviafdcaeirerdwcnvvtCHMDTAQAYVWRLQNfvlgehilrpcpenptavkactisacgnfaVLGTAGGWIERFnlqsgisrgsyldmsersnyahngeVVGVACDSTNTLMIsagyhgdikvwdfkgrdlksrWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFeghtdritdfcfsedgkwllssgmdgslRIWDVILARQIDAIHVDVSItalslspnmdVLATAHVDQNGVYLWVNRcmfsgdsnidsyasgkeivsvkmpsvssvegcqdenssqpdvhrtdrvpkdsfglptfkqqipdlvtlsllpksqwqSLINLDIIKarnkpieppkkpekapfflpsvpslsgeilfkpsestkedteslkvgnktkpdipvSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIidhddhqeldkrpeyLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
Flexible Loop (DISEMBL)
mgifepykaigyiTSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIqdqqsrelsqrhvakrarklkmkeeelklkpviafdcaeirERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKfeghtdritdfcFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEgcqdenssqpdvhrtdrvPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKpsestkedteslkvgnktkpdiPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
Low Complexity Region (SEG)
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGssisscvssPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARklkmkeeelklkPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNkpieppkkpekAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
Disordered region (IsUnstruct)
**IFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ*************************LKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYA****************************************GLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKA**********************************************************IQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFL*****
Disordered Region (DISOPRED)
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS************RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNK******KPEKAPFFLPSVPSL*********************************FIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHD*HQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQS**WQKIDKMFQSARCVVSFLSNSQL
Disordered Region (DISEMBL)
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSV**********************RTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPS***********VGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
Disordered Region (DISPRO)
*GIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPS*******ESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQ*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	907	2.2.26 [Sep-21-2011]
O14053	902	Uncharacterized WD repeat	yes	no	0.926	0.931	0.357	1e-161
Q8NI36	951	WD repeat-containing prot	yes	no	0.960	0.915	0.343	1e-151
Q06078	939	U3 small nucleolar RNA-as	yes	no	0.928	0.896	0.306	1e-115
Q00808	1356	Vegetative incompatibilit	no	no	0.564	0.377	0.214	1e-18
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.452	0.243	0.241	2e-18
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.522	0.376	0.223	2e-16
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.452	0.268	0.205	6e-15
Q55563	1693	Uncharacterized WD repeat	N/A	no	0.485	0.259	0.245	5e-14
Q6NVM2	655	Katanin p80 WD40 repeat-c	no	no	0.205	0.283	0.288	5e-13
Q6PH57	340	Guanine nucleotide-bindin	no	no	0.241	0.644	0.251	2e-12

>sp|O14053|YC47_SCHPO Uncharacterized WD repeat-containing protein C1672.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1672.07 PE=4 SV=1

 Score =  569 bits (1467), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 324/906 (35%), Positives = 500/906 (55%), Gaps = 66/906 (7%)

Query: 3   IFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRAL 62
           I+ P+++IG+++++VPF ++  GT   VT SVG  F  Y+C KLNL+ VG QL K+I  L
Sbjct: 23  IYAPFRSIGHVSNAVPFDIEARGTHFLVTTSVGNTFQTYDCEKLNLLFVGKQLDKEITCL 82

Query: 63  ASYRDYTFAAYGNHIAVVKRAHQVATW----SRHSAKVNLLLLFGEHILSIDIDGNMFIW 118
            S++D+   A G+ I   KR   +  W     +    V  L  FGE I++     ++++W
Sbjct: 83  KSFKDFMLVAAGSKIFAYKRGKII--WDIDVEQEHGTVTHLDAFGEWIIACTSSRHVYVW 140

Query: 119 AFKGIEENLAPVGHVKLDDKFTP------TCIMHPDTYLNKVIVGSQEGSLQLWNISTKK 172
             K   +   P    +L   F P      T ++HP TYLNK+++G  +G+LQ+WN+   K
Sbjct: 141 --KHASKYSVP----ELHTTFLPNTNADITSLLHPSTYLNKILLGFSDGALQIWNLRVSK 194

Query: 173 KLYEFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231
           +++EF+ + G  I+S   +P LDV+AVG   G+I + N++    L+ F     G V + +
Sbjct: 195 RVHEFQEFFGDGITSLTQAPVLDVLAVGTISGRIVIFNLKNGSILMEFKQD--GQVLSCS 252

Query: 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS 291
           F +DG P+LAS    G +S W+L KRR+Q+V   AH  ++  + F   +P+L++A  DNS
Sbjct: 253 FRTDGTPILASSNPIGDLSFWDLSKRRIQNVTYNAHFGSLPKIQFLNGQPILVTAGPDNS 312

Query: 292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSR 350
           +K WIFD+ DG PR+LR R+GH  PP  ++FY    H L SA  DR+ R  S+ QD QS 
Sbjct: 313 LKEWIFDSMDGAPRILRSRNGHYEPPSFVKFYGKSVHFLISAATDRSLRAVSLYQDSQST 372

Query: 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410
           ELSQ  V  +A+KL ++ EELKL  + A   +  RE+ W NV+T H + + A  W  ++ 
Sbjct: 373 ELSQGSVISKAKKLNVRPEELKLPEITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSK 432

Query: 411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 470
            LG+H+L P  +  T+V++  +S CGNF ++G++ G ++ +N+QSGI R S+   S    
Sbjct: 433 TLGQHVL-PTSDG-TSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRKSFGQSS---- 486

Query: 471 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL 530
                 V  V  D+ N ++++A   G +K WDF   +L    +VG S+   +Y   + L+
Sbjct: 487 -LSGKPVTAVMLDNVNRILVTASLDGILKFWDFNKGNLIDSLDVGSSITHAIYQHSSDLV 545

Query: 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590
           A   DD  IR+ DV   ++VR+  GH++R+T F FS+ G+WL+++ +DG++R WD+    
Sbjct: 546 AVACDDFGIRIVDVQTRKIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPTGH 605

Query: 591 QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSV 650
            ID+I      T+L+ +P  D LAT HVDQ G+ LW N  MF   S         ++V V
Sbjct: 606 LIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLSMFKHVST--KALRLDDVVEV 663

Query: 651 KMPSVSS------VEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQ 704
             PSVS       VE   +  S+  D        ++     T  Q  P+L TLS LP++Q
Sbjct: 664 SAPSVSGEKGISVVEAALNVESNAED--------EEDISYRTMDQLDPNLQTLSKLPRTQ 715

Query: 705 WQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNK 764
           WQ+LINL+ IKARN P E PK PEKAPFFLPS+   S   + K   +T+    +     K
Sbjct: 716 WQTLINLEAIKARNAPKEVPKVPEKAPFFLPSLKDQSEATVPKQPIATEISKPTAVASIK 775

Query: 765 TKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRP 824
               +  ++F  LLH   +     AF +Y+KSL P+ +D+E+R            LD  P
Sbjct: 776 ----VSGTEFSTLLHGNDD----DAFFEYLKSLGPAKIDLEIR-----------SLDAYP 816

Query: 825 EYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAV 884
            Y    L ++ +   +S R +FE +QA + +F K H + +  H   +D       +++  
Sbjct: 817 PYEEFILFINIMTRRLSKRRDFELVQACMSVFTKSHEDVLLMHDTPEDTVPVFESLKA-- 874

Query: 885 WQKIDK 890
           W+ + K
Sbjct: 875 WESVHK 880

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8NI36|WDR36_HUMAN WD repeat-containing protein 36 OS=Homo sapiens GN=WDR36 PE=1 SV=1

 Score =  537 bits (1383), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 316/919 (34%), Positives = 507/919 (55%), Gaps = 48/919 (5%)

Query: 2   GIFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKI 59
            +F  ++A+G  ++ +P  V+   L    +VT  VGK+FH Y+  KL+LV V   +P+ I
Sbjct: 68  ALFAGFRALGLFSNDIPHVVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSVPQDI 127

Query: 60  RALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIW 118
             +A+     FAAYGN  +   R  ++  T+  H A+++ L  FG+HI+S+D DG + IW
Sbjct: 128 CCMAADGRLVFAAYGNVFSAFARNKEIVHTFKGHKAEIHFLQPFGDHIISVDTDGILIIW 187

Query: 119 AFKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF 177
                EE L     +  D   F  + I+HP TYLNK+++GS++GSLQLWN+ + K LY F
Sbjct: 188 HIYSEEEYL----QLTFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTF 243

Query: 178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237
            GW   +++   +PA+DVVA+G   G++ +HN++++E L+ F     G +T+++F +DG 
Sbjct: 244 PGWKVGVTALQQAPAVDVVAIGLMSGQVIIHNIKFNETLMKFRQDW-GPITSISFRTDGH 302

Query: 238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
           P++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIF
Sbjct: 303 PVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIF 362

Query: 298 DTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
           D   G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS + ++ ++ L    
Sbjct: 363 DGPTGEGRLLRFRMGHSAPLTNIRYYGQNGQQILSASQDGTLQSFSTVHEKFNKSLGHGL 422

Query: 357 VAKRARKLKMKEEEL--KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414
           + K+  K K  +  +  +L P+  F   E RE DW  ++ CH        W  Q   +G 
Sbjct: 423 INKKRVKRKGLQNTMSVRLPPITKFAAEEARESDWDGIIACHQGKLSCSTWNYQKSTIGA 482

Query: 415 HILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472
           + L+P    ++     A  I++CGNFAV+G + G ++ +N+QSGI RGS+       + A
Sbjct: 483 YFLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHRGSF-----GKDQA 537

Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532
           H G V GVA D  N L ++ G  G +K W+FK + L     +  S   ++ HR +G+L  
Sbjct: 538 HKGSVRGVAVDGLNQLTVTTGSEGLLKFWNFKNKILIHSVSLSSSPNIMLLHRDSGILGL 597

Query: 533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592
             DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     I
Sbjct: 598 ALDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISAAMDCSIRTWDLPSGCLI 657

Query: 593 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 652
           D   +D +   +S+SP  D LAT+HVD  G+YLW N  ++       S  S + + +  +
Sbjct: 658 DCFLLDSAPLNVSMSPTGDFLATSHVDHLGIYLWSNISLY-------SVVSLRPLPADYV 710

Query: 653 PSVSSVEG---CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLI 709
           PS+  + G    QD   S+  V  +D + +  +  P  +Q    LVTLSLLP+S+W++L+
Sbjct: 711 PSIVMLPGTCQTQDVEVSEETVEPSDELIE--YDSP--EQLNEQLVTLSLLPESRWKNLL 766

Query: 710 NLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDI 769
           NLD+IK +NKP EPPK P+ APFF+P++P L          +  + ++ + +G   +   
Sbjct: 767 NLDVIKKKNKPKEPPKVPKSAPFFIPTIPGLVPRYAAPEQNNDPQQSKVVNLGVLAQK-- 824

Query: 770 PVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLS- 828
             S F   L        +    + +K   PS ++ ELR L     D    ++    +L  
Sbjct: 825 --SDFCLKLEEGLVNNKYDTALNLLKESGPSGIETELRSL---SPDCGGSIEVMQSFLKM 879

Query: 829 IELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKI 888
           I ++LD        + +FE  QA + LFLK+H + +     L ++   L       W  +
Sbjct: 880 IGMMLDR-------KRDFELAQAYLALFLKLHLKMLPSEPVLLEEITNLSSQVEENWTHL 932

Query: 889 DKMFQSARCVVSFLSNSQL 907
             +F  + C++++L ++ L
Sbjct: 933 QSLFNQSMCILNYLKSALL 951

Involved in T-cell activation and highly co-regulated with IL2.

Homo sapiens (taxid: 9606)

>sp|Q06078|UTP21_YEAST U3 small nucleolar RNA-associated protein 21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP21 PE=1 SV=1

 Score =  417 bits (1073), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 282/920 (30%), Positives = 463/920 (50%), Gaps = 78/920 (8%)

Query: 3   IFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVG-PQLPKKIRA 61
           IF P++ IG +++ VPF+   LG+  ++   VGK F IY+   L+L+ V   + P  I A
Sbjct: 23  IFSPFRIIGNVSNGVPFATGTLGSTFYIVTCVGKTFQIYDANTLHLLFVSEKETPSSIVA 82

Query: 62  LASYRDYTFAAYGNHIAVVKRAHQVATWSRHS-AKVNLLLLFGEHILSIDIDGNMFIWAF 120
           L+++  Y +AAY N + + KR  +       + A V  L +FG+++ +   D ++FI+  
Sbjct: 83  LSAHFHYVYAAYENKVGIYKRGIEEHLLELETDANVEHLCIFGDYLCASTDDNSIFIYKK 142

Query: 121 KGIEENLAPVGHVKLD----DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
              ++      + KL            + H  TYLNK+ V ++   L L+N+ T K ++ 
Sbjct: 143 SDPQDKYPSEFYTKLTVTEIQGGEIVSLQHLATYLNKLTVVTKSNVL-LFNVRTGKLVFT 201

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236
              +   I++   +P LD++A+G   G++ + N+R  + + T     +  +++L+F +DG
Sbjct: 202 SNEFPDQITTAEPAPVLDIIALGTVTGEVIMFNMRKGKRIRTIKIP-QSRISSLSFRTDG 260

Query: 237 QPLLASGASSGVISIWNLEKRR----LQSVIREAHDNAIISLHFFANEPVLMSASADNSI 292
              L+ G SSG +  ++L++R     L+++ RE++   +    F   +P+++++  DNS+
Sbjct: 261 SSHLSVGTSSGDLIFYDLDRRSRIHVLKNIHRESY-GGVTQATFLNGQPIIVTSGGDNSL 319

Query: 293 KMWIFDTT----DGD-----PRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRAFRLFS 342
           K ++FD +     GD     PR LR R GHS PP  I F  +  H +LSA +DR+   FS
Sbjct: 320 KEYVFDPSLSQGSGDVVVQPPRYLRSRGGHSQPPSYIAFADSQSHFMLSASKDRSLWSFS 379

Query: 343 VIQDQQSRELSQR-HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 401
           + +D QS+E+SQR H  +   ++     + K   ++A      R  +W N++T H D   
Sbjct: 380 LRKDAQSQEMSQRLHKKQDGGRVGGSTIKSKFPEIVALAIENARIGEWENIITAHKDEKF 439

Query: 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 461
           A  W ++N  +G        +    VK+  +S CGNF  +G++ G I  +N+QSGI R  
Sbjct: 440 ARTWDMRNKRVGRWTFDTTDDG--FVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKK 497

Query: 462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI 521
           Y          H   V G++ D  N  M+S G  G +  +DF    L  + ++   +  +
Sbjct: 498 Y--------KLHKRAVTGISLDGMNRKMVSCGLDGIVGFYDFNKSTLLGKLKLDAPITAM 549

Query: 522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSL 581
           VYHR + L A   DDL I + D V  R+VR+  GH++RIT F FS +G+W++S+ +D ++
Sbjct: 550 VYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTI 609

Query: 582 RIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDS--NID 639
           R WD+     ID I VD   T +  SPN D+LAT HV  NG+ +W NR  F   S   ID
Sbjct: 610 RTWDLPTGGCIDGIIVDNVATNVKFSPNGDLLATTHVTGNGICIWTNRAQFKTVSTRTID 669

Query: 640 SYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQI-PDLVTLS 698
                 E   + +PS +SV G     S   + +  + +    F   T  +QI  +L+TLS
Sbjct: 670 E----SEFARMALPS-TSVRGNDSMLSGALESNGGEDLNDIDFNTYTSLEQIDKELLTLS 724

Query: 699 LLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILF------------ 746
           + P+S+  +L++LD+I+ R+KP E PKK EK PFFL     LSGE +             
Sbjct: 725 IGPRSKMNTLLHLDVIRKRSKPKEAPKKSEKLPFFL----QLSGEKVGDEASVREGIAHE 780

Query: 747 KPSESTKEDTESLK------VGNKTKPDIPV---SQFIQLLHSCAEMKNFSAFTDYIKSL 797
            P E  + D E+ K        NK K    +   S F + L   ++ K++S+    + + 
Sbjct: 781 TPEEIHRRDQEAQKKLDAEEQMNKFKVTGRLGFESHFTKQLREGSQSKDYSSLLATLINF 840

Query: 798 SPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFL 857
           SP+ +D+E+R L   +  D            I   +D L   +    NFE  +  + L  
Sbjct: 841 SPAAVDLEIRSLNSFEPFDE-----------IVWFIDALTQGLKSNKNFELYETFMSLLF 889

Query: 858 KIHGETVRCHTKLQDKARKL 877
           K HG+ +  + K QD A  L
Sbjct: 890 KAHGDVIHANNKNQDIASAL 909

Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 127/591 (21%), Positives = 232/591 (39%), Gaps = 79/591 (13%)

Query: 39   HIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNL 98
            ++Y    L+L+   P+    IR L S   +T    G  IA+V+  ++ A   R   +   
Sbjct: 734  YLYWLEALSLLRALPEGINAIRQLESLLGHTI--RGRLIAIVRDGYRFALSYRMIIEKAP 791

Query: 99   LLLFGEHILSIDIDGNMFIWAFKGIEEN-LAPVGHVKLD-DKFTPTCIMHPDTYLN---- 152
            L  +   ++    D +M    FK  E   ++ +  V+ + +  T T   H  + L+    
Sbjct: 792  LQAYTSALVFAPTD-SMIKKIFKKEEPGWISTISVVEAEWNACTQTLEGHGSSVLSVAFS 850

Query: 153  ----KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVH 208
                +V  GS + ++++W+ ++       +G G S+ S   SP  + VA G  D  I + 
Sbjct: 851  ADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDKTIKI- 909

Query: 209  NVRYDEELVTFTHSMRG---AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE 265
               +D    T T ++ G    V ++AFS DGQ  +ASG+    I IW+         + E
Sbjct: 910  ---WDAASGTCTQTLEGHGGRVQSVAFSPDGQ-RVASGSDDHTIKIWDAASGTCTQTL-E 964

Query: 266  AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
             H ++++S+ F  +   + S S D +IK+W  DT  G     +   GH      + F  +
Sbjct: 965  GHGSSVLSVAFSPDGQRVASGSGDKTIKIW--DTASG--TCTQTLEGHGGSVWSVAFSPD 1020

Query: 326  GRHILSAGQDRAFRLFSVIQDQQSRELSQRH-------VAKRARKLKMKEEE--LKLKPV 376
            G+ + S   D+  +++       ++ L            +   +++    ++  +K+   
Sbjct: 1021 GQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIWDA 1080

Query: 377  IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG 436
            ++  C +  E         H D+    VW +                         S  G
Sbjct: 1081 VSGTCTQTLEG--------HGDS----VWSV-----------------------AFSPDG 1105

Query: 437  NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496
                 G+  G I+ ++  SG           ++   H G V  VA       + S    G
Sbjct: 1106 QRVASGSIDGTIKIWDAASG--------TCTQTLEGHGGWVHSVAFSPDGQRVASGSIDG 1157

Query: 497  DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGL-LATVADDLVIRLFDVVALRMVRKFEG 555
             IK+WD          E     V+ V    +G  +A+ + D  I+++D  +    +  EG
Sbjct: 1158 TIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEG 1217

Query: 556  HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSL 606
            H   +    FS DG+ + S   D +++IWD         ++V  + T LS 
Sbjct: 1218 HGGWVQSVAFSPDGQRVASGSSDNTIKIWDTASGTCTQTLNVGSTATCLSF 1268

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 199/467 (42%), Gaps = 57/467 (12%)

Query: 195  VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254
             +A G  D  I + +   D  L    +    AV +++FS DGQ + ASG S   I +W  
Sbjct: 1086 TIASGSLDKTIKLWS--RDGRLFRTLNGHEDAVYSVSFSPDGQTI-ASGGSDKTIKLWQT 1142

Query: 255  EKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 314
                L   I   H+  + +++F  +   L SAS+D+SIK+W  DTT G  +LL   +GHS
Sbjct: 1143 SDGTLLKTI-TGHEQTVNNVYFSPDGKNLASASSDHSIKLW--DTTSG--QLLMTLTGHS 1197

Query: 315  APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE---EL 371
            A  + +RF  +G+ I +  +D+  +L+             R   K  + L   ++    L
Sbjct: 1198 AGVITVRFSPDGQTIAAGSEDKTVKLW------------HRQDGKLLKTLNGHQDWVNSL 1245

Query: 372  KLKP---VIAFDCAEIRERDW-------CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421
               P    +A   A+   + W          +  H D+    VW +     G+ I     
Sbjct: 1246 SFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHNDS----VWDVNFSSDGKAIASASR 1301

Query: 422  ENPTAVKACTISACGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSER----------SN 470
            +N   +K             G +GG +   F   S I   + LD + R            
Sbjct: 1302 DN--TIKLWNRHGIELETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQRPLISPLEV 1359

Query: 471  YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL 530
             A N  V  V+     +++ +AG  G+I++W  +   L        ++  I +     L+
Sbjct: 1360 LAGNSGVYAVSFLHDGSIIATAGADGNIQLWHSQDGSLLKTLPGNKAIYGISFTPQGDLI 1419

Query: 531  ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590
            A+   D  ++++ V   + ++   GH + +    FS DGK L S+  D ++++W+V   +
Sbjct: 1420 ASANADKTVKIWRVRDGKALKTLIGHDNEVNKVNFSPDGKTLASASRDNTVKLWNVSDGK 1479

Query: 591  QIDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGD 635
                +  H D  +  +S SP+  ++A+A  D+  + LW +   FSG+
Sbjct: 1480 FKKTLKGHTD-EVFWVSFSPDGKIIASASADKT-IRLWDS---FSGN 1521

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 118/528 (22%), Positives = 221/528 (41%), Gaps = 54/528 (10%)

Query: 103  GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS 162
            GE + S   D  + +W  +         GH      +       PD   N +   + + +
Sbjct: 738  GETLASASGDKTIKLWDIQDGTCLQTLTGHTD----WVRCVAFSPDG--NTLASSAADHT 791

Query: 163  LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS 222
            ++LW++S  K L   K     + S   S     +A G  D  I + N    E L T+   
Sbjct: 792  IKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYI-G 850

Query: 223  MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV 282
               +V ++A+S D + +L SG+    I +W+ +       +   H N + S+ F  +   
Sbjct: 851  HTNSVYSIAYSPDSK-ILVSGSGDRTIKLWDCQTHICIKTL-HGHTNEVCSVAFSPDGQT 908

Query: 283  LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLF 341
            L   S D S+++W   T     + L+   G++   L + F  + R IL++G  D+  +L+
Sbjct: 909  LACVSLDQSVRLWNCRT----GQCLKAWYGNTDWALPVAFSPD-RQILASGSNDKTVKLW 963

Query: 342  SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 401
                D Q+            + +   E        IAF        D   + +   D++ 
Sbjct: 964  ----DWQT-----------GKYISSLEGHTDFIYGIAF------SPDSQTLASASTDSSV 1002

Query: 402  AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 461
                RL N   G+   +   E+   V A      G     G+A   ++ +N+ +G    +
Sbjct: 1003 ----RLWNISTGQ-CFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKT 1057

Query: 462  YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVK 520
               +SE     H+ +++G+A      L+ SA     +++WD   GR +         +  
Sbjct: 1058 ---LSE-----HSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYS 1109

Query: 521  IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS 580
             ++     ++AT + D  ++++D    + ++   GHT+ + D  FS DGK L S+  D +
Sbjct: 1110 AIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQT 1169

Query: 581  LRIWDVILAR--QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
            +RIWDV   +   I   H  + +++++ SP+ +V+A+   DQ  V +W
Sbjct: 1170 VRIWDVNTGKCHHICIGHTHL-VSSVAFSPDGEVVASGSQDQT-VRIW 1215

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 83.6 bits (205), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 93/452 (20%), Positives = 185/452 (40%), Gaps = 42/452 (9%)

Query: 157  GSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL 216
            GS + +++LW+IS+   LY  +G  S + S V SP   ++A G  D  + + ++     L
Sbjct: 1050 GSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCL 1109

Query: 217  VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF 276
             T        V  L FS +G  L A+G+S  ++ +W++  ++    + + H N + ++ F
Sbjct: 1110 YTL-QGYTSWVRFLVFSPNGVTL-ANGSSDQIVRLWDISSKKCLYTL-QGHTNWVNAVAF 1166

Query: 277  FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336
              +   L S S D ++++W   ++    + L    GH++    + F  +G  + S   D+
Sbjct: 1167 SPDGATLASGSGDQTVRLWDISSS----KCLYILQGHTSWVNSVVFNPDGSTLASGSSDQ 1222

Query: 337  AFRLFSVIQDQQSRELSQRHVA----------KRARKLKMKEEELKLKPVIAFDCAEIRE 386
              RL+  I   +     Q H +                   ++ ++L  + +  C    +
Sbjct: 1223 TVRLWE-INSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQ 1281

Query: 387  --RDWCNVVTCHMDTAQ---------AYVWRLQNFVLGEHILRPCPENPTAVKACTISAC 435
               +W N V  + D +            +W + +       L     + + V + T S  
Sbjct: 1282 GHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISS----SKCLHTFQGHTSWVSSVTFSPD 1337

Query: 436  GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 495
            G     G+    +  +++ SG    ++L         H   V  V       ++ S    
Sbjct: 1338 GTMLASGSDDQTVRLWSISSGECLYTFL--------GHTNWVGSVIFSPDGAILASGSGD 1389

Query: 496  GDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 554
              +++W    G+ L +       +  IV+     LLA+ +DD  +RL+++ +   +    
Sbjct: 1390 QTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLH 1449

Query: 555  GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
            GH + +    FS DG  L S   D ++++WDV
Sbjct: 1450 GHINSVRSVAFSSDGLILASGSDDETIKLWDV 1481

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q55563|Y163_SYNY3 Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0163 PE=4 SV=1

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 136/554 (24%), Positives = 218/554 (39%), Gaps = 114/554 (20%)

Query: 103  GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL--DDKFTPTCIMHPDTYLNKVIVGSQE 160
            G+ +L+   DG   +W  +G E  L   GH     + +F+P            ++  S +
Sbjct: 1149 GQILLTASRDGTARLWDLEGREIGLCQ-GHTSWVRNAQFSPDG--------QWIVTCSAD 1199

Query: 161  GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220
            G+ +LW++S++      KG  + +++ + SP    +    SDG   V + R+ + L T  
Sbjct: 1200 GTARLWDLSSQC-FAVLKGHQNWVNNALWSPDGQHIITSSSDGTARVWS-RHGKCLGTLR 1257

Query: 221  ---HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF 277
               H++ GA     FS DGQ ++ + ++     +W  E   L   I   H   +    F 
Sbjct: 1258 GHDHNIHGA----RFSLDGQKIV-TYSTDNTARLWTKEGTLL--TILRGHQKEVYDADFS 1310

Query: 278  ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337
            A+   + + SAD + + W  D +  D   L   +GHS       F   G  +L+  +D+ 
Sbjct: 1311 ADGRFVFTVSADQTARQW--DISQKDTITL---TGHSHWVRNAHFNPKGDRLLTVSRDKT 1365

Query: 338  FRLFS-------VIQDQQS--REL-----SQRHVAKRARKLKMKEEEL--KLKPVIAFDC 381
             RL++       V+ D Q   RE       Q  V   A K       L  KL  +     
Sbjct: 1366 ARLWTTEGECVAVLADHQGWVREGQFSPDGQWIVTGSADKTAQLWNVLGKKLTVLRGHQD 1425

Query: 382  AEIRER---DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 438
            A +  R   D   +VT   D   A VW      L   +LR   +N   + A   SA G F
Sbjct: 1426 AVLNVRFSPDSQYIVTASKD-GTARVWNNTGRELA--VLRHYEKN---IFAAEFSADGQF 1479

Query: 439  AVLG----TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY 494
             V      TAG W E    + GI RG            H G V      + +  +++A  
Sbjct: 1480 IVTASDDNTAGIW-EIVGREVGICRG------------HEGPVYFAQFSADSRYILTASV 1526

Query: 495  HGDIKVWDFKGRDL-----------KSR-------------------WEVGCSLVKIVYH 524
                ++WDF GR L           ++R                   W+     V ++Y 
Sbjct: 1527 DNTARIWDFLGRPLLTLAGHQSIVYQARFSPEGNLIATVSADHTARLWDRSGKTVAVLYG 1586

Query: 525  RVNGLLATV------------ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL 572
               GL+ TV            ++D   RL+D+   R +   EGH + +    FS DG+W+
Sbjct: 1587 H-QGLVGTVDWSPDGQMLVTASNDGTARLWDLSG-RELLTLEGHGNWVRSAEFSPDGRWV 1644

Query: 573  LSSGMDGSLRIWDV 586
            L+S  DG+ ++W V
Sbjct: 1645 LTSSADGTAKLWPV 1658

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q6NVM2|KTNB1_XENTR Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 8/194 (4%)

Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213
           ++ GSQ GSL++W++   K L    G  +++ S    P  D VA G  D  I + +VR  
Sbjct: 78  IVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRK 137

Query: 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS 273
             +  +    + AV  L FS DG+  LAS +    + +W+L   ++ + + E H   +  
Sbjct: 138 GCVFRYKGHTQ-AVRCLRFSPDGK-WLASASDDHSVKLWDLTAGKMMAELSE-HKGPVNI 194

Query: 274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 333
           + F  NE +L S SAD +++ W  +      +L+    G + P   I F ++G  I   G
Sbjct: 195 IEFHPNEYLLASGSADRTVRFWDLEKF----QLIGCTEGETIPVRAILFSSDGGCIFCGG 250

Query: 334 QDRAFRLFSVIQDQ 347
           +D A R++    DQ
Sbjct: 251 RD-ALRVYGWEPDQ 263

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus tropicalis (taxid: 8364)

>sp|Q6PH57|GBB1_DANRE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Danio rerio GN=gnb1 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 16/235 (6%)

Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITANIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                S + +C  +P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152

Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  + Q+     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQ-QTTTFAGHTGDVMSLSLAPDTRLFVSGACDASAK 209

Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	907
255587831	906	WD-repeat protein, putative [Ricinus com	0.995	0.996	0.824	0.0
225440418	905	PREDICTED: uncharacterized WD repeat-con	0.995	0.997	0.822	0.0
224087343	910	predicted protein [Populus trichocarpa]	0.997	0.994	0.814	0.0
356527435	907	PREDICTED: WD repeat-containing protein	0.996	0.996	0.789	0.0
356496224	906	PREDICTED: uncharacterized WD repeat-con	0.996	0.997	0.778	0.0
449470306	891	PREDICTED: uncharacterized WD repeat-con	0.980	0.997	0.788	0.0
449507519	891	PREDICTED: uncharacterized WD repeat-con	0.980	0.997	0.787	0.0
18412751	910	transducin/WD40 domain-containing protei	0.997	0.994	0.760	0.0
297813873	911	transducin family protein [Arabidopsis l	0.997	0.993	0.766	0.0
4325344	931	similar to beta-transducins (Pfam: PF004	0.997	0.972	0.737	0.0

>gi|255587831|ref|XP_002534411.1| WD-repeat protein, putative [Ricinus communis] gi|223525346|gb|EEF27972.1| WD-repeat protein, putative [Ricinus communis]

 Score = 1575 bits (4078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 750/910 (82%), Positives = 835/910 (91%), Gaps = 7/910 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYIT+SVPFSVQRLGTE FVTVSVGKAF +YNCAKLNLVLV PQLP KIR
Sbjct: 1   MGIFEPFRAIGYITTSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVSPQLPHKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYRD+TFAAY NHIAV KR+ QVATWSRHSAKVNLLLLFG+HI+S+D++GNMFIW F
Sbjct: 61  ALASYRDFTFAAYANHIAVFKRSQQVATWSRHSAKVNLLLLFGDHIISVDVNGNMFIWGF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIE NLAP+GH+ LD+ FTPTC+MHPDTYLNKV+VGSQEG+LQLWNISTKKKLYEFKGW
Sbjct: 121 KGIENNLAPIGHIMLDNNFTPTCLMHPDTYLNKVVVGSQEGTLQLWNISTKKKLYEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            S I+SCVSSPALDV+AVGC+DGKIHVHN++ D+ELVTF+HS RGAVTAL FS+DGQPLL
Sbjct: 181 NSGITSCVSSPALDVIAVGCADGKIHVHNIQCDDELVTFSHSTRGAVTALCFSTDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG+SSGVISIWNLEKRRLQ+VIREAHDN+IISLHFFANEPVLMS SADNSIKMWIFDTT
Sbjct: 241 ASGSSSGVISIWNLEKRRLQTVIREAHDNSIISLHFFANEPVLMSGSADNSIKMWIFDTT 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPP CIRFYANGRHILSAGQDRAFRLFS+IQDQQSRELSQRH++KR
Sbjct: 301 DGDPRLLRFRSGHSAPPHCIRFYANGRHILSAGQDRAFRLFSIIQDQQSRELSQRHISKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC
Sbjct: 361 AKKLRLKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKACTISACGNFAV+GTAGGWIERFNLQSGISRGSY+D+SE+S+ AH GEVVGV
Sbjct: 421 PENPTPVKACTISACGNFAVIGTAGGWIERFNLQSGISRGSYVDVSEKSSCAHEGEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGYHGD+KVWDFKG +LKSRWEVGCSLV+IVYHR+NGLLATVADDLVIR
Sbjct: 481 ACDSTNTLMISAGYHGDVKVWDFKGLELKSRWEVGCSLVQIVYHRLNGLLATVADDLVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFDVVALRMVRKFEGHTDR+TD CFSEDGKWLLSS MDG+LRIWDVILARQIDAIHVDV 
Sbjct: 541 LFDVVALRMVRKFEGHTDRVTDLCFSEDGKWLLSSSMDGTLRIWDVILARQIDAIHVDVP 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLS N+D+LAT HVDQNGVYLWVN+ MFSG S++DSYASGKE+VSVKMPSVSSVEG
Sbjct: 601 ITALSLSQNLDILATTHVDQNGVYLWVNQSMFSGVSSVDSYASGKEVVSVKMPSVSSVEG 660

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKP 720
            + ++S +P +  T      +  LP F QQ+P+LVTLSLLP+SQWQ LINLDIIK RNKP
Sbjct: 661 SEAQDSDKPTMQPTQY--DGASHLPVFNQQMPELVTLSLLPRSQWQGLINLDIIKVRNKP 718

Query: 721 IEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTES---LKVGNKTKPDIPVSQFIQL 777
           IEPPKKPE APFFLPS+PSLSGEILFKPSE+  E+  +   ++  N    D+P SQF+QL
Sbjct: 719 IEPPKKPENAPFFLPSIPSLSGEILFKPSETMNEEKNTSADVEEHNHRHVDLPPSQFLQL 778

Query: 778 LHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLI 837
           L S A+M+NFSAFTDYIK LSPSTLD+ELRMLQIID D   +L+KRPE+L+IELLLDY I
Sbjct: 779 LQSSAKMENFSAFTDYIKGLSPSTLDLELRMLQIIDDDG--QLEKRPEFLAIELLLDYFI 836

Query: 838 HEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARC 897
           HEISCRNNFEF+QA+IRLFLKIHGET+RC +KLQDKARKLL+ Q AVWQ++DK+FQS RC
Sbjct: 837 HEISCRNNFEFVQAIIRLFLKIHGETIRCQSKLQDKARKLLDAQCAVWQRVDKLFQSTRC 896

Query: 898 VVSFLSNSQL 907
           +V+FLSNSQ 
Sbjct: 897 MVTFLSNSQF 906

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440418|ref|XP_002269448.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07 isoform 1 [Vitis vinifera] gi|297740341|emb|CBI30523.3| unnamed protein product [Vitis vinifera]

 Score = 1570 bits (4065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/909 (82%), Positives = 829/909 (91%), Gaps = 6/909 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKA+ IYNCAKLNLVLVGPQLPKKIR
Sbjct: 1   MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAWQIYNCAKLNLVLVGPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYRDYTFAAYGN IAV KRAHQVATWSRH+AKVNLLLLFGE ILSID+ GNMF+WAF
Sbjct: 61  ALASYRDYTFAAYGNDIAVFKRAHQVATWSRHNAKVNLLLLFGEQILSIDVGGNMFMWAF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGI++NLAP+GHV L+DKF+P+CIMHPDTYLNKVI+GS+EGSLQLWNISTK+KLYEFKGW
Sbjct: 121 KGIQQNLAPIGHVMLEDKFSPSCIMHPDTYLNKVILGSEEGSLQLWNISTKQKLYEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            SSI  CVSSPALDVVAVGC+DG IH+HN+RYDEE+VTF+HS RGAVTAL+FS+DG+PL+
Sbjct: 181 KSSICCCVSSPALDVVAVGCADGTIHIHNIRYDEEIVTFSHSTRGAVTALSFSTDGRPLV 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEKRRLQSVIREAHD++IISLHFFANEPVLMS+SADNSIKMWIFDT+
Sbjct: 241 ASGGSSGVISIWNLEKRRLQSVIREAHDSSIISLHFFANEPVLMSSSADNSIKMWIFDTS 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCI FYANGRH+LSAGQDRAFRLFSVIQDQQSRELSQRHV KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCISFYANGRHVLSAGQDRAFRLFSVIQDQQSRELSQRHVTKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++KEEE+KLKPVIAFD AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLRVKEEEIKLKPVIAFDFAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PEN + VKAC ISACGNFAVLGTAGGWIERFNLQSGISRGSY+D+SER + AH+GEVVGV
Sbjct: 421 PENQSPVKACAISACGNFAVLGTAGGWIERFNLQSGISRGSYVDLSERRSCAHDGEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGYHGDIKVWDFKGR+LKSRWE+GC++VKIVYHR NGLLAT  DDLVIR
Sbjct: 481 ACDSTNTLMISAGYHGDIKVWDFKGRELKSRWEIGCAVVKIVYHRSNGLLATATDDLVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFDVVALRMVRKFEGH DR+TD CFSEDGKWLL+S MDG+LRIWDVILARQIDAIHVDVS
Sbjct: 541 LFDVVALRMVRKFEGHIDRVTDLCFSEDGKWLLTSSMDGTLRIWDVILARQIDAIHVDVS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           +TALSLSPNMDVLAT HVDQNGVYLWVN+ MFSG SNIDSYASGKE+VSVK+PSVSS EG
Sbjct: 601 VTALSLSPNMDVLATTHVDQNGVYLWVNQTMFSGSSNIDSYASGKEVVSVKLPSVSSTEG 660

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKP 720
              ++S +PD++      +D F  P F ++IPDLVTLSLLPKSQWQSLINLDIIK RNKP
Sbjct: 661 SH-KDSEKPDLNHLQF--RDDFQNPHFHEKIPDLVTLSLLPKSQWQSLINLDIIKIRNKP 717

Query: 721 IEPPKKPEKAPFFLPSVPSLSGEILFKPSE--STKEDTESLKVGNKTKPDIPVSQFIQLL 778
           IEPP K EKAPFFLPSVP+LSG+I+F+PSE  S K   E  ++ N ++ D+P SQF+QLL
Sbjct: 718 IEPPTKAEKAPFFLPSVPTLSGQIVFEPSEISSEKRVAEGDELEN-SRSDLPQSQFLQLL 776

Query: 779 HSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIH 838
            S A  K+FS FTDYIKSLSPSTLD+ELRMLQIID D+ QE D RP+   IELLLDY IH
Sbjct: 777 QSSAVKKSFSVFTDYIKSLSPSTLDVELRMLQIIDDDNEQEPDTRPDLFPIELLLDYFIH 836

Query: 839 EISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCV 898
           EISCRNNFEFIQAVIRLFLKIHGET+R  + LQDKA+KLLEVQ AVWQ +DK+FQS+RC+
Sbjct: 837 EISCRNNFEFIQAVIRLFLKIHGETIRRQSNLQDKAKKLLEVQCAVWQSVDKLFQSSRCM 896

Query: 899 VSFLSNSQL 907
           V+FLSNSQ 
Sbjct: 897 VTFLSNSQF 905

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087343|ref|XP_002308129.1| predicted protein [Populus trichocarpa] gi|222854105|gb|EEE91652.1| predicted protein [Populus trichocarpa]

 Score = 1565 bits (4052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 743/912 (81%), Positives = 828/912 (90%), Gaps = 7/912 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYIT+ VPFSVQRLGTE FVTVSVGKAF +YNCAKL LV+V PQLP KIR
Sbjct: 1   MGIFEPFRAIGYITTGVPFSVQRLGTETFVTVSVGKAFQVYNCAKLTLVIVSPQLPHKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALA YRD+TF AY  HIAV KRAHQV  WSRHSAKVN L++FG++++S+D+DGN+FIW F
Sbjct: 61  ALACYRDFTFVAYATHIAVFKRAHQVTLWSRHSAKVNSLMVFGDYVISVDVDGNLFIWGF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KG++E+  PVGH+   DKFTPTC+MHPDTYLNKV++GSQEG LQLWN+STKK LYEFKGW
Sbjct: 121 KGLDESNVPVGHILFGDKFTPTCMMHPDTYLNKVLIGSQEGGLQLWNVSTKKMLYEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
           GSS++SCVSSPALDVVAVGC DGKIHVHN+RYDEE+VTF HSMRGAVT+L+FS+DGQPLL
Sbjct: 181 GSSVTSCVSSPALDVVAVGCVDGKIHVHNIRYDEEVVTFVHSMRGAVTSLSFSTDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEKR+LQSV+REAHD++IISLHF ANEPVLMS+SADNSIK+WIFDTT
Sbjct: 241 ASGGSSGVISIWNLEKRKLQSVVREAHDSSIISLHFLANEPVLMSSSADNSIKIWIFDTT 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV+GEHILRPC
Sbjct: 361 AKKLRVKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVIGEHILRPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PEN T VKACTISACGNFA+LGTAGGWIERFNLQSGISRGSY+D+SER + AH  EVVGV
Sbjct: 421 PENLTPVKACTISACGNFAILGTAGGWIERFNLQSGISRGSYMDVSERGSCAHESEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNT MISAGYHGD+KVWDFKGR LKSRWEVGCSLVKIVYHR+NGLLATVADD VIR
Sbjct: 481 ACDSTNTQMISAGYHGDVKVWDFKGRALKSRWEVGCSLVKIVYHRLNGLLATVADDFVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFD VALRMVRKFEGH DRITD CFSEDGKWLLSS MDG+LRIWDVILARQIDA+HVDVS
Sbjct: 541 LFDAVALRMVRKFEGHADRITDLCFSEDGKWLLSSSMDGTLRIWDVILARQIDAVHVDVS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMDVLAT HVDQNGVYLWVN+ MFSG SNIDSYASGKE+V+VK+PS+SSVEG
Sbjct: 601 ITALSLSPNMDVLATTHVDQNGVYLWVNQSMFSGASNIDSYASGKEVVNVKLPSLSSVEG 660

Query: 661 --CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARN 718
              ++E++ +P V+++  V  +    P F QQIPDLVTLSLLPKSQWQSLINLDIIK RN
Sbjct: 661 SNVENEDTEKPIVNQS--VSNEVSTFPAFSQQIPDLVTLSLLPKSQWQSLINLDIIKVRN 718

Query: 719 KPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTK-EDTESLKV-GNKTKPDIPVSQFIQ 776
           KPIEPPKKPEKAPFFLPSVPSLSGEILFKPSE    EDT+  K   +K K  IP +QF++
Sbjct: 719 KPIEPPKKPEKAPFFLPSVPSLSGEILFKPSEPVDGEDTKPDKAESDKRKLGIPETQFLE 778

Query: 777 LLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQII-DHDDHQELDKRPEYLSIELLLDY 835
           LL S +EMKNFSAFT+YIK LSPS LDMELRM QII + +D +EL KRPE++SIELLLDY
Sbjct: 779 LLQSSSEMKNFSAFTEYIKGLSPSNLDMELRMFQIIDEDEDEEELVKRPEFISIELLLDY 838

Query: 836 LIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSA 895
            IHEISCRNNFEF+QAV RLFLKIHGET+RC++KLQDKARKLL+ QSAVWQ++DK+FQSA
Sbjct: 839 FIHEISCRNNFEFVQAVTRLFLKIHGETIRCNSKLQDKARKLLDTQSAVWQRVDKLFQSA 898

Query: 896 RCVVSFLSNSQL 907
           RC+V+FLSNSQ 
Sbjct: 899 RCMVTFLSNSQF 910

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527435|ref|XP_003532316.1| PREDICTED: WD repeat-containing protein 36-like [Glycine max]

 Score = 1506 bits (3899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/910 (78%), Positives = 811/910 (89%), Gaps = 6/910 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEPY+AIG ITSSVPFSVQRLGTE F+TVSVGKAF ++NCAKLNLVLVGPQLPKKI 
Sbjct: 1   MGIFEPYRAIGCITSSVPFSVQRLGTETFLTVSVGKAFQVFNCAKLNLVLVGPQLPKKIS 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYR+YTFAAYGN+IAV KRAHQVATWS H+AKV LLLLFG+HI+S+D  GNMF+W F
Sbjct: 61  ALASYREYTFAAYGNNIAVFKRAHQVATWSSHNAKVKLLLLFGDHIVSVDARGNMFLWPF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGI+ENL P GH+ LD+KF+P+CIMHPDTYLNKV+VGS++G +QLWNISTKKK++EFKGW
Sbjct: 121 KGIDENLFPFGHIMLDEKFSPSCIMHPDTYLNKVLVGSEQGPMQLWNISTKKKIFEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            S IS CVSSPALDVVA+GC+DG+IHVHN+RYDEELVTFTHS RG+VTAL+FS+DGQPLL
Sbjct: 181 NSPISCCVSSPALDVVAIGCTDGRIHVHNIRYDEELVTFTHSTRGSVTALSFSTDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEK+RLQSV+REAHD+ I SLHFFANEPVLMS+SADNSIKMWIFDT+
Sbjct: 241 ASGGSSGVISIWNLEKKRLQSVVREAHDSVITSLHFFANEPVLMSSSADNSIKMWIFDTS 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCI+FYANGRHILSAGQDRAFRLFSV+QDQQSRELSQRHV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIKFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQRHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KLK+KEEE+KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL PC
Sbjct: 361 AKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILNPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKAC ISACGNF  LGTAGGWIERFNLQSGI RG+Y+D+SE  N AH+GEVVGV
Sbjct: 421 PENPTPVKACAISACGNFVFLGTAGGWIERFNLQSGIRRGAYIDISESRNCAHDGEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGY GDIKVW+FK RDLK+RW+V CS+VKIVYHR NGLLATVADDL I+
Sbjct: 481 ACDSTNTLMISAGYKGDIKVWNFKERDLKTRWDVDCSIVKIVYHRYNGLLATVADDLTIQ 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFDVVALR+VRKFEGHTDRITD CFSEDGKWLLSS MDGSLRIWDVILARQIDAIHVDV 
Sbjct: 541 LFDVVALRLVRKFEGHTDRITDLCFSEDGKWLLSSSMDGSLRIWDVILARQIDAIHVDVP 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMD+LATAHVDQ+G+YLWVN+ MFS  SN+DSYASGKE+VSVK+PS+SS E 
Sbjct: 601 ITALSLSPNMDILATAHVDQSGIYLWVNQAMFSSTSNVDSYASGKEVVSVKLPSISSAEH 660

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKP 720
            +DE+  +P        PKD+    T  +QIP+LVTLSLLPKSQW +LINLDIIK RNKP
Sbjct: 661 SRDEHYDEP---MNASQPKDALYFSTQDKQIPELVTLSLLPKSQWLNLINLDIIKVRNKP 717

Query: 721 IEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGN--KTKPDIPVSQFIQLL 778
           IEPPKKPEKAPFFLPSVPSLSGEILF+  + + ++ +    G   KT+ D+P S+F+ LL
Sbjct: 718 IEPPKKPEKAPFFLPSVPSLSGEILFESGKLSLKENDGTDDGKQMKTRLDMPQSRFLYLL 777

Query: 779 HSCAEMKNFSAFTDYIKSLSPSTLDMELRML-QIIDHDDHQELDKRPEYLSIELLLDYLI 837
               E  N++AFTDYIK LSPSTLDMELRM   I D DD QE +KRPE +SIE LLDY I
Sbjct: 778 QCSKETDNYAAFTDYIKGLSPSTLDMELRMFQIIDDDDDQQEAEKRPELVSIEWLLDYFI 837

Query: 838 HEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARC 897
           HE+SCRNNFEF+QAVIRLFLKIHGET+R  + LQ+KARKLL++Q  VWQ++DK+FQS+RC
Sbjct: 838 HELSCRNNFEFLQAVIRLFLKIHGETIRQQSCLQEKARKLLDIQCMVWQRVDKLFQSSRC 897

Query: 898 VVSFLSNSQL 907
           V++FLSNSQ+
Sbjct: 898 VIAFLSNSQI 907

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496224|ref|XP_003516969.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07-like [Glycine max]

 Score = 1506 bits (3898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 708/909 (77%), Positives = 808/909 (88%), Gaps = 5/909 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEPY+AIG ITSSVPFSVQRLGTE F+TVSVGKAF I+NCAKLNLVLVGPQLPKKI 
Sbjct: 1   MGIFEPYRAIGCITSSVPFSVQRLGTETFLTVSVGKAFQIFNCAKLNLVLVGPQLPKKIS 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYR+YTFAAYGN+IAV KRAHQ ATWS H+AKV LLLLFG+HI+S+D  GNMF+W F
Sbjct: 61  ALASYREYTFAAYGNNIAVFKRAHQFATWSSHNAKVKLLLLFGDHIVSVDARGNMFLWPF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGI+EN  P GH+ LD+KF+P+CIMHPDTYLNKV++GS++G +QLWNISTKKK++EFKGW
Sbjct: 121 KGIDENHVPFGHIMLDEKFSPSCIMHPDTYLNKVLIGSEQGPMQLWNISTKKKIFEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            S IS CVSSPALDVVA+GC+DG+IHVHN+RYDEELVTFTHS RG+VT+L+FS+DGQPLL
Sbjct: 181 NSPISCCVSSPALDVVAIGCTDGRIHVHNIRYDEELVTFTHSTRGSVTSLSFSTDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEK+RLQSV+REAHD+ I SLHFFANEPVLMS+SADNS+KMWIFDT+
Sbjct: 241 ASGGSSGVISIWNLEKKRLQSVVREAHDSVITSLHFFANEPVLMSSSADNSVKMWIFDTS 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPP C++FYANGRHILSAGQDRAFRLFSV+QDQQSRELSQ HV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPFCLKFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQWHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           ARKLK+KEEE+KLKP+IAFDCAEIRERDWCNVVTCHMDTAQAY+WRLQNFVLGEHIL PC
Sbjct: 361 ARKLKLKEEEIKLKPMIAFDCAEIRERDWCNVVTCHMDTAQAYLWRLQNFVLGEHILNPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKAC ISACGNF  LGTAGGWIERFNLQSGI RG+Y+D+SE  + AH+GEVVGV
Sbjct: 421 PENPTPVKACAISACGNFVFLGTAGGWIERFNLQSGICRGAYIDISESRSCAHDGEVVGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGY GDIKVWDFK RDLK++W+VGCS+VKIVYHR NGLLATVADDL IR
Sbjct: 481 ACDSTNTLMISAGYEGDIKVWDFKERDLKTKWDVGCSVVKIVYHRYNGLLATVADDLTIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFDVVALR+VRKFEGHTDRITD CFSEDGKWLLSS MDGSLRIWDVILARQIDAI VD S
Sbjct: 541 LFDVVALRLVRKFEGHTDRITDLCFSEDGKWLLSSSMDGSLRIWDVILARQIDAIQVDAS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMD+LAT HVDQNG+YLWVN+ MFS  SN+DS ASGKE+VSV +PS+SS E 
Sbjct: 601 ITALSLSPNMDILATTHVDQNGIYLWVNQAMFSSTSNVDSCASGKEVVSVTLPSISSAEH 660

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKP 720
            +DE+  +P V+ +   PKD+   PT  +QIP+LVTLSLLPKSQWQ+LINLDIIK RNKP
Sbjct: 661 SRDEHYDEP-VNASQ--PKDALHFPTQDKQIPELVTLSLLPKSQWQNLINLDIIKVRNKP 717

Query: 721 IEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGN--KTKPDIPVSQFIQLL 778
            EPPKKPEKAPFFLPSVPSLSGEILF+  + + ++ +    G   KT+ D+P S+F+ LL
Sbjct: 718 TEPPKKPEKAPFFLPSVPSLSGEILFESGKLSIKENDGTDDGKQMKTRLDMPQSRFLYLL 777

Query: 779 HSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIH 838
               E  N++AFTDYIK LSPS+LDMELRM QIID DD QE +KRPE +SI  LLDY IH
Sbjct: 778 QCSKETDNYAAFTDYIKGLSPSSLDMELRMFQIIDDDDQQEAEKRPELVSIGWLLDYFIH 837

Query: 839 EISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCV 898
           E+S RNNFEF+QAV+RLFLKIHGET+R  + LQ+KARKLL++Q  VWQ++DK+FQS+RCV
Sbjct: 838 ELSSRNNFEFLQAVMRLFLKIHGETIRQQSCLQEKARKLLDIQCMVWQRVDKLFQSSRCV 897

Query: 899 VSFLSNSQL 907
           ++FLSNSQ+
Sbjct: 898 IAFLSNSQI 906

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470306|ref|XP_004152858.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07-like [Cucumis sativus]

 Score = 1498 bits (3879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 717/909 (78%), Positives = 798/909 (87%), Gaps = 20/909 (2%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEPY+AIGYIT+SVPFSVQRLGTE FVTVSVGKAF +YNCAKLNLVLVGPQLPKKIR
Sbjct: 1   MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYR+YTFAAYG+ IAV KRAHQVA WS H AKVNLLLLFG+HILS+DI+GNMF+W F
Sbjct: 61  ALASYREYTFAAYGSDIAVFKRAHQVANWSSHKAKVNLLLLFGDHILSVDINGNMFMWPF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIE++ +PVG V L  KF+P+CIMHPDTYLNKVI+GS EGSL+LWNIS+KKKL+EFKGW
Sbjct: 121 KGIEDSQSPVGQVILGRKFSPSCIMHPDTYLNKVILGSLEGSLELWNISSKKKLFEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            SS+  CVSSPALDVVA+GC+DGK+HVHN+RYD+EL +FTHS RG+VTAL+FSSDGQPLL
Sbjct: 181 NSSVCCCVSSPALDVVAIGCADGKVHVHNIRYDQELFSFTHSTRGSVTALSFSSDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEKRRLQSVIREAHD++I+SLHFFANEPVLMS+SADNSIKMWIFDTT
Sbjct: 241 ASGGSSGVISIWNLEKRRLQSVIREAHDSSIVSLHFFANEPVLMSSSADNSIKMWIFDTT 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KLK+KEEE+KLKPVIAFDCAEIRERDWCNVVTCH+DT QAYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHVDTPQAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKAC ISACGNFA LGT GGWIERFNLQSG SRGSYLD  E  + AH GEVVG+
Sbjct: 421 PENPTPVKACAISACGNFAFLGTEGGWIERFNLQSGASRGSYLDKMEGGSCAHVGEVVGL 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNT +ISAG HGDIKVW+FK RDLKSRWE+G S+ KIVYHRVNGLLA V DDLVIR
Sbjct: 481 ACDSTNTHVISAGVHGDIKVWNFKERDLKSRWEIGSSVAKIVYHRVNGLLAVVTDDLVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFD+VALR+VRKFEGHTDRITD  FSEDGKWLLSS MDGSLRIWDVILARQIDA+HVD S
Sbjct: 541 LFDIVALRLVRKFEGHTDRITDLSFSEDGKWLLSSSMDGSLRIWDVILARQIDALHVDAS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITA S+SPNMD+LAT HVDQNGVYLWVN+ MF+G SN+++ ASG E            E 
Sbjct: 601 ITAFSISPNMDILATTHVDQNGVYLWVNQLMFTGSSNVNTLASGMEF-----------ED 649

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKP 720
             +  S+ P+        KD   L    QQIPDL+TLSLLP+SQWQSLINLDIIK RNKP
Sbjct: 650 RVENPSNLPE-------SKDLSCLSISTQQIPDLITLSLLPRSQWQSLINLDIIKVRNKP 702

Query: 721 IEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGN--KTKPDIPVSQFIQLL 778
           IEPPKKPEKAPFFLPS+PSLSGEILFKPSES  ++ E  +V +  + K DI  SQF+QLL
Sbjct: 703 IEPPKKPEKAPFFLPSLPSLSGEILFKPSESANKEGEEKRVDSEQQKKSDITSSQFLQLL 762

Query: 779 HSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIH 838
            S +E KNFSAFTDYIK LSPSTLD+ELRMLQIID DDHQE   RPE +SIELLLDY IH
Sbjct: 763 ESSSETKNFSAFTDYIKGLSPSTLDLELRMLQIIDDDDHQEPANRPELISIELLLDYFIH 822

Query: 839 EISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCV 898
           EI+ RNNFEFIQA+IRLFLKIHGETVRC   LQ+KA+KLL+VQ++VWQ +DK+FQS+RC+
Sbjct: 823 EITYRNNFEFIQALIRLFLKIHGETVRCQLTLQEKAKKLLDVQTSVWQGLDKLFQSSRCM 882

Query: 899 VSFLSNSQL 907
           ++FLSNSQ 
Sbjct: 883 ITFLSNSQF 891

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507519|ref|XP_004163055.1| PREDICTED: uncharacterized WD repeat-containing protein C1672.07-like [Cucumis sativus]

 Score = 1497 bits (3875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 716/909 (78%), Positives = 798/909 (87%), Gaps = 20/909 (2%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEPY+AIGYIT+SVPFSVQRLGTE FVTVSVGKAF +YNCAKLNLVLVGPQLPKKIR
Sbjct: 1   MGIFEPYRAIGYITNSVPFSVQRLGTETFVTVSVGKAFQVYNCAKLNLVLVGPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYR+YTFAAYG+ IAV KRAHQVA WS H AKVNLLLLFG+HILS+DI+GNMF+W F
Sbjct: 61  ALASYREYTFAAYGSDIAVFKRAHQVANWSSHKAKVNLLLLFGDHILSVDINGNMFMWPF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIE++ +PVG V L  KF+P+CIMHPDTYLNKVI+GS EGSL+LWNIS+KKKL+EFKGW
Sbjct: 121 KGIEDSQSPVGQVILGRKFSPSCIMHPDTYLNKVILGSLEGSLELWNISSKKKLFEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
            SS+  CVSSPALDVVA+GC+DGK+HVHN+RYD+EL +FTHS RG+VTAL+FSSDGQPLL
Sbjct: 181 NSSVCCCVSSPALDVVAIGCADGKVHVHNIRYDQELFSFTHSTRGSVTALSFSSDGQPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG SSGVISIWNLEKRRLQSVIREAHD++I+SLHFFANEPVLMS+SADNSIKMWIFDTT
Sbjct: 241 ASGGSSGVISIWNLEKRRLQSVIREAHDSSIVSLHFFANEPVLMSSSADNSIKMWIFDTT 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV+KR
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KLK+KEEE+KLKPVIAFDCAEIRERDWCNVVTCH+DT QAYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLKLKEEEIKLKPVIAFDCAEIRERDWCNVVTCHVDTPQAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT VKAC ISACGNFA LGT GGWIERFNLQSG SRGSYLD  E  + AH GEVVG+
Sbjct: 421 PENPTPVKACAISACGNFAFLGTEGGWIERFNLQSGASRGSYLDKMEGGSCAHVGEVVGL 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNT +ISAG HGDIKVW+FK RDLKSRWE+G S+ KIVYHRVNGLLA V DDLVIR
Sbjct: 481 ACDSTNTHVISAGVHGDIKVWNFKERDLKSRWEIGSSVAKIVYHRVNGLLAVVTDDLVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           LFD+VALR+VRKFEGHTDRITD  FSEDGKWLLSS MDGSLRIWDVILARQIDA+HVD S
Sbjct: 541 LFDIVALRLVRKFEGHTDRITDLSFSEDGKWLLSSSMDGSLRIWDVILARQIDALHVDAS 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITA S+SPNMD+LAT HVDQNGVYLWVN+ MF+G SN+++ ASG E            E 
Sbjct: 601 ITAFSISPNMDILATTHVDQNGVYLWVNQLMFTGSSNVNTLASGMEF-----------ED 649

Query: 661 CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKP 720
             +  S+ P+        KD   L    QQIPDL+TLSLLP+SQWQSLINLDIIK RNKP
Sbjct: 650 RVENPSNLPE-------SKDLSCLSISTQQIPDLITLSLLPRSQWQSLINLDIIKVRNKP 702

Query: 721 IEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGN--KTKPDIPVSQFIQLL 778
           IEPPKKPEKAPFFLPS+PSLSGEILFKPSES  ++ E  +V +  + K DI  SQF+QLL
Sbjct: 703 IEPPKKPEKAPFFLPSLPSLSGEILFKPSESANKEGEEKRVDSEQQKKSDITSSQFLQLL 762

Query: 779 HSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIH 838
            S +E KNFSAFTDYIK LSPSTLD+ELRMLQIID DDHQE   RPE +SIELLLDY IH
Sbjct: 763 ESSSETKNFSAFTDYIKGLSPSTLDLELRMLQIIDDDDHQEPANRPELISIELLLDYFIH 822

Query: 839 EISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCV 898
           EI+ RNNFEFIQA+IRLFLKIHGETVRC   LQ+KA+KLL+V+++VWQ +DK+FQS+RC+
Sbjct: 823 EITYRNNFEFIQALIRLFLKIHGETVRCQLTLQEKAKKLLDVRTSVWQGLDKLFQSSRCM 882

Query: 899 VSFLSNSQL 907
           ++FLSNSQ 
Sbjct: 883 ITFLSNSQF 891

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412751|ref|NP_567275.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|16604679|gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gi|20465603|gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gi|332657045|gb|AEE82445.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score = 1469 bits (3804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 694/912 (76%), Positives = 815/912 (89%), Gaps = 7/912 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKAF IYNCAKLNLV++ PQLPKKIR
Sbjct: 1   MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYRDYTF A+GN IAV +RAHQVATWS+H AKV+LLL+FGEH+LS+D++GNMFIWAF
Sbjct: 61  ALASYRDYTFVAFGNEIAVFRRAHQVATWSKHVAKVDLLLVFGEHVLSLDVEGNMFIWAF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIEE+LAP+G+++L  KFTPT I+HPDTYLNKV+VGSQEG LQLWNI+TKK LY+FKGW
Sbjct: 121 KGIEEHLAPIGNLQLTGKFTPTSIVHPDTYLNKVLVGSQEGPLQLWNINTKKMLYQFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
           GSS++SCVSSPALDVVA+GC+DGKIHVHN++ DEE+VTF H+ RGAVTAL+FS+DG+PLL
Sbjct: 181 GSSVTSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFSTDGRPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVLMSASADNS+KMWIFDT 
Sbjct: 241 ASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLKMWIFDTN 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSVIQ+QQSRELSQRH+++R
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELSQRHISRR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++KEEELKLKPV++FDCAEIRERDWCNVVTCHMDTA+AYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLRLKEEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT +KAC ISACGNFAV+GTAGGWIERFNLQSGISRGSY DMSE+  YAH+GEV+GV
Sbjct: 421 PENPTPIKACAISACGNFAVVGTAGGWIERFNLQSGISRGSYFDMSEKRRYAHDGEVIGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGYHGD+KVWDFK R+LKS+W+VGCSLVKIVYHRVNGLLATVADD VIR
Sbjct: 481 ACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLVKIVYHRVNGLLATVADDFVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           L+DVV L+MVR+F GHTDRITD CFSEDGKW++SS MDGSLRIWDVILA+QID +HVDV 
Sbjct: 541 LYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWDVILAKQIDGVHVDVP 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++SYASGK++V+VK+PSVS++  
Sbjct: 601 ITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVESYASGKDVVNVKLPSVSALTS 660

Query: 661 CQ-DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNK 719
            + D++  +  +  ++ +   SF +   ++QIP+LVTLSLLPKSQWQSLINLDIIKARNK
Sbjct: 661 SEADDDMDRQVLENSEALQASSFSIS--QKQIPELVTLSLLPKSQWQSLINLDIIKARNK 718

Query: 720 PIEPPKKPEKAPFFLPSVPSLSGEILFKP--SESTKEDTESLKVGNKTKPDIPV--SQFI 775
           PIEPPKKPEKAPFFLPS+PSLSG+ILFK   SE+  E+ E+ K    +  +     S F 
Sbjct: 719 PIEPPKKPEKAPFFLPSIPSLSGDILFKANDSEADGENEENNKKDQNSMKNFDALESPFS 778

Query: 776 QLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDY 835
           + L S  + K+F  FT+Y+KSLSPS LDMELRML+IID D  +EL KRPE++ I  LLDY
Sbjct: 779 KHLKSSWDSKHFLDFTNYMKSLSPSALDMELRMLEIIDEDVEEELIKRPEFILIGQLLDY 838

Query: 836 LIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSA 895
            I+E+SC+N+FEF+QAV++LFLKIHGET+RCH  LQ+KA+KLLE QS VWQK++K+FQS 
Sbjct: 839 FINEVSCKNDFEFMQAVVKLFLKIHGETIRCHPSLQEKAKKLLETQSLVWQKMEKLFQST 898

Query: 896 RCVVSFLSNSQL 907
           RC+V+FLSNSQ 
Sbjct: 899 RCIVTFLSNSQF 910

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813873|ref|XP_002874820.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297320657|gb|EFH51079.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 1457 bits (3771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/913 (76%), Positives = 816/913 (89%), Gaps = 8/913 (0%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
           MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKAF IYNCAKLNLV++ PQLPKKIR
Sbjct: 1   MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISPQLPKKIR 60

Query: 61  ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
           ALASYRDYTFAA+GN IAV KRAHQVATWS+H AKV+LLLLFGEH+LS+D++GNMFIWAF
Sbjct: 61  ALASYRDYTFAAFGNEIAVFKRAHQVATWSKHVAKVDLLLLFGEHVLSLDVEGNMFIWAF 120

Query: 121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
           KGIEE+L+P+G+++L  KFTP+ I+HPDTYLNKV+VGSQEG LQLWNI+TKK +YEFKGW
Sbjct: 121 KGIEEHLSPIGNLQLTGKFTPSSIVHPDTYLNKVLVGSQEGPLQLWNINTKKMIYEFKGW 180

Query: 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
           GSS+SSCVSSPALDVVA+GC+DGKIHVHN++ DEE+VTF H+ RGAVTAL+FS+DG+PLL
Sbjct: 181 GSSVSSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFSTDGRPLL 240

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
           ASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVLMSASADNS+KMWIFDT 
Sbjct: 241 ASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLKMWIFDTN 300

Query: 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
           DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSVIQ+QQSRELSQRH+++R
Sbjct: 301 DGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELSQRHISRR 360

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A+KL++K+EELKLKPV++FDCAEIRERDWCNVVTCHMDTA+AYVWRLQNFVLGEHIL+PC
Sbjct: 361 AKKLRLKDEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLGEHILKPC 420

Query: 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
           PENPT +KAC ISACGNFAV+GTAGGWIERFNLQSGISRGSY DMSE+  YAH+GEV+GV
Sbjct: 421 PENPTPIKACAISACGNFAVVGTAGGWIERFNLQSGISRGSYFDMSEKRRYAHDGEVIGV 480

Query: 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
           ACDSTNTLMISAGYHGDIKVWDFK R+LKS+W++GCSLVKIVYHRVNGLLATVADD VIR
Sbjct: 481 ACDSTNTLMISAGYHGDIKVWDFKKRELKSQWDIGCSLVKIVYHRVNGLLATVADDFVIR 540

Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           L+DVVAL+MVR+F GHTDR+TD CFSEDGKWLLSS MDGSLRIWDVILA+QID +HVDV 
Sbjct: 541 LYDVVALKMVREFRGHTDRVTDLCFSEDGKWLLSSSMDGSLRIWDVILAKQIDGVHVDVP 600

Query: 601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
           ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++SYASGK++V+VK+PSVS++  
Sbjct: 601 ITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVESYASGKDVVNVKLPSVSALTS 660

Query: 661 CQ--DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARN 718
            +  D++  +  +  +  +   SF +    +QIP+LVTLSLLPKSQWQSLINLDIIKARN
Sbjct: 661 SEADDDDMERQVLENSGALQASSFSIS--HKQIPELVTLSLLPKSQWQSLINLDIIKARN 718

Query: 719 KPIEPPKKPEKAPFFLPSVPSLSGEILFKP--SESTKEDTESLKVGNKTKPDIPV--SQF 774
           KPIEPPKKPEKAPFFLPS+PSLSG+ILFK   SE+  E+ E  K    +  +     S F
Sbjct: 719 KPIEPPKKPEKAPFFLPSIPSLSGDILFKSNDSEADGENEEKNKKDQNSMKNFDALESPF 778

Query: 775 IQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLD 834
            +LL S  + K+F  FT+YIK+LSPS LDMELRML+IID D  +EL KRPE++SI  LLD
Sbjct: 779 SKLLKSSWDSKHFLDFTNYIKTLSPSALDMELRMLEIIDEDIEEELIKRPEFISIGQLLD 838

Query: 835 YLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQS 894
           Y I+E+SC+N+FEF+QAV+RLFLKIHGET+RCH  LQ+KA+KLLE QS VWQK++K+FQS
Sbjct: 839 YFINEVSCKNDFEFMQAVVRLFLKIHGETIRCHPSLQEKAKKLLETQSLVWQKMEKLFQS 898

Query: 895 ARCVVSFLSNSQL 907
            RC+V+FLSNSQ 
Sbjct: 899 TRCIVTFLSNSQF 911

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4325344|gb|AAD17343.1| similar to beta-transducins (Pfam: PF00400, Score=71.7, E=1.5e-17, N=6) [Arabidopsis thaliana] gi|7267253|emb|CAB81036.1| putative WD-repeat membrane protein [Arabidopsis thaliana]

 Score = 1438 bits (3723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/933 (73%), Positives = 809/933 (86%), Gaps = 28/933 (3%)

Query: 1   MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKK-- 58
           MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKAF IYNCAKLNLV++         
Sbjct: 1   MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISKFFLLLKP 60

Query: 59  -----IRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDG 113
                IRALASYRDYTF A+GN IAV +RAHQVATWS+H AKV+LLL+FGEH+LS+D++G
Sbjct: 61  KLPKKIRALASYRDYTFVAFGNEIAVFRRAHQVATWSKHVAKVDLLLVFGEHVLSLDVEG 120

Query: 114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK 173
           NMFIWAFKGIEE+LAP+G+++L  KFTPT I+HPDTYLNKV+VGSQEG LQLWNI+TKK 
Sbjct: 121 NMFIWAFKGIEEHLAPIGNLQLTGKFTPTSIVHPDTYLNKVLVGSQEGPLQLWNINTKKM 180

Query: 174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS 233
           LY+FKGWGSS++SCVSSPALDVVA+GC+DGKIHVHN++ DEE+VTF H+ RGAVTAL+FS
Sbjct: 181 LYQFKGWGSSVTSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFS 240

Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
           +DG+PLLASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVLMSASADNS+K
Sbjct: 241 TDGRPLLASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLK 300

Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELS 353
           MWIFDT DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSVIQ+QQSRELS
Sbjct: 301 MWIFDTNDGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELS 360

Query: 354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 413
           QRH+++RA+KL++KEEELKLKPV++FDCAEIRERDWCNVVTCHMDTA+AYVWRLQNFVLG
Sbjct: 361 QRHISRRAKKLRLKEEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLG 420

Query: 414 EHILRPCPENPTAVK--------------ACTISACGNFAVLGTAGGWIERFNLQSGISR 459
           EHIL+PCPENPT +K              AC ISACGNFAV+GTAGGWIERFNLQSGISR
Sbjct: 421 EHILKPCPENPTPIKGVFVSRNHLLLAILACAISACGNFAVVGTAGGWIERFNLQSGISR 480

Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLV 519
           GSY DMSE+  YAH+GEV+GVACDSTNTLMISAGYHGD+KVWDFK R+LKS+W+VGCSLV
Sbjct: 481 GSYFDMSEKRRYAHDGEVIGVACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLV 540

Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579
           KIVYHRVNGLLATVADD VIRL+DVV L+MVR+F GHTDRITD CFSEDGKW++SS MDG
Sbjct: 541 KIVYHRVNGLLATVADDFVIRLYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDG 600

Query: 580 SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNID 639
           SLRIWDVILA+QID +HVDV ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++
Sbjct: 601 SLRIWDVILAKQIDGVHVDVPITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVE 660

Query: 640 SYASGKEIVSVKMPSVSSVEGCQ-DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLS 698
           SYASGK++V+VK+PSVS++   + D++  +  +  ++ +   SF +   ++QIP+LVTLS
Sbjct: 661 SYASGKDVVNVKLPSVSALTSSEADDDMDRQVLENSEALQASSFSIS--QKQIPELVTLS 718

Query: 699 LLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKP--SESTKEDT 756
           LLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPS+PSLSG+ILFK   SE+  E+ 
Sbjct: 719 LLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSIPSLSGDILFKANDSEADGENE 778

Query: 757 ESLKVGNKTKPDIPV--SQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDH 814
           E+ K    +  +     S F + L S  + K+F  FT+Y+KSLSPS LDMELRML+IID 
Sbjct: 779 ENNKKDQNSMKNFDALESPFSKHLKSSWDSKHFLDFTNYMKSLSPSALDMELRMLEIIDE 838

Query: 815 DDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKA 874
           D  +EL KRPE++ I  LLDY I+E+SC+N+FEF+QAV++LFLKIHGET+RCH  LQ+KA
Sbjct: 839 DVEEELIKRPEFILIGQLLDYFINEVSCKNDFEFMQAVVKLFLKIHGETIRCHPSLQEKA 898

Query: 875 RKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL 907
           +KLLE QS VWQK++K+FQS RC+V+FLSNSQ 
Sbjct: 899 KKLLETQSLVWQKMEKLFQSTRCIVTFLSNSQF 931

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	907
TAIR|locus:2135393	910	AT4G04940 "AT4G04940" [Arabido	0.996	0.993	0.734	0.0
POMBASE|SPCC1672.07	902	SPCC1672.07 "U3 snoRNP-associa	0.861	0.865	0.352	2.1e-143
UNIPROTKB|G3X6I6	948	WDR36 "Uncharacterized protein	0.862	0.824	0.367	5.1e-138
UNIPROTKB|F1NKR5	890	WDR36 "Uncharacterized protein	0.859	0.876	0.364	1.3e-137
UNIPROTKB|F1RLI4	952	WDR36 "Uncharacterized protein	0.887	0.845	0.356	5.2e-136
UNIPROTKB|F1PNT8	891	WDR36 "Uncharacterized protein	0.862	0.877	0.357	9.8e-135
UNIPROTKB|Q8NI36	951	WDR36 "WD repeat-containing pr	0.862	0.822	0.350	6.9e-134
RGD|1586463	882	Wdr36 "WD repeat domain 36" [R	0.886	0.911	0.351	2.3e-133
ZFIN|ZDB-GENE-030131-464	904	wdr36 "WD repeat domain 36" [D	0.865	0.868	0.352	2.4e-131
FB|FBgn0038146	922	CG9799 [Drosophila melanogaste	0.961	0.945	0.317	2.1e-116

TAIR|locus:2135393 AT4G04940 "AT4G04940" [Arabidopsis thaliana (taxid:3702)]

 Score = 3562 (1258.9 bits), Expect = 0., P = 0.
 Identities = 669/911 (73%), Positives = 784/911 (86%)

Query:     1 MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             MGIFEP++AIGYITS+VPFSVQRLGTE FVTVSVGKAF IYNCAKLNLV++ PQLPKKIR
Sbjct:     1 MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISPQLPKKIR 60

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAF 120
             ALASYRDYTF A+GN IAV +RAHQVATWS+H AKV+LLL+FGEH+LS+D++GNMFIWAF
Sbjct:    61 ALASYRDYTFVAFGNEIAVFRRAHQVATWSKHVAKVDLLLVFGEHVLSLDVEGNMFIWAF 120

Query:   121 KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180
             KGIEE+LAP+G+++L  KFTPT I+HPDTYLNKV+VGSQEG LQLWNI+TKK LY+FKGW
Sbjct:   121 KGIEEHLAPIGNLQLTGKFTPTSIVHPDTYLNKVLVGSQEGPLQLWNINTKKMLYQFKGW 180

Query:   181 GXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240
             G         PALDVVA+GC+DGKIHVHN++ DEE+VTF H+ RGAVTAL+FS+DG+PLL
Sbjct:   181 GSSVTSCVSSPALDVVAIGCADGKIHVHNIKLDEEIVTFEHASRGAVTALSFSTDGRPLL 240

Query:   241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
             ASG S GVISIWNL K+RLQSVIR+AHD++IISL+F ANEPVLMSASADNS+KMWIFDT 
Sbjct:   241 ASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEPVLMSASADNSLKMWIFDTN 300

Query:   301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
             DGDPRLLRFRSGHSAPPLCIRFY+NGRHILSAGQDRAFRLFSVIQ+QQSRELSQRH+++R
Sbjct:   301 DGDPRLLRFRSGHSAPPLCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELSQRHISRR 360

Query:   361 ARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
             A+            PV++FDCAEIRERDWCNVVTCHMDTA+AYVWRLQNFVLGEHIL+PC
Sbjct:   361 AKKLRLKEEELKLKPVVSFDCAEIRERDWCNVVTCHMDTAEAYVWRLQNFVLGEHILKPC 420

Query:   421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGV 480
             PENPT +KAC ISACGNFAV+GTAGGWIERFNLQSGISRGSY DMSE+  YAH+GEV+GV
Sbjct:   421 PENPTPIKACAISACGNFAVVGTAGGWIERFNLQSGISRGSYFDMSEKRRYAHDGEVIGV 480

Query:   481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540
             ACDSTNTLMISAGYHGD+KVWDFK R+LKS+W+VGCSLVKIVYHRVNGLLATVADD VIR
Sbjct:   481 ACDSTNTLMISAGYHGDLKVWDFKKRELKSQWDVGCSLVKIVYHRVNGLLATVADDFVIR 540

Query:   541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
             L+DVV L+MVR+F GHTDRITD CFSEDGKW++SS MDGSLRIWDVILA+QID +HVDV 
Sbjct:   541 LYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWDVILAKQIDGVHVDVP 600

Query:   601 ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEG 660
             ITALSLSPNMDVLATAH DQNGVYLWVN+ MFSG  +++SYASGK++V+VK+PSVS++  
Sbjct:   601 ITALSLSPNMDVLATAHSDQNGVYLWVNQSMFSGLPSVESYASGKDVVNVKLPSVSALTS 660

Query:   661 CQ-DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNX 719
              + D++  +  +  ++ +   SF +   ++QIP+LVTLSLLPKSQWQSLINLDIIKARN 
Sbjct:   661 SEADDDMDRQVLENSEALQASSFSIS--QKQIPELVTLSLLPKSQWQSLINLDIIKARNK 718

Query:   720 XXXXXXXXXXAPFFLPSVPSLSGEILFKP--SESTKEDTESLKVG-NKTKP-DIPVSQFI 775
                       APFFLPS+PSLSG+ILFK   SE+  E+ E+ K   N  K  D   S F 
Sbjct:   719 PIEPPKKPEKAPFFLPSIPSLSGDILFKANDSEADGENEENNKKDQNSMKNFDALESPFS 778

Query:   776 QLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDY 835
             + L S  + K+F  FT+Y+KSLSPS LDMELRML+IID D  +EL KRPE++ I  LLDY
Sbjct:   779 KHLKSSWDSKHFLDFTNYMKSLSPSALDMELRMLEIIDEDVEEELIKRPEFILIGQLLDY 838

Query:   836 LIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSA 895
              I+E+SC+N+FEF+QAV++LFLKIHGET+RCH  LQ+KA+KLLE QS VWQK++K+FQS 
Sbjct:   839 FINEVSCKNDFEFMQAVVKLFLKIHGETIRCHPSLQEKAKKLLETQSLVWQKMEKLFQST 898

Query:   896 RCVVSFLSNSQ 906
             RC+V+FLSNSQ
Sbjct:   899 RCIVTFLSNSQ 909

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

POMBASE|SPCC1672.07 SPCC1672.07 "U3 snoRNP-associated protein Utp21 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 1297 (461.6 bits), Expect = 2.1e-143, Sum P(2) = 2.1e-143
 Identities = 288/816 (35%), Positives = 451/816 (55%)

Query:     3 IFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRAL 62
             I+ P+++IG+++++VPF ++  GT   VT SVG  F  Y+C KLNL+ VG QL K+I  L
Sbjct:    23 IYAPFRSIGHVSNAVPFDIEARGTHFLVTTSVGNTFQTYDCEKLNLLFVGKQLDKEITCL 82

Query:    63 ASYRDYTFAAYGNHIAVVKRAHQVATWS----RHSAKVNLLLLFGEHILSIDIDGNMFIW 118
              S++D+   A G+ I   KR   +  W     +    V  L  FGE I++     ++++W
Sbjct:    83 KSFKDFMLVAAGSKIFAYKRGKII--WDIDVEQEHGTVTHLDAFGEWIIACTSSRHVYVW 140

Query:   119 AFKGIEENLAPVGHVKL--DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
               K   +   P  H     +     T ++HP TYLNK+++G  +G+LQ+WN+   K+++E
Sbjct:   141 --KHASKYSVPELHTTFLPNTNADITSLLHPSTYLNKILLGFSDGALQIWNLRVSKRVHE 198

Query:   177 FKGW-GXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD 235
             F+ + G         P LDV+AVG   G+I + N++    L+ F     G V + +F +D
Sbjct:   199 FQEFFGDGITSLTQAPVLDVLAVGTISGRIVIFNLKNGSILMEFKQD--GQVLSCSFRTD 256

Query:   236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
             G P+LAS    G +S W+L KRR+Q+V   AH  ++  + F   +P+L++A  DNS+K W
Sbjct:   257 GTPILASSNPIGDLSFWDLSKRRIQNVTYNAHFGSLPKIQFLNGQPILVTAGPDNSLKEW 316

Query:   296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQ 354
             IFD+ DG PR+LR R+GH  PP  ++FY    H L SA  DR+ R  S+ QD QS ELSQ
Sbjct:   317 IFDSMDGAPRILRSRNGHYEPPSFVKFYGKSVHFLISAATDRSLRAVSLYQDSQSTELSQ 376

Query:   355 RHVAKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414
               V  +A+             + A   +  RE+ W NV+T H + + A  W  ++  LG+
Sbjct:   377 GSVISKAKKLNVRPEELKLPEITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSKTLGQ 436

Query:   415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 474
             H+L P  +  T+V++  +S CGNF ++G++ G ++ +N+QSGI R S+   S  S     
Sbjct:   437 HVL-PTSDG-TSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRKSF-GQSSLSGKP-- 491

Query:   475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA 534
               V  V  D+ N ++++A   G +K WDF   +L    +VG S+   +Y   + L+A   
Sbjct:   492 --VTAVMLDNVNRILVTASLDGILKFWDFNKGNLIDSLDVGSSITHAIYQHSSDLVAVAC 549

Query:   535 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA 594
             DD  IR+ DV   ++VR+  GH++R+T F FS+ G+WL+++ +DG++R WD+     ID+
Sbjct:   550 DDFGIRIVDVQTRKIVRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPTGHLIDS 609

Query:   595 IHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASG-KEIVSVKMP 653
             I      T+L+ +P  D LAT HVDQ G+ LW N  MF    ++ + A    ++V V  P
Sbjct:   610 ISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLSMFK---HVSTKALRLDDVVEVSAP 666

Query:   654 SVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDI 713
             SVS  +G     ++  +V  ++   ++     T  Q  P+L TLS LP++QWQ+LINL+ 
Sbjct:   667 SVSGEKGISVVEAAL-NVE-SNAEDEEDISYRTMDQLDPNLQTLSKLPRTQWQTLINLEA 724

Query:   714 IKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQ 773
             IKARN           APFFLPS+   S   + K   +T+    +     K    +  ++
Sbjct:   725 IKARNAPKEVPKVPEKAPFFLPSLKDQSEATVPKQPIATEISKPTAVASIK----VSGTE 780

Query:   774 FIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRML 809
             F  LLH      +  AF +Y+KSL P+ +D+E+R L
Sbjct:   781 FSTLLHG----NDDDAFFEYLKSLGPAKIDLEIRSL 812

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=NAS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0005819 "spindle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0032040 "small-subunit processome" evidence=IEA

GO:0032153 "cell division site" evidence=IDA

GO:0044732 "mitotic spindle pole body" evidence=IDA

UNIPROTKB|G3X6I6 WDR36 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1351 (480.6 bits), Expect = 5.1e-138, P = 5.1e-138
 Identities = 301/820 (36%), Positives = 455/820 (55%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  +S +P +V+   L    +VT  VGK+FH Y+  KL+LV V   LP+ I 
Sbjct:    65 LFAGFRALGLFSSDIPHAVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSLPQDIC 124

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  +V  T+  H A+++LL  FG+H++S+D D  + IW 
Sbjct:   125 CMAADGRLVFAAYGNVFSAFARNKEVVHTFKGHKAEIHLLQPFGDHVISVDTDSVLIIWH 184

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNK+++GS++GSLQLWN+ + K LY F 
Sbjct:   185 IYSEEEYL----QLPFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFA 240

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF-SSDGQ 237
             GW          PA+DVVAVG   G++ +HN+++DE L+ F     G +T+++F ++DG 
Sbjct:   241 GWKVGVTALQQAPAVDVVAVGLMSGQVIIHNIKFDETLMKFRQDW-GPITSISFRTADGH 299

Query:   238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
             P++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIF
Sbjct:   300 PVMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIF 359

Query:   298 DTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
             D   G+ RLLRFR GHSAP   IR+Y  NG+HILSA QD   + FS + ++ ++ L    
Sbjct:   360 DGPAGEGRLLRFRMGHSAPLTRIRYYGQNGQHILSASQDGTLQSFSTVHEKFNKSLGHGL 419

Query:   357 VAKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414
             + K+   R            PV  F   E RE DW  +V CH        W  Q   +G 
Sbjct:   420 INKKRVKRKGLQNTMSVRLPPVTEFAAEEARESDWDGIVACHQGKLSCSTWNYQRSTIGA 479

Query:   415 HILRPC--PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472
             H LRP     + T   A  I++CGNFAV+G + G ++ +N+QSGI RGS+       + A
Sbjct:   480 HFLRPAGLKTDSTTATAVDITSCGNFAVIGLSSGAVDVYNMQSGIHRGSF-----GRDQA 534

Query:   473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532
             H G V GVA D  N L I+AG  G +K W+FK + L     +  S   ++ HR +G+L  
Sbjct:   535 HKGSVRGVAVDGLNQLTITAGSEGVLKFWNFKNKVLIHSVSLDSSPNLMLLHRDSGILGL 594

Query:   533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592
               DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     I
Sbjct:   595 ALDDFSISVLDIETRKIVREFSGHQGQINDMTFSPDGRWLISASMDCSIRTWDLPSGCLI 654

Query:   593 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 652
             D+  +D +   +++SP  D LAT+HVD  GVYLW N  ++S         S + + +  +
Sbjct:   655 DSFLLDSAPLNVTMSPTGDFLATSHVDHLGVYLWSNISLYS-------VVSLRPLPTDYV 707

Query:   653 PSVSSVEG-CQ--DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLI 709
             PSV  + G CQ  D   S+  V  ++ + +  +  P  +Q    LVTLSLLP+S+W++L+
Sbjct:   708 PSVVMLPGTCQTQDVELSEETVEPSEEMIE--YDSP--EQLNEQLVTLSLLPESRWKNLL 763

Query:   710 NLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDI 769
             NLD+IK +N           APFF+P++P L          +  + ++ + +G   +   
Sbjct:   764 NLDVIKKKNKPKEPPKVPKSAPFFIPTIPGLVPRYAAPEQNNDPQQSKVVNLGILAQK-- 821

Query:   770 PVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRML 809
               S F   L        + A  + +K L PS ++ ELR L
Sbjct:   822 --SDFCLKLEEGLVNNKYEAAVNLLKELGPSGIETELRSL 859

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1NKR5 WDR36 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1347 (479.2 bits), Expect = 1.3e-137, P = 1.3e-137
 Identities = 299/821 (36%), Positives = 456/821 (55%)

Query:     3 IFEPYKAIGYITSSVPFSVQRLGT--ENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  +S VP  ++  G   E +V  +VG++ H YN  KL +V V   L + I 
Sbjct:     8 LFAGFRALGRYSSHVPHVLRYHGRPREFYVATAVGRSVHTYNVKKLGIVAVSNALLQDIT 67

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              LA+ R   FA+YGN    + R  +V  T+  H A+++LL  FG+HI+S+D+   + +W 
Sbjct:    68 CLAADRMLIFASYGNVFHAIARNKEVVHTYEGHKARIHLLQPFGDHIISVDVANVLIVWD 127

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
              +  EE L     V  D   F  + I+HP TYLNK+++GS++G LQLWNI + K LY F 
Sbjct:   128 IQSEEEYL----QVVFDKATFAVSAILHPSTYLNKILLGSEQGGLQLWNIRSNKLLYSFP 183

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GWG         PA+DV+AVG   G I +HN+++DE L+ F     G +TA++F +DG P
Sbjct:   184 GWGLGVTTLAQAPAVDVIAVGLVSGHIIIHNIKFDETLMKFQQDW-GPITAISFRTDGHP 242

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I++W+LE+++L S +R AH  A+  + F   EP+L++  ADN+I++WIFD
Sbjct:   243 VMAAGSPVGHIALWDLEEKKLMSQMRNAHSTAVAGMSFVPGEPLLITNGADNAIRVWIFD 302

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G  R+LR R GHSAPP  IR++  NG  ILSAGQD   + FS + ++ ++ L +  +
Sbjct:   303 GPGGTGRVLRSRMGHSAPPTKIRYHGQNGEQILSAGQDGTLQSFSTVHERFNKSLGRGSI 362

Query:   358 -AKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416
               K+++            P+ AF      + DW  ++ CH        W  Q   +G H 
Sbjct:   363 NKKKSKKKGLQHDTMALPPITAFASEVAHQNDWDGIIACHQGYITCTTWNYQKTSMGAHK 422

Query:   417 LRP---CPENPTAVKACT--ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471
             LRP       P  + A    I+ CGNFAV+G + G ++ +N+QSGI RG Y    E+   
Sbjct:   423 LRPEEFSKNKPIDIYATAVDITTCGNFAVIGMSTGQVDVYNMQSGIHRGRY--GREK--- 477

Query:   472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 531
             AH G + GVA D  N L I+AG  G IK W FK +DL    ++  S   I+ HR +G+L 
Sbjct:   478 AHEGSIRGVAVDGLNQLTITAGSDGLIKFWKFKAKDLVHSTDLSSSPSGILLHRDSGILG 537

Query:   532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591
                DD  I + D+   ++VRKF GH  RI D  FS DG+WL++S MD +++ WD+     
Sbjct:   538 IAFDDFSISVLDIETWKIVRKFSGHHGRINDMTFSPDGRWLITSSMDCTIKTWDLPSGCL 597

Query:   592 IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVK 651
             ID   +D +  +L++SP  D LA+AHVD  G+YLW NR ++S         S + + +  
Sbjct:   598 IDCFLLDSAAVSLTMSPTGDFLASAHVDDLGIYLWSNRSIYS-------LVSLRPLPADY 650

Query:   652 MPSVSSVEG-C--QDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSL 708
              PSV ++ G C  QD + ++ +    + +  DS   P  +Q    LVTLSLLP+S+W++L
Sbjct:   651 EPSVITLPGTCPLQDVDVAEGEDKCDEMIEYDS---P--EQLGEQLVTLSLLPESRWKNL 705

Query:   709 INLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPD 768
             ++LD+IK +N           APFF+P+VP L       P +     ++ + +G   +  
Sbjct:   706 LSLDVIKKKNKPREPPKVPTSAPFFIPTVPGLIPRYA-APEQDNDTQSKVVNIGVLAQK- 763

Query:   769 IPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRML 809
                S F   L        ++A  + +K L PS +++ELR L
Sbjct:   764 ---SDFYVHLEEALSTNEYTAPLNLLKDLGPSNIEIELRSL 801

GO:0003824 "catalytic activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

UNIPROTKB|F1RLI4 WDR36 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1332 (473.9 bits), Expect = 5.2e-136, P = 5.2e-136
 Identities = 301/845 (35%), Positives = 460/845 (54%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  ++ +P  V+   L    FVT  VGK+ H Y+  KL+LV V   LP+ I 
Sbjct:    69 LFAGFRALGLFSNDIPHVVRFSALKRRFFVTTCVGKSLHTYDVQKLSLVAVSNSLPQDIC 128

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  +V  T+  H A+++LL  FG+H++S+D D  + IW 
Sbjct:   129 CMAADGRLVFAAYGNVFSAFARNKEVVHTFKGHKAEIHLLQPFGDHVISVDTDSVLIIWH 188

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNK+++GS++GSLQLWN+ + K LY F 
Sbjct:   189 IYSEEEYL----QLSFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFA 244

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GW          PA+DVVAVG   G++ +HN+++DE L+ F     G +T+++F +DG P
Sbjct:   245 GWKTGVTALQQAPAVDVVAVGLMSGQVIIHNIKFDETLMKFRQDW-GPITSISFRTDGHP 303

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIFD
Sbjct:   304 VMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIFD 363

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS I ++ ++ L    +
Sbjct:   364 GPTGEGRLLRFRMGHSAPLTKIRYYGQNGQQILSASQDGTLQSFSTIHEKFNKSLGHGLI 423

Query:   358 AKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415
              K+   R            P+  F   E RE DW  ++ CH        W  Q   +G +
Sbjct:   424 NKKRVKRKGLQNAMTVRLPPITEFAAEEARESDWDGIIACHQGKLSCSTWNYQRSTIGAY 483

Query:   416 ILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L+P    ++     A  I++CGNFAV+G + G I+ +N+QSGI RGS+       + AH
Sbjct:   484 FLKPKELKKDDITATAVDITSCGNFAVIGLSSGTIDVYNMQSGIHRGSF-----GKDQAH 538

Query:   474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR-VNGLLAT 532
              G + GVA D  N L ISAG  G +K W+FK + L     +  S   ++ HR  +G+L  
Sbjct:   539 KGSIRGVAVDGLNQLTISAGSEGLLKFWNFKNKILIHSVSLDSSPNMMLLHRDSSGILGL 598

Query:   533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592
               DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     I
Sbjct:   599 ALDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISASMDCSIRTWDLPSGCLI 658

Query:   593 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 652
             D+  +D +   +++SP  D LAT+HVD  G+YLW N  ++S         S + + +  +
Sbjct:   659 DSFLLDSAPLNVTMSPTGDFLATSHVDHLGIYLWSNISLYS-------VVSLRPLPTDYV 711

Query:   653 PSVSSVEG-CQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPD-LVTLSLLPKSQWQSLIN 710
             PSV  + G CQ ++    +   T+  P D        +Q+ + LVTLSLLP+S+W++L+N
Sbjct:   712 PSVVMLPGTCQTQDIELSE-ETTE--PSDEMIAYDSPEQLNEQLVTLSLLPESRWKNLLN 768

Query:   711 LDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIP 770
             LD+IK +N           APFF+P+VP L          +  + ++ + +G   +    
Sbjct:   769 LDVIKKKNKPKEPPKVPKSAPFFIPTVPGLVPRYATPEQNNDPQQSKVVNLGILAQK--- 825

Query:   771 VSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLS-I 829
              S F   L        + A    +K L PS ++ ELR L     D    ++    +L  I
Sbjct:   826 -SDFCLKLEEGLVNNKYEAALSLLKELGPSGIETELRSLS---PDCGGSIEVMKSFLKMI 881

Query:   830 ELLLD 834
             E++LD
Sbjct:   882 EMMLD 886

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1PNT8 WDR36 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1320 (469.7 bits), Expect = 9.8e-135, P = 9.8e-135
 Identities = 293/819 (35%), Positives = 453/819 (55%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  ++ V   ++   L    FVT    K+FH Y+  KL+LV V   LP+ I 
Sbjct:     9 LFAGFRALGLFSTDVAHVLRFSALKPRFFVTTCGAKSFHTYDVQKLSLVAVSNSLPQDIC 68

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  +V  T+  H A++ LL  FG+H++S+D D  + IW 
Sbjct:    69 CMAADGRLVFAAYGNVFSAFARNKEVVHTYKGHKAEIRLLQPFGDHVISVDTDSVLIIWH 128

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNK+++GS++G+LQLWNI + K LY F+
Sbjct:   129 IYSEEEYL----QLTFDKSVFKISAILHPSTYLNKILLGSEQGTLQLWNIKSNKLLYTFQ 184

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GW          PA+DVVAVG + G++ +HN+++DE L+ F     G +T+++F +DG P
Sbjct:   185 GWKFGVTALQQAPAVDVVAVGLTSGQVIIHNIKFDETLMKFRQDW-GPITSISFRTDGHP 243

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIFD
Sbjct:   244 IMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIFD 303

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS I ++ ++ L    +
Sbjct:   304 GPTGEGRLLRFRMGHSAPLTKIRYYGQNGQQILSASQDGTLQSFSTIHEKFNKSLGHGLI 363

Query:   358 AKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415
              K+   R            P+  F   E RE DW +++ CH        W  Q   +G +
Sbjct:   364 NKKKVKRKGLQNAMSVRLPPITKFAAEEARESDWDSIIACHQGKLSCSTWNYQRSTIGAY 423

Query:   416 ILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L+P    ++     A  I++CGNFAV+G + G ++ +N+QSGI RGS+ +     + AH
Sbjct:   424 FLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHRGSFGE-----DQAH 478

Query:   474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV 533
              G V GVA D  N L+I+AG  G +K W+FK + L     +  S   ++ HR +G+L   
Sbjct:   479 KGSVRGVAVDGLNQLIITAGSEGLLKFWNFKNKILIHSMSLSSSPNMMLLHRDSGILGLA 538

Query:   534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593
              DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     ID
Sbjct:   539 LDDFSICVLDIETRKIVREFSGHQGQINDLAFSPDGRWLISASMDCSVRTWDLPSGCLID 598

Query:   594 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMP 653
             +  VD +   +++SP  D LAT+HVD  G+YLW N  ++S         S + + +  +P
Sbjct:   599 SFLVDSAPLNVTMSPTGDFLATSHVDHLGIYLWSNISLYS-------VVSLRPLPTDYVP 651

Query:   654 SVSSVEG-CQDENS--SQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLIN 710
              V  + G CQ+E+   S+  +  +D + +  +  P  +Q    LVTLSLLP+S+W++L+N
Sbjct:   652 LVVMLPGTCQNEDVEFSEETIEPSDEMIE--YDSP--EQLNEQLVTLSLLPESRWKNLLN 707

Query:   711 LDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIP 770
             LD+IK +N           APFF+P+VP L          +    ++ + +G   +    
Sbjct:   708 LDVIKKKNKPKEPPKVPKSAPFFIPTVPGLVPRYAVPEQNNDPHQSKVVNLGVLAQK--- 764

Query:   771 VSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRML 809
              S F   L        + A  + +K L PS ++ ELR L
Sbjct:   765 -SDFCLKLEEGLVNNKYEAALNLLKELGPSGIETELRSL 802

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|Q8NI36 WDR36 "WD repeat-containing protein 36" [Homo sapiens (taxid:9606)]

 Score = 1312 (466.9 bits), Expect = 6.9e-134, P = 6.9e-134
 Identities = 287/819 (35%), Positives = 448/819 (54%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  ++ +P  V+   L    +VT  VGK+FH Y+  KL+LV V   +P+ I 
Sbjct:    69 LFAGFRALGLFSNDIPHVVRFSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSVPQDIC 128

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  ++  T+  H A+++ L  FG+HI+S+D DG + IW 
Sbjct:   129 CMAADGRLVFAAYGNVFSAFARNKEIVHTFKGHKAEIHFLQPFGDHIISVDTDGILIIWH 188

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNK+++GS++GSLQLWN+ + K LY F 
Sbjct:   189 IYSEEEYL----QLTFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFP 244

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GW          PA+DVVA+G   G++ +HN++++E L+ F     G +T+++F +DG P
Sbjct:   245 GWKVGVTALQQAPAVDVVAIGLMSGQVIIHNIKFNETLMKFRQDW-GPITSISFRTDGHP 303

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIFD
Sbjct:   304 VMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAIAGLTFLHREPLLVTNGADNALRIWIFD 363

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G+ RLLRFR GHSAP   IR+Y  NG+ ILSA QD   + FS + ++ ++ L    +
Sbjct:   364 GPTGEGRLLRFRMGHSAPLTNIRYYGQNGQQILSASQDGTLQSFSTVHEKFNKSLGHGLI 423

Query:   358 AKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415
              K+   R            P+  F   E RE DW  ++ CH        W  Q   +G +
Sbjct:   424 NKKRVKRKGLQNTMSVRLPPITKFAAEEARESDWDGIIACHQGKLSCSTWNYQKSTIGAY 483

Query:   416 ILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L+P    ++     A  I++CGNFAV+G + G ++ +N+QSGI RGS+       + AH
Sbjct:   484 FLKPKELKKDDITATAVDITSCGNFAVIGLSSGTVDVYNMQSGIHRGSF-----GKDQAH 538

Query:   474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV 533
              G V GVA D  N L ++ G  G +K W+FK + L     +  S   ++ HR +G+L   
Sbjct:   539 KGSVRGVAVDGLNQLTVTTGSEGLLKFWNFKNKILIHSVSLSSSPNIMLLHRDSGILGLA 598

Query:   534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593
              DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     ID
Sbjct:   599 LDDFSISVLDIETRKIVREFSGHQGQINDMAFSPDGRWLISAAMDCSIRTWDLPSGCLID 658

Query:   594 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMP 653
                +D +   +S+SP  D LAT+HVD  G+YLW N  ++S         S + + +  +P
Sbjct:   659 CFLLDSAPLNVSMSPTGDFLATSHVDHLGIYLWSNISLYS-------VVSLRPLPADYVP 711

Query:   654 SVSSVEG-CQ--DENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLIN 710
             S+  + G CQ  D   S+  V  +D + +  +  P  +Q    LVTLSLLP+S+W++L+N
Sbjct:   712 SIVMLPGTCQTQDVEVSEETVEPSDELIE--YDSP--EQLNEQLVTLSLLPESRWKNLLN 767

Query:   711 LDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIP 770
             LD+IK +N           APFF+P++P L          +  + ++ + +G   +    
Sbjct:   768 LDVIKKKNKPKEPPKVPKSAPFFIPTIPGLVPRYAAPEQNNDPQQSKVVNLGVLAQK--- 824

Query:   771 VSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRML 809
              S F   L        +    + +K   PS ++ ELR L
Sbjct:   825 -SDFCLKLEEGLVNNKYDTALNLLKESGPSGIETELRSL 862

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

RGD|1586463 Wdr36 "WD repeat domain 36" [Rattus norvegicus (taxid:10116)]

 Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
 Identities = 297/845 (35%), Positives = 460/845 (54%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             +F  ++A+G  ++ +P  V+   L    +VT  VGK+FH Y+  KL+LV V   +P+ I 
Sbjct:    15 LFAGFRALGLFSNDIPHVVRYNALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSVPQDIC 74

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
              +A+     FAAYGN  +   R  ++  T+  H A+++LL  FG+H++S+D D  + IW 
Sbjct:    75 CMAADGRLVFAAYGNVFSAFARNKEIVHTFKGHKAEIHLLQPFGDHVISVDTDSVLIIWH 134

Query:   120 FKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178
                 EE L     +  D   F  + I+HP TYLNKV++GS++GSLQLWNI + K LY F 
Sbjct:   135 IYSEEEYL----QLTFDKSVFKISTILHPSTYLNKVLLGSEQGSLQLWNIKSNKLLYTFP 190

Query:   179 GWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238
             GW          PA+DVVA+G   G++ +HN+++DE L+ F H   G +T+++F +DG P
Sbjct:   191 GWKVGVTALQQAPAVDVVAIGLVSGQVVIHNIKFDETLMKF-HQDWGPITSISFRTDGHP 249

Query:   239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
             ++A+G+  G I +W+LE ++L + +R AH  AI  L F   EP+L++  ADN++++WIFD
Sbjct:   250 IMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAISGLTFLHREPLLVTNGADNALRIWIFD 309

Query:   299 TTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
                G+ RLLR R GHSA    IR+Y  NG+ ILSA QD   + FS + ++ ++ L    V
Sbjct:   310 GPTGEGRLLRLRMGHSASLTKIRYYGQNGQQILSASQDGTLQSFSTVHEKFNKSLGHGLV 369

Query:   358 AKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415
              K+   R            P+  F   E R+ DW  V+ CH        W  Q   +G +
Sbjct:   370 NKKIVKRKGLQNTMSVRLPPITQFAAEEARQSDWDGVIACHQGKLSCSTWNYQRSTIGAY 429

Query:   416 ILRP--CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L+P     N     A  I++CGNFA++G + G ++ +N+QSGI RGS+ D  E+   AH
Sbjct:   430 FLKPKNVKANSATATAVDITSCGNFAIIGLSSGAVDVYNMQSGIHRGSFGD--EK---AH 484

Query:   474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV 533
              G V GVA D  N L I+AG    +K W+FK + L     +      ++ HR +G+L   
Sbjct:   485 AGSVRGVAVDGLNQLAITAGSERLLKFWNFKSKVLVHSLSLDSPPNVMLLHRDSGILGLA 544

Query:   534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593
              DD  I + D+   ++VR+F GH  +I D  FS DG+WL+S+ MD S+R WD+     ID
Sbjct:   545 LDDFSITVLDIETRKIVREFSGHQGQINDMTFSPDGRWLISAAMDCSVRTWDLPSGCLID 604

Query:   594 AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMP 653
                +D +   +++SP  D LAT+HVD  G+YLW N  ++S         S + +    +P
Sbjct:   605 CFLLDSAPLNVTMSPTGDFLATSHVDHLGIYLWSNISLYS-------VVSLRPLPPDYVP 657

Query:   654 SVSSVEG-CQDEN--SSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLIN 710
             SV  + G CQ +   + +  +  +D + +  +  P  +Q    LVTLSLLP+S+W++L+N
Sbjct:   658 SVLMLPGTCQTQGLEALEEQIEPSDEMIE--YESP--EQLNEQLVTLSLLPESRWKNLLN 713

Query:   711 LDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIP 770
             LD+IK +N           APFF+P+VP L          S  + ++ + +G   +    
Sbjct:   714 LDVIKKKNKPKEPPKVPQSAPFFIPTVPGLVPRFAVPEPTSDPQQSKVVNLGILAQK--- 770

Query:   771 VSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLS-I 829
              S F   L    +   +    + +K L PS ++ ELR L     +D   ++    +LS I
Sbjct:   771 -SNFYLKLEEGLQNNQYEGALNLLKELGPSGIETELRNLS---PEDGGSIEAMRSFLSMI 826

Query:   830 ELLLD 834
              ++LD
Sbjct:   827 GVMLD 831

GO:0001895 "retina homeostasis" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0030516 "regulation of axon extension" evidence=ISO

GO:0032040 "small-subunit processome" evidence=IEA

ZFIN|ZDB-GENE-030131-464 wdr36 "WD repeat domain 36" [Danio rerio (taxid:7955)]

 Score = 1288 (458.5 bits), Expect = 2.4e-131, P = 2.4e-131
 Identities = 288/817 (35%), Positives = 444/817 (54%)

Query:     3 IFEPYKAIGYITSSVPFSVQ--RLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIR 60
             IF  ++A+G  ++ +   V+  +   E +V  +VG+ FH YN  KL +V V   LP+ I 
Sbjct:    21 IFSGFRALGLYSNHLAHVVRFHKKHREFYVVTAVGQCFHTYNVKKLGIVAVSNALPEDIS 80

Query:    61 ALASYRDYTFAAYGNHIAVVKRAHQVA-TWSRHSAKVNLLLLFGEHILSIDIDGNMFIWA 119
             ++ +     +AAYG  I+   R+ +V  T++ H A V+LLL FG H++S+D D  + IW 
Sbjct:    81 SVTADCMLVYAAYGKLISAFARSREVVHTYTGHQADVHLLLPFGNHLISVDKDNVVIIWD 140

Query:   120 FKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG 179
              +  E+    + + K    F  + +MHP TYLNK++ GS +GSLQLWNI + K L+ F G
Sbjct:   141 VES-EDTYLQISYDKAS--FEVSALMHPSTYLNKILFGSSQGSLQLWNIKSNKLLFTFSG 197

Query:   180 WGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL 239
             W          PA+DVV VG + G+I +HN+++DE L+ F     G +TAL+F +DG P+
Sbjct:   198 WSAAVTVLQQTPAVDVVGVGLASGQIIIHNIKFDETLMKFQQDW-GPITALSFRTDGHPI 256

Query:   240 LASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299
             +ASG+  G I +W+LE+++L S +R+AH  AI  L F  NEP+L++  ADN+I++WIFD 
Sbjct:   257 MASGSPIGHIGLWDLEEKKLVSQMRDAHTTAIAGLTFLQNEPLLITNGADNAIRVWIFDV 316

Query:   300 TDGDPRLLRFRSGHSAPPLCIRFY-ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358
               GD RLLR R GHSAPP  IR Y  +G +ILSAGQD   + FS + ++ ++ L    + 
Sbjct:   317 AGGDGRLLRQRMGHSAPPTKIRHYDQSGLNILSAGQDGTLQSFSTVHERFNKSLGHGTLN 376

Query:   359 K-RARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417
             K +A+             +  F     R+ DW  ++ CH        W  Q   +G H L
Sbjct:   377 KAKAKKKGVKYDTAKLPSITTFASETARQSDWDGIIACHRGFLMTTSWNYQKGSMGAHKL 436

Query:   418 RPCPENPTA-----VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472
              P   N          A  IS+CGNFAV+  + G I+ +N+QSG+ RG Y +     + A
Sbjct:   437 EPERFNRNRSLNVHATAVDISSCGNFAVIALSSGHIDVYNMQSGLHRGHYGE-----DKA 491

Query:   473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532
             H G V GVA D+ N L  S G    +K+W FK ++      +  +    + HR +G+LA 
Sbjct:   492 HEGPVRGVAVDALNQLTFSVGADHLLKIWKFKSKEHLHTHRLPAAPASSLLHRDSGMLAI 551

Query:   533 VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592
               D   I + DV   R+VRKF GH  +I D  FS DG+WL+++ MD ++R WD+     +
Sbjct:   552 ALDVFAIHILDVETRRIVRKFSGHRGQINDMTFSPDGRWLITASMDCTIRTWDLPSGSLV 611

Query:   593 DAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKM 652
             D   V+ +  ++SLSP  + LA++HVD  GVYLW N  + S  S +    +  E   + +
Sbjct:   612 DCFLVEAAAVSVSLSPTGNFLASSHVDGLGVYLWSNNTLCSLVS-LRPLPADYEPTVIML 670

Query:   653 PSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLD 712
             P +     C  +++ + +V  +D      +  P   Q    LVTLSLLP S+W++L++LD
Sbjct:   671 PGI-----CPSKDTEEEEVLDSDSSEMAEYISPA--QLDEHLVTLSLLPDSRWKNLLHLD 723

Query:   713 IIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVS 772
             IIK +N           APFF+P++P L  +    P+  ++  ++ + +G   +     S
Sbjct:   724 IIKKKNKPKEPPKVPKAAPFFIPTIPGLVPQFSL-PNTPSEAQSKVVNLGVLAQK----S 778

Query:   773 QFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRML 809
              F   L +  E  ++      ++ L PS ++ ELR L
Sbjct:   779 NFYIELENAIESNSYEEPVKLLRELGPSAIETELRAL 815

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

FB|FBgn0038146 CG9799 [Drosophila melanogaster (taxid:7227)]

 Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
 Identities = 294/925 (31%), Positives = 472/925 (51%)

Query:     3 IFEPYKAIGYITSSVPFS---VQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKI 59
             IF   +A+GY+++ VP     VQR      +T  +G++F +Y      L+ V    P +I
Sbjct:    25 IFRRNRALGYVSNQVPAVTRYVQRRRDTLLITC-IGRSFQVYTANHFRLLHVSGLHPDEI 83

Query:    60 RALASYRDYTFAAYGNHIAVVKRA--HQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFI 117
              ALA+ R +T+ A  N      RA  H    +  H   V+LLL FG  +++ID    + +
Sbjct:    84 TALATDRLHTYTA-SNKCIYAWRAGKHIRHVYRGHQKDVHLLLPFGSSLIAIDRQNVLKV 142

Query:   118 WAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF 177
             W     E+    V      ++F  T + HP TY+NK+++GSQ+G L++ NI     +   
Sbjct:   143 WNIS-TEDVYLEVPF--RSEEFQITAVTHPPTYINKIVLGSQQGQLKILNIKKNSVVCTL 199

Query:   178 KGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237
                          PALDVVAVG  DG I + N+++DE L++F     G VT L+F +DG 
Sbjct:   200 SHHDSRITCIEPSPALDVVAVGHGDGTIILLNLKFDEVLMSFQQDW-GQVTNLSFRTDGP 258

Query:   238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
             P+L S  S+G ++ WNLE+R+L   + +AH+ ++ +     +EPV+ + S DNS++M++F
Sbjct:   259 PILVSACSNGYMAFWNLEERKLAGQL-QAHEESVTTAICLPSEPVVFTTSPDNSMRMFVF 317

Query:   298 DTTDGDPRLLRFRSGHSAPPLCIRFY-ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
             D  DG  R LR R GH+ PP CIR++ ++G  ILS+G+D   R+FS I +  ++ + +  
Sbjct:   318 DMPDGGARQLRIREGHTKPPFCIRYHGSSGVSILSSGEDSTMRVFSTISESLNKSMGRAT 377

Query:   357 VAKRA--RXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414
                +A  +            P++ F     RE++W N+   H    QA  W      +GE
Sbjct:   378 YNPKATKKKNRFEHDKFGMPPILEFTSDTAREKEWDNIAAIHAGVIQATTWSFGKNRMGE 437

Query:   415 HILRPCP---ENPTAVK---ACTI-SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE 467
             H L P      N T  +    C + + CGNF ++G + G IERFN+QSG+ R +Y     
Sbjct:   438 HRLVPKQFQNSNRTNFQNETTCIVLTHCGNFVIIGYSSGDIERFNIQSGLHRATY----- 492

Query:   468 RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS----RWEVGCSLVKIVY 523
               + AH   V G+A D+ N  +IS    G +K W FKG+  K     R   G +L+++  
Sbjct:   493 -GSPAHKMAVRGLASDNLNQTVISGCSEGLLKFWSFKGKVDKPLATLRLADGIALIRL-- 549

Query:   524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583
             HR + +LA   +   I + D+    +VRKF GHT ++ D  FS D +WL+++ MD ++++
Sbjct:   550 HRESSMLAIGLETFKIFVVDMHTRVIVRKFVGHTAKLNDLTFSPDSRWLITAAMDSTIKV 609

Query:   584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDS--NIDSY 641
             WD+  +  +D   V+    +LS+SPN D LATAHV   G+YLW N+ +F+  S  +ID  
Sbjct:   610 WDIPSSYMVDHFRVEAPCVSLSMSPNGDFLATAHVGLLGIYLWANKTLFNQISLRSIDPL 669

Query:   642 ASGKEI-VSVKMPSVSSVE-GCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSL 699
                  + +   +     +E G ++    + D  +   +    +  PT  Q   +L+TLS 
Sbjct:   670 ELAPYVGLPTNVCDAMELEDGMKELEIDEEDESKLGELVDTKYETPT--QLSEELITLSG 727

Query:   700 LPKSQWQSLINLDIIKARNXXXXXXXXXXXAPFFLPSVPSLSGEILFKPSESTKEDTESL 759
             L  S+WQ+L++L++IK RN           APFFLP+V  L  E+ F      KE+ ES 
Sbjct:   728 LAASRWQNLLDLELIKQRNKPKAPPKAPKQAPFFLPTVSGL--ELRFDVENGQKEEDES- 784

Query:   760 KVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQE 819
             ++  K      ++ F QLL   A+  +F++   ++  L PS +D E++ L       H E
Sbjct:   785 RI-RKASTLNNLTAFGQLLEETADSLDFASAVAHLTQLGPSMVDFEIKSL-------HPE 836

Query:   820 LDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLE 879
                    L++   L  +        NFE  Q+ + +FL+ HG  +     L  + R + +
Sbjct:   837 AGGT--LLAMLQFLKLVKFMFGTNLNFELAQSYLSVFLRSHGLGLTEFPDLVKELRTVSQ 894

Query:   880 VQSAVWQKIDKMFQSARCVVSFLSN 904
             VQ   WQ++++       VV+ L N
Sbjct:   895 VQQEAWQRVEEKLIYGTGVVAALRN 919

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8NI36	WDR36_HUMAN	No assigned EC number	0.3438	0.9603	0.9158	yes	no
Q06078	UTP21_YEAST	No assigned EC number	0.3065	0.9283	0.8966	yes	no
O14053	YC47_SCHPO	No assigned EC number	0.3576	0.9261	0.9312	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021349001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (905 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)				•	•		•	•	0.918
	GSVIVG00000597001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (926 aa)				•	•		•	•	0.904
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•	•		•		0.893
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)				•	•		•		0.892
	GSVIVG00000661001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (701 aa)				•	•		•		0.877
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)				•	•		•	•	0.873
	GSVIVG00018070001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)				•	•		•		0.853
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)				•	•		•		0.841
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•	•		•		0.836
	GSVIVG00013990001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (900 aa)				•	•		•	•	0.831

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	907
pfam04192	233	pfam04192, Utp21, Utp21 specific WD40 associated p	1e-55
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-22
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-15
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-09
smart00320	40	smart00320, WD40, WD40 repeats	6e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-08
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003
smart00320	40	smart00320, WD40, WD40 repeats	0.003

>gnl|CDD|217955 pfam04192, Utp21, Utp21 specific WD40 associated putative domain

 Score =  191 bits (487), Expect = 1e-55
 Identities = 82/220 (37%), Positives = 122/220 (55%), Gaps = 15/220 (6%)

Query: 690 QI-PDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKP 748
           Q+  +LVTLSLLP+S+WQ+L++LD+IK RNKP E PKKPEKAPFFLP+V  L        
Sbjct: 24  QLSEELVTLSLLPRSRWQTLLHLDVIKQRNKPKEAPKKPEKAPFFLPTVAGLDDRFGSAA 83

Query: 749 SESTKEDTESLKV-GNKTKPDIPV---SQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDM 804
               K DT+S      K K    +   S F +LL   AE  +++ F +Y+KSLSPS +D+
Sbjct: 84  ESEDKGDTDSKASRLAKLKRSGSLGFESPFTKLLREGAESGDYTEFLEYLKSLSPSAIDL 143

Query: 805 ELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETV 864
           E+R L        +EL            +  L   +  + +FE +QA + +FLK+HG+ +
Sbjct: 144 EIRSL-NPSFGPLEEL---------LSFIKALTQGLKSKRDFELVQAYMSVFLKLHGDVI 193

Query: 865 RCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSN 904
             +++L +      E Q   W+++D +      VVSFL +
Sbjct: 194 VQNSELVEALEAWSEAQEKEWERLDDLVGYCSGVVSFLRS 233

Utp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA. Length = 233

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  120 bits (302), Expect = 5e-30
 Identities = 76/320 (23%), Positives = 128/320 (40%), Gaps = 39/320 (12%)

Query: 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326
           H   +  + F  +  +L + S D +IK+W  D   G+  LLR   GH+ P   +   A+G
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVW--DLETGE--LLRTLKGHTGPVRDVAASADG 63

Query: 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386
            ++ S   D+  RL+ +   +  R L+  H                   V     A   +
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTG-H----------------TSYV--SSVAFSPD 104

Query: 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446
                + +   D     VW ++        L     +   V +   S  G F    +  G
Sbjct: 105 GRI--LSSSSRDK-TIKVWDVETGKC----LTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506
            I+ ++L++G    +           H GEV  VA       ++S+   G IK+WD    
Sbjct: 158 TIKLWDLRTGKCVATL--------TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209

Query: 507 D-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF 565
             L +       +  + +     LLA+ ++D  IR++D+     V+   GHT+ +T   +
Sbjct: 210 KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW 269

Query: 566 SEDGKWLLSSGMDGSLRIWD 585
           S DGK L S   DG++RIWD
Sbjct: 270 SPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  118 bits (299), Expect = 2e-29
 Identities = 63/272 (23%), Positives = 116/272 (42%), Gaps = 19/272 (6%)

Query: 86  VATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC 143
             T   H+  V  +     G+ + +   DG + +W  +  E      GH           
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-----TGPVRD 56

Query: 144 IM-HPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD 202
           +    D     +  GS + +++LW++ T + +    G  S +SS   SP   +++    D
Sbjct: 57  VAASADG--TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD 114

Query: 203 GKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261
             I V +V   + L T   H+    V ++AFS DG   +AS +  G I +W+L   +  +
Sbjct: 115 KTIKVWDVETGKCLTTLRGHT--DWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVA 171

Query: 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 321
            +   H   + S+ F  +   L+S+S+D +IK+W  D + G  + L    GH      + 
Sbjct: 172 TL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW--DLSTG--KCLGTLRGHENGVNSVA 226

Query: 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELS 353
           F  +G  + S  +D   R++ +   +  + LS
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  114 bits (285), Expect = 1e-26
 Identities = 94/411 (22%), Positives = 172/411 (41%), Gaps = 41/411 (9%)

Query: 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV-TFTHSMRGAVTALAFSSDGQPLL 240
            SI+S   SP  +++  G SDG I + ++   E+L+ +       +V+ LA SS     +
Sbjct: 66  DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 241 ASGASS--GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIF 297
              +SS  G + +W+L          E H  ++ SL F  +  +L S S  D +IK+W  
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Query: 298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQDQQSRELSQRH 356
            T     + L   +GH+ P   + F  +G   I S   D   RL+ +   +  R     H
Sbjct: 186 RTG----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416
                              V +F        D   + +   D     +W L++      +
Sbjct: 242 SDS---------------VVSSFS------PDGSLLASGSSDGT-IRLWDLRS---SSSL 276

Query: 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476
           LR    + ++V +   S  G     G++ G +  ++L++G         S  +   H G 
Sbjct: 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL------SSLTLKGHEGP 330

Query: 477 VVGVAC-DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD 535
           V  ++     + L+      G I++WD +        E   +++ + +     ++++ + 
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGST 390

Query: 536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
           D  +RL+D+    ++R  +GHT R+T   FS DGK L S   D ++R+WD+
Sbjct: 391 DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  102 bits (255), Expect = 9e-24
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 9/190 (4%)

Query: 106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165
           + S   D  + +W  +  +      GH      +  +    PD     V   SQ+G+++L
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGH----TDWVNSVAFSPDGTF--VASSSQDGTIKL 161

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225
           W++ T K +    G    ++S   SP  + +    SDG I + ++   + L T       
Sbjct: 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHEN 220

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 285
            V ++AFS DG  LLASG+  G I +W+L        +   H N++ SL +  +   L S
Sbjct: 221 GVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDGKRLAS 278

Query: 286 ASADNSIKMW 295
            SAD +I++W
Sbjct: 279 GSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  100 bits (251), Expect = 4e-23
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 5/157 (3%)

Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLA 531
           H G V  VA      L+ +    G IKVWD +  +L    +     +  +        LA
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591
           + + D  IRL+D+     VR   GHT  ++   FS DG+ L SS  D ++++WDV   + 
Sbjct: 68  SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127

Query: 592 IDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
           +  +  H D  + +++ SP+   +A++  D   + LW
Sbjct: 128 LTTLRGHTD-WVNSVAFSPDGTFVASSSQDGT-IKLW 162

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 23/232 (9%)

Query: 401 QAYVWRLQN----FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456
              VW L+       L  H           V+    SA G +   G++   I  ++L++G
Sbjct: 32  TIKVWDLETGELLRTLKGHTG--------PVRDVAASADGTYLASGSSDKTIRLWDLETG 83

Query: 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VG 515
               +           H   V  VA      ++ S+     IKVWD +     +      
Sbjct: 84  ECVRTLT--------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT 135

Query: 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575
             +  + +      +A+ + D  I+L+D+   + V    GHT  +    FS DG+ LLSS
Sbjct: 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195

Query: 576 GMDGSLRIWDVILARQIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLW 626
             DG++++WD+   + +  +   +  + +++ SP+  +LA+   D   + +W
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVW 246

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.8 bits (247), Expect = 6e-22
 Identities = 100/460 (21%), Positives = 177/460 (38%), Gaps = 42/460 (9%)

Query: 57  KKIRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLL--FGEHILSIDIDGN 114
             +   +S       A  +   V            H   +  +     GE +LS   DG 
Sbjct: 29  SLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGT 88

Query: 115 MFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KK 173
           + +W     E+ +  +  +  D   +   +  PD     +   S +G+++LW++ST  K 
Sbjct: 89  IKLWDLDNGEKLIKSLEGLH-DSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL 147

Query: 174 LYEFKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTALAF 232
           +   +G   S++S   SP   ++A G S DG I + ++R  + L T        V++LAF
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAF 206

Query: 233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI 292
           S DG  L+ASG+S G I +W+L   +L       H ++++S  F  +  +L S S+D +I
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTI 265

Query: 293 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL 352
           ++W          LLR  SGHS+  L + F  +G+ + S   D   RL+ +         
Sbjct: 266 RLW---DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG------ 316

Query: 353 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412
                    + L     +    PV +   +     D   +V+   D     +W L+    
Sbjct: 317 ---------KLLSSLTLKGHEGPVSSLSFSP----DGSLLVSGGSDDGTIRLWDLR---- 359

Query: 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472
                    E  + V + + S  G     G+  G +  ++L +G           R+   
Sbjct: 360 -TGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL--------RNLDG 410

Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW 512
           H   V  +        + S      I++WD K       +
Sbjct: 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 61/332 (18%), Positives = 116/332 (34%), Gaps = 67/332 (20%)

Query: 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 371
           GH+    C+ F  +G+ + +   D   +++ +   +  R L              K    
Sbjct: 7   GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL--------------KGHTG 52

Query: 372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN----FVLGEHILRPCPENPTAV 427
            ++ V A             + +   D     +W L+       L  H         + V
Sbjct: 53  PVRDVAASADGT-------YLASGSSDK-TIRLWDLETGECVRTLTGH--------TSYV 96

Query: 428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487
            +   S  G      +    I+ +++++G    +           H   V  VA     T
Sbjct: 97  SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG--------HTDWVNSVAFSPDGT 148

Query: 488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK-----------IVYHRVNGLLATVADD 536
            + S+   G IK+WD +              V            + +      L + + D
Sbjct: 149 FVASSSQDGTIKLWDLRT----------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198

Query: 537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI- 595
             I+L+D+   + +    GH + +    FS DG  L S   DG++R+WD+     +  + 
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Query: 596 -HVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
            H   S+T+L+ SP+   LA+   D   + +W
Sbjct: 259 GH-TNSVTSLAWSPDGKRLASGSAD-GTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.4 bits (194), Expect = 2e-15
 Identities = 88/426 (20%), Positives = 167/426 (39%), Gaps = 45/426 (10%)

Query: 208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH 267
            N     +      S+         SS+   LL +  S  ++S+ +L    L+      H
Sbjct: 10  ENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG-----H 64

Query: 268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF-YANG 326
           +++I S+ F  +  +L+S S+D +IK+W  D  +G+  +      H +    +     +G
Sbjct: 65  EDSITSIAFSPDGELLLSGSSDGTIKLW--DLDNGEKLIKSLEGLHDSSVSKLALSSPDG 122

Query: 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386
             IL A             D   +        K  R L+   E +     +AF       
Sbjct: 123 NSILLASSSL---------DGTVKLWDLSTPGKLIRTLEGHSESVTS---LAFSPDGK-- 168

Query: 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAG 445
                + +         +W L+    G+ +          V +   S  G   +   ++ 
Sbjct: 169 ----LLASGSSLDGTIKLWDLRT---GKPLSTLAGHTDP-VSSLAFSPDGGLLIASGSSD 220

Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK- 504
           G I  ++L +G    S L         H+  VV  +     +L+ S    G I++WD + 
Sbjct: 221 GTIRLWDLSTGKLLRSTLS-------GHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRS 272

Query: 505 -GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV--VALRMVRKFEGHTDRIT 561
               L++      S++ + +     LLA+ + D  +RL+D+    L      +GH   ++
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332

Query: 562 DFCFSEDGKWLLSSGM-DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620
              FS DG  L+S G  DG++R+WD+   + +  +    ++ ++S SP+  V+++   D 
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTD- 391

Query: 621 NGVYLW 626
             V LW
Sbjct: 392 GTVRLW 397

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
           +R  +GHT  +T   FS DG  L S   DG++R+WD
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
           ++  +GHT  +T   FS DGK+L S   DG++++WD
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.3 bits (131), Expect = 9e-08
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALSLS 607
           + R  +GHT  +T   FS DGK L +   DG++++WD+     +  +      +  ++ S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 608 PNMDVLATAHVDQNGVYLW 626
            +   LA+   D   + LW
Sbjct: 61  ADGTYLASGSSD-KTIRLW 78

Length = 289

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 43.5 bits (102), Expect = 5e-04
 Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 13/154 (8%)

Query: 148 DTYLNKVIVGSQ-EGSLQLWNIS-----TKKKLYEFKGWGSSISSCVSSPALDVVAVGCS 201
           ++Y+   +  S  EG +Q+W+++     T+ K +E + W    SS  + P L  +A G  
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS--ADPTL--LASGSD 596

Query: 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261
           DG + + ++     + T     +  +  + F S+    LA G++   +  ++L   +L  
Sbjct: 597 DGSVKLWSINQGVSIGTI--KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654

Query: 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
                H +  +S   F +   L+S+S DN++K+W
Sbjct: 655 CTMIGH-SKTVSYVRFVDSSTLVSSSTDNTLKLW 687

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMW 295
           + H   + S+ F  +  +L S S D ++++W
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMW 295
           + H   + S+ F  +   L S S D +IK+W
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	907
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
PF04192	237	Utp21: Utp21 specific WD40 associated putative dom	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
PTZ00421	493	coronin; Provisional	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
PTZ00420	568	coronin; Provisional	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG1963	792	consensus WD40 repeat protein [General function pr	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG1963	792	consensus WD40 repeat protein [General function pr	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.85
KOG1188	376	consensus WD40 repeat protein [General function pr	99.85
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
KOG1310	758	consensus WD40 repeat protein [General function pr	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.81
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.8
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.79
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.76
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.74
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
KOG4547	541	consensus WD40 repeat-containing protein [General	99.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.73
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.72
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.71
KOG4227	609	consensus WD40 repeat protein [General function pr	99.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.71
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.71
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.7
KOG2139	445	consensus WD40 repeat protein [General function pr	99.69
KOG1334	559	consensus WD40 repeat protein [General function pr	99.69
KOG1334	559	consensus WD40 repeat protein [General function pr	99.69
KOG2139	445	consensus WD40 repeat protein [General function pr	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.67
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.67
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.66
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.64
KOG2315	566	consensus Predicted translation initiation factor	99.64
COG4946	668	Uncharacterized protein related to the periplasmic	99.63
KOG2315	566	consensus Predicted translation initiation factor	99.62
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.62
PRK01742	429	tolB translocation protein TolB; Provisional	99.62
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.61
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.6
KOG2321	703	consensus WD40 repeat protein [General function pr	99.59
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.59
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.58
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.58
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.57
KOG2321	703	consensus WD40 repeat protein [General function pr	99.57
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.57
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.55
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.55
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.54
PRK03629	429	tolB translocation protein TolB; Provisional	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.52
PRK02889	427	tolB translocation protein TolB; Provisional	99.52
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.51
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.5
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.49
PRK05137	435	tolB translocation protein TolB; Provisional	99.49
PRK02889	427	tolB translocation protein TolB; Provisional	99.48
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.48
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.47
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.46
KOG2314	698	consensus Translation initiation factor 3, subunit	99.45
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.45
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.43
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.43
KOG4547	541	consensus WD40 repeat-containing protein [General	99.39
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.34
KOG2314	698	consensus Translation initiation factor 3, subunit	99.33
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.33
PRK04792	448	tolB translocation protein TolB; Provisional	99.32
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.3
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.29
PRK01029	428	tolB translocation protein TolB; Provisional	99.28
PRK04792	448	tolB translocation protein TolB; Provisional	99.27
PRK00178	430	tolB translocation protein TolB; Provisional	99.26
COG4946	668	Uncharacterized protein related to the periplasmic	99.26
PRK00178	430	tolB translocation protein TolB; Provisional	99.23
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.21
PRK01029	428	tolB translocation protein TolB; Provisional	99.2
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.19
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.18
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.15
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.15
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.13
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.09
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.08
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.08
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.03
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.0
PRK04043	419	tolB translocation protein TolB; Provisional	98.98
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.96
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.95
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.94
PF04003	110	Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A la	98.93
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.93
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.9
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.9
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.88
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.87
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.86
PRK04043	419	tolB translocation protein TolB; Provisional	98.84
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.84
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.83
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.81
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.81
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.79
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.79
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.78
PRK02888	635	nitrous-oxide reductase; Validated	98.75
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.75
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.7
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.69
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.68
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.68
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.68
PRK02888	635	nitrous-oxide reductase; Validated	98.64
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.64
KOG2695	425	consensus WD40 repeat protein [General function pr	98.63
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.62
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.59
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.59
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.58
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.49
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.49
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.49
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.49
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.45
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.44
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.42
KOG2695	425	consensus WD40 repeat protein [General function pr	98.41
KOG3621	726	consensus WD40 repeat-containing protein [General	98.4
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.39
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.38
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.37
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.35
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.33
KOG3621	726	consensus WD40 repeat-containing protein [General	98.33
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.32
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.27
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.25
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.24
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.16
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.16
COG3391	381	Uncharacterized conserved protein [Function unknow	98.16
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.13
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.13
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.11
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.1
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.06
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.03
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.03
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.96
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.96
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.95
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.94
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.93
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.89
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.89
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.88
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.87
COG3391	381	Uncharacterized conserved protein [Function unknow	97.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.85
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.72
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.63
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.63
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.63
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.61
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.61
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.57
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.52
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.49
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.45
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.42
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.3
KOG2395	644	consensus Protein involved in vacuole import and d	97.28
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.26
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.25
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.24
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.23
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.22
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.19
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	97.18
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.12
PRK13616	591	lipoprotein LpqB; Provisional	97.12
PRK13616	591	lipoprotein LpqB; Provisional	97.08
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.07
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.98
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.96
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.9
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.88
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.87
KOG2444	238	consensus WD40 repeat protein [General function pr	96.75
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.72
KOG2395	644	consensus Protein involved in vacuole import and d	96.72
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.59
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.58
COG3292	671	Predicted periplasmic ligand-binding sensor domain	96.58
PRK13684	334	Ycf48-like protein; Provisional	96.54
KOG2444	238	consensus WD40 repeat protein [General function pr	96.5
PHA02713	557	hypothetical protein; Provisional	96.45
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.44
PF09384	148	UTP15_C: UTP15 C terminal; InterPro: IPR018983 Thi	96.37
COG5276	370	Uncharacterized conserved protein [Function unknow	96.31
PHA02713	557	hypothetical protein; Provisional	96.28
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.26
COG3292	671	Predicted periplasmic ligand-binding sensor domain	96.22
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.19
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.18
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.14
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.13
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.08
PF08625	141	Utp13: Utp13 specific WD40 associated domain; Inte	96.08
COG5276	370	Uncharacterized conserved protein [Function unknow	96.07
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.0
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.92
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.74
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.68
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.67
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.63
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.55
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.49
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.44
KOG3616	1636	consensus Selective LIM binding factor [Transcript	95.43
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.33
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.28
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.26
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.22
PRK10115	686	protease 2; Provisional	95.19
PHA03098	534	kelch-like protein; Provisional	95.17
PRK13684	334	Ycf48-like protein; Provisional	95.17
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.08
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.92
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.87
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	94.87
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	94.85
PHA03098	534	kelch-like protein; Provisional	94.74
PRK10115	686	protease 2; Provisional	94.67
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.63
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.59
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.28
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.26
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.2
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.56
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.51
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.49
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.17
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.16
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.12
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.04
COG5167	776	VID27 Protein involved in vacuole import and degra	92.96
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.93
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.84
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.62
KOG2247	615	consensus WD40 repeat-containing protein [General	92.43
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.05
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.7
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.43
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.35
KOG2247	615	consensus WD40 repeat-containing protein [General	91.31
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	91.1
PHA02790	480	Kelch-like protein; Provisional	91.05
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.04
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.81
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.69
PHA02790	480	Kelch-like protein; Provisional	90.67
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.67
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.66
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.56
COG5167	776	VID27 Protein involved in vacuole import and degra	90.52
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.44
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.39
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.08
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.59
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	89.39
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.35
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	89.11
COG4590	733	ABC-type uncharacterized transport system, permeas	89.09
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.92
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	88.86
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	88.61
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.6
COG4590	733	ABC-type uncharacterized transport system, permeas	88.46
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.11
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.02
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.67
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.26
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	87.11
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	86.8
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	85.42
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	85.24
PLN02153	341	epithiospecifier protein	85.15
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	85.08
PLN02193	470	nitrile-specifier protein	85.07
COG1520	370	FOG: WD40-like repeat [Function unknown]	84.9
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	83.85
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	83.73
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	82.79
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	82.61
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	82.29
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	82.09

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=2.1e-148  Score=1163.63  Aligned_cols=880  Identities=44%  Similarity=0.755  Sum_probs=801.2

Q ss_pred             CcccccceeeEeecCCcceeEEEcCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCeEEEE
Q 002564            1 MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVV   80 (907)
Q Consensus         1 ~~~~~~~r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~I~vw   80 (907)
                      |.||+|||++|+|+|+|||.+...++..++++|+|+++++||+++++++++++.++..|+|+|-+.+.+|+|+|+.|++|
T Consensus        21 S~iFapfR~lG~vsn~VP~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g~~i~~~  100 (910)
T KOG1539|consen   21 SDIFAPFRALGYVSNGVPFRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASGNKIYAY  100 (910)
T ss_pred             cccccchhhhceecCCCceeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecCcEEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCeeEEE-EcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCcc-ccceeeEecCCCcccEEEEcCCCCCCEEEEEe
Q 002564           81 KRAHQVAT-WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN-LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS  158 (907)
Q Consensus        81 ~~~~~~~~-~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s  158 (907)
                      .+++.+.. +.+|.+.|.-+.+.|.+++++..++.+.||+..+.+.. ...+.-.+....+ ++..+||++|+|+++.|+
T Consensus       101 ~rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~-Ital~HP~TYLNKIvvGs  179 (910)
T KOG1539|consen  101 ARGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDF-ITALLHPSTYLNKIVVGS  179 (910)
T ss_pred             EccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCc-eeeEecchhheeeEEEee
Confidence            99977666 89999999999999999999999999999999985221 1112223333444 788999999999999999


Q ss_pred             cCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (907)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~  238 (907)
                      .+|.+++||+++++.+++++++...|+++..+|.-+++|+|..+|+|.++|++.++.+.+|.+. .+.|++++|..||.+
T Consensus       180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-~g~VtslSFrtDG~p  258 (910)
T KOG1539|consen  180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD-WGRVTSLSFRTDGNP  258 (910)
T ss_pred             cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc-ccceeEEEeccCCCe
Confidence            9999999999999999999999999999999999999999999999999999999999999987 799999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCe
Q 002564          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL  318 (907)
Q Consensus       239 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~  318 (907)
                      +|++|+..|.+.+||++..+.+..+..+|.+.|....|.|..+.+++++.|+++++|-++++++.+++++.+.||+.|+.
T Consensus       259 ~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~  338 (910)
T KOG1539|consen  259 LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS  338 (910)
T ss_pred             eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch
Confidence            99999999999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccch-hhhcccCceeEeeecccccccccceEEEe
Q 002564          319 CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK-EEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (907)
Q Consensus       319 ~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  396 (907)
                      +++|+. +|..+++++.|++++.+++....+.+++.+.+..+++++.+.. ....+++|+..+++...|+.+|++++++|
T Consensus       339 ~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h  418 (910)
T KOG1539|consen  339 CIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH  418 (910)
T ss_pred             heeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence            999995 8999999999999999999999999999987777777777777 78899999999999999999999999999


Q ss_pred             eCCceEEEEEeeeceecceeeecCCCC--CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcC
Q 002564          397 MDTAQAYVWRLQNFVLGEHILRPCPEN--PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN  474 (907)
Q Consensus       397 ~~~~~v~~w~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~  474 (907)
                      .++..+++|++++...|.+.+.+.+..  ...++++++++||++.++|++.|+|.+||+++|..+..|..     .++|.
T Consensus       419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-----~~ah~  493 (910)
T KOG1539|consen  419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-----SPAHK  493 (910)
T ss_pred             cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-----Ccccc
Confidence            999999999999999999999887443  36789999999999999999999999999999999999842     24899


Q ss_pred             CcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee
Q 002564          475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE  554 (907)
Q Consensus       475 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~  554 (907)
                      ++|++++.+..++.+++++.+|.+++||+++..++..+.....+.++.++....++|++.+|-.|+++|+.+.+.++.|.
T Consensus       494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~  573 (910)
T KOG1539|consen  494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW  573 (910)
T ss_pred             CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeeccccccc
Q 002564          555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSG  634 (907)
Q Consensus       555 ~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~  634 (907)
                      ||.+.|++++|||||+||++++.|++||+||++++.+++.+....+++++.|||+|++|||+|.|+++|++|.|+++|..
T Consensus       574 gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~  653 (910)
T KOG1539|consen  574 GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKS  653 (910)
T ss_pred             ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHhee
Confidence            99999999999999999999999999999999999999999999999999999999999999999989999999999999


Q ss_pred             CCCCccCCCCCcceeecCCCccCCCCccCCCCCCCCCccCCCCCCCCCCCCCccccccCceeecCCchhhhhhccchHHH
Q 002564          635 DSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDII  714 (907)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tls~~p~~~~~~l~~l~~i  714 (907)
                      ++.+ .++.++.+..+.+|+..+..++++...       ..+..++.-.|.+++|++++|+|||.+|+|||++|+|||.|
T Consensus       654 vs~r-~~~~~~~~~~v~lPst~~~~d~e~~~~-------tLE~~~e~i~y~~~eQldeeLvTlS~lp~Srwq~Ll~LelI  725 (910)
T KOG1539|consen  654 VSTR-AIPADYVPSWVMLPSTCDEDDDEDDEV-------TLESNDEDIKYSSPEQLDEELVTLSKLPRSRWQNLLNLELI  725 (910)
T ss_pred             cccc-ccCcccccceeecCcccccccchhhhh-------hhhccccccccCChhHhChhhhhhccCcHHHhhhcccHHHH
Confidence            9888 998888889999999655544322111       11111233489999999999999999999999999999999


Q ss_pred             hhhCCCCCCCCCCCCCCccccCCCCCCcccccC-CCCCCcccchhhhccCCCCCCCCccHHHHHHhhccccCChHHHHHH
Q 002564          715 KARNKPIEPPKKPEKAPFFLPSVPSLSGEILFK-PSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDY  793 (907)
Q Consensus       715 ~~r~kp~~~~~~~~~~pffl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  793 (907)
                      |+||||+||||+|++||||||+.+. ++ +.+. +..++.++++.+.+.......+.+|.|.++|+++..+++|..+++|
T Consensus       726 k~RnkPke~PK~pkkaPFFLp~~~s-~g-~v~e~~~~~~~~~~~~~~~ik~~~~L~~es~F~~~Lre~~~s~~~~~~~~~  803 (910)
T KOG1539|consen  726 KKRNKPKEPPKKPKKAPFFLPKVPS-EG-LVLETPAAEELNKEEDENKIKKLGLLELESSFTTLLREGKDSKDFLDAFAL  803 (910)
T ss_pred             HhcCCCCCCCCccccCCcccccCCc-cc-ccccCcchhhhcchhhhhhhhccccccccchHHHHHhhccccccHHHHHHH
Confidence            9999999999999999999999885 22 2222 1111112222222223334556789999999999999999999999


Q ss_pred             HHhCCCCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHhcCCCHHhHHHHHHHHHHhhccccccch---HH
Q 002564          794 IKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHT---KL  870 (907)
Q Consensus       794 l~~~~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~~~~~~---~~  870 (907)
                      |++++||+||+|||+|..          .+++++++..|+++|.++|++++||||+||||++|+|+||..|.+++   .|
T Consensus       804 L~~~~psaiD~eiRsL~d----------~~~~~~~~~~Fi~~l~~~l~~k~nFEL~qa~~slf~K~H~~~l~~~~~~~dl  873 (910)
T KOG1539|consen  804 LKNLSPSAIDFEIRSLND----------AGETIEEMVIFIKMLTQMLKTKRNFELVQAYMSLFLKSHGLVLWNHEGPEDL  873 (910)
T ss_pred             HHhcCcchheeehhhhhc----------cCcchHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhhhhhhccCCCchhH
Confidence            999999999999999962          14568999999999999999999999999999999999999998766   89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccceeeehhccccCC
Q 002564          871 QDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL  907 (907)
Q Consensus       871 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  907 (907)
                      .+.|++|.++|+++|++|++||.||+|+|+|++|+++
T Consensus       874 ~e~l~~~~~v~~e~wq~le~l~~~~mgvl~~l~nall  910 (910)
T KOG1539|consen  874 TEELQNWEEVQSEEWQRLEELFLYCMGVLAFLKNALL  910 (910)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHhhccC
Confidence            9999999999999999999999999999999999874

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.4e-59  Score=483.58  Aligned_cols=657  Identities=16%  Similarity=0.270  Sum_probs=546.4

Q ss_pred             cCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEE--cCeEEEEeCCeeE----------EEEcc
Q 002564           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY--GNHIAVVKRAHQV----------ATWSR   91 (907)
Q Consensus        24 ~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~--g~~I~vw~~~~~~----------~~~~~   91 (907)
                      +++..++++..+|-..+-+......++.. ....+|.|+.|||||+++|.  |+-+.+|..++.+          +++.|
T Consensus        65 p~g~lllavdE~g~~~lvs~~~r~Vlh~f-~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g  143 (893)
T KOG0291|consen   65 PDGTLLLAVDERGRALLVSLLSRSVLHRF-NFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLG  143 (893)
T ss_pred             CCceEEEEEcCCCcEEEEecccceeeEEE-eecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecC
Confidence            66777777777777777777666655554 46889999999999998766  5569999865542          34889


Q ss_pred             cccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecC
Q 002564           92 HSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS  169 (907)
Q Consensus        92 h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~  169 (907)
                      |...|+++.|  |.++|++++.|-++++|.++..+-..  ...+..|...+..|.|..+.  ..+++.+.||.+.+|...
T Consensus       144 ~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~--~~~l~gHkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~  219 (893)
T KOG0291|consen  144 HFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF--TYALNGHKDYVVACFFGANS--LDLYTVSKDGALFVWTCD  219 (893)
T ss_pred             CccceeEEEeccCCceEEeccccceEEEEEeccccccc--eEeccCCCcceEEEEeccCc--ceEEEEecCceEEEEEec
Confidence            9999999998  68899999999999999998876522  45566788899999999998  789999999999999765


Q ss_pred             C-----------------------CeE-----------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCce
Q 002564          170 T-----------------------KKK-----------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE  215 (907)
Q Consensus       170 ~-----------------------~~~-----------~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~  215 (907)
                      .                       ++.           .+-+......|+|.+|++..+.||+|...|...+|.+..-..
T Consensus       220 ~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l  299 (893)
T KOG0291|consen  220 LRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL  299 (893)
T ss_pred             CCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE
Confidence            1                       111           112233358899999999999999999999999999999999


Q ss_pred             EEEEeecCCCCEEEEEEecCCCCEEEEEeC-CCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEE
Q 002564          216 LVTFTHSMRGAVTALAFSSDGQPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM  294 (907)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~v  294 (907)
                      ++.+... ..+|..++|+..|. .+|.|+. -|.+-||++.+...+...+ +|...+++++++|||+++++|+.||.|++
T Consensus       300 ih~LSis-~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKv  376 (893)
T KOG0291|consen  300 IHSLSIS-DQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKV  376 (893)
T ss_pred             EEEeecc-cceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEE
Confidence            9999876 67899999999999 7777764 4899999999999888888 99999999999999999999999999999


Q ss_pred             EEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccC
Q 002564          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (907)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (907)
                      ||...+    -+..++..|+..|+.+.|+..|+.+++++.||+|+.||+.....-+.+..                    
T Consensus       377 Wn~~Sg----fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~--------------------  432 (893)
T KOG0291|consen  377 WNTQSG----FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS--------------------  432 (893)
T ss_pred             EeccCc----eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC--------------------
Confidence            987654    68889999999999999999999999999999999999987665555432                    


Q ss_pred             ceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCC-cEEEEeC
Q 002564          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNL  453 (907)
Q Consensus       375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-~i~i~d~  453 (907)
                                                                     ..+....|++..|.|..+++|+.|. .|.+|++
T Consensus       433 -----------------------------------------------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~  465 (893)
T KOG0291|consen  433 -----------------------------------------------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV  465 (893)
T ss_pred             -----------------------------------------------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEe
Confidence                                                           1235678999999999999999887 8999999


Q ss_pred             CCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCC-CceeeeeecCcceeEEEEeeCCCEEEE
Q 002564          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLAT  532 (907)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~  532 (907)
                      ++|+.+..+.        +|.++|.+++|+|.+..|++++.|.+||+||+-. .....+++....+..++|+|+|+.||+
T Consensus       466 qTGqllDiLs--------GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV  537 (893)
T KOG0291|consen  466 QTGQLLDILS--------GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV  537 (893)
T ss_pred             ecCeeeehhc--------CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE
Confidence            9999999885        9999999999999999999999999999999764 456778888899999999999999999


Q ss_pred             EeCCCeEEEEEcccceeEEEeec--------------------CCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCcee
Q 002564          533 VADDLVIRLFDVVALRMVRKFEG--------------------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  592 (907)
Q Consensus       533 ~~~dg~I~v~d~~~~~~~~~~~~--------------------h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~  592 (907)
                      ++-||.|.+||++.+..+..+.|                    .....+.+++|+||.+|++|+....|++||++++-++
T Consensus       538 aTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll  617 (893)
T KOG0291|consen  538 ATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL  617 (893)
T ss_pred             EEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence            99999999999987766544332                    2356899999999999999999999999999887665


Q ss_pred             eEeee------------------------------------------------------CC---ceEEEEECCCCceEEE
Q 002564          593 DAIHV------------------------------------------------------DV---SITALSLSPNMDVLAT  615 (907)
Q Consensus       593 ~~~~~------------------------------------------------------~~---~v~~l~~spdg~~lat  615 (907)
                      +.++.                                                      ..   .|.++.|||.|+.+|+
T Consensus       618 kkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAa  697 (893)
T KOG0291|consen  618 KKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAA  697 (893)
T ss_pred             eeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeee
Confidence            55431                                                      01   2789999999999999


Q ss_pred             EEecCCeEEEeecccc--cccCCCCccCCCCCcceeecCCCccCCCCccCCCCCCCCCccCCCCCCCCCCCCCccccccC
Q 002564          616 AHVDQNGVYLWVNRCM--FSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPD  693 (907)
Q Consensus       616 ~~~d~~~i~lW~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (907)
                      ++..|  +.||.+...  |.|..+-                                            ..++|+     
T Consensus       698 atTEG--l~IYsld~~~~FDPf~LD--------------------------------------------~~vTPe-----  726 (893)
T KOG0291|consen  698 ATTEG--LLIYSLDTTILFDPFDLD--------------------------------------------VDVTPE-----  726 (893)
T ss_pred             ecccc--eEEEecCCceEEcccccc--------------------------------------------cccCHH-----
Confidence            99987  777775322  2222110                                            000010     


Q ss_pred             ceeecCCchhhhhhccchHHHhhhCCCCCCCCCCCCCCccccCCCCCCcccccCCCCCCcccchhhhccCCCCCCCCccH
Q 002564          694 LVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQ  773 (907)
Q Consensus       694 l~tls~~p~~~~~~l~~l~~i~~r~kp~~~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  773 (907)
                                         .+++             |         +                             .+..
T Consensus       727 -------------------~v~~-------------a---------l-----------------------------~~qe  736 (893)
T KOG0291|consen  727 -------------------SVRE-------------A---------L-----------------------------REQE  736 (893)
T ss_pred             -------------------HHHH-------------H---------H-----------------------------hcch
Confidence                               0000             0         0                             1234


Q ss_pred             HHHHHhhccccCChHHHHHHHHhCCCCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHhcCCCHHhHHHHH
Q 002564          774 FIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVI  853 (907)
Q Consensus       774 ~~~~l~~~~~~~~~~~~~~~l~~~~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  853 (907)
                      |.+.|.-+++-|+|..+-+.|.+.++.-|.+=..+|.+               .++.++|++|...|...++.|+...|+
T Consensus       737 y~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp~---------------~y~erll~~l~~~l~~s~HieF~l~W~  801 (893)
T KOG0291|consen  737 YLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLPT---------------AYLERLLKALSRFLENSPHIEFYLRWL  801 (893)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCcH---------------HHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            66777777788999999999999999998887777764               899999999999999999999999999


Q ss_pred             HHHHHhhccccccch-HHHHHHHHHHHHHHHHHHHHHHhhccceeeehhcc
Q 002564          854 RLFLKIHGETVRCHT-KLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLS  903 (907)
Q Consensus       854 ~~~l~~h~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  903 (907)
                      +.+|..||..|.... .+..+|..|++.+.+..+.|-++..+|-.+++||-
T Consensus       802 ~~il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~~~Nky~L~~lv  852 (893)
T KOG0291|consen  802 RAILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLCSLNKYTLRYLV  852 (893)
T ss_pred             HHHHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            999999999998765 67789999999999999999999999999999983

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.7e-57  Score=470.68  Aligned_cols=705  Identities=19%  Similarity=0.264  Sum_probs=555.4

Q ss_pred             cCCeEEEEEEeCCeEEEEEcCcceEE-Eec-CCCCcceEEEEEecCeEEEEEcCe---EEEEe--CCeeEEEEcc-cccc
Q 002564           24 LGTENFVTVSVGKAFHIYNCAKLNLV-LVG-PQLPKKIRALASYRDYTFAAYGNH---IAVVK--RAHQVATWSR-HSAK   95 (907)
Q Consensus        24 ~~~~~~~~~~~~~~v~iwd~~~~~~~-~~~-~~~~~~I~~la~~~~~~~~a~g~~---I~vw~--~~~~~~~~~~-h~~~   95 (907)
                      ++++.|++.+ ++.|.+-|+.+++.. ... +..+..|+++++.||...+.+..+   +++|.  +++.++.++. |++|
T Consensus        29 ~nG~~L~t~~-~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~P  107 (775)
T KOG0319|consen   29 SNGQHLYTAC-GDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAP  107 (775)
T ss_pred             CCCCEEEEec-CceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCC
Confidence            5566666555 577889999998874 332 667788999999999777655333   88886  5777888887 9999


Q ss_pred             eEEEEee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe-
Q 002564           96 VNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK-  172 (907)
Q Consensus        96 V~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~-  172 (907)
                      |..++++  |..|++|+.||.++|||+..+..    ...+.++++.+.+..|+|.-....|++|..|+++++||+.+.. 
T Consensus       108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~----th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t  183 (775)
T KOG0319|consen  108 VITMAFDPTGTLLATGGADGRVKVWDIKNGYC----THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT  183 (775)
T ss_pred             eEEEEEcCCCceEEeccccceEEEEEeeCCEE----EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence            9999985  78899999999999999999998    8899999999999999999866778999999999999998655 


Q ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecC-----CCCEEEEEeCCC
Q 002564          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-----GQPLLASGASSG  247 (907)
Q Consensus       173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-----g~~~l~sg~~dg  247 (907)
                      +++.+..|.+.|++++|++|+..+++++.|..+.|||+...+...++...  ..+.++.+-++     |. ++.+.+.+|
T Consensus       184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y--e~~E~vv~l~~~~~~~~~-~~~TaG~~g  260 (775)
T KOG0319|consen  184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLY--ESLESVVRLREELGGKGE-YIITAGGSG  260 (775)
T ss_pred             HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechh--hheeeEEEechhcCCcce-EEEEecCCc
Confidence            48889999999999999999999999999999999999877777776653  56888888877     56 888999999


Q ss_pred             cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CC
Q 002564          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NG  326 (907)
Q Consensus       248 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g  326 (907)
                      .+++||.+++++...........+..+...+....++....|..+.++|.+..    ++.+.+-|..+.|..++|-. +.
T Consensus       261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l----~i~k~ivG~ndEI~Dm~~lG~e~  336 (775)
T KOG0319|consen  261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL----TIVKQIVGYNDEILDMKFLGPEE  336 (775)
T ss_pred             eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcccc----EEehhhcCCchhheeeeecCCcc
Confidence            99999999998887766333444777777777777778888999999987765    66777789999999999975 77


Q ss_pred             CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEE
Q 002564          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (907)
Q Consensus       327 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~  406 (907)
                      ++++.++..+.+|+++..+..+.  +-.++.                ..+.+++.     .....+++.+..+..+++|.
T Consensus       337 ~~laVATNs~~lr~y~~~~~~c~--ii~GH~----------------e~vlSL~~-----~~~g~llat~sKD~svilWr  393 (775)
T KOG0319|consen  337 SHLAVATNSPELRLYTLPTSYCQ--IIPGHT----------------EAVLSLDV-----WSSGDLLATGSKDKSVILWR  393 (775)
T ss_pred             ceEEEEeCCCceEEEecCCCceE--EEeCch----------------hheeeeee-----cccCcEEEEecCCceEEEEE
Confidence            89999999999999987665543  222111                11222220     11124677778889999999


Q ss_pred             eeeceecceeeecCCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccceee-eccccccccCcCCcEEEEEEcC
Q 002564          407 LQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSY-LDMSERSNYAHNGEVVGVACDS  484 (907)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~s~  484 (907)
                      +.+............+|...+.+++++..+ .++++++.|+++++|++...+..... ..........|...|++++++|
T Consensus       394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~  473 (775)
T KOG0319|consen  394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP  473 (775)
T ss_pred             ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence            976666666667778899999999997766 78999999999999999873222211 0001112358999999999999


Q ss_pred             CCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeE
Q 002564          485 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF  563 (907)
Q Consensus       485 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l  563 (907)
                      +.++++||+.|.+.++|++........+..+ ..+.++.|+|..+.+|+++.|++|+||.+.+..++++|.||+..|..+
T Consensus       474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra  553 (775)
T KOG0319|consen  474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA  553 (775)
T ss_pred             CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence            9999999999999999999999999999877 899999999999999999999999999999999999999999999999


Q ss_pred             EECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCCCceEEEEEecCCeEEEeecccccccCCCCccCC
Q 002564          564 CFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYA  642 (907)
Q Consensus       564 ~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~~~~~~~~~  642 (907)
                      .|-.+|+.|+|++.||-|++|++.++.|+..+..|.. |++++-+|.+.+++||+.|++ |.+|.-.+            
T Consensus       554 ~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~-i~~wkD~T------------  620 (775)
T KOG0319|consen  554 SFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR-IIFWKDVT------------  620 (775)
T ss_pred             eeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeE-EEEeecCc------------
Confidence            9999999999999999999999999999999988776 999999999999999999995 99997210            


Q ss_pred             CCCcceeecCCCccCCCCccCCCCCCCCCccCCCCCCCCCCCCCccccccCceeecCCchhhhhhccchHHHhhhCCCCC
Q 002564          643 SGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIE  722 (907)
Q Consensus       643 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tls~~p~~~~~~l~~l~~i~~r~kp~~  722 (907)
                       +.                  +..+      +.+..++        +            .-+=|+|-|+--  +  |-  
T Consensus       621 -e~------------------~~~e------e~~K~~e--------a------------ieq~QeL~n~l~--~--~~--  649 (775)
T KOG0319|consen  621 -EE------------------EQNE------EQEKREE--------A------------IEQEQELENLLS--Q--KR--  649 (775)
T ss_pred             -HH------------------HHHH------HHHHHHH--------H------------HHHHHHHHHHHh--h--hh--
Confidence             00                  0000      0000000        0            001111111111  0  00  


Q ss_pred             CCCCCCCCCccccCCCCCCcccccCCCCCCcccchhhhccCCCCCCCCccHHHHHHhhccccCChHHHHH----HHHhCC
Q 002564          723 PPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTD----YIKSLS  798 (907)
Q Consensus       723 ~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~l~~~~  798 (907)
                           -.+-|-|.-                                              .-+....+++    ..++.+
T Consensus       650 -----~~~A~~LA~----------------------------------------------tLd~P~~~f~vi~~~~r~r~  678 (775)
T KOG0319|consen  650 -----YTKAFVLAL----------------------------------------------TLDKPHLVFTVINALYRERD  678 (775)
T ss_pred             -----hHHHHHhHh----------------------------------------------hccCchhHHHHHHHHHhcCC
Confidence                 001111110                                              0001122222    334567


Q ss_pred             CCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHhcCCCHHhHHHHHHHHHHhhccc-cccchHHHHHHHHH
Q 002564          799 PSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGET-VRCHTKLQDKARKL  877 (907)
Q Consensus       799 ~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-~~~~~~~~~~~~~l  877 (907)
                      |..++.+|+.|..               +....+|+|...+=.-.|.--..|..|..+|+.|-.. |.+.|...+.++.|
T Consensus       679 ~e~l~~av~~L~~---------------dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l  743 (775)
T KOG0319|consen  679 PEELGQAVFRLNE---------------DQPEALLQFVVKWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEAL  743 (775)
T ss_pred             cHHHHHHHHHhhh---------------hhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhh
Confidence            8899999999985               7889999999999888889999999999999987543 56788999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q 002564          878 LEVQSAVWQKIDKMFQ  893 (907)
Q Consensus       878 ~~~~~~~~~~~~~~~~  893 (907)
                      ....++-..|++++.+
T Consensus       744 ~PYtqRHf~Rid~~~~  759 (775)
T KOG0319|consen  744 LPYTQRHFRRIDRLVQ  759 (775)
T ss_pred             hhHHHHHHHHHHHHhh
Confidence            9999999999999976

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.5e-56  Score=459.74  Aligned_cols=773  Identities=15%  Similarity=0.213  Sum_probs=529.4

Q ss_pred             cccceeeEeecCCcc---eeEEEcCCeEEEEEEeCCeEEEEEcCcceEEEec--CCCCcceEEEEEecCeEEEEEcC---
Q 002564            4 FEPYKAIGYITSSVP---FSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVG--PQLPKKIRALASYRDYTFAAYGN---   75 (907)
Q Consensus         4 ~~~~r~~g~v~~~~~---~~~~~~~~~~~~~~~~~~~v~iwd~~~~~~~~~~--~~~~~~I~~la~~~~~~~~a~g~---   75 (907)
                      |.|--+.|.|.+...   |.+...+....+++++.-.+.+||++++......  ......|+|+..+++...+|.|.   
T Consensus         8 ye~~~~fgviaS~~aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDG   87 (888)
T KOG0306|consen    8 YEPAAVFGVIASEVANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADG   87 (888)
T ss_pred             ccccceeeeeecCccceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCc
Confidence            566677888876433   3333344577888888899999999999544322  23456899999999999887764   


Q ss_pred             eEEEEeCC--eeEEEEcccccceEEEEee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCC
Q 002564           76 HIAVVKRA--HQVATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL  151 (907)
Q Consensus        76 ~I~vw~~~--~~~~~~~~h~~~V~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  151 (907)
                      .|++|+..  ....++.||...|+.+.++  |..|+|||.|+.|.+||+-...-    ...+.+|...+....|..+.  
T Consensus        88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G----l~rL~GHkd~iT~~~F~~~~--  161 (888)
T KOG0306|consen   88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG----LFRLRGHKDSITQALFLNGD--  161 (888)
T ss_pred             eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee----eEEeecchHHHhHHhccCCC--
Confidence            49999976  6677799999999999985  89999999999999999987766    66777888777777777766  


Q ss_pred             CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCC------------ceEEEE
Q 002564          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD------------EELVTF  219 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~------------~~~~~~  219 (907)
                      +.+++.+.|+.|++||+++..|..+.-.|.+.|.++++.+  +.+++++.|+.+++|++...            +...++
T Consensus       162 ~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~  239 (888)
T KOG0306|consen  162 SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF  239 (888)
T ss_pred             eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence            7899999999999999999999999999999999999998  68999999999999999311            112222


Q ss_pred             eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceee-----------------------------------eeee
Q 002564          220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-----------------------------------SVIR  264 (907)
Q Consensus       220 ~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~-----------------------------------~~~~  264 (907)
                      ....++..-.++..++++ +++.-+.|..+.++.+.+.+.+                                   ..++
T Consensus       240 ~rqsk~R~i~l~~d~s~r-~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir  318 (888)
T KOG0306|consen  240 IRQSKGREINLVTDFSDR-FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR  318 (888)
T ss_pred             eeccCCceeEEeecCccc-EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee
Confidence            222244455555556666 6666666777777766432110                                   0000


Q ss_pred             cccccCeEEEEEecCCC---EEEEEcCCCcEEEEEccCCCCC------cceeEeccCCCCCCeEEEEecCCCEEEEEeCC
Q 002564          265 EAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTTDGD------PRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  335 (907)
Q Consensus       265 ~~h~~~V~~l~~~~~~~---~l~s~~~d~~i~vw~~~~~~~~------~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d  335 (907)
                        -...+.++.|.|++.   .|+. -.++++..|.++.....      ...+...... ..|.+++++.+...+++|+ .
T Consensus       319 --~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR-~dVRsl~vS~d~~~~~Sga-~  393 (888)
T KOG0306|consen  319 --TSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHR-SDVRSLCVSSDSILLASGA-G  393 (888)
T ss_pred             --chhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccch-hheeEEEeecCceeeeecC-C
Confidence              123455555555432   2222 34556666655541111      0011111111 2356666665554444443 3


Q ss_pred             CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecce
Q 002564          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (907)
Q Consensus       336 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~  415 (907)
                      +++++|+..+.++.+.+..+..                   .+..+     -.|+..+..+...|.+.++|+....+   
T Consensus       394 ~SikiWn~~t~kciRTi~~~y~-------------------l~~~F-----vpgd~~Iv~G~k~Gel~vfdlaS~~l---  446 (888)
T KOG0306|consen  394 ESIKIWNRDTLKCIRTITCGYI-------------------LASKF-----VPGDRYIVLGTKNGELQVFDLASASL---  446 (888)
T ss_pred             CcEEEEEccCcceeEEeccccE-------------------EEEEe-----cCCCceEEEeccCCceEEEEeehhhh---
Confidence            4566666666666666655311                   01111     12344555555666666666655433   


Q ss_pred             eeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----CccceeeeccccccccCcCCcEEEEEEcCCCCEEE
Q 002564          416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI  490 (907)
Q Consensus       416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  490 (907)
                       +...+.|.+.+.+++.+||+..+++|+.|.+|++|+..-     |.....+... ....-.-...|.|+.+|||+++|+
T Consensus       447 -~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~-~~rtLel~ddvL~v~~Spdgk~La  524 (888)
T KOG0306|consen  447 -VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK-HTRTLELEDDVLCVSVSPDGKLLA  524 (888)
T ss_pred             -hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec-cceEEeccccEEEEEEcCCCcEEE
Confidence             223346779999999999999999999999999999642     2221111100 000113457899999999999999


Q ss_pred             EEecCCeEEEEECCCCceeeeeec-CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCC
Q 002564          491 SAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG  569 (907)
Q Consensus       491 s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg  569 (907)
                      .+-.|.+++||-+++-+..-.+.+ .-||.|+..|||++++++|+.|.+|+||-++-|.|.+.+-+|.+.|.++.|-|..
T Consensus       525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~  604 (888)
T KOG0306|consen  525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT  604 (888)
T ss_pred             EEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc
Confidence            999999999999999887666554 4899999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEeCCCcEEEEEcCCCceeeEeeeCC-ceEEEEECCCCceEEEEEecCCeEEEeecccccccCCCCccCCCCCcce
Q 002564          570 KWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIV  648 (907)
Q Consensus       570 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~~~~~~~~~~~~~~~  648 (907)
                      ..+.++|.|+.|+-||-..-++++.+.+|. .|++++.+|+|.++++++.|. +|++|.-               .+++.
T Consensus       605 ~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~-sIRlwE~---------------tde~~  668 (888)
T KOG0306|consen  605 HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK-SIRLWER---------------TDEIL  668 (888)
T ss_pred             eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCc-eeEeeec---------------cCcce
Confidence            999999999999999999999999998765 499999999999999999999 6999983               12211


Q ss_pred             eecCCCccCCCCccCCCCCCCCCccCCCCCCCCCCCCCccccccCceeecCCchhhhhhccchHHHhhhCCCCCCCCCCC
Q 002564          649 SVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPE  728 (907)
Q Consensus       649 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tls~~p~~~~~~l~~l~~i~~r~kp~~~~~~~~  728 (907)
                      -+....       +.|.+++.|  .-...+++    ...+...++..-.+    ++              |..|..|..|
T Consensus       669 ~lEeek-------E~ErEe~yE--~l~~~~e~----~~~~~~~~g~~~~~----sk--------------kTieSvk~aE  717 (888)
T KOG0306|consen  669 ILEEEK-------EGEREEEYE--TLLASEEV----VAGDGSADGDAGVA----SK--------------KTIESVKSAE  717 (888)
T ss_pred             eeehhh-------hhhhHHHHH--Hhhhhccc----ccCCCcccccccch----hh--------------hhhHHHHHHH
Confidence            111100       000000000  00000000    00000000000000    00              1111111110


Q ss_pred             CCCccccCCCCCCcccccCCCCCCcccchhhhccCCCCCCCCccHHHHHHhhccccCChHHHHHHHHhCCCCcchheecc
Q 002564          729 KAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRM  808 (907)
Q Consensus       729 ~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~s~~~~ei~~  808 (907)
                      +.=          .-.+....+..+.      +.....  .+..|+...+..    ..-.-+++.|+..-.|.+|..+-.
T Consensus       718 ~i~----------ea~di~~~e~~~~------ee~~~g--~P~npll~a~~k----s~e~yi~dtl~~Ir~S~Ld~aLll  775 (888)
T KOG0306|consen  718 RIL----------EALDIGREELTQL------EEYSPG--HPHNPLLNAYNK----SPEKYIVDTLMKIRASELDDALLL  775 (888)
T ss_pred             HHH----------HHHHHHHHHHHhH------HhhcCC--CCCcHHHHHhcC----CHHHHHHHHHHhcchhhhhhhhee
Confidence            000          0000000000000      000001  133444444442    222668999999999999988777


Q ss_pred             ccccCCCccccccCcchHHHHHHHHHHHHHHHhcCCCHHhHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Q 002564          809 LQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKI  888 (907)
Q Consensus       809 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~l~~~~~~~~~~~  888 (907)
                      |.               .++...+|+|+.+.++.+...||+...+-.++|+|-+.|++++++++.|+++++.+++.-+++
T Consensus       776 lP---------------fS~V~~vl~~i~~~~q~~~~veLv~rv~~fL~rih~~~it~~~~~kp~l~~i~s~l~~~v~q~  840 (888)
T KOG0306|consen  776 LP---------------FSYVLDVLKFIDECIQRKSKVELVCRVLFFLLRIHHKQITAHKNMKPLLEKIKSKLREIVEQL  840 (888)
T ss_pred             cc---------------HHHHHHHHHHHHHHHcCCCcceeEeeeeeehhhhhhhhhccccchHHHHHHHHHHHHHHHHHh
Confidence            64               588999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccceeeehhcc
Q 002564          889 DKMFQSARCVVSFLS  903 (907)
Q Consensus       889 ~~~~~~~~~~~~~~~  903 (907)
                      ++.+++|+.-++||+
T Consensus       841 rdv~G~NlagL~~l~  855 (888)
T KOG0306|consen  841 RDVLGFNLAGLSLLK  855 (888)
T ss_pred             hhhhhhhhhHHHHHH
Confidence            999999999999986

>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=100.00  E-value=6.5e-59  Score=449.19  Aligned_cols=214  Identities=42%  Similarity=0.705  Sum_probs=187.3

Q ss_pred             CCCCCccccccCceeecCCchhhhhhccchHHHhhhCCCCCCCCCCCCCCccccCCCCCCcccc--cCCCCCCcccch-h
Q 002564          682 FGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEIL--FKPSESTKEDTE-S  758 (907)
Q Consensus       682 ~~~~~~~~~~~~l~tls~~p~~~~~~l~~l~~i~~r~kp~~~~~~~~~~pffl~~~~~~~~~~~--~~~~~~~~~~~~-~  758 (907)
                      ..|.+++||+++|||||++|++||++|+|||+||+||||+||||+|++|||||||++++++.|.  ......++...+ .
T Consensus        17 ~~~~s~~Qi~~~LiTLS~lP~srWq~Ll~LD~IK~RNKPkeppKkPe~APFFLpt~~~~~~~~~~~~~~~~~~~~~~~~~   96 (237)
T PF04192_consen   17 IEYSSPEQIDEDLITLSGLPRSRWQNLLNLDVIKERNKPKEPPKKPEKAPFFLPTLPGLEPRFQDAFESEEEEEEEEERS   96 (237)
T ss_pred             cccCChhhhCccceeeccCCHHHHHHHHHHHHHHHhCCCCCCCCCcCCCCcccCcCCCCCccccccccccccccchhhhh
Confidence            4589999999999999999999999999999999999999999999999999999999998872  222221111111 1


Q ss_pred             hhccCC-CCCCCCccHHHHHHhhccccCChHHHHHHHHhCCCCcchheeccccccCCCccccccCcchHHHHHHHHHHHH
Q 002564          759 LKVGNK-TKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLI  837 (907)
Q Consensus       759 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  837 (907)
                      ...++. ......+|+|+++|.++...+||.++++|||+|+||+||+|||+|++..         ++++.+|..||+||+
T Consensus        97 ~~~~~~~~~~~~~~s~f~~lL~~~~~~~dy~~~~~~LkslsPS~iDlEIRsL~~~~---------~~~~~~l~~Fl~~l~  167 (237)
T PF04192_consen   97 RLRKLKKDNSLDFESEFTRLLRSASESEDYSEFLEYLKSLSPSAIDLEIRSLSPES---------GGSYEELVSFLRFLT  167 (237)
T ss_pred             hhhhcccccCccccCHHHHHHHhhcccccHHHHHHHHHhCChhHHHHHHHhccCcc---------CCcHHHHHHHHHHHH
Confidence            111222 2334578999999999999999999999999999999999999999633         456899999999999


Q ss_pred             HHHhcCCCHHhHHHHHHHHHHhhccccccchH---HHHHHHHHHHHHHHHHHHHHHhhccceeeehhccc
Q 002564          838 HEISCRNNFEFIQAVIRLFLKIHGETVRCHTK---LQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSN  904 (907)
Q Consensus       838 ~~~~~~~~~~~~~~~~~~~l~~h~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  904 (907)
                      ++|++++||||+||||++|||+||++|++.+.   |++.|++|+++|++.|.+|+++|+||+|+|+|+||
T Consensus       168 ~~L~~~~dfElvQa~l~vFLk~Hgd~i~~~~~~~~L~~~l~~l~~~q~~~w~~L~~l~~~~~cvv~fl~~  237 (237)
T PF04192_consen  168 YRLKSRRDFELVQAYLSVFLKVHGDVIMESEEEEELREALEELREAQESEWKRLDDLFQYCSCVVSFLRS  237 (237)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Confidence            99999999999999999999999999999888   99999999999999999999999999999999986

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.1e-49  Score=398.94  Aligned_cols=563  Identities=15%  Similarity=0.194  Sum_probs=442.0

Q ss_pred             CCcceeEEEcCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe---EEEEeCCe---eEEE
Q 002564           15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAH---QVAT   88 (907)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---I~vw~~~~---~~~~   88 (907)
                      .++|..+-......-+.++.++++.+-+++++..+.+...|...++-..++|.|-|+|+|+.   |+||+...   .++.
T Consensus        18 Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn   97 (603)
T KOG0318|consen   18 RGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN   97 (603)
T ss_pred             CCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee
Confidence            34454444434445566778999999999999999888899999999999999999999875   99999643   3443


Q ss_pred             -EcccccceEEEEe--eCCEEEEEecC--CcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcE
Q 002564           89 -WSRHSAKVNLLLL--FGEHILSIDID--GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL  163 (907)
Q Consensus        89 -~~~h~~~V~~l~~--~g~~l~s~~~d--g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i  163 (907)
                       ++.-.++|..|.|  ++++|++.++-  +-.+++-.+++..    +..+.+|...+.+|.|-|... -++++|+.|++|
T Consensus        98 ef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S----vGei~GhSr~ins~~~KpsRP-fRi~T~sdDn~v  172 (603)
T KOG0318|consen   98 EFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS----VGEITGHSRRINSVDFKPSRP-FRIATGSDDNTV  172 (603)
T ss_pred             eeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc----cceeeccceeEeeeeccCCCc-eEEEeccCCCeE
Confidence             7778899999997  58899988852  2234444445666    788999999999999999986 589999999999


Q ss_pred             EEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEe--ecCCCCEEEEEEecCCCCEEE
Q 002564          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAFSSDGQPLLA  241 (907)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~--~~~~~~v~~l~fs~dg~~~l~  241 (907)
                      .+|+=...+.-.++..|..-|.|+.|+|||.++|+++.||+|.+||-++|+.+..+.  ..|++.|.+++|+||+. .++
T Consensus       173 ~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~~~  251 (603)
T KOG0318|consen  173 AFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-QFL  251 (603)
T ss_pred             EEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-eEE
Confidence            999987788888899999999999999999999999999999999999999999997  24589999999999999 899


Q ss_pred             EEeCCCcEEEEECCCceeeeeeecccc--cCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeE
Q 002564          242 SGASSGVISIWNLEKRRLQSVIREAHD--NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC  319 (907)
Q Consensus       242 sg~~dg~I~iwd~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~  319 (907)
                      +++.|.+++|||+.+++++.++..+..  ..-..+-|-  ...|++.+.+|.|.+++.+..    ..++.+.||...|++
T Consensus       252 T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~----~~~~~i~GHnK~ITa  325 (603)
T KOG0318|consen  252 TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP----SVLKVISGHNKSITA  325 (603)
T ss_pred             EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC----ChhheecccccceeE
Confidence            999999999999999999999874443  344455565  458999999999999976654    356777899999999


Q ss_pred             EEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCC
Q 002564          320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (907)
Q Consensus       320 i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  399 (907)
                      +..++++++|++|+.||.|.-|+..++...+.....+                -..|..+...     +...+++++.+ 
T Consensus       326 Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h----------------~nqI~~~~~~-----~~~~~~t~g~D-  383 (603)
T KOG0318|consen  326 LTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH----------------TNQIKGMAAS-----ESGELFTIGWD-  383 (603)
T ss_pred             EEEcCCCCEEEeeccCceEEEEecCCccccccccccc----------------cceEEEEeec-----CCCcEEEEecC-
Confidence            9999999999999999999999998776554332211                1223333322     12344555544 


Q ss_pred             ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEE
Q 002564          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG  479 (907)
Q Consensus       400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  479 (907)
                      .++++.++............   -.....+++..++|.++++.+.++.+.+-+...-..            ..-.-...+
T Consensus       384 d~l~~~~~~~~~~t~~~~~~---lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~------------~~~~y~~s~  448 (603)
T KOG0318|consen  384 DTLRVISLKDNGYTKSEVVK---LGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSS------------IPIGYESSA  448 (603)
T ss_pred             CeEEEEecccCcccccceee---cCCCceeEEEcCCCCEEEEEecCcEEEEecCCccee------------eccccccce
Confidence            45566655443332222111   123455899999998888887776554433322111            123345789


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCCcee---eeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeec-
Q 002564          480 VACDSTNTLMISAGYHGDIKVWDFKGRDLK---SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-  555 (907)
Q Consensus       480 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~-  555 (907)
                      ++++|++..++.|+.||.|++|.+....+.   ...++.++|++++||||+.+||++...+.+.+||+.+++......+ 
T Consensus       449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~F  528 (603)
T KOG0318|consen  449 VAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAF  528 (603)
T ss_pred             EEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeee
Confidence            999999999999999999999999986643   3456679999999999999999999999999999999887444444 


Q ss_pred             CCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeee--CCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564          556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV--DVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       556 h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~--~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (907)
                      |+.+|.+++|+|++.++||||.|-+|.||++......-.++.  ...|+.+.|- |...|++++.|.+ |++|++
T Consensus       529 HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~-iK~W~v  601 (603)
T KOG0318|consen  529 HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDAN-IKVWNV  601 (603)
T ss_pred             eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcce-eEEecc
Confidence            999999999999999999999999999999987544433332  2339999996 4567889999994 999986

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-48  Score=391.43  Aligned_cols=515  Identities=17%  Similarity=0.227  Sum_probs=408.0

Q ss_pred             EcCCeEEEEEEeCCeEEEEEcCcceEEE--ecCCCCcceEEEEEecCeEEEEE-cC------eEEEEeCCeeEEEEcccc
Q 002564           23 RLGTENFVTVSVGKAFHIYNCAKLNLVL--VGPQLPKKIRALASYRDYTFAAY-GN------HIAVVKRAHQVATWSRHS   93 (907)
Q Consensus        23 ~~~~~~~~~~~~~~~v~iwd~~~~~~~~--~~~~~~~~I~~la~~~~~~~~a~-g~------~I~vw~~~~~~~~~~~h~   93 (907)
                      .|.+.|++++...|+++|||...-..+.  ..+...++|..++|+.|++.++. |.      .+..||.+..+..+.||.
T Consensus        68 SPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhS  147 (603)
T KOG0318|consen   68 SPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHS  147 (603)
T ss_pred             CCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccc
Confidence            3778899999999999999998744333  44778999999999999776655 42      299999999999999999


Q ss_pred             cceEEEEee---CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCC
Q 002564           94 AKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST  170 (907)
Q Consensus        94 ~~V~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~  170 (907)
                      ..|.++.+-   .-+++||++|++|.+|+=...+.    ..++..|..++.++.++|++  .++++++.||++.+||=++
T Consensus       148 r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF----k~s~r~HskFV~~VRysPDG--~~Fat~gsDgki~iyDGkt  221 (603)
T KOG0318|consen  148 RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF----KSSFREHSKFVNCVRYSPDG--SRFATAGSDGKIYIYDGKT  221 (603)
T ss_pred             eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee----eecccccccceeeEEECCCC--CeEEEecCCccEEEEcCCC
Confidence            999999974   45799999999999998665555    55667788999999999999  8999999999999999999


Q ss_pred             CeEEEEEc---CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCC--CCEEEEEEecCCCCEEEEEeC
Q 002564          171 KKKLYEFK---GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR--GAVTALAFSSDGQPLLASGAS  245 (907)
Q Consensus       171 ~~~~~~~~---~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~--~~v~~l~fs~dg~~~l~sg~~  245 (907)
                      |+.+..+.   +|.+.|.+++|+||+..+++++.|.+++|||+.+.+.+.++.....  ..-..+-|.  +. .|++-+.
T Consensus       222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd-~lItVSl  298 (603)
T KOG0318|consen  222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KD-HLITVSL  298 (603)
T ss_pred             ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CC-eEEEEEc
Confidence            99999998   8999999999999999999999999999999999999999987643  344556665  23 6888899


Q ss_pred             CCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecC
Q 002564          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (907)
Q Consensus       246 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (907)
                      +|+|.+++.........+. +|...|+++..+|++.+|++|+.||.|.-|+...+....   ..-.+|...|.+++-+..
T Consensus       299 ~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~---~~g~~h~nqI~~~~~~~~  374 (603)
T KOG0318|consen  299 SGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR---LAGKGHTNQIKGMAASES  374 (603)
T ss_pred             CcEEEEecccCCChhheec-ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc---cccccccceEEEEeecCC
Confidence            9999999999999888888 999999999999999999999999999999887654321   112579999999998864


Q ss_pred             CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEE
Q 002564          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (907)
Q Consensus       326 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w  405 (907)
                      + .+++++.|.++++.++...........               .+...|. .++..   ..+...+++|  ....+.+-
T Consensus       375 ~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~---------------~lg~QP~-~lav~---~d~~~avv~~--~~~iv~l~  432 (603)
T KOG0318|consen  375 G-ELFTIGWDDTLRVISLKDNGYTKSEVV---------------KLGSQPK-GLAVL---SDGGTAVVAC--ISDIVLLQ  432 (603)
T ss_pred             C-cEEEEecCCeEEEEecccCccccccee---------------ecCCCce-eEEEc---CCCCEEEEEe--cCcEEEEe
Confidence            4 688999999999998865443222100               0000111 00000   0001112222  11112111


Q ss_pred             EeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC
Q 002564          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (907)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  485 (907)
                      +......      .  .-.....+++++|+++.+++|+.||.|++|.+..+.......      ...|.++|++++++||
T Consensus       433 ~~~~~~~------~--~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~------~~~h~a~iT~vaySpd  498 (603)
T KOG0318|consen  433 DQTKVSS------I--PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK------LLEHRAAITDVAYSPD  498 (603)
T ss_pred             cCCccee------e--ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee------eecccCCceEEEECCC
Confidence            1111100      0  112567899999999999999999999999998876544322      1489999999999999


Q ss_pred             CCEEEEEecCCeEEEEECCCCceee-eee-cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-eeEEEeecCCCCeee
Q 002564          486 NTLMISAGYHGDIKVWDFKGRDLKS-RWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITD  562 (907)
Q Consensus       486 ~~~l~s~~~dg~i~iwd~~~~~~~~-~~~-~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-~~~~~~~~h~~~I~~  562 (907)
                      +.+|+++...+.+.+||..+.+... .+. |...|.+++|+|++.++|+|+-|-.|.||+++.. +.+....+|...|+.
T Consensus       499 ~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~  578 (603)
T KOG0318|consen  499 GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNS  578 (603)
T ss_pred             CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCcee
Confidence            9999999999999999999887632 223 5589999999999999999999999999999865 335555679988999


Q ss_pred             EEECCCCcEEEEEeCCCcEEEEEcC
Q 002564          563 FCFSEDGKWLLSSGMDGSLRIWDVI  587 (907)
Q Consensus       563 l~fspdg~~l~s~s~Dg~I~vwd~~  587 (907)
                      +.|-.+ ..|++++.|..|++|++.
T Consensus       579 v~wlde-~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  579 VAWLDE-STVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EEEecC-ceEEeccCcceeEEeccc
Confidence            999754 579999999999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.6e-47  Score=397.12  Aligned_cols=521  Identities=17%  Similarity=0.233  Sum_probs=429.0

Q ss_pred             CCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEE-cCe--EEEEe-CCeeEEEEcccccceEEEE
Q 002564           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNH--IAVVK-RAHQVATWSRHSAKVNLLL  100 (907)
Q Consensus        25 ~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~-g~~--I~vw~-~~~~~~~~~~h~~~V~~l~  100 (907)
                      ++.+-++.++|+.+.+||+++.+-....-.+...|++++.||+|.++.+ ..+  ..+-+ ..+-+...-.-..+|.++.
T Consensus        24 ~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~  103 (893)
T KOG0291|consen   24 KDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIK  103 (893)
T ss_pred             CCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEE
Confidence            5667788899999999999987665555567889999999999888755 332  22223 2332332222356788887


Q ss_pred             e--eCCEEEEEecCCcEEEEecCCCCc-c---ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeE-
Q 002564          101 L--FGEHILSIDIDGNMFIWAFKGIEE-N---LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK-  173 (907)
Q Consensus       101 ~--~g~~l~s~~~dg~v~vWd~~~~~~-~---~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~-  173 (907)
                      |  +|.++|.+. .+.+.||....... .   ....++...+...+.+.-|+.|.  +.+++|+.|-++++|.++..+. 
T Consensus       104 fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DS--r~l~~gsrD~s~rl~~v~~~k~~  180 (893)
T KOG0291|consen  104 FSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDS--RLLVTGSRDLSARLFGVDGNKNL  180 (893)
T ss_pred             ECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCC--ceEEeccccceEEEEEecccccc
Confidence            5  788888877 78899999876544 1   12245566677778888899999  8999999999999999987766 


Q ss_pred             -EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccC-----------------------Cce-----E-----EEE
Q 002564          174 -LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-----------------------DEE-----L-----VTF  219 (907)
Q Consensus       174 -~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~-----------------------~~~-----~-----~~~  219 (907)
                       .+.+.+|...|.++-|..+..-+.+.+.||.+.+|....                       ++.     .     ..+
T Consensus       181 ~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~  260 (893)
T KOG0291|consen  181 FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHY  260 (893)
T ss_pred             ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeee
Confidence             677899999999999999999999999999999998761                       111     1     111


Q ss_pred             eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCC-CcEEEEEcc
Q 002564          220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-NSIKMWIFD  298 (907)
Q Consensus       220 ~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-~~i~vw~~~  298 (907)
                      .......|++.+|++... +||+|-..|...+|.+....+++.+. -...+|..+.|+..|.+++.|+.. |.+-||++.
T Consensus       261 ln~~~~kvtaa~fH~~t~-~lvvgFssG~f~LyelP~f~lih~LS-is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq  338 (893)
T KOG0291|consen  261 LNQNSSKVTAAAFHKGTN-LLVVGFSSGEFGLYELPDFNLIHSLS-ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ  338 (893)
T ss_pred             ecccccceeeeeccCCce-EEEEEecCCeeEEEecCCceEEEEee-cccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence            111236899999999877 99999999999999999999999998 566899999999999999998864 899999987


Q ss_pred             CCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeE
Q 002564          299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (907)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  378 (907)
                      ..    ..+....+|...+++++|+|||+++++|+.||.|++||..++-+..++                          
T Consensus       339 sE----sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF--------------------------  388 (893)
T KOG0291|consen  339 SE----SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF--------------------------  388 (893)
T ss_pred             cc----ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe--------------------------
Confidence            76    355666799999999999999999999999999999998765544443                          


Q ss_pred             eeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 002564          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  458 (907)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~  458 (907)
                                                                ..|...++.+.|+..|+.+++.+-||+|+.||+.....
T Consensus       389 ------------------------------------------teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  389 ------------------------------------------TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             ------------------------------------------ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence                                                      25679999999999999999999999999999999999


Q ss_pred             ceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCC-eEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCC
Q 002564          459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADD  536 (907)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d  536 (907)
                      .++|.       ........|++.+|.|..++.|+.|. .|.+|++++|+++..+.++ +||.+++|+|++..||+++.|
T Consensus       427 fRTft-------~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD  499 (893)
T KOG0291|consen  427 FRTFT-------SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD  499 (893)
T ss_pred             eeeec-------CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence            98887       35566788999999999999998776 5999999999999999776 999999999999999999999


Q ss_pred             CeEEEEEcccc-eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeee------------------
Q 002564          537 LVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV------------------  597 (907)
Q Consensus       537 g~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~------------------  597 (907)
                      .+|++||+-.. ..+.++. +...++.++|+|||+-|++++.||.|.+||+..+..+..+.+                  
T Consensus       500 kTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~  578 (893)
T KOG0291|consen  500 KTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN  578 (893)
T ss_pred             ceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence            99999998755 3444554 778899999999999999999999999999988766644432                  


Q ss_pred             ---CCceEEEEECCCCceEEEEEecCCeEEEeecccc
Q 002564          598 ---DVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM  631 (907)
Q Consensus       598 ---~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~  631 (907)
                         ....+.+++|+||.++++|+... .|++|+++..
T Consensus       579 sa~~K~Ftti~ySaDG~~IlAgG~sn-~iCiY~v~~~  614 (893)
T KOG0291|consen  579 SAKGKTFTTICYSADGKCILAGGESN-SICIYDVPEG  614 (893)
T ss_pred             cccCCceEEEEEcCCCCEEEecCCcc-cEEEEECchh
Confidence               13489999999999999999888 5999997643

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-50  Score=390.17  Aligned_cols=366  Identities=21%  Similarity=0.335  Sum_probs=298.8

Q ss_pred             eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEE
Q 002564          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (907)
Q Consensus       172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i  251 (907)
                      ++-..+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+...| ...|.|++|+|||+ .||+|+.||.|++
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH-~~WVlcvawsPDgk-~iASG~~dg~I~l  183 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH-KNWVLCVAWSPDGK-KIASGSKDGSIRL  183 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC-ccEEEEEEECCCcc-hhhccccCCeEEE
Confidence            456678999999999999999999999999999999999999999999887 89999999999999 9999999999999


Q ss_pred             EECCCceeeeeeecccccCeEEEEEec-----CCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC
Q 002564          252 WNLEKRRLQSVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (907)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g  326 (907)
                      ||..+|+.+..-..+|...|++++|.|     ..++|++++.||+++|||+..+    .++..+.||+.+|+|++|-.+|
T Consensus       184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----~~~~~lsgHT~~VTCvrwGG~g  259 (480)
T KOG0271|consen  184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----TCVRTLSGHTASVTCVRWGGEG  259 (480)
T ss_pred             ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc----eEEEEeccCccceEEEEEcCCc
Confidence            999999877666569999999999976     5679999999999999988765    6788899999999999998776


Q ss_pred             CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEE
Q 002564          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (907)
Q Consensus       327 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~  406 (907)
                       ++++++.|++|++|+...+...+++.                                                     
T Consensus       260 -liySgS~DrtIkvw~a~dG~~~r~lk-----------------------------------------------------  285 (480)
T KOG0271|consen  260 -LIYSGSQDRTIKVWRALDGKLCRELK-----------------------------------------------------  285 (480)
T ss_pred             -eEEecCCCceEEEEEccchhHHHhhc-----------------------------------------------------
Confidence             89999999999999987766555443                                                     


Q ss_pred             eeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC
Q 002564          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN  486 (907)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  486 (907)
                                     +|...|..++++.+-- |=+|.       |+... .....+....   ..+-.  -...+.-..+
T Consensus       286 ---------------GHahwvN~lalsTdy~-LRtga-------f~~t~-~~~~~~se~~---~~Al~--rY~~~~~~~~  336 (480)
T KOG0271|consen  286 ---------------GHAHWVNHLALSTDYV-LRTGA-------FDHTG-RKPKSFSEEQ---KKALE--RYEAVLKDSG  336 (480)
T ss_pred             ---------------ccchheeeeeccchhh-hhccc-------ccccc-ccCCChHHHH---HHHHH--HHHHhhccCc
Confidence                           3445666666654311 01111       11000 0000000000   00000  0001111234


Q ss_pred             CEEEEEecCCeEEEEECCC-Cceeeeee-cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEE
Q 002564          487 TLMISAGYHGDIKVWDFKG-RDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC  564 (907)
Q Consensus       487 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~  564 (907)
                      ..+++|+.|.++.+|+-.. .+++.... +..-|+.+.||||++++|+++-|..|++||..+|+.+.+|+||-+.|..++
T Consensus       337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva  416 (480)
T KOG0271|consen  337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA  416 (480)
T ss_pred             ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence            7899999999999998654 34555554 448899999999999999999999999999999999999999999999999


Q ss_pred             ECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCCCceEEEEEecCCeEEEee
Q 002564          565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       565 fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~  627 (907)
                      ||.|.++|++||.|.++++||+.+.++..-+.+|.. |.++.|+|||..+++++.|. .+++|.
T Consensus       417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk-v~~lw~  479 (480)
T KOG0271|consen  417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK-VLRLWR  479 (480)
T ss_pred             eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCce-EEEeec
Confidence            999999999999999999999999999999997765 99999999999999999999 599995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.7e-49  Score=412.10  Aligned_cols=487  Identities=14%  Similarity=0.208  Sum_probs=410.7

Q ss_pred             cCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEE--EEEcCe---EEEEeCC---eeEEEEcccccc
Q 002564           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTF--AAYGNH---IAVVKRA---HQVATWSRHSAK   95 (907)
Q Consensus        24 ~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~--~a~g~~---I~vw~~~---~~~~~~~~h~~~   95 (907)
                      +.+..+++++.|+.++|||+..+.....+.+|++.|.++.|+|+..+  +++|..   +++||..   .++.++..|.+.
T Consensus       115 ~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~  194 (775)
T KOG0319|consen  115 PTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSA  194 (775)
T ss_pred             CCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhh
Confidence            66788999999999999999999999999999999999999999444  566543   9999954   236669999999


Q ss_pred             eEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCC---CCCCEEEEEecCCcEEEEecCC
Q 002564           96 VNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD---TYLNKVIVGSQEGSLQLWNIST  170 (907)
Q Consensus        96 V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~l~~~s~dg~i~iwd~~~  170 (907)
                      |+++++  |+..+++++.|..|.|||+.+.+.    .++++.-.... .+.+-++   +...++++++.+|.+++||.++
T Consensus       195 vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~----l~~lp~ye~~E-~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es  269 (775)
T KOG0319|consen  195 VTSLAFSEDSLELLSVGRDKVIIVWDLVQYKK----LKTLPLYESLE-SVVRLREELGGKGEYIITAGGSGVVQYWDSES  269 (775)
T ss_pred             eeeeeeccCCceEEEeccCcEEEEeehhhhhh----hheechhhhee-eEEEechhcCCcceEEEEecCCceEEEEeccc
Confidence            999996  899999999999999999976665    44444333332 3334343   1115799999999999999999


Q ss_pred             CeEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcE
Q 002564          171 KKKLYEFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (907)
Q Consensus       171 ~~~~~~~~~h-~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I  249 (907)
                      +++++..+.. ...+..+...+....++..+.|..+.+||.++.+....+.+. .+.|..|+|-.....+||+++..+.+
T Consensus       270 ~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~-ndEI~Dm~~lG~e~~~laVATNs~~l  348 (775)
T KOG0319|consen  270 GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGY-NDEILDMKFLGPEESHLAVATNSPEL  348 (775)
T ss_pred             chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCC-chhheeeeecCCccceEEEEeCCCce
Confidence            9988766543 344677777676667777788899999999999998888876 67899999976555599999999999


Q ss_pred             EEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecC-CCE
Q 002564          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRH  328 (907)
Q Consensus       250 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-g~~  328 (907)
                      ++|++.+..+. .+. +|...|.++....+|-+|+||+.|+++++|.++.......++....+|.+.|.+++++.. ..+
T Consensus       349 r~y~~~~~~c~-ii~-GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf  426 (775)
T KOG0319|consen  349 RLYTLPTSYCQ-IIP-GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF  426 (775)
T ss_pred             EEEecCCCceE-EEe-CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccE
Confidence            99998887776 555 999999999966777899999999999999996666666677788899999999999773 468


Q ss_pred             EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEee
Q 002564          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (907)
Q Consensus       329 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~  408 (907)
                      |+++|.|+++++|++...+.....                      ++                +               
T Consensus       427 fvsvS~D~tlK~W~l~~s~~~~~~----------------------~~----------------~---------------  453 (775)
T KOG0319|consen  427 FVSVSQDCTLKLWDLPKSKETAFP----------------------IV----------------L---------------  453 (775)
T ss_pred             EEEecCCceEEEecCCCccccccc----------------------ce----------------e---------------
Confidence            899999999999998763222110                      00                0               


Q ss_pred             eceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCE
Q 002564          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (907)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  488 (907)
                            ........|...|.+++++|+.+.+++|+.|.+.++|++........+.        +|...|.++.|+|..+.
T Consensus       454 ------~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs--------GH~RGvw~V~Fs~~dq~  519 (775)
T KOG0319|consen  454 ------TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS--------GHTRGVWCVSFSKNDQL  519 (775)
T ss_pred             ------hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee--------CCccceEEEEeccccce
Confidence                  0000112466889999999999999999999999999999888888885        99999999999999999


Q ss_pred             EEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECC
Q 002564          489 MISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (907)
Q Consensus       489 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp  567 (907)
                      ++|++.|++|+||.+.+..++.++.++ +.|..+.|-.++..|++++.||.+++|++.++.|+.++.+|.++|.+++-+|
T Consensus       520 laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~  599 (775)
T KOG0319|consen  520 LATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP  599 (775)
T ss_pred             eEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC
Confidence            999999999999999999999999955 8999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEE
Q 002564          568 DGKWLLSSGMDGSLRIWD  585 (907)
Q Consensus       568 dg~~l~s~s~Dg~I~vwd  585 (907)
                      .+.+++||+.||.|.+|.
T Consensus       600 ~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  600 LLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             ccceeEecCCCeEEEEee
Confidence            999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-50  Score=387.90  Aligned_cols=365  Identities=19%  Similarity=0.329  Sum_probs=311.5

Q ss_pred             eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (907)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd  209 (907)
                      ...+.+|.+.+.++.|+|++  ..|++|+.|.++++||+.+..+.++.++|...|.|++|+|||+.||+|+.||+|++||
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g--~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTG--SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             ccccCCCCCcEEEEEecCCC--ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            45677899999999999999  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCceEEEEeecCCCCEEEEEEec-----CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEE
Q 002564          210 VRYDEELVTFTHSMRGAVTALAFSS-----DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM  284 (907)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~l~fs~-----dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  284 (907)
                      .++|+++..-..+|...|++++|.|     ..+ +||+++.||.++|||+..++++..+. +|+.+|+|+.|--+| +++
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~g-liy  262 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEG-LIY  262 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCc-eEE
Confidence            9999988777767799999999976     455 89999999999999999999999998 999999999997555 999


Q ss_pred             EEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhc
Q 002564          285 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL  364 (907)
Q Consensus       285 s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  364 (907)
                      +++.|++|++|+...+    .+.+.+.||...|+.++.+.+- .|=+|..|.+=+-        ....+  ...+++.. 
T Consensus       263 SgS~DrtIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy-~LRtgaf~~t~~~--------~~~~s--e~~~~Al~-  326 (480)
T KOG0271|consen  263 SGSQDRTIKVWRALDG----KLCRELKGHAHWVNHLALSTDY-VLRTGAFDHTGRK--------PKSFS--EEQKKALE-  326 (480)
T ss_pred             ecCCCceEEEEEccch----hHHHhhcccchheeeeeccchh-hhhcccccccccc--------CCChH--HHHHHHHH-
Confidence            9999999999976543    6788899999999999988652 2334444422111        11110  00111100 


Q ss_pred             cchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC
Q 002564          365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  444 (907)
Q Consensus       365 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  444 (907)
                      +                                                              ...+.-..|..+++|+.
T Consensus       327 r--------------------------------------------------------------Y~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  327 R--------------------------------------------------------------YEAVLKDSGERLVSGSD  344 (480)
T ss_pred             H--------------------------------------------------------------HHHhhccCcceeEEecC
Confidence            0                                                              00011123578999999


Q ss_pred             CCcEEEEeCCCCc-cceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEE
Q 002564          445 GGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIV  522 (907)
Q Consensus       445 dg~i~i~d~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~  522 (907)
                      |+++.+|+....+ ++...        .+|..-|+.+.|+||++++++++-|..|++||..+|+.+.++..+ .+|..++
T Consensus       345 d~tlflW~p~~~kkpi~rm--------tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva  416 (480)
T KOG0271|consen  345 DFTLFLWNPFKSKKPITRM--------TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA  416 (480)
T ss_pred             CceEEEecccccccchhhh--------hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence            9999999976544 44444        499999999999999999999999999999999999999999966 9999999


Q ss_pred             EeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564          523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (907)
Q Consensus       523 ~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd  585 (907)
                      |+.|.++|++|+.|.++++||+.+.++...+.||.+.|.++.|+|||..+++|+.|..+++|.
T Consensus       417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999999999999999999999999999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-45  Score=383.21  Aligned_cols=482  Identities=15%  Similarity=0.244  Sum_probs=395.1

Q ss_pred             cCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe---EEEEeCCe--eEEEEcccccceEE
Q 002564           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAH--QVATWSRHSAKVNL   98 (907)
Q Consensus        24 ~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---I~vw~~~~--~~~~~~~h~~~V~~   98 (907)
                      ++.-.+|++-.||.|+||+..+......+.+|...|+++.|+..|..+|+|+.   |.+||.-.  .+.++.||...|+.
T Consensus        75 ~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~  154 (888)
T KOG0306|consen   75 DDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQ  154 (888)
T ss_pred             CCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhH
Confidence            44556788889999999999999999999999999999999999999999876   99999633  36669999999999


Q ss_pred             EEee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCC------
Q 002564           99 LLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST------  170 (907)
Q Consensus        99 l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~------  170 (907)
                      ..|.  .++++|++.|+.|++||+++..+    ..+.-.+.+.++..++++    +.+++++.|+.+.+|++..      
T Consensus       155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhC----f~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~  226 (888)
T KOG0306|consen  155 ALFLNGDSFLVSVSKDSMIKFWDLETQHC----FETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKE  226 (888)
T ss_pred             HhccCCCeEEEEeccCceEEEEeccccee----eeEEecccceEEEEEEec----ceEEEEecCCceEEEEeeccccccc
Confidence            9873  68999999999999999999988    777777888888999888    4688999999999999811      


Q ss_pred             ------------------CeEEEE----------EcCC------------------------------------------
Q 002564          171 ------------------KKKLYE----------FKGW------------------------------------------  180 (907)
Q Consensus       171 ------------------~~~~~~----------~~~h------------------------------------------  180 (907)
                                        ++.+..          +.++                                          
T Consensus       227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~s  306 (888)
T KOG0306|consen  227 TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKS  306 (888)
T ss_pred             ccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhh
Confidence                              001100          0000                                          


Q ss_pred             -------------CCCEEEEEEcCCCC---EEEEEecCCeEEEEEccC-Cce------E--EEEeecCCCCEEEEEEecC
Q 002564          181 -------------GSSISSCVSSPALD---VVAVGCSDGKIHVHNVRY-DEE------L--VTFTHSMRGAVTALAFSSD  235 (907)
Q Consensus       181 -------------~~~I~~l~~sp~~~---~la~g~~dg~I~iwd~~~-~~~------~--~~~~~~~~~~v~~l~fs~d  235 (907)
                                   ...|.++.+.|.++   .|+. ..+..+..|.+.. ++.      +  ..+ .+|...|.+++|+.|
T Consensus       307 l~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d  384 (888)
T KOG0306|consen  307 LSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSD  384 (888)
T ss_pred             HHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecC
Confidence                         23456666666543   2333 6677888888765 211      1  222 345889999999998


Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCC
Q 002564          236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (907)
Q Consensus       236 g~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (907)
                      .. ++++|+ .+.|++|+..+.+++.++.   .+.+.+..|.|.++++++|...|.+.++|+...    .++.....|.+
T Consensus       385 ~~-~~~Sga-~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHdg  455 (888)
T KOG0306|consen  385 SI-LLASGA-GESIKIWNRDTLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLASA----SLVETIRAHDG  455 (888)
T ss_pred             ce-eeeecC-CCcEEEEEccCcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEeehh----hhhhhhhcccc
Confidence            86 666654 6799999999999999997   338899999999999999999999999998765    45666679999


Q ss_pred             CCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEE
Q 002564          316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  395 (907)
Q Consensus       316 ~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  395 (907)
                      .+++++..||++.+++||.|.+|++||..-....                                              
T Consensus       456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~----------------------------------------------  489 (888)
T KOG0306|consen  456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV----------------------------------------------  489 (888)
T ss_pred             ceeeeeecCCCCceEEecCCcEEEEEeEEEEecc----------------------------------------------
Confidence            9999999999999999999999999997532110                                              


Q ss_pred             eeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCC
Q 002564          396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  475 (907)
Q Consensus       396 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  475 (907)
                        ...+-++..+..    ...+    .-+..+.|+.+||||++++++--|.++++|-+.+-+..-.+        ++|.-
T Consensus       490 --~gt~~k~lsl~~----~rtL----el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL--------YGHkL  551 (888)
T KOG0306|consen  490 --PGTQKKVLSLKH----TRTL----ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL--------YGHKL  551 (888)
T ss_pred             --Ccccceeeeecc----ceEE----eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee--------ccccc
Confidence              000000001100    0111    12378999999999999999999999999999998877776        49999


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeee-cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee
Q 002564          476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE  554 (907)
Q Consensus       476 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~  554 (907)
                      +|.|+.++||+++++||+.|..|++|-++-|.+.+.+- |...|.++.|.|+..++.+++.|+.|+-||-...+.++.+.
T Consensus       552 PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~  631 (888)
T KOG0306|consen  552 PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD  631 (888)
T ss_pred             ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec
Confidence            99999999999999999999999999999999888764 55899999999999999999999999999999999999999


Q ss_pred             cCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCC
Q 002564          555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (907)
Q Consensus       555 ~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~  588 (907)
                      +|...|.+++.+|+|.+++++|.|.+||+|....
T Consensus       632 ~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  632 GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            9999999999999999999999999999999654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.5e-42  Score=358.23  Aligned_cols=547  Identities=17%  Similarity=0.230  Sum_probs=393.0

Q ss_pred             CCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe-----EEEEeCC--eeEEEEcccccceE
Q 002564           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH-----IAVVKRA--HQVATWSRHSAKVN   97 (907)
Q Consensus        25 ~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~-----I~vw~~~--~~~~~~~~h~~~V~   97 (907)
                      .-.-++++..|..|.+||.+..++-+....+..+++|+||+++|+|+|+|..     ++||+..  ..++++..|.-.|+
T Consensus        47 p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vt  126 (1080)
T KOG1408|consen   47 PCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVT  126 (1080)
T ss_pred             ccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccce
Confidence            4566889999999999999998888888888999999999999999999873     9999964  45778999999999


Q ss_pred             EEEe--eCCEEEEEec--CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeE
Q 002564           98 LLLL--FGEHILSIDI--DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK  173 (907)
Q Consensus        98 ~l~~--~g~~l~s~~~--dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~  173 (907)
                      +++|  .++|+++.+.  |-.|.+||+.-+..    ...-+ -...+...+|+.++  .++++.+. ..|++|.+..++.
T Consensus       127 cvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~----~asnk-iss~Vsav~fsEdg--SYfvT~gn-rHvk~wyl~~~~K  198 (1080)
T KOG1408|consen  127 CVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSS----GASNK-ISSVVSAVAFSEDG--SYFVTSGN-RHVKLWYLQIQSK  198 (1080)
T ss_pred             eeeecCCCcEEEeeccccceEEEhhhhhhccc----ccccc-cceeEEEEEEccCC--ceeeeeee-eeEEEEEeecccc
Confidence            9997  5899999887  45578898765433    11111 12345677899999  78888854 5699999987763


Q ss_pred             EEE---EcCCCCCEEEEEEcCCCCEEEEEec-------------CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCC
Q 002564          174 LYE---FKGWGSSISSCVSSPALDVVAVGCS-------------DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (907)
Q Consensus       174 ~~~---~~~h~~~I~~l~~sp~~~~la~g~~-------------dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~  237 (907)
                      ...   |.+...-...+.   +..++++++.             .|.+.-+.  +.+.+-++..-......|++.+.+  
T Consensus       199 ykdpiPl~gRs~~lg~lr---~n~f~avaCg~gicAestfait~qGhLvEFS--sRRLLDKWVqcRTTnAnCIcVs~r--  271 (1080)
T KOG1408|consen  199 YKDPIPLPGRSYFLGNLR---FNEFLAVACGVGICAESTFAITAQGHLVEFS--SRRLLDKWVQCRTTNANCICVSSR--  271 (1080)
T ss_pred             ccCCccccchhhhccccc---cchhhhhhhcCcccccceEEEecccceeeec--hhhhhhhhhhhhccccceeeeecc--
Confidence            321   111111111111   1122222222             23222221  222222222221334567777654  


Q ss_pred             CEEEEEeCCCcEEEEECCCceeeeeeecccc-----------------------cCeEEEEEecCCCEEEEEcCCCcEEE
Q 002564          238 PLLASGASSGVISIWNLEKRRLQSVIREAHD-----------------------NAIISLHFFANEPVLMSASADNSIKM  294 (907)
Q Consensus       238 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~-----------------------~~V~~l~~~~~~~~l~s~~~d~~i~v  294 (907)
                       ++++|+.+|.|++|+.++-....++...|.                       ....++.|.+....|.+...|.++++
T Consensus       272 -~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYv  350 (1080)
T KOG1408|consen  272 -LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYV  350 (1080)
T ss_pred             -eEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEE
Confidence             899999999999999887766665553221                       12356788888889999999999999


Q ss_pred             EEccCCCCCcceeEeccCCCCCCeEEEEec-C----------CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N----------GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (907)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~----------g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  363 (907)
                      ||++..+...+... .--|+.-|+.+.-.| +          ...+++|+.|++||+|++........+....+.....+
T Consensus       351 WDvrD~~kvgk~~s-~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~k  429 (1080)
T KOG1408|consen  351 WDVRDVNKVGKCSS-MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSK  429 (1080)
T ss_pred             Eeccccccccceee-eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhc
Confidence            99987765544433 336888888777665 1          23689999999999999987555444433332222221


Q ss_pred             ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (907)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (907)
                      +........+                              +-|. ............-+....++++++||+|++|+.|.
T Consensus       430 i~y~d~~~q~------------------------------~~d~-~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD  478 (1080)
T KOG1408|consen  430 IPYEDSTQQI------------------------------MHDA-SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD  478 (1080)
T ss_pred             CccccCchhh------------------------------hhhc-cCCcccccchhhcCcccceEEEEECCCcceecccC
Confidence            1111110000                              0000 00000111111112346799999999999999999


Q ss_pred             CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcC---CCCEEEEEecCCeEEEEECCCCc-eeeeeec-----
Q 002564          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAGYHGDIKVWDFKGRD-LKSRWEV-----  514 (907)
Q Consensus       444 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-----  514 (907)
                      ..|++++|+++.-.......        +|...|.|+.++.   ..++|++++.|..|.++|....- ++.++..     
T Consensus       479 r~GnlrVy~Lq~l~~~~~~e--------AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI  550 (1080)
T KOG1408|consen  479 RGGNLRVYDLQELEYTCFME--------AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI  550 (1080)
T ss_pred             ccCceEEEEehhhhhhhhee--------cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence            99999999999988777665        9999999999986   35899999999999999976431 1111111     


Q ss_pred             ---------------------------------------------CcceeEEEEeeCCCEEEEEeCCCeEEEEEccccee
Q 002564          515 ---------------------------------------------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (907)
Q Consensus       515 ---------------------------------------------~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~  549 (907)
                                                                   +..+..++..|..+++++++.|..|+|||+++++.
T Consensus       551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq  630 (1080)
T KOG1408|consen  551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ  630 (1080)
T ss_pred             eEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence                                                         14566777888889999999999999999999999


Q ss_pred             EEEeec---CCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCCCceEEEEEecCCeEEE
Q 002564          550 VRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYL  625 (907)
Q Consensus       550 ~~~~~~---h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~l  625 (907)
                      ++.|+|   |.+....+...|.|-||++...|.++.++|..+|+++..+.+|+. |+.+.|++|.+.|++++.|++ |++
T Consensus       631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC-IFv  709 (1080)
T KOG1408|consen  631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC-IFV  709 (1080)
T ss_pred             eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce-EEE
Confidence            999986   667788899999999999999999999999999999999998887 999999999999999999995 999


Q ss_pred             eec
Q 002564          626 WVN  628 (907)
Q Consensus       626 W~~  628 (907)
                      |.+
T Consensus       710 W~l  712 (1080)
T KOG1408|consen  710 WKL  712 (1080)
T ss_pred             EEC
Confidence            987

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.1e-42  Score=338.07  Aligned_cols=279  Identities=21%  Similarity=0.383  Sum_probs=260.9

Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC--CCEEEEEcCCCcEEEEEccCCC
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD  301 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~  301 (907)
                      ..+|..+.|+.|+. +++||+.+|.+++|+..+...+.++. +|...|.++.|+|.  +..++||+.||++++|+++.. 
T Consensus       175 ~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-  251 (459)
T KOG0272|consen  175 TRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-  251 (459)
T ss_pred             CCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence            67999999999999 99999999999999999999999999 99999999999997  568999999999999998875 


Q ss_pred             CCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeee
Q 002564          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (907)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  381 (907)
                         ..+..+.+|...|..++|+|+|++|+|++.|.+-++||+.+......                              
T Consensus       252 ---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~------------------------------  298 (459)
T KOG0272|consen  252 ---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL------------------------------  298 (459)
T ss_pred             ---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh------------------------------
Confidence               56777889999999999999999999999999999999876432211                              


Q ss_pred             cccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccee
Q 002564          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (907)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~  461 (907)
                                                                                                      
T Consensus       299 --------------------------------------------------------------------------------  298 (459)
T KOG0272|consen  299 --------------------------------------------------------------------------------  298 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEE
Q 002564          462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIR  540 (907)
Q Consensus       462 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~  540 (907)
                      .        .+|...|.+++|.+||.+++|||.|..-+|||+.+++++..+..+ .+|..+.|+|+|..||+|+.|++++
T Consensus       299 Q--------EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~k  370 (459)
T KOG0272|consen  299 Q--------EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCK  370 (459)
T ss_pred             h--------cccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEE
Confidence            0        389999999999999999999999999999999999999999877 8999999999999999999999999


Q ss_pred             EEEcccceeEEEeecCCCCeeeEEECC-CCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCCCceEEEEEe
Q 002564          541 LFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHV  618 (907)
Q Consensus       541 v~d~~~~~~~~~~~~h~~~I~~l~fsp-dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spdg~~lat~~~  618 (907)
                      |||++..+.+.++.+|.+-|+.+.|+| .|.+|+|++.|++++||.-.++.+++.+.+|.. |.++.++||+.+++|++.
T Consensus       371 VWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~  450 (459)
T KOG0272|consen  371 VWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF  450 (459)
T ss_pred             EeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc
Confidence            999999999999999999999999999 789999999999999999999999999999876 999999999999999999


Q ss_pred             cCCeEEEee
Q 002564          619 DQNGVYLWV  627 (907)
Q Consensus       619 d~~~i~lW~  627 (907)
                      |. ++++|.
T Consensus       451 DR-T~KLW~  458 (459)
T KOG0272|consen  451 DR-TIKLWR  458 (459)
T ss_pred             Cc-eeeecc
Confidence            98 899996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.2e-42  Score=335.94  Aligned_cols=283  Identities=20%  Similarity=0.326  Sum_probs=260.5

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecC-CCCEEEEEeCCCcEEEEECCCc
Q 002564          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISIWNLEKR  257 (907)
Q Consensus       179 ~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-g~~~l~sg~~dg~I~iwd~~~~  257 (907)
                      +-..+|..+.||++++.||+|+.+|.+++|+..+...+.+|.+| .+.|.++.|+|. ...-||+|+.||++++|++.+.
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH-~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH-TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecc-ccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            45789999999999999999999999999999999999999887 899999999998 3447999999999999999999


Q ss_pred             eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC
Q 002564          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (907)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~  337 (907)
                      .++..+. +|...|..++|+|+|++|+|++.|.+-++||+.+..    .+....||+..|.+++|.+||..+++||.|..
T Consensus       252 ~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~----ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~  326 (459)
T KOG0272|consen  252 TPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS----ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL  326 (459)
T ss_pred             cchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccch----hhHhhcccccccceeEecCCCceeeccCccch
Confidence            9999998 999999999999999999999999999999998774    44556799999999999999999999999998


Q ss_pred             EEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceee
Q 002564          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (907)
Q Consensus       338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~  417 (907)
                      -++||++++.++..                                                                  
T Consensus       327 ~RvWDlRtgr~im~------------------------------------------------------------------  340 (459)
T KOG0272|consen  327 GRVWDLRTGRCIMF------------------------------------------------------------------  340 (459)
T ss_pred             hheeecccCcEEEE------------------------------------------------------------------
Confidence            89998876543221                                                                  


Q ss_pred             ecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCe
Q 002564          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (907)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  497 (907)
                                                                  +        .+|..+|.+++|+|+|..|+||+.|++
T Consensus       341 --------------------------------------------L--------~gH~k~I~~V~fsPNGy~lATgs~Dnt  368 (459)
T KOG0272|consen  341 --------------------------------------------L--------AGHIKEILSVAFSPNGYHLATGSSDNT  368 (459)
T ss_pred             --------------------------------------------e--------cccccceeeEeECCCceEEeecCCCCc
Confidence                                                        1        389999999999999999999999999


Q ss_pred             EEEEECCCCceeeeeecC-cceeEEEEee-CCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEE
Q 002564          498 IKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  575 (907)
Q Consensus       498 i~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~  575 (907)
                      ++|||+...+.+.++..+ .-|+.++|+| .|.+|++++.|++++||...++.+++.+.||.+.|.++..+||+.+++|+
T Consensus       369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~  448 (459)
T KOG0272|consen  369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATS  448 (459)
T ss_pred             EEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence            999999998888888766 7889999998 78899999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEE
Q 002564          576 GMDGSLRIWD  585 (907)
Q Consensus       576 s~Dg~I~vwd  585 (907)
                      +.|.++++|.
T Consensus       449 s~DRT~KLW~  458 (459)
T KOG0272|consen  449 SFDRTIKLWR  458 (459)
T ss_pred             ccCceeeecc
Confidence            9999999995

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=7.2e-38  Score=324.32  Aligned_cols=545  Identities=17%  Similarity=0.208  Sum_probs=390.7

Q ss_pred             CCcceeEEEcCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeE---EEEEcC---eEEEEeCC----e
Q 002564           15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYT---FAAYGN---HIAVVKRA----H   84 (907)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~---~~a~g~---~I~vw~~~----~   84 (907)
                      +.+|-.... +...+++++.+.+|.+||..+-..+...++|.++|+|+.+-|...   ++.+|+   +|.+|...    .
T Consensus        14 ~R~~~v~sw-~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~   92 (764)
T KOG1063|consen   14 NRVPKVSSW-GPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLI   92 (764)
T ss_pred             ccccccccc-cccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheE
Confidence            445544333 667788888999999999999877778899999999999998876   555554   39999854    3


Q ss_pred             eEEEEcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcc--cEEEEcCCCCCCEEEEEecCCc
Q 002564           85 QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFT--PTCIMHPDTYLNKVIVGSQEGS  162 (907)
Q Consensus        85 ~~~~~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~l~~~s~dg~  162 (907)
                      .+.++.+|...+.++.-..........|+++.+||.+..+...  ...+.+..+..  .+.++.|+...-.+++|+.+..
T Consensus        93 ~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~--~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~  170 (764)
T KOG1063|consen   93 KIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFL--LAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFV  170 (764)
T ss_pred             EEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceee--ehheehhhhhHhhHHHhhhccCCcEEEEecCcceE
Confidence            3556888888887776433333333679999999996555211  23333333222  2223445332135667777778


Q ss_pred             EEEEecCC--CeEEEEEcCCCCCEEEEEEcCCCC---EEEEEecCCeEEEEEccCCc-----------------------
Q 002564          163 LQLWNIST--KKKLYEFKGWGSSISSCVSSPALD---VVAVGCSDGKIHVHNVRYDE-----------------------  214 (907)
Q Consensus       163 i~iwd~~~--~~~~~~~~~h~~~I~~l~~sp~~~---~la~g~~dg~I~iwd~~~~~-----------------------  214 (907)
                      |.++.-.+  .+.+..+.||...|.+++|...+.   +||+++.|..|+||.+.-+.                       
T Consensus       171 v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l  250 (764)
T KOG1063|consen  171 VDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMIL  250 (764)
T ss_pred             EEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeee
Confidence            88886543  367788999999999999987654   89999999999999875322                       


Q ss_pred             -eEE------EEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc--eeeeeee----cccccCeEEEEEecCCC
Q 002564          215 -ELV------TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIR----EAHDNAIISLHFFANEP  281 (907)
Q Consensus       215 -~~~------~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~--~~~~~~~----~~h~~~V~~l~~~~~~~  281 (907)
                       .+.      .+..+|...|+++.|+|.+. .|.+++.|.++.+|...+.  --+...+    .+......+..|+|+++
T Consensus       251 ~~i~~~is~eall~GHeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~  329 (764)
T KOG1063|consen  251 EEIQYRISFEALLMGHEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN  329 (764)
T ss_pred             eeEEEEEehhhhhcCcccceEEEEEccchh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC
Confidence             111      12246789999999999997 6888999999999987654  2222222    13455688999999999


Q ss_pred             EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHH
Q 002564          282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA  361 (907)
Q Consensus       282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  361 (907)
                      .+++-+..|..++|. ......+.......||.+.|..+.|+|.|.+|++.|.|.+-|+|..-..+..            
T Consensus       330 ~ii~~g~~Gg~hlWk-t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~------------  396 (764)
T KOG1063|consen  330 VIIAHGRTGGFHLWK-TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE------------  396 (764)
T ss_pred             EEEEecccCcEEEEe-ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc------------
Confidence            999999999999997 3333445566677899999999999999999999999999999864311110            


Q ss_pred             hhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEE
Q 002564          362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  441 (907)
Q Consensus       362 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  441 (907)
                                                                          -+.+..+.-|...++|+++-+....++.
T Consensus       397 ----------------------------------------------------wHEiaRPQiHGyDl~c~~~vn~~~~FVS  424 (764)
T KOG1063|consen  397 ----------------------------------------------------WHEIARPQIHGYDLTCLSFVNEDLQFVS  424 (764)
T ss_pred             ----------------------------------------------------eeeecccccccccceeeehccCCceeee
Confidence                                                                1112222233444555555554344444


Q ss_pred             EeCCCcEEEEeCC-------------------------------------------CCcc------------ceeeeccc
Q 002564          442 GTAGGWIERFNLQ-------------------------------------------SGIS------------RGSYLDMS  466 (907)
Q Consensus       442 g~~dg~i~i~d~~-------------------------------------------~~~~------------~~~~~~~~  466 (907)
                      |.....+++|+..                                           +|..            ...+..++
T Consensus       425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP  504 (764)
T KOG1063|consen  425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP  504 (764)
T ss_pred             cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence            4444555555432                                           1111            00000000


Q ss_pred             -------------cccccCcCCcEEEEEEcCCCCEEEEEecC-----CeEEEEECCCCceeeeeecC-cceeEEEEeeCC
Q 002564          467 -------------ERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN  527 (907)
Q Consensus       467 -------------~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~  527 (907)
                                   ...+++|...|.+++.+|++++++|++..     ..|++|+..+-.....+..+ -.|+.++||||+
T Consensus       505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg  584 (764)
T KOG1063|consen  505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG  584 (764)
T ss_pred             hHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC
Confidence                         00568999999999999999999999854     35999999988877766655 789999999999


Q ss_pred             CEEEEEeCCCeEEEEEccccee----EEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCC--cee---eEeeeC
Q 002564          528 GLLATVADDLVIRLFDVVALRM----VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA--RQI---DAIHVD  598 (907)
Q Consensus       528 ~~la~~~~dg~I~v~d~~~~~~----~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~--~~~---~~~~~~  598 (907)
                      ++|++.+.|.++.+|.......    ....+.|+.-|.+..|+|++.+++|+|.|.+|+||..+.+  +.+   ..+.+.
T Consensus       585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~  664 (764)
T KOG1063|consen  585 RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFS  664 (764)
T ss_pred             cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccC
Confidence            9999999999999998754321    3346789999999999999999999999999999999887  443   345667


Q ss_pred             CceEEEEECCC-----CceEEEEEecCCeEEEeecc
Q 002564          599 VSITALSLSPN-----MDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       599 ~~v~~l~~spd-----g~~lat~~~d~~~i~lW~~~  629 (907)
                      .+|+.++|.|-     +..++.|-..| -|++|..+
T Consensus       665 ~aVTAv~~~~~~~~e~~~~vavGle~G-eI~l~~~~  699 (764)
T KOG1063|consen  665 LAVTAVAYLPVDHNEKGDVVAVGLEKG-EIVLWRRK  699 (764)
T ss_pred             CceeeEEeeccccccccceEEEEeccc-EEEEEecc
Confidence            78999999872     23566666666 59999854

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.1e-39  Score=299.63  Aligned_cols=289  Identities=19%  Similarity=0.352  Sum_probs=267.8

Q ss_pred             EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEE
Q 002564          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (907)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~  296 (907)
                      +.+++ |.+.|.++.|++|++ .+++++.||.+.|||.-+....+.++ -....|..++|+|.|+++++|+-|+...||+
T Consensus        49 r~LkG-H~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   49 RTLKG-HLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEecc-cccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            44555 489999999999999 89999999999999999988888887 6788999999999999999999999999999


Q ss_pred             ccCC--CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccC
Q 002564          297 FDTT--DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (907)
Q Consensus       297 ~~~~--~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (907)
                      +...  ++..+..+.+.+|.+.+.++.|.+| .+|++++.|.+..+||+++++....+.                     
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~---------------------  183 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFH---------------------  183 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEec---------------------
Confidence            9876  5556677889999999999999985 589999999999999999887766543                     


Q ss_pred             ceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 002564          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNL  453 (907)
Q Consensus       375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~i~d~  453 (907)
                                                                     +|.+.|.+++++| +++.+++|+.|+..++||+
T Consensus       184 -----------------------------------------------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~  216 (343)
T KOG0286|consen  184 -----------------------------------------------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV  216 (343)
T ss_pred             -----------------------------------------------CCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence                                                           5779999999999 9999999999999999999


Q ss_pred             CCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC---cceeEEEEeeCCCEE
Q 002564          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLL  530 (907)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~l  530 (907)
                      +.+...+.|.        +|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+.+.   .+|++++||..|++|
T Consensus       217 R~~~c~qtF~--------ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL  288 (343)
T KOG0286|consen  217 RSGQCVQTFE--------GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL  288 (343)
T ss_pred             cCcceeEeec--------ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE
Confidence            9999999996        99999999999999999999999999999999999999888765   799999999999999


Q ss_pred             EEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564          531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (907)
Q Consensus       531 a~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd  585 (907)
                      .+|..|.++.+||.-.++.+..+.||.++|+++..+|||.-++|||.|.++|||.
T Consensus       289 fagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  289 FAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999999999999999999999999999999999999999999999994

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-38  Score=319.80  Aligned_cols=470  Identities=17%  Similarity=0.219  Sum_probs=339.1

Q ss_pred             EcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEE
Q 002564           89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (907)
Q Consensus        89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iw  166 (907)
                      +..|+.+|.++.+  -..+++++-.+|.|.|||.++...    ++.+......+.++.|-+..  +.+++|+.|..|++|
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm----VksfeV~~~PvRa~kfiaRk--nWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM----VKSFEVSEVPVRAAKFIARK--NWIVTGSDDMQIRVF   82 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee----eeeeeecccchhhheeeecc--ceEEEecCCceEEEE
Confidence            5668899999885  678999999999999999999988    89999999999999999888  899999999999999


Q ss_pred             ecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc-eEEEEeecCCCCEEEEEEecCCCCEEEEEeC
Q 002564          167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGAS  245 (907)
Q Consensus       167 d~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~  245 (907)
                      |..+++.++.|..|..-|+|++.+|...++++++.|-.|++||.+.+- +.++|.+| ...|.+++|.|.....+|+++-
T Consensus        83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEEEEEecCCCccceeeeec
Confidence            999999999999999999999999999999999999999999998664 55666655 8899999999988879999999


Q ss_pred             CCcEEEEECCCceeeeeeecccccCeEEEEEecCC--CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE--PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (907)
Q Consensus       246 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (907)
                      |++|+||.+.+..+..++. +|...|+++.|.+.|  ++|++|+.|.++++||+.+.    .+++++.||...|..+.|+
T Consensus       162 DrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fh  236 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK----SCVQTLEGHTNNVSFVFFH  236 (794)
T ss_pred             cccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchH----HHHHHhhcccccceEEEec
Confidence            9999999999999999999 999999999999855  79999999999999999876    6889999999999999999


Q ss_pred             cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (907)
Q Consensus       324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  403 (907)
                      |.-..+++|+.||++|+|+..+-+....+..+                 +..+-++...     .....++.+.+.+.+.
T Consensus       237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g-----------------leRvW~I~~~-----k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNYG-----------------LERVWCIAAH-----KGDGKIAVGFDEGSVT  294 (794)
T ss_pred             CCCcEEEEecCCccEEEecCcceehhhhhhcC-----------------CceEEEEeec-----CCCCeEEEeccCCcEE
Confidence            99999999999999999998766554443221                 0001000000     0001112222211111


Q ss_pred             EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccc-----ccccCcCCcEE
Q 002564          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-----RSNYAHNGEVV  478 (907)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~h~~~v~  478 (907)
                      +             ..    ......+.+++.|+.+-+....  |.--++.+-...........     ..+-...-...
T Consensus       295 v-------------~l----greeP~vsMd~~gKIiwa~~~e--i~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq  355 (794)
T KOG0276|consen  295 V-------------KL----GREEPAVSMDSNGKIIWAVHSE--IQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQ  355 (794)
T ss_pred             E-------------Ec----cCCCCceeecCCccEEEEcCce--eeeeeceeccCcccccCCccccchhhhccccccchH
Confidence            1             00    0112233444445444332221  11111111100000000000     00001111233


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCC
Q 002564          479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD  558 (907)
Q Consensus       479 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~  558 (907)
                      .++.+|+|+++++|+ ||.-.||..-.    .+-+.-+.-....|++|.+..|+-..++.|+++  ++.+..+.+.....
T Consensus       356 ~L~hsPNGrfV~Vcg-dGEyiIyTala----~RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~  428 (794)
T KOG0276|consen  356 TLAHSPNGRFVVVCG-DGEYIIYTALA----LRNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS  428 (794)
T ss_pred             HhccCCCCcEEEEec-CccEEEEEeee----hhhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc
Confidence            567789998777666 68888876221    111222566778999998989998889999998  56666655542221


Q ss_pred             CeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEee
Q 002564          559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       559 ~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~  627 (907)
                          ..+--.|.+|... .++.+++||..++++++.+...  ...+.|+.+|.+++.++.+.  .++..
T Consensus       429 ----~e~i~gg~Llg~~-ss~~~~fydW~~~~lVrrI~v~--~k~v~w~d~g~lVai~~d~S--fyil~  488 (794)
T KOG0276|consen  429 ----AEGIFGGPLLGVR-SSDFLCFYDWESGELVRRIEVT--SKHVYWSDNGELVAIAGDDS--FYILK  488 (794)
T ss_pred             ----eeeecCCceEEEE-eCCeEEEEEcccceEEEEEeec--cceeEEecCCCEEEEEecCc--eeEEE
Confidence                1111234445544 5567999999999999988653  45799999999999999886  44443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=8e-39  Score=307.50  Aligned_cols=341  Identities=21%  Similarity=0.294  Sum_probs=300.6

Q ss_pred             eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEE
Q 002564          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (907)
Q Consensus       172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i  251 (907)
                      .-+.+|..|...|.+++.+|+.+++++|+.|..-.+|++.+++....+..| +..|+++.|+.||. +||+|+.+|.|+|
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgH-KDSVt~~~Fshdgt-lLATGdmsG~v~v  132 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGH-KDSVTCCSFSHDGT-LLATGDMSGKVLV  132 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCC-CCceEEEEEccCce-EEEecCCCccEEE
Confidence            456788999999999999999999999999999999999999988888776 89999999999999 9999999999999


Q ss_pred             EECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (907)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s  331 (907)
                      |...++.....+. ..-..+.-+.|+|.+..|+.|+.||.+.+|.+...    ...+.+.||..++++-.|.|+|+.+++
T Consensus       133 ~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~----~~~kv~~Gh~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  133 FKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----ALCKVMSGHNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             EEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc----ceeeEecCCCCCcccccccCCCceEEE
Confidence            9999999888886 56778999999999999999999999999988765    456778899999999999999999999


Q ss_pred             EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (907)
Q Consensus       332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~  411 (907)
                      +..||+|++|+..++++...+.+.                                                        
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~--------------------------------------------------------  231 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQA--------------------------------------------------------  231 (399)
T ss_pred             EecCceEEEEecCCCceeEEeccc--------------------------------------------------------
Confidence            999999999999988766655431                                                        


Q ss_pred             ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcC---CCCE
Q 002564          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS---TNTL  488 (907)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~  488 (907)
                                 .....+++.++..+..++.|..++.+++.+..+|+.+.......+.....+...+.++.+.|   .-.+
T Consensus       232 -----------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL  300 (399)
T KOG0296|consen  232 -----------EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPL  300 (399)
T ss_pred             -----------ccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccch
Confidence                       12456777888888889999999999988888888877765322223335555555555544   5578


Q ss_pred             EEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCC
Q 002564          489 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (907)
Q Consensus       489 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd  568 (907)
                      .++|+.||+|.|||+...+++....+..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||...|.+++.+|+
T Consensus       301 ~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~  379 (399)
T KOG0296|consen  301 AACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ  379 (399)
T ss_pred             hhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence            8999999999999999999999999999999999998 889999999999999999999999999999999999999999


Q ss_pred             CcEEEEEeCCCcEEEEEcC
Q 002564          569 GKWLLSSGMDGSLRIWDVI  587 (907)
Q Consensus       569 g~~l~s~s~Dg~I~vwd~~  587 (907)
                      +++++|+|.|++.+||+++
T Consensus       380 ~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  380 KRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CcEEEEecCCCeEEEEecC
Confidence            9999999999999999875

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=5.3e-38  Score=324.73  Aligned_cols=486  Identities=16%  Similarity=0.235  Sum_probs=365.0

Q ss_pred             cCCeEEEEEEeCC--eEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEE-cCe----EEEEeCCeeEEE-Ecccccc
Q 002564           24 LGTENFVTVSVGK--AFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNH----IAVVKRAHQVAT-WSRHSAK   95 (907)
Q Consensus        24 ~~~~~~~~~~~~~--~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~-g~~----I~vw~~~~~~~~-~~~h~~~   95 (907)
                      +.++|++++-.|+  +++||++..-.++..+..|.-.++|+||+|.+.|+.+ |.+    |-+|+....+.. -..-...
T Consensus        88 ~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~  167 (1080)
T KOG1408|consen   88 QNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSV  167 (1080)
T ss_pred             CCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccccccee
Confidence            7899999988654  5999999998888888899999999999999999987 444    778875443332 3344567


Q ss_pred             eEEEEe--eCCEEEEEecCCcEEEEecCCCCccccce---------eeEec--------CCC--cccEEEEc--------
Q 002564           96 VNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV---------GHVKL--------DDK--FTPTCIMH--------  146 (907)
Q Consensus        96 V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~---------~~~~~--------~~~--~~~~~~~~--------  146 (907)
                      |.+++|  +|.|+++.+ ...|++|.++.+.....++         ..+..        ..+  ...+.++.        
T Consensus       168 Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF  246 (1080)
T KOG1408|consen  168 VSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF  246 (1080)
T ss_pred             EEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
Confidence            788887  799999998 7899999998776322111         00000        000  00111111        


Q ss_pred             ---------------------CCCCCCEEEEEecCCcEEEEecCCCeEEEEEcC-C-----------------------C
Q 002564          147 ---------------------PDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-W-----------------------G  181 (907)
Q Consensus       147 ---------------------p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-h-----------------------~  181 (907)
                                           -+.  ++|++|+.+|.|+++|..+..-+.++.. |                       -
T Consensus       247 SsRRLLDKWVqcRTTnAnCIcVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f  324 (1080)
T KOG1408|consen  247 SSRRLLDKWVQCRTTNANCICVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF  324 (1080)
T ss_pred             chhhhhhhhhhhhccccceeeeec--ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence                                 123  6799999999999999877554433321 1                       0


Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEE---EEeecCCCCEEEEEEec------------CCCCEEEEEeCC
Q 002564          182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV---TFTHSMRGAVTALAFSS------------DGQPLLASGASS  246 (907)
Q Consensus       182 ~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~---~~~~~~~~~v~~l~fs~------------dg~~~l~sg~~d  246 (907)
                      ....++.|+|..+.|.+...|..+.|||++.-+.+.   .+.. |...|+.+.--|            .+  .+++++.|
T Consensus       325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly-HS~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCSsD  401 (1080)
T KOG1408|consen  325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY-HSACIWDVENLPCNVHSPTAACLPRG--CFTTCSSD  401 (1080)
T ss_pred             CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeee-ccceeeeeccccccccCcccccCCcc--ceeEecCC
Confidence            123568899999999999999999999998654332   2222 245666665444            23  48899999


Q ss_pred             CcEEEEECCCceeeeeee------------------------------------cccccCeEEEEEecCCCEEEEEcCCC
Q 002564          247 GVISIWNLEKRRLQSVIR------------------------------------EAHDNAIISLHFFANEPVLMSASADN  290 (907)
Q Consensus       247 g~I~iwd~~~~~~~~~~~------------------------------------~~h~~~V~~l~~~~~~~~l~s~~~d~  290 (907)
                      ++|++||++.+..-..+.                                    ......+.+++.+|+|++|++|..-|
T Consensus       402 ~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~G  481 (1080)
T KOG1408|consen  402 GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGG  481 (1080)
T ss_pred             CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccC
Confidence            999999997631111100                                    01235789999999999999999999


Q ss_pred             cEEEEEccCCCCCcceeEeccCCCCCCeEEEEec---CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccch
Q 002564          291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA---NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (907)
Q Consensus       291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~---~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  367 (907)
                      .+++|++...    +.......|...|.|+.|+.   ..++|++++.|+.|.++|+...-.                   
T Consensus       482 nlrVy~Lq~l----~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~-------------------  538 (1080)
T KOG1408|consen  482 NLRVYDLQEL----EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD-------------------  538 (1080)
T ss_pred             ceEEEEehhh----hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-------------------
Confidence            9999988755    45566779999999999986   457899999999999999854321                   


Q ss_pred             hhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC--CEEEEEeCC
Q 002564          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAG  445 (907)
Q Consensus       368 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~d  445 (907)
                                                                      ......+|...|+++.|...|  ..+++++.|
T Consensus       539 ------------------------------------------------l~qtld~HSssITsvKFa~~gln~~MiscGAD  570 (1080)
T KOG1408|consen  539 ------------------------------------------------LVQTLDGHSSSITSVKFACNGLNRKMISCGAD  570 (1080)
T ss_pred             ------------------------------------------------hhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence                                                            122334677899999998888  678888888


Q ss_pred             CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC----cceeEE
Q 002564          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKI  521 (907)
Q Consensus       446 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~i~~~  521 (907)
                      ..|.+-..+.......+...   ........+..++++|..+++++++.|..|+|||+.+++..+.++..    +....+
T Consensus       571 ksimFr~~qk~~~g~~f~r~---t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv  647 (1080)
T KOG1408|consen  571 KSIMFRVNQKASSGRLFPRH---TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV  647 (1080)
T ss_pred             hhhheehhccccCceecccc---ccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence            87755443322222222200   00122457899999999999999999999999999999999999754    678889


Q ss_pred             EEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCC
Q 002564          522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA  589 (907)
Q Consensus       522 ~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~  589 (907)
                      ...|.|.|+|+.+.|.++.++|..+++++.+..||...|+.+.|++|-+.|++++.||.|.||.++..
T Consensus       648 ~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  648 ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             EECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999753

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.8e-38  Score=293.80  Aligned_cols=290  Identities=18%  Similarity=0.318  Sum_probs=262.9

Q ss_pred             eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (907)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd  209 (907)
                      -+.++.|..-+..+-|+++.  ++|++++.||.+.|||.-+...++.++-....|..++|+|.|+++|.|+-|+...||+
T Consensus        48 rr~LkGH~~Ki~~~~ws~Ds--r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDS--RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEEecccccceeeeEecCCc--CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            36677888888888899999  8999999999999999999999999998899999999999999999999999999999


Q ss_pred             ccCC--c---eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEec-CCCEE
Q 002564          210 VRYD--E---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL  283 (907)
Q Consensus       210 ~~~~--~---~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l  283 (907)
                      +.+.  +   .+......|.+.+.|+.|.+|+.  |++++.|.+..+||+++++.+..+. +|.+.|.++.++| +++.+
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntF  202 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTF  202 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeE
Confidence            9865  2   23333344589999999999875  8899999999999999999999999 9999999999999 99999


Q ss_pred             EEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (907)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  363 (907)
                      ++|+-|+..++||++.+    ...+.+.+|...|++++|.|+|.-+++|+.|++.|+||++.+++...++..        
T Consensus       203 vSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~--------  270 (343)
T KOG0286|consen  203 VSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD--------  270 (343)
T ss_pred             EecccccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC--------
Confidence            99999999999998866    678899999999999999999999999999999999999988776654321        


Q ss_pred             ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (907)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (907)
                                                                                ....+|++++||..|++|++|+
T Consensus       271 ----------------------------------------------------------~~~~gitSv~FS~SGRlLfagy  292 (343)
T KOG0286|consen  271 ----------------------------------------------------------SIICGITSVAFSKSGRLLFAGY  292 (343)
T ss_pred             ----------------------------------------------------------cccCCceeEEEcccccEEEeee
Confidence                                                                      1237899999999999999999


Q ss_pred             CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (907)
Q Consensus       444 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  502 (907)
                      .|.++.+||.-.++....+.        +|...|+++..+|||..+++|+.|.+++||.
T Consensus       293 ~d~~c~vWDtlk~e~vg~L~--------GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  293 DDFTCNVWDTLKGERVGVLA--------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cCCceeEeeccccceEEEee--------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999998885        9999999999999999999999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.7e-37  Score=282.62  Aligned_cols=291  Identities=14%  Similarity=0.319  Sum_probs=255.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCC
Q 002564          236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (907)
Q Consensus       236 g~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (907)
                      ..-+|++++.|.+|++|...+|.+..+++ ..++.|+.+...|+++.|++++. ..||+||+++.+.  ..+.++.+|..
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np--~Pv~t~e~h~k   84 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP--NPVATFEGHTK   84 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC--CceeEEeccCC
Confidence            33489999999999999999999999998 56789999999999999999884 6799999987654  46788899999


Q ss_pred             CCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEE
Q 002564          316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  395 (907)
Q Consensus       316 ~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  395 (907)
                      .|+++.|..+|+.+++|+.||+++|||++.....+.+                                           
T Consensus        85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-------------------------------------------  121 (311)
T KOG0315|consen   85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-------------------------------------------  121 (311)
T ss_pred             ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-------------------------------------------
Confidence            9999999999999999999999999999875544433                                           


Q ss_pred             eeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCC
Q 002564          396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  475 (907)
Q Consensus       396 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  475 (907)
                                                .+..+|+++.+.|+...|++|..+|.|++||+........+.       +....
T Consensus       122 --------------------------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-------Pe~~~  168 (311)
T KOG0315|consen  122 --------------------------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-------PEDDT  168 (311)
T ss_pred             --------------------------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-------CCCCc
Confidence                                      234889999999999999999999999999999887766664       35567


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCCCce------eeeeec-CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-
Q 002564          476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL------KSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-  547 (907)
Q Consensus       476 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~-~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-  547 (907)
                      .|.++.+.|+|.+++.+...|...+|++-+...      +..++. ...+..+.+|||+++||+++.|.+++||+.++. 
T Consensus       169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~  248 (311)
T KOG0315|consen  169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF  248 (311)
T ss_pred             ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence            899999999999999999999999999877543      333333 378999999999999999999999999999988 


Q ss_pred             eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCC-ceEEEEE
Q 002564          548 RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSL  606 (907)
Q Consensus       548 ~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-~v~~l~~  606 (907)
                      +....+.+|...+.+.+||.||+||+||+.|+++++||+..++.++.+.+|. +..+++.
T Consensus       249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence            7778899999999999999999999999999999999999999999988765 4566654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-37  Score=285.76  Aligned_cols=299  Identities=18%  Similarity=0.272  Sum_probs=254.6

Q ss_pred             EEEcccccceEEEEe---eCCEEEEEecCCcEEEEecCCCCc-cccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCc
Q 002564           87 ATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEE-NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS  162 (907)
Q Consensus        87 ~~~~~h~~~V~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~  162 (907)
                      .++++|.+.|+.++.   +.+.+++++.|.++.+|++..... ...+++.+.+|..++..+++++++  ++.++++.|++
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg--~~alS~swD~~   86 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG--NFALSASWDGT   86 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC--ceEEeccccce
Confidence            349999999999995   478999999999999999977643 234578899999999999999999  99999999999


Q ss_pred             EEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecC-CCCEEEEEEecCC-CCEE
Q 002564          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDG-QPLL  240 (907)
Q Consensus       163 i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~dg-~~~l  240 (907)
                      +++||+.+|+..+.|.+|...|.+++|+||.+.+++|+.|.+|++||.. +.+..++..+. .+.|+|+.|+|+. .+++
T Consensus        87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~I  165 (315)
T KOG0279|consen   87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPII  165 (315)
T ss_pred             EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence            9999999999999999999999999999999999999999999999987 55555555443 7899999999984 5599


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEE
Q 002564          241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (907)
Q Consensus       241 ~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (907)
                      ++++.|++|++||+++.+....+. +|.+.++.++++|||.++++|+.||.+.+||++...    .+..+ +|...|.++
T Consensus       166 vs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k----~lysl-~a~~~v~sl  239 (315)
T KOG0279|consen  166 VSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK----NLYSL-EAFDIVNSL  239 (315)
T ss_pred             EEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCCc----eeEec-cCCCeEeeE
Confidence            999999999999999999999998 999999999999999999999999999999998764    34443 788999999


Q ss_pred             EEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCc
Q 002564          321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (907)
Q Consensus       321 ~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  400 (907)
                      +|+|+.- .+.+..+..|+|||+.+...+.++.......                                         
T Consensus       240 ~fspnry-wL~~at~~sIkIwdl~~~~~v~~l~~d~~g~-----------------------------------------  277 (315)
T KOG0279|consen  240 CFSPNRY-WLCAATATSIKIWDLESKAVVEELKLDGIGP-----------------------------------------  277 (315)
T ss_pred             EecCCce-eEeeccCCceEEEeccchhhhhhcccccccc-----------------------------------------
Confidence            9999864 4455556669999999888777654311000                                         


Q ss_pred             eEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 002564          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (907)
Q Consensus       401 ~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~  454 (907)
                                        ..........+++|+++|..|+.|+.|+.|++|.+.
T Consensus       278 ------------------s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  278 ------------------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ------------------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence                              000112456788999999999999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.5e-37  Score=306.42  Aligned_cols=325  Identities=22%  Similarity=0.367  Sum_probs=275.3

Q ss_pred             cCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCC--c--eEEEEe---------ecCCCCEEEEEEecCCCCEEEEE
Q 002564          178 KGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYD--E--ELVTFT---------HSMRGAVTALAFSSDGQPLLASG  243 (907)
Q Consensus       178 ~~h~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~--~--~~~~~~---------~~~~~~v~~l~fs~dg~~~l~sg  243 (907)
                      ..|..+|.+++|+|-.. .+++|+.|...++|++...  .  ....++         ......|++++|+.+|. +||+|
T Consensus       175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-~LatG  253 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT-LLATG  253 (524)
T ss_pred             ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC-eEEEe
Confidence            34999999999999877 9999999999999999741  1  111111         11235799999999999 99999


Q ss_pred             eCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564          244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (907)
Q Consensus       244 ~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (907)
                      +.||.+++|+. .|.++.++. .|.++|.++.|+..|.+|++++.|+++.+||..++    .....+.-|..+-..+.|-
T Consensus       254 ~~~G~~riw~~-~G~l~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g----~~~q~f~~~s~~~lDVdW~  327 (524)
T KOG0273|consen  254 SEDGEARIWNK-DGNLISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG----TVKQQFEFHSAPALDVDWQ  327 (524)
T ss_pred             ecCcEEEEEec-Cchhhhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc----eEEEeeeeccCCccceEEe
Confidence            99999999995 677777777 89999999999999999999999999999987655    3455556677776777776


Q ss_pred             cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (907)
Q Consensus       324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  403 (907)
                      .+ ..+++++.|+.|+++.+.                                                           
T Consensus       328 ~~-~~F~ts~td~~i~V~kv~-----------------------------------------------------------  347 (524)
T KOG0273|consen  328 SN-DEFATSSTDGCIHVCKVG-----------------------------------------------------------  347 (524)
T ss_pred             cC-ceEeecCCCceEEEEEec-----------------------------------------------------------
Confidence            44 356777777776666543                                                           


Q ss_pred             EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEc
Q 002564          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  483 (907)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  483 (907)
                                                                         ...+..++        .+|.+.|.++.|+
T Consensus       348 ---------------------------------------------------~~~P~~t~--------~GH~g~V~alk~n  368 (524)
T KOG0273|consen  348 ---------------------------------------------------EDRPVKTF--------IGHHGEVNALKWN  368 (524)
T ss_pred             ---------------------------------------------------CCCcceee--------ecccCceEEEEEC
Confidence                                                               22333334        3899999999999


Q ss_pred             CCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCC---------CEEEEEeCCCeEEEEEcccceeEEEe
Q 002564          484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN---------GLLATVADDLVIRLFDVVALRMVRKF  553 (907)
Q Consensus       484 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~---------~~la~~~~dg~I~v~d~~~~~~~~~~  553 (907)
                      |.|.+|++++.|+++++|+.........+..+ ..|..+.|+|.|         ..+++++.|++|++||+..+.++.+|
T Consensus       369 ~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f  448 (524)
T KOG0273|consen  369 PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL  448 (524)
T ss_pred             CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee
Confidence            99999999999999999998888777777655 689999999865         48999999999999999999999999


Q ss_pred             ecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       554 ~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                      ..|..+|.+++|||+|+|+|+|+.||.|.+|+++++++++.+.....|..++|+.+|++|..+-.|+ .+++-|++
T Consensus       449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~-~vcvldlr  523 (524)
T KOG0273|consen  449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDG-SVCVLDLR  523 (524)
T ss_pred             ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCC-CceEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999999998 58887764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.6e-37  Score=278.41  Aligned_cols=295  Identities=17%  Similarity=0.255  Sum_probs=254.0

Q ss_pred             CEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCe
Q 002564          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAI  271 (907)
Q Consensus       194 ~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~h~~~V  271 (907)
                      -+|++++.|.+|++|...+|.+..++.+. .+.|..+...||++ .||+++ ...|++||++++.  ++.++. +|...|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~-dsqVNrLeiTpdk~-~LAaa~-~qhvRlyD~~S~np~Pv~t~e-~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHP-DSQVNRLEITPDKK-DLAAAG-NQHVRLYDLNSNNPNPVATFE-GHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecC-ccceeeEEEcCCcc-hhhhcc-CCeeEEEEccCCCCCceeEEe-ccCCce
Confidence            37899999999999999999999999876 88999999999999 777776 4689999999885  577777 999999


Q ss_pred             EEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceeccccee
Q 002564          272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE  351 (907)
Q Consensus       272 ~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~  351 (907)
                      +++.|..+|+.+++||+||+++|||++...    +.+. ..|..+|+++..+|+...|++|.++|.|++||+.......+
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~----~qR~-~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~  161 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLS----CQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE  161 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCcc----cchh-ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence            999999999999999999999999998742    2232 36779999999999999999999999999999987765554


Q ss_pred             echhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEE
Q 002564          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (907)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  431 (907)
                      +..                                                                   .....+.+++
T Consensus       162 liP-------------------------------------------------------------------e~~~~i~sl~  174 (311)
T KOG0315|consen  162 LIP-------------------------------------------------------------------EDDTSIQSLT  174 (311)
T ss_pred             cCC-------------------------------------------------------------------CCCcceeeEE
Confidence            321                                                                   2237899999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC-ceee
Q 002564          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKS  510 (907)
Q Consensus       432 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~  510 (907)
                      +.|||.+++.+...|+.++|++-.......+..  ....++|.+.+....+||++++|++++.|.+++||+.++. +...
T Consensus       175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P--~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~  252 (311)
T KOG0315|consen  175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELEP--VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL  252 (311)
T ss_pred             EcCCCcEEEEecCCccEEEEEccCCCccccceE--hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence            999999999999999999999987654443321  1224689999999999999999999999999999999987 4444


Q ss_pred             eeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEEC
Q 002564          511 RWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS  566 (907)
Q Consensus       511 ~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fs  566 (907)
                      .++.+ ..+..++||.||.+|++|+.|+.+++||+..++.++.+.||.....+++..
T Consensus       253 ~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  253 VLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            44444 689999999999999999999999999999999999999999888777753

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.1e-34  Score=289.57  Aligned_cols=517  Identities=16%  Similarity=0.194  Sum_probs=386.2

Q ss_pred             eEeecCCcceeEEEcCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe-----------EE
Q 002564           10 IGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH-----------IA   78 (907)
Q Consensus        10 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~-----------I~   78 (907)
                      .||-.-.+..+++......++.. ......+||.+...+.... +|...|.||+++||...+|+|..           ++
T Consensus        60 ygYRG~dcR~Nly~lptgE~vyf-vA~V~Vl~n~ee~~Qr~y~-GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvr  137 (626)
T KOG2106|consen   60 YGYRGVDCRNNLYLLPTGELVYF-VAAVGVLYNWEERSQRHYL-GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVR  137 (626)
T ss_pred             EeecceeeeceeEEccCccEEEE-eccEEEEEeehhhhccccc-CCCCceEEEeecCCceeeccCcccccCCCcCCCeee
Confidence            34433334445555444444333 3466778888775544443 78999999999999999997532           99


Q ss_pred             EEeCCee--EEEEcccccceEEEEee----CCEEEEEec--CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCC
Q 002564           79 VVKRAHQ--VATWSRHSAKVNLLLLF----GEHILSIDI--DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTY  150 (907)
Q Consensus        79 vw~~~~~--~~~~~~h~~~V~~l~~~----g~~l~s~~~--dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  150 (907)
                      +||.-+.  +..+..-...|++++|.    |..|+..+.  +..+.|||...+..    ...++.....+..+.|||...
T Consensus       138 iWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~----~~~vk~sne~v~~a~FHPtd~  213 (626)
T KOG2106|consen  138 IWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK----LGPVKTSNEVVFLATFHPTDP  213 (626)
T ss_pred             ecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhc----cCcceeccceEEEEEeccCCC
Confidence            9996543  55566777889999983    777777764  33489999998877    566666677788899999985


Q ss_pred             CCEEEEEecCCcEEEEecCCCeEEEE---EcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCC
Q 002564          151 LNKVIVGSQEGSLQLWNISTKKKLYE---FKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGA  226 (907)
Q Consensus       151 ~~~l~~~s~dg~i~iwd~~~~~~~~~---~~~h-~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~  226 (907)
                       +.++++ ..|.+..|+.+.+....+   |+.+ ..-|.|++|.++|+ +++|..+|.|.||+..+.+..+... .|.+.
T Consensus       214 -nliit~-Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~gg  289 (626)
T KOG2106|consen  214 -NLIITC-GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGG  289 (626)
T ss_pred             -cEEEEe-CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCc
Confidence             555555 557899999988866544   4433 46799999999997 6789999999999998887777777 56899


Q ss_pred             EEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee-cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcc
Q 002564          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR  305 (907)
Q Consensus       227 v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~  305 (907)
                      |.+++...+|.  |++|+.|..|..||- .-+.+.... ....++|..++-...  -|+.|...+.|-.=.++..     
T Consensus       290 v~~L~~lr~Gt--llSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~--di~vGTtrN~iL~Gt~~~~-----  359 (626)
T KOG2106|consen  290 VFSLCMLRDGT--LLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKG--DILVGTTRNFILQGTLENG-----  359 (626)
T ss_pred             eEEEEEecCcc--EeecCccceEEeccc-cccccccccCchhcCCeeEEecCCC--cEEEeeccceEEEeeecCC-----
Confidence            99999999997  566999999999993 332222222 245567777764333  3777776666655444332     


Q ss_pred             eeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccc
Q 002564          306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  385 (907)
Q Consensus       306 ~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  385 (907)
                      ......+|......++.+|+...+++++.|+.+++|+  ..+..                                    
T Consensus       360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~------------------------------------  401 (626)
T KOG2106|consen  360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE------------------------------------  401 (626)
T ss_pred             ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee------------------------------------
Confidence            2333458999999999999999999999999999998  11111                                    


Q ss_pred             cccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecc
Q 002564          386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  465 (907)
Q Consensus       386 ~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~  465 (907)
                                         |+..              -..++.|+.|+|.| .+++|+..|...+.|..+...+..-.  
T Consensus       402 -------------------wt~~--------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~--  445 (626)
T KOG2106|consen  402 -------------------WTKI--------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT--  445 (626)
T ss_pred             -------------------EEEE--------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe--
Confidence                               1111              12778999999999 99999999999999999866655442  


Q ss_pred             ccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCcee-eee-e-cCcceeEEEEeeCCCEEEEEeCCCeEEEE
Q 002564          466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRW-E-VGCSLVKIVYHRVNGLLATVADDLVIRLF  542 (907)
Q Consensus       466 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~-~-~~~~i~~~~~s~~~~~la~~~~dg~I~v~  542 (907)
                            . ..+++++.++|+|.+|+.|+.|+.|++|.++..... ... . ...+|+.+.||+|++++.+-+.|-.|..|
T Consensus       446 ------d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  446 ------D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             ------c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence                  3 789999999999999999999999999998754332 222 1 22899999999999999999999999999


Q ss_pred             EcccceeEE--------------Ee----ecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceee---EeeeCCc-
Q 002564          543 DVVALRMVR--------------KF----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID---AIHVDVS-  600 (907)
Q Consensus       543 d~~~~~~~~--------------~~----~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~---~~~~~~~-  600 (907)
                      ....-+.+.              -|    ..|...|..++-+.+.+.+++|...|.|++|..+--+...   .+.+|+. 
T Consensus       519 ~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~  598 (626)
T KOG2106|consen  519 KPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSH  598 (626)
T ss_pred             ccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccce
Confidence            443221111              11    1355668888889999999999999999999987555443   3444555 


Q ss_pred             eEEEEECCCCceEEEEEecCCeEEEeec
Q 002564          601 ITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       601 v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (907)
                      |++++|.-+...|.+.+.|. +|..|++
T Consensus       599 vt~V~Fl~~d~~li~tg~D~-Si~qW~l  625 (626)
T KOG2106|consen  599 VTNVAFLCKDSHLISTGKDT-SIMQWRL  625 (626)
T ss_pred             eEEEEEeeCCceEEecCCCc-eEEEEEe
Confidence            99999999888888888887 7999985

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=2.3e-35  Score=305.81  Aligned_cols=485  Identities=19%  Similarity=0.264  Sum_probs=355.2

Q ss_pred             eEEEEEc--CeEEEEeCCee-E-EEEcccccceEEEEe--eCC---EEEEEecCCcEEEEecCCCCccccceeeEecCCC
Q 002564           68 YTFAAYG--NHIAVVKRAHQ-V-ATWSRHSAKVNLLLL--FGE---HILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDK  138 (907)
Q Consensus        68 ~~~~a~g--~~I~vw~~~~~-~-~~~~~h~~~V~~l~~--~g~---~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~  138 (907)
                      +..+|+|  ..|.+||..+. + ..+.||.++|+|+.+  ..+   +++||+.||.|++|.+.....  ..+.+++++..
T Consensus        25 ~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~--~~i~~~~g~~~  102 (764)
T KOG1063|consen   25 GGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL--IKIYTIQGHCK  102 (764)
T ss_pred             cceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe--EEEEeecCcce
Confidence            4444554  44999998776 3 339999999999996  333   899999999999999984333  22455555322


Q ss_pred             cccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe--EEEEEcCCC--CCEEEEEEcCCCC--EEEEEecCCeEEEEEccC
Q 002564          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFKGWG--SSISSCVSSPALD--VVAVGCSDGKIHVHNVRY  212 (907)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~h~--~~I~~l~~sp~~~--~la~g~~dg~I~iwd~~~  212 (907)
                        ...+++...  ..+.+.+.++.+.+||.+..+  +...+.--.  .--.|+++.|+.+  ++|.|+.+..|.++.-.+
T Consensus       103 --~~~cv~a~~--~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~  178 (764)
T KOG1063|consen  103 --ECVCVVARS--SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSA  178 (764)
T ss_pred             --eEEEEEeee--eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCC
Confidence              233343322  233334689999999985555  333332222  2234566666333  566777888888887665


Q ss_pred             Cc--eEEEEeecCCCCEEEEEEecCC--CCEEEEEeCCCcEEEEECCCce---------------------ee---e---
Q 002564          213 DE--ELVTFTHSMRGAVTALAFSSDG--QPLLASGASSGVISIWNLEKRR---------------------LQ---S---  261 (907)
Q Consensus       213 ~~--~~~~~~~~~~~~v~~l~fs~dg--~~~l~sg~~dg~I~iwd~~~~~---------------------~~---~---  261 (907)
                      ++  .+..+.+| .+.|.+++|...+  ..+||+++.|..|+||.+.-+.                     ..   .   
T Consensus       179 d~f~~v~el~GH-~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~i  257 (764)
T KOG1063|consen  179 DSFARVAELEGH-TDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRI  257 (764)
T ss_pred             cceeEEEEeecc-chhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEE
Confidence            53  44555554 8999999998654  4688999999999999864322                     01   0   


Q ss_pred             ---eeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEe---ccCCCCCCeEEEEecCCCEEEEEeCC
Q 002564          262 ---VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF---RSGHSAPPLCIRFYANGRHILSAGQD  335 (907)
Q Consensus       262 ---~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~---~~~h~~~v~~i~~~~~g~~l~s~~~d  335 (907)
                         .+..+|...|.++.|+|.+..|++++.|.++.+|.-+..++.+.....   ..|.........|+|++..+++-+.-
T Consensus       258 s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~  337 (764)
T KOG1063|consen  258 SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT  337 (764)
T ss_pred             ehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc
Confidence               111489999999999999999999999999999988777665544332   23445678899999999999999999


Q ss_pred             CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecce
Q 002564          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (907)
Q Consensus       336 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~  415 (907)
                      |..++|......                                                        .|..        
T Consensus       338 Gg~hlWkt~d~~--------------------------------------------------------~w~~--------  353 (764)
T KOG1063|consen  338 GGFHLWKTKDKT--------------------------------------------------------FWTQ--------  353 (764)
T ss_pred             CcEEEEeccCcc--------------------------------------------------------ceee--------
Confidence            999999822111                                                        1111        


Q ss_pred             eeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc-ceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec
Q 002564          416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY  494 (907)
Q Consensus       416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  494 (907)
                       .....+|...|+.++|+|.|.|+++.+.|-+-++|-.-..+. -..+     ...+-|...++|+++-+....+++|..
T Consensus       354 -~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi-----aRPQiHGyDl~c~~~vn~~~~FVSgAd  427 (764)
T KOG1063|consen  354 -EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI-----ARPQIHGYDLTCLSFVNEDLQFVSGAD  427 (764)
T ss_pred             -ccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee-----cccccccccceeeehccCCceeeeccc
Confidence             122346779999999999999999999999999987652111 1111     123478889999999987778889999


Q ss_pred             CCeEEEEECCCC--------------------------------ce----------------------------------
Q 002564          495 HGDIKVWDFKGR--------------------------------DL----------------------------------  508 (907)
Q Consensus       495 dg~i~iwd~~~~--------------------------------~~----------------------------------  508 (907)
                      +..+|+|+....                                +.                                  
T Consensus       428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed  507 (764)
T KOG1063|consen  428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED  507 (764)
T ss_pred             ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence            999999975321                                00                                  


Q ss_pred             -----------eeeeecCcceeEEEEeeCCCEEEEEeCCC-----eEEEEEcccceeEEEeecCCCCeeeEEECCCCcEE
Q 002564          509 -----------KSRWEVGCSLVKIVYHRVNGLLATVADDL-----VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL  572 (907)
Q Consensus       509 -----------~~~~~~~~~i~~~~~s~~~~~la~~~~dg-----~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l  572 (907)
                                 .+.+.|...|.+++.+|+++++|+++...     .|++|+..++..+..+.+|.-.|+.++|||||++|
T Consensus       508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  508 QLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL  587 (764)
T ss_pred             HHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence                       00111236799999999999999998653     79999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCce----eeEeeeCCc-eEEEEECCCCceEEEEEecCCeEEEeeccc
Q 002564          573 LSSGMDGSLRIWDVILARQ----IDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (907)
Q Consensus       573 ~s~s~Dg~I~vwd~~~~~~----~~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~~~  630 (907)
                      +++|.|+++.+|....+..    .+..+.|.. |.+..|+|++.++||++.|+ .|.+|....
T Consensus       588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK-~VkVW~~~~  649 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK-KVKVWEEPD  649 (764)
T ss_pred             EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc-eEEEEeccC
Confidence            9999999999998854321    223445665 99999999999999999999 699998643

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=9.9e-36  Score=276.18  Aligned_cols=298  Identities=18%  Similarity=0.272  Sum_probs=256.4

Q ss_pred             eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecC-----CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Q 002564          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS-----TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGK  204 (907)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~  204 (907)
                      ..+++.|.+.+...+..+.+. +.+++++.|.++.+|++.     .|.+++.++||...|..++.+++|++.++++.|+.
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~-~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~   86 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNS-DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT   86 (315)
T ss_pred             eeeecCCCceEEEEEeecCCC-ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence            467788899988888888854 889999999999999764     57889999999999999999999999999999999


Q ss_pred             EEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC--CCE
Q 002564          205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPV  282 (907)
Q Consensus       205 I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~  282 (907)
                      +++||+.+++..+.|.+| ...|.+++|++|.+ .+++|+.|.+|.+||.............|.+.|.++.|+|+  .++
T Consensus        87 lrlWDl~~g~~t~~f~GH-~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   87 LRLWDLATGESTRRFVGH-TKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI  164 (315)
T ss_pred             EEEEEecCCcEEEEEEec-CCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence            999999999999999887 77899999999998 89999999999999987666555555445889999999998  789


Q ss_pred             EEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHh
Q 002564          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (907)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  362 (907)
                      +++++.|++|++||++..    ++...+.||++.++.++++|||..+++|+.||.+.+||+..++....+          
T Consensus       165 Ivs~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl----------  230 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL----------  230 (315)
T ss_pred             EEEccCCceEEEEccCCc----chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec----------
Confidence            999999999999998765    566777899999999999999999999999999999999887665443          


Q ss_pred             hccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEE
Q 002564          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  442 (907)
Q Consensus       363 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  442 (907)
                                                                                 ++...|.+++|+|+.-+|+.+
T Consensus       231 -----------------------------------------------------------~a~~~v~sl~fspnrywL~~a  251 (315)
T KOG0279|consen  231 -----------------------------------------------------------EAFDIVNSLCFSPNRYWLCAA  251 (315)
T ss_pred             -----------------------------------------------------------cCCCeEeeEEecCCceeEeec
Confidence                                                                       234789999999998888887


Q ss_pred             eCCCcEEEEeCCCCccceeeecccccc-ccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564          443 TAGGWIERFNLQSGISRGSYLDMSERS-NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       443 ~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  504 (907)
                      +..+ |+|||+.++..+..+....... .........+++|+++|..|+++..|+.|++|.+.
T Consensus       252 t~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  252 TATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            7665 9999999998887775332211 12223456788999999999999999999999864

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=7e-34  Score=300.83  Aligned_cols=542  Identities=16%  Similarity=0.211  Sum_probs=402.3

Q ss_pred             eeeEeecCCcceeEEE-cCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEE-cCeEEEEeCCee
Q 002564            8 KAIGYITSSVPFSVQR-LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNHIAVVKRAHQ   85 (907)
Q Consensus         8 r~~g~v~~~~~~~~~~-~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~-g~~I~vw~~~~~   85 (907)
                      +.++. +...|-.+.. .....++.+..++.|.+|--.+ ....+...|...|.-+...++...... .+.+.||+....
T Consensus        67 ~ll~v-s~~lp~~I~alas~~~~vy~A~g~~i~~~~rgk-~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~  144 (910)
T KOG1539|consen   67 NLLFV-SKPLPDKITALASDKDYVYVASGNKIYAYARGK-HIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSI  144 (910)
T ss_pred             EEEEe-cCCCCCceEEEEecCceEEEecCcEEEEEEccc-eEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccc
Confidence            44443 4445543332 2344555556678888885332 344455567789999888777666555 455999985441


Q ss_pred             -E--E---E-EcccccceEEEE-ee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEE
Q 002564           86 -V--A---T-WSRHSAKVNLLL-LF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVI  155 (907)
Q Consensus        86 -~--~---~-~~~h~~~V~~l~-~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~  155 (907)
                       .  .   + ++.....|+++. |.  =+.++.|+.+|.+++|++.+++.    +.+++.....+.++.-+|.  +..++
T Consensus       145 ~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~----v~~f~~~~s~IT~ieqsPa--LDVVa  218 (910)
T KOG1539|consen  145 QEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKV----VYTFQEFFSRITAIEQSPA--LDVVA  218 (910)
T ss_pred             cccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcE----EEEecccccceeEeccCCc--ceEEE
Confidence             1  1   1 222223388876 43  46788889999999999999999    7887776655544444444  48999


Q ss_pred             EEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEec
Q 002564          156 VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS  234 (907)
Q Consensus       156 ~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~  234 (907)
                      +|..+|+|.++|++.++.+.+|+.-.++|++++|..||+ .+|+|+..|.+.+||++..+.+......|.+.|..+.|.|
T Consensus       219 iG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~  298 (910)
T KOG1539|consen  219 IGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP  298 (910)
T ss_pred             EeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC
Confidence            999999999999999999999997679999999999997 6778888899999999988888888877789999999998


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeEEEEEe-cCCCEEEEEcCCCcEEEEEccCCCCCcceeE-
Q 002564          235 DGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFF-ANEPVLMSASADNSIKMWIFDTTDGDPRLLR-  308 (907)
Q Consensus       235 dg~~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-  308 (907)
                      ... ++++++.|+.+++|=.+++    +.+. .+.||..+..++.|. .++..+.+++.|++.+.+++........+.+ 
T Consensus       299 ~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR-~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~  376 (910)
T KOG1539|consen  299 GEP-VLVTAGADNSLKVWVFDSGDGVPRLLR-SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL  376 (910)
T ss_pred             CCc-eEeeccCCCceeEEEeeCCCCcchhee-eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence            776 9999999999998865544    3333 345999999999998 6888999999999998887643211111110 


Q ss_pred             -------------eccCCCCCCeEEEEec-----CCCEEEEEeCCCCEEEEEceecccce-eechhhhhHHHhhccchhh
Q 002564          309 -------------FRSGHSAPPLCIRFYA-----NGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEE  369 (907)
Q Consensus       309 -------------~~~~h~~~v~~i~~~~-----~g~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~  369 (907)
                                   ...-.-.+|..+++..     ..+.+...-.+...+.|+......-. .+......+          
T Consensus       377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~----------  446 (910)
T KOG1539|consen  377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK----------  446 (910)
T ss_pred             ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc----------
Confidence                         0011123566666654     13455556677889999987655422 221110000          


Q ss_pred             hcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 002564          370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  449 (907)
Q Consensus       370 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~  449 (907)
                        -...+.+...+     .-.+.+..+...+.|.+|+++.+... ..+...+.|..+|+.++...-++.+++++.+|.+.
T Consensus       447 --~~~~~~av~vs-----~CGNF~~IG~S~G~Id~fNmQSGi~r-~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilk  518 (910)
T KOG1539|consen  447 --DDINATAVCVS-----FCGNFVFIGYSKGTIDRFNMQSGIHR-KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILK  518 (910)
T ss_pred             --cCcceEEEEEe-----ccCceEEEeccCCeEEEEEcccCeee-cccccCccccCceeEEEecCCCceEEEccCcceEE
Confidence              00111111111     11345677888999999999987662 33333456789999999999999999999999999


Q ss_pred             EEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeee-cCcceeEEEEeeCCC
Q 002564          450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNG  528 (907)
Q Consensus       450 i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~  528 (907)
                      .||.........+.         -...+.++..+.....++.+..|-.|+++|..+.+.++.+. +...|+.++|||||+
T Consensus       519 fw~f~~k~l~~~l~---------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr  589 (910)
T KOG1539|consen  519 FWDFKKKVLKKSLR---------LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR  589 (910)
T ss_pred             EEecCCcceeeeec---------cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence            99999988777663         45568888888888899999999999999999999999998 558999999999999


Q ss_pred             EEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCC-CcEEEEEcC
Q 002564          529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVI  587 (907)
Q Consensus       529 ~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D-g~I~vwd~~  587 (907)
                      +|++++.|++|++||+.++.++-.+. -..+++++.|||+|.+|||+..| .-|++|.=.
T Consensus       590 WlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  590 WLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             EEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            99999999999999999999988776 56789999999999999999988 569999643

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.8e-33  Score=289.29  Aligned_cols=538  Identities=16%  Similarity=0.179  Sum_probs=393.2

Q ss_pred             CCCcceEEEEEecCeEEEEEcC---eEEEEeCCee---EEEEccc-ccceEEEEee-CCEEEEEecCCcEEEEecCCCCc
Q 002564           54 QLPKKIRALASYRDYTFAAYGN---HIAVVKRAHQ---VATWSRH-SAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEE  125 (907)
Q Consensus        54 ~~~~~I~~la~~~~~~~~a~g~---~I~vw~~~~~---~~~~~~h-~~~V~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~  125 (907)
                      -.|.+|+|||++.+...+|.+.   .|.+|+....   ...+.|+ ...|.+++|. |..|+|.+.+|.|.-||+.+.+.
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce
Confidence            4589999999998876676643   4999985432   2335555 5689999995 99999999999999999999988


Q ss_pred             cccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEecCC
Q 002564          126 NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSDG  203 (907)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~--~~~h~~~I~~l~~sp~~~~la~g~~dg  203 (907)
                          ...+...++.+++++.+|.+  ..+++|+.||.+...++..++..+.  |....++|.++.|+|++..|+.|+.||
T Consensus       103 ----~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg  176 (691)
T KOG2048|consen  103 ----KYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG  176 (691)
T ss_pred             ----eEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence                77888888999999999999  8999999999888888888877664  445578999999999999999999999


Q ss_pred             eEEEEEccCCceEEEEe-------ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEE
Q 002564          204 KIHVHNVRYDEELVTFT-------HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF  276 (907)
Q Consensus       204 ~I~iwd~~~~~~~~~~~-------~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~  276 (907)
                      .|++||..++..++...       .....-|.++.|-.++.  +++|.+.|+|.+||...+.++.... .|.+.|.+++.
T Consensus       177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t--I~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav  253 (691)
T KOG2048|consen  177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST--IASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAV  253 (691)
T ss_pred             eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc--EEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEE
Confidence            99999999998777322       11234578899988875  9999999999999999999999998 99999999999


Q ss_pred             ecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhh
Q 002564          277 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH  356 (907)
Q Consensus       277 ~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  356 (907)
                      .+++..++++|.|+.|..+...+....+.....+..|...+.+++..++  .+++|+.|..+.+-.....+..... +..
T Consensus       254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~-~~~  330 (691)
T KOG2048|consen  254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHR-QKN  330 (691)
T ss_pred             cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhh-ccc
Confidence            9999999999999999999877765556666677899999999999977  8999999999888765542211110 000


Q ss_pred             hhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeecee-----cceeeecCCCCCCceEEEE
Q 002564          357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL-----GEHILRPCPENPTAVKACT  431 (907)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~-----~~~~~~~~~~~~~~v~~~~  431 (907)
                      ..             ...+....        .....+..-.....+.+|.+.....     ..+.+.........+.+.+
T Consensus       331 ~~-------------p~~~~v~~--------a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~a  389 (691)
T KOG2048|consen  331 LF-------------PASDRVSV--------APENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAA  389 (691)
T ss_pred             cc-------------cccceeec--------CccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeec
Confidence            00             00000000        0001111122234444555543311     1333444445568899999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCceee
Q 002564          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS  510 (907)
Q Consensus       432 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~  510 (907)
                      +||+|++++.++-. ..++|.++....+.....   .......-....+.|+-++..++.++ .+..+...++.+.....
T Consensus       390 iSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v---~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~ke  465 (691)
T KOG2048|consen  390 ISPDGNLIAISTVS-RTKIYRLQPDPNVKVINV---DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKE  465 (691)
T ss_pred             cCCCCCEEEEeecc-ceEEEEeccCcceeEEEe---ccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhh
Confidence            99999999998643 467777765332222110   01112334567788888887777777 77788888877654332


Q ss_pred             ee--e---cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECC-CCcEEEEEeCCCcEEEE
Q 002564          511 RW--E---VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIW  584 (907)
Q Consensus       511 ~~--~---~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp-dg~~l~s~s~Dg~I~vw  584 (907)
                      ..  .   .-..|..+..+|+|+++|+.+..|.|.+|++++++.......-...|+.++|+| +-..|+.+..|+.+.-|
T Consensus       466 l~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~ef  545 (691)
T KOG2048|consen  466 LKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEF  545 (691)
T ss_pred             hhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEE
Confidence            22  1   226899999999999999999999999999998876554434558899999996 45678888899999999


Q ss_pred             EcCCCceeeEee------------eCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          585 DVILARQIDAIH------------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       585 d~~~~~~~~~~~------------~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                      |++..++-+...            ...++..+.|+|............ -+++-|..
T Consensus       546 di~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~-w~~~id~~  601 (691)
T KOG2048|consen  546 DIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAH-WSCLIDFS  601 (691)
T ss_pred             ecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCc-EEEEEecC
Confidence            995433222111            123488899988776655555554 36666654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.6e-35  Score=293.65  Aligned_cols=324  Identities=16%  Similarity=0.314  Sum_probs=281.7

Q ss_pred             CCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCC--CeEE--EEEc----------CCCCCEEEEEEcCCCCEEEEEec
Q 002564          136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST--KKKL--YEFK----------GWGSSISSCVSSPALDVVAVGCS  201 (907)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~--~~~~--~~~~----------~h~~~I~~l~~sp~~~~la~g~~  201 (907)
                      |...+..|+|+|... ..+++|+.+-+.++|++..  ....  ..|+          .....|++++|+.+|..||+|+.
T Consensus       177 ~~~~V~~~~WnP~~~-~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  177 HESEVFICAWNPLRD-GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             CCCceEEEecCchhh-hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            777788999999873 3789999999999999864  1111  1111          12468999999999999999999


Q ss_pred             CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC
Q 002564          202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP  281 (907)
Q Consensus       202 dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~  281 (907)
                      ||.++||+.. |..+.++..| +++|.++.|+.+|. ++++++.||++.+||..++.....+. -|..+-..+.|-.+. 
T Consensus       256 ~G~~riw~~~-G~l~~tl~~H-kgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~~~~-  330 (524)
T KOG0273|consen  256 DGEARIWNKD-GNLISTLGQH-KGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDWQSND-  330 (524)
T ss_pred             CcEEEEEecC-chhhhhhhcc-CCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeee-eccCCccceEEecCc-
Confidence            9999999965 7888888776 89999999999999 89999999999999999999998888 788887889997655 


Q ss_pred             EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHH
Q 002564          282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA  361 (907)
Q Consensus       282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  361 (907)
                      .+++++.|+.|+++.++..    +...++.||.++|.++.|.|.|.+|++++.|+++++|+.........+.        
T Consensus       331 ~F~ts~td~~i~V~kv~~~----~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~--------  398 (524)
T KOG0273|consen  331 EFATSSTDGCIHVCKVGED----RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ--------  398 (524)
T ss_pred             eEeecCCCceEEEEEecCC----CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh--------
Confidence            6899999999999988765    5677788999999999999999999999999999999976544332221        


Q ss_pred             hhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC-----
Q 002564          362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-----  436 (907)
Q Consensus       362 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----  436 (907)
                                                                                  .|...|..+.|+|.|     
T Consensus       399 ------------------------------------------------------------~Hskei~t~~wsp~g~v~~n  418 (524)
T KOG0273|consen  399 ------------------------------------------------------------AHSKEIYTIKWSPTGPVTSN  418 (524)
T ss_pred             ------------------------------------------------------------hhccceeeEeecCCCCccCC
Confidence                                                                        344677778888765     


Q ss_pred             ----CEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeee
Q 002564          437 ----NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW  512 (907)
Q Consensus       437 ----~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  512 (907)
                          ..++.++.|++|++||+..+.++..+.        .|..+|.+++|+|+|+++++|+.||.|.+|+.+++++.+.+
T Consensus       419 ~~~~~~l~sas~dstV~lwdv~~gv~i~~f~--------kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  419 PNMNLMLASASFDSTVKLWDVESGVPIHTLM--------KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             CcCCceEEEeecCCeEEEEEccCCceeEeec--------cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence                468999999999999999999999986        89999999999999999999999999999999999999999


Q ss_pred             ecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcc
Q 002564          513 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (907)
Q Consensus       513 ~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~  545 (907)
                      ...+.|..++|+.+|.+|.++..|+.+++.|+.
T Consensus       491 ~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  491 QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999999999999999999999999999999874

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-34  Score=293.94  Aligned_cols=463  Identities=14%  Similarity=0.206  Sum_probs=343.1

Q ss_pred             CCCCcceEEEEEecCeEEEEE---cCeEEEEeCCee--EEEEcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCc
Q 002564           53 PQLPKKIRALASYRDYTFAAY---GNHIAVVKRAHQ--VATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEE  125 (907)
Q Consensus        53 ~~~~~~I~~la~~~~~~~~a~---g~~I~vw~~~~~--~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~  125 (907)
                      ..+...|.++.++|..-++.+   .++|.+|+..+.  ++.+.-..-+|.+..|  -.+|+++|+.|..|+||+..+++.
T Consensus        10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek   89 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK   89 (794)
T ss_pred             hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence            346789999999999766544   677999986554  5567777788888876  478999999999999999999999


Q ss_pred             cccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCC-eEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCC
Q 002564          126 NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDG  203 (907)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~h~~~I~~l~~sp-~~~~la~g~~dg  203 (907)
                          +..++.|...+.+.+.||..  .+++++|.|-+|++||.+.+ .+.++|.||..-|.+++|.| |.+.+|+++-|+
T Consensus        90 ----V~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen   90 ----VKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             ----eEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence                99999999999999999999  79999999999999999754 78999999999999999999 467999999999


Q ss_pred             eEEEEEccCCceEEEEeecCCCCEEEEEEecCC-CCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCE
Q 002564          204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV  282 (907)
Q Consensus       204 ~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg-~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  282 (907)
                      +|+||.+.+..+..++.+| ...|.|+.|-+.| +++|++|+.|.+|+|||.++..++.++. +|...|..+.|+|.-++
T Consensus       164 TVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpi  241 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPI  241 (794)
T ss_pred             cEEEEEcCCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCcE
Confidence            9999999999999999976 7889999998865 4699999999999999999999999999 99999999999999999


Q ss_pred             EEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHh
Q 002564          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (907)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  362 (907)
                      +++|+.||++|+|+-.+    .++...+.-.-..++||+..+.+..++.|..+|.+.+ .+-.+.+...+..        
T Consensus       242 iisgsEDGTvriWhs~T----y~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~--------  308 (794)
T KOG0276|consen  242 IISGSEDGTVRIWNSKT----YKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDS--------  308 (794)
T ss_pred             EEEecCCccEEEecCcc----eehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecC--------
Confidence            99999999999996443    3555666666789999999998888888888886654 3333322222111        


Q ss_pred             hccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeec-ee-cceeeecC----CCCCCceEEEEEcCCC
Q 002564          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF-VL-GEHILRPC----PENPTAVKACTISACG  436 (907)
Q Consensus       363 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~-~~-~~~~~~~~----~~~~~~v~~~~~s~~g  436 (907)
                                         ..      .-+-+.+..-..+.+-.+... .. ....++..    ..-.-....++-+|+|
T Consensus       309 -------------------~g------KIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNG  363 (794)
T KOG0276|consen  309 -------------------NG------KIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNG  363 (794)
T ss_pred             -------------------Cc------cEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCC
Confidence                               00      000001110001111100000 00 00000000    0001223467889999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCc
Q 002564          437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC  516 (907)
Q Consensus       437 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  516 (907)
                      ++++++ .||.-.+|..-.-+             ..+.+.-....|.++....+.--.++.|+++  ++.+....+....
T Consensus       364 rfV~Vc-gdGEyiIyTala~R-------------nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~  427 (794)
T KOG0276|consen  364 RFVVVC-GDGEYIIYTALALR-------------NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDM  427 (794)
T ss_pred             cEEEEe-cCccEEEEEeeehh-------------hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecccccccc
Confidence            988876 56777777632111             1345667788899997777777778889988  6666666665543


Q ss_pred             ceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564          517 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (907)
Q Consensus       517 ~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd  585 (907)
                      ..  -.+ - |..|.....++.+++||.+++++++++.-.   ...+.|+.+|.+++.++.|. -.+..
T Consensus       428 ~~--e~i-~-gg~Llg~~ss~~~~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~S-fyil~  488 (794)
T KOG0276|consen  428 SA--EGI-F-GGPLLGVRSSDFLCFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDS-FYILK  488 (794)
T ss_pred             ce--eee-c-CCceEEEEeCCeEEEEEcccceEEEEEeec---cceeEEecCCCEEEEEecCc-eeEEE
Confidence            31  111 1 344444455678999999999999998743   44679999999988887665 34443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.2e-34  Score=300.56  Aligned_cols=500  Identities=14%  Similarity=0.161  Sum_probs=363.3

Q ss_pred             CCcceEEEEEecCeEEEEEc---CeEEEEe--CCeeEEEEcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccc
Q 002564           55 LPKKIRALASYRDYTFAAYG---NHIAVVK--RAHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENL  127 (907)
Q Consensus        55 ~~~~I~~la~~~~~~~~a~g---~~I~vw~--~~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~  127 (907)
                      ....+..++|+|..-++.++   +.|.+||  .+..+..+.+|.++|..+.|  .+..++||+.|-.|+||+..+.++  
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc--   85 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC--   85 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee--
Confidence            45678999999998777664   4599998  57788889999999999997  689999999999999999999999  


Q ss_pred             cceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Q 002564          128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHV  207 (907)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~i  207 (907)
                        +.++.+|...+.++.||+.-  ..|+++|.|.+|+|||..+++++..+.||...|.|..|+|..+.+++++-|.+|+|
T Consensus        86 --lftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   86 --LFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV  161 (1202)
T ss_pred             --hhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence              77888899999999999987  89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCC----------------------------ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce-
Q 002564          208 HNVRYD----------------------------EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-  258 (907)
Q Consensus       208 wd~~~~----------------------------~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~-  258 (907)
                      ||+..-                            ..+..+..+|...|..++|+|.-. ++++|+.|..|++|.+...+ 
T Consensus       162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa  240 (1202)
T KOG0292|consen  162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA  240 (1202)
T ss_pred             EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccc
Confidence            998511                            122333345678899999999988 99999999999999987654 


Q ss_pred             -eeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC
Q 002564          259 -LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (907)
Q Consensus       259 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~  337 (907)
                       .+.+.+ +|.+.|.++-|+|...++++.|.|++|++||++..+    .+.++....+..+.++-+|..+.++.| .|+-
T Consensus       241 WEvDtcr-gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt----~v~tfrrendRFW~laahP~lNLfAAg-HDsG  314 (1202)
T KOG0292|consen  241 WEVDTCR-GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT----SVQTFRRENDRFWILAAHPELNLFAAG-HDSG  314 (1202)
T ss_pred             eeehhhh-cccCCcceEEecCccceeEecCCCccEEEEeccccc----ceeeeeccCCeEEEEEecCCcceeeee-cCCc
Confidence             355566 999999999999999999999999999999998774    456666667889999999998766655 5666


Q ss_pred             EEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeecee-ccee
Q 002564          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL-GEHI  416 (907)
Q Consensus       338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~-~~~~  416 (907)
                      +.+|.+.......-+..                                    +.+..-. +..++.+|+.+.+- .-..
T Consensus       315 m~VFkleRErpa~~v~~------------------------------------n~LfYvk-d~~i~~~d~~t~~d~~v~~  357 (1202)
T KOG0292|consen  315 MIVFKLERERPAYAVNG------------------------------------NGLFYVK-DRFIRSYDLRTQKDTAVAS  357 (1202)
T ss_pred             eEEEEEcccCceEEEcC------------------------------------CEEEEEc-cceEEeeeccccccceeEe
Confidence            88888775544333222                                    1122222 67788888876322 1222


Q ss_pred             eecCCCCCCceEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec
Q 002564          417 LRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY  494 (907)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  494 (907)
                      ++.......++.++.++|..+.+.+++  .+|.-.++.+........-..   .  .........+-.. .+++.+---.
T Consensus       358 lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~---~--~~k~tG~~a~fva-rNrfavl~k~  431 (1202)
T KOG0292|consen  358 LRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGK---D--VKKGTGEGALFVA-RNRFAVLDKS  431 (1202)
T ss_pred             ccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCch---h--hhcCCCCceEEEE-ecceEEEEec
Confidence            232223346788999999887776664  345666666544321111000   0  0011112222222 2223222223


Q ss_pred             CCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEE
Q 002564          495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  574 (907)
Q Consensus       495 dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s  574 (907)
                      +..+.+=++.+. ..+.+........+-+...|.+|+..  ...|.+||++..+.+..+.  ...|.-+.||+|+.+++-
T Consensus       432 ~~~v~ik~l~N~-vtkkl~~~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAl  506 (1202)
T KOG0292|consen  432 NEQVVIKNLKNK-VTKKLLLPESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVAL  506 (1202)
T ss_pred             CcceEEecccch-hhhcccCcccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhh
Confidence            444545454432 22233333455566666666666543  4579999999988888776  467889999999988876


Q ss_pred             EeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEE
Q 002564          575 SGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH  617 (907)
Q Consensus       575 ~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~  617 (907)
                      -+. .+|.|.+.. -..+..+...-.|.+-+|..+|-+|.+..
T Consensus       507 l~K-h~i~i~~kk-L~l~~sihEtiriksgawde~gVfiYtT~  547 (1202)
T KOG0292|consen  507 LSK-HTITIADKK-LELLCSIHETIRIKSGAWDEDGVFIYTTL  547 (1202)
T ss_pred             ccc-ceEEEEecc-hhheecchheeEeeeceeccCceEEEEeh
Confidence            654 568888743 44555554444577888888887777654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.2e-34  Score=278.86  Aligned_cols=340  Identities=19%  Similarity=0.270  Sum_probs=288.0

Q ss_pred             eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (907)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd  209 (907)
                      +.++..|...+..+..+|+.  +.+++|+.|..-.+|++.+|.....+.+|+..|+++.||.+|.+||+|.-+|.|+||.
T Consensus        57 ~~tF~~H~~svFavsl~P~~--~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNN--NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             eeehhhcCCceEEEEeCCCC--ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            55677788889999999966  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCC
Q 002564          210 VRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (907)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d  289 (907)
                      ..++.....+... -..+.-+.|+|.+. +|+.|+.||.+.+|.+.++...+.+. +|..++++-.|.|+|+.++++..|
T Consensus       135 ~stg~~~~~~~~e-~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGKr~~tgy~d  211 (399)
T KOG0296|consen  135 VSTGGEQWKLDQE-VEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGKRILTGYDD  211 (399)
T ss_pred             cccCceEEEeecc-cCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCceEEEEecC
Confidence            9999998888744 56799999999888 99999999999999999988888888 999999999999999999999999


Q ss_pred             CcEEEEEccCCCCCcceeEecc-CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchh
Q 002564          290 NSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  368 (907)
Q Consensus       290 ~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (907)
                      |+|++|+..+..    .+.... .......++.++..+..++.|+.++.+++-+..+++.........            
T Consensus       212 gti~~Wn~ktg~----p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~------------  275 (399)
T KOG0296|consen  212 GTIIVWNPKTGQ----PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV------------  275 (399)
T ss_pred             ceEEEEecCCCc----eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC------------
Confidence            999999877653    222222 224567788898899999999999999988876655443322100            


Q ss_pred             hhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcE
Q 002564          369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI  448 (907)
Q Consensus       369 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  448 (907)
                                                                   .............|.++.++..=...++|+-||+|
T Consensus       276 ---------------------------------------------~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i  310 (399)
T KOG0296|consen  276 ---------------------------------------------PELKPSQEELDESVESIPSSSKLPLAACGSVDGTI  310 (399)
T ss_pred             ---------------------------------------------ccccccchhhhhhhhhcccccccchhhcccccceE
Confidence                                                         00000000112345555566666788999999999


Q ss_pred             EEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCC
Q 002564          449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN  527 (907)
Q Consensus       449 ~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~  527 (907)
                      .+||+.....+..+         .|...|+.+.|.+ ..+|++++.+|.|+.||.++|+++..+..+ .+|.+++++|+.
T Consensus       311 ~iyD~a~~~~R~~c---------~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~  380 (399)
T KOG0296|consen  311 AIYDLAASTLRHIC---------EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQK  380 (399)
T ss_pred             EEEecccchhheec---------cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCC
Confidence            99999999888877         6999999999999 789999999999999999999999999877 899999999999


Q ss_pred             CEEEEEeCCCeEEEEEcc
Q 002564          528 GLLATVADDLVIRLFDVV  545 (907)
Q Consensus       528 ~~la~~~~dg~I~v~d~~  545 (907)
                      +++++++.|++.+||++.
T Consensus       381 ~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  381 RLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             cEEEEecCCCeEEEEecC
Confidence            999999999999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-35  Score=285.39  Aligned_cols=288  Identities=23%  Similarity=0.386  Sum_probs=258.1

Q ss_pred             EEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEE
Q 002564          216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW  295 (907)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw  295 (907)
                      ...+.+ +..+|+.+-|+|+-. ++++++.|++|++||..++++...++ +|...|..+.|+..|+++++++.|-.+++|
T Consensus       101 ~~~l~g-~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen  101 VQKLAG-HRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAKLW  177 (406)
T ss_pred             hhhhhc-cccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchhhe
Confidence            344444 478999999999987 99999999999999999999999999 999999999999999999999999999999


Q ss_pred             EccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCc
Q 002564          296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  375 (907)
Q Consensus       296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (907)
                      |++..   .++++...+|...|.++.|-|.|.++++++.|.+|+.|++.++-+                           
T Consensus       178 d~~~~---~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c---------------------------  227 (406)
T KOG0295|consen  178 DFDTF---FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC---------------------------  227 (406)
T ss_pred             eHHHH---HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee---------------------------
Confidence            98764   467788889999999999999999999999999988888754432                           


Q ss_pred             eeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 002564          376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  455 (907)
Q Consensus       376 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~  455 (907)
                                                                                                      
T Consensus       228 --------------------------------------------------------------------------------  227 (406)
T KOG0295|consen  228 --------------------------------------------------------------------------------  227 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeC--------
Q 002564          456 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRV--------  526 (907)
Q Consensus       456 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~--------  526 (907)
                         +..+        .+|...|..+..+.||.++++++.|.++++|-+.++++...+..+ .++.+++|.|.        
T Consensus       228 ---v~t~--------~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~  296 (406)
T KOG0295|consen  228 ---VKTF--------PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE  296 (406)
T ss_pred             ---EEec--------cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence               2233        388889999999999999999999999999999999877776544 78888888764        


Q ss_pred             -------CCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCC
Q 002564          527 -------NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV  599 (907)
Q Consensus       527 -------~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~  599 (907)
                             +.++.+++.|++|++||+.++.++.++.||.+.|..++|+|.|+||+++..|+++++||+.++++...+..|.
T Consensus       297 at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~  376 (406)
T KOG0295|consen  297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE  376 (406)
T ss_pred             ccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence                   2589999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             c-eEEEEECCCCceEEEEEecCCeEEEeec
Q 002564          600 S-ITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       600 ~-v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (907)
                      . |+++.|+.+-.+++||+.|. ++++|.-
T Consensus       377 hfvt~lDfh~~~p~VvTGsVdq-t~KvwEc  405 (406)
T KOG0295|consen  377 HFVTSLDFHKTAPYVVTGSVDQ-TVKVWEC  405 (406)
T ss_pred             ceeEEEecCCCCceEEeccccc-eeeeeec
Confidence            6 99999999999999999999 6999974

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=9.3e-34  Score=261.89  Aligned_cols=293  Identities=18%  Similarity=0.300  Sum_probs=236.5

Q ss_pred             eEEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEEccC---CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCC
Q 002564          172 KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRY---DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (907)
Q Consensus       172 ~~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~~---~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg  247 (907)
                      ..++.+++|.+++..++|+|- |..||+|+.|..|++|+...   -.+...+...|+..|.+++|+|.|+ +|++|+.|.
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~   83 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDA   83 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccc
Confidence            356788999999999999998 88999999999999999984   3455556667789999999999999 999999999


Q ss_pred             cEEEEECCCc--eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecC
Q 002564          248 VISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (907)
Q Consensus       248 ~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (907)
                      ++.||.-..+  +++.++. +|.+.|.+++|+++|++||+++.|++|-+|.++ .+....+...+.+|...|..+.|+|.
T Consensus        84 t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             eEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCcEEEEeeeccccccccEEEEcCC
Confidence            9999987655  7788888 999999999999999999999999999999988 45567888999999999999999998


Q ss_pred             CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEE
Q 002564          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (907)
Q Consensus       326 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w  405 (907)
                      ..+|++++.|.+|++|+-..                                                            
T Consensus       162 ~dlL~S~SYDnTIk~~~~~~------------------------------------------------------------  181 (312)
T KOG0645|consen  162 EDLLFSCSYDNTIKVYRDED------------------------------------------------------------  181 (312)
T ss_pred             cceeEEeccCCeEEEEeecC------------------------------------------------------------
Confidence            88999999999999997431                                                            


Q ss_pred             EeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC
Q 002564          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (907)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  485 (907)
                                                   ++.+..+.                  .+        .+|...|.+++|++.
T Consensus       182 -----------------------------dddW~c~~------------------tl--------~g~~~TVW~~~F~~~  206 (312)
T KOG0645|consen  182 -----------------------------DDDWECVQ------------------TL--------DGHENTVWSLAFDNI  206 (312)
T ss_pred             -----------------------------CCCeeEEE------------------Ee--------cCccceEEEEEecCC
Confidence                                         11111111                  11        267778888888888


Q ss_pred             CCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc------eeEE-EeecCCC
Q 002564          486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL------RMVR-KFEGHTD  558 (907)
Q Consensus       486 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~------~~~~-~~~~h~~  558 (907)
                      |..|++++.|++++||...+.   -...+..++..+.|.  +..||+++.|+.|++|.-...      +++. .-..|..
T Consensus       207 G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~  281 (312)
T KOG0645|consen  207 GSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV  281 (312)
T ss_pred             CceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence            888888888888888875421   111223566777776  667888888888888865532      1111 2346889


Q ss_pred             CeeeEEECCC-CcEEEEEeCCCcEEEEEcC
Q 002564          559 RITDFCFSED-GKWLLSSGMDGSLRIWDVI  587 (907)
Q Consensus       559 ~I~~l~fspd-g~~l~s~s~Dg~I~vwd~~  587 (907)
                      .|++++|.|. ...|++++.||.|++|.+.
T Consensus       282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999999994 5789999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3e-35  Score=311.37  Aligned_cols=281  Identities=21%  Similarity=0.364  Sum_probs=241.2

Q ss_pred             eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEE
Q 002564          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (907)
Q Consensus       172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i  251 (907)
                      -+.+++......++|..|++++..+|.|..|..|++|.+... .+..+...        ++-.    .+=+++.|-.+.+
T Consensus       369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~--------~~l~----~~d~~sad~~~~~  435 (707)
T KOG0263|consen  369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDA--------SDLS----NIDTESADVDVDM  435 (707)
T ss_pred             EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccch--------hhhc----cccccccchhhhh
Confidence            456677666788999999999999999999999999998854 33333322        1111    1223444555777


Q ss_pred             EECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (907)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s  331 (907)
                      .|-.+.....++. +|.++|..+.|+|+.++|++++.|+++|+|.+++.    ..+-...||..||+.+.|+|.|-+++|
T Consensus       436 ~D~~~~~~~~~L~-GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~----s~~V~y~GH~~PVwdV~F~P~GyYFat  510 (707)
T KOG0263|consen  436 LDDDSSGTSRTLY-GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW----SCLVIYKGHLAPVWDVQFAPRGYYFAT  510 (707)
T ss_pred             ccccCCceeEEee-cCCCceeeeeecccccceeeccCCcceeeeecccc----eeEEEecCCCcceeeEEecCCceEEEe
Confidence            7877777777777 99999999999999999999999999999999876    456667799999999999999999999


Q ss_pred             EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (907)
Q Consensus       332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~  411 (907)
                      ++.|++-++|.......                                                               
T Consensus       511 as~D~tArLWs~d~~~P---------------------------------------------------------------  527 (707)
T KOG0263|consen  511 ASHDQTARLWSTDHNKP---------------------------------------------------------------  527 (707)
T ss_pred             cCCCceeeeeecccCCc---------------------------------------------------------------
Confidence            99999999998643221                                                               


Q ss_pred             ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEE
Q 002564          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (907)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  491 (907)
                                                                     .+.+        .+|-+.|.|+.|+|+..++++
T Consensus       528 -----------------------------------------------lRif--------aghlsDV~cv~FHPNs~Y~aT  552 (707)
T KOG0263|consen  528 -----------------------------------------------LRIF--------AGHLSDVDCVSFHPNSNYVAT  552 (707)
T ss_pred             -----------------------------------------------hhhh--------cccccccceEEECCccccccc
Confidence                                                           1112        389999999999999999999


Q ss_pred             EecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCc
Q 002564          492 AGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK  570 (907)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~  570 (907)
                      |+.|.++|+||..+|..++.+.++ ++|.+++|||+|++||+|+.||.|.+||+.+++++..+.+|++.|.++.||.||.
T Consensus       553 GSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~  632 (707)
T KOG0263|consen  553 GSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN  632 (707)
T ss_pred             CCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC
Confidence            999999999999999999999776 8999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCC
Q 002564          571 WLLSSGMDGSLRIWDVIL  588 (907)
Q Consensus       571 ~l~s~s~Dg~I~vwd~~~  588 (907)
                      .||+|+.|.+|++||+..
T Consensus       633 vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  633 VLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EEEecCCCCeEEEEEchh
Confidence            999999999999999864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.1e-35  Score=312.62  Aligned_cols=283  Identities=25%  Similarity=0.383  Sum_probs=235.8

Q ss_pred             eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEE
Q 002564          215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM  294 (907)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~v  294 (907)
                      +..++... ...++|..|++|+. ++|.|..|..|++|.+...++ ..++  +...+.         .+=+.+.|-.+.+
T Consensus       370 c~YT~~nt-~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl-~~lk--~~~~l~---------~~d~~sad~~~~~  435 (707)
T KOG0263|consen  370 CMYTFHNT-YQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKL-KKLK--DASDLS---------NIDTESADVDVDM  435 (707)
T ss_pred             EEEEEEEc-CCcceeEeecCCcc-hhhccccccEEEEEecchhhh-cccc--chhhhc---------cccccccchhhhh
Confidence            34445444 46799999999999 999999999999999876533 2332  221111         1223344444555


Q ss_pred             EEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccC
Q 002564          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (907)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (907)
                      .|-+..    ...+.+.||.++|..+.|+|+.++|++++.|+++|+|++.+....                         
T Consensus       436 ~D~~~~----~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~-------------------------  486 (707)
T KOG0263|consen  436 LDDDSS----GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL-------------------------  486 (707)
T ss_pred             ccccCC----ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeE-------------------------
Confidence            544333    334557799999999999999999999999999999997542211                         


Q ss_pred             ceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 002564          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (907)
Q Consensus       375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~  454 (907)
                                                                                        +             
T Consensus       487 ------------------------------------------------------------------V-------------  487 (707)
T KOG0263|consen  487 ------------------------------------------------------------------V-------------  487 (707)
T ss_pred             ------------------------------------------------------------------E-------------
Confidence                                                                              0             


Q ss_pred             CCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEE
Q 002564          455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATV  533 (907)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~  533 (907)
                            .+        .+|..+|..+.|+|.|-+++|++.|++-++|.....++.+.+..+ +.+.|+.|||++.++|+|
T Consensus       488 ------~y--------~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTG  553 (707)
T KOG0263|consen  488 ------IY--------KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATG  553 (707)
T ss_pred             ------Ee--------cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccC
Confidence                  11        389999999999999999999999999999999999999988777 899999999999999999


Q ss_pred             eCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCCCce
Q 002564          534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDV  612 (907)
Q Consensus       534 ~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spdg~~  612 (907)
                      +.|.+|++||+.+|..++.|.||.++|++++|||+|++|++|+.||.|.+||+.+|+++..+..|.. |.++.||.||..
T Consensus       554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v  633 (707)
T KOG0263|consen  554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV  633 (707)
T ss_pred             CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999988865 999999999999


Q ss_pred             EEEEEecCCeEEEeeccccccc
Q 002564          613 LATAHVDQNGVYLWVNRCMFSG  634 (907)
Q Consensus       613 lat~~~d~~~i~lW~~~~~~~~  634 (907)
                      ||+++.|. +|++||+...+..
T Consensus       634 Lasgg~Dn-sV~lWD~~~~~~~  654 (707)
T KOG0263|consen  634 LASGGADN-SVRLWDLTKVIEL  654 (707)
T ss_pred             EEecCCCC-eEEEEEchhhccc
Confidence            99999998 7999998654443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.5e-34  Score=283.56  Aligned_cols=443  Identities=15%  Similarity=0.262  Sum_probs=324.5

Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (907)
                      ...|++++|+|..++-+|+.+ .-.+.+|+..+......+. .....|.++.|..||++|++|+..|.|+++|+.+.   
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r---  100 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR---  100 (487)
T ss_pred             cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccH---
Confidence            368999999998776666665 4579999999888877776 67788999999999999999999999999985442   


Q ss_pred             cceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeec
Q 002564          304 PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (907)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (907)
                       .+++.+.+|+.++..+.|+| ++..+++|+.|+.+++||+.+..                                   
T Consensus       101 -~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-----------------------------------  144 (487)
T KOG0310|consen  101 -VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-----------------------------------  144 (487)
T ss_pred             -HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-----------------------------------
Confidence             57888899999999999999 66677788888888889874321                                   


Q ss_pred             ccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (907)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~  462 (907)
                                                                                       + ..+         +
T Consensus       145 -----------------------------------------------------------------v-~~~---------l  149 (487)
T KOG0310|consen  145 -----------------------------------------------------------------V-QAE---------L  149 (487)
T ss_pred             -----------------------------------------------------------------E-EEE---------e
Confidence                                                                             0 111         1


Q ss_pred             eccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECCCC-ceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEE
Q 002564          463 LDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR  540 (907)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~  540 (907)
                              .+|.+.|.+.+++|.+ .+++|||.||.|++||+... ..+.++.++.+|..+.+-|.|.++|+++. ..|+
T Consensus       150 --------~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vk  220 (487)
T KOG0310|consen  150 --------SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVK  220 (487)
T ss_pred             --------cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEE
Confidence                    3899999999999966 48899999999999999977 78889999999999999999999999875 5899


Q ss_pred             EEEcccc-eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEec
Q 002564          541 LFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD  619 (907)
Q Consensus       541 v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d  619 (907)
                      |||+.+| +.+..+..|...|||+++..++..|++++.|+.|++||+.+.+.+..+..+++|.+++.+|+++.++.|-.|
T Consensus       221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn  300 (487)
T KOG0310|consen  221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN  300 (487)
T ss_pred             EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence            9999955 556666669999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEeecccccccCCCCccCCCCCcceeecCCCccCCCCccCCCCCCCCCccCCCCCCCCCCCCCccccccCceeecC
Q 002564          620 QNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSL  699 (907)
Q Consensus       620 ~~~i~lW~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tls~  699 (907)
                      |. +.+=..           ..  ++                                                      
T Consensus       301 Gl-v~~rr~-----------~~--k~------------------------------------------------------  312 (487)
T KOG0310|consen  301 GL-VSIRRR-----------EV--KK------------------------------------------------------  312 (487)
T ss_pred             ce-eeeehh-----------hc--cc------------------------------------------------------
Confidence            83 322210           00  00                                                      


Q ss_pred             CchhhhhhccchHHHhhhCCCCCCCCCCC--CCCccccCCCCCCcccccCCCCCCcccchhhhccCCCCCCCCccHHHHH
Q 002564          700 LPKSQWQSLINLDIIKARNKPIEPPKKPE--KAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQL  777 (907)
Q Consensus       700 ~p~~~~~~l~~l~~i~~r~kp~~~~~~~~--~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  777 (907)
                                         ||...|+.+.  ..-||-..... +.    ..  ++++--....+++      ..+.|-+.
T Consensus       313 -------------------k~s~~~~~r~~r~~~~~v~~r~~-~~----~~--~~ddiv~n~~~r~------~L~~~Dk~  360 (487)
T KOG0310|consen  313 -------------------KPSKEPKRRADRSDGFFVKVRGQ-NY----KG--QKDDIVVNEVKRL------KLTYFDKR  360 (487)
T ss_pred             -------------------CCCccccccccccccceEeeecc-cc----cc--ccceeEecccccc------CCchHHHH
Confidence                               0000011110  01111111000 00    00  0000000000000      01122233


Q ss_pred             Hhh---------ccc-cCChHHHHHHHHhC-CCCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHhcCCCH
Q 002564          778 LHS---------CAE-MKNFSAFTDYIKSL-SPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNF  846 (907)
Q Consensus       778 l~~---------~~~-~~~~~~~~~~l~~~-~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  846 (907)
                      |.+         ..+ ..+...++.+|+.| ---++-..+..               -+..+|..+|+||.+.|...|-+
T Consensus       361 Lk~F~~kkALd~vl~~~~~pelvvavl~eL~~Rg~l~~AL~g---------------rde~eL~~lLnfl~~~l~~~rf~  425 (487)
T KOG0310|consen  361 LKQFKHKKALDHVLEPKKDPELVVAVLSELVHRGGLRRALAG---------------RDESELAPLLNFLVKNLTVVRFA  425 (487)
T ss_pred             HhhhhHHHHHHHHhcccCChhHHHHHHHHHHHhhHHHHHhcC---------------ccHHHHHHHHHHHHhhccchhhH
Confidence            322         111 22334444444443 12222222221               22488999999999999999999


Q ss_pred             HhHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHhhccceeeehhccccCC
Q 002564          847 EFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL  907 (907)
Q Consensus       847 ~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  907 (907)
                      ..+.-+.+.+|-+.+..|..+|.|.+.+..|+..++++ -++++.+...++||+-|.++.|
T Consensus       426 ~~L~~~~~~iLd~Y~~~i~~s~~l~k~i~~L~~~V~~E-v~~q~ellr~~G~ldmL~~~t~  485 (487)
T KOG0310|consen  426 SILMEVVSVILDLYARDIEGSPMLAKLIQALRGKVEQE-VRVQKELLRLIGMLDMLGSITM  485 (487)
T ss_pred             HHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhc
Confidence            99999999999999999999999999999999999655 4677777888899888876643

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-34  Score=277.83  Aligned_cols=307  Identities=20%  Similarity=0.350  Sum_probs=268.2

Q ss_pred             CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcE
Q 002564          170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (907)
Q Consensus       170 ~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I  249 (907)
                      .....+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+++| ...+..++|+..|+ ++++++.|-.+
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH-t~sv~di~~~a~Gk-~l~tcSsDl~~  174 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH-TDSVFDISFDASGK-YLATCSSDLSA  174 (406)
T ss_pred             CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc-ccceeEEEEecCcc-EEEecCCccch
Confidence            34566778889999999999999999999999999999999999998888877 66799999999998 99999999889


Q ss_pred             EEEECCC-ceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCE
Q 002564          250 SIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (907)
Q Consensus       250 ~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~  328 (907)
                      .+||..+ .+++..+. +|...|.++.|.|.|.++++++.|++|+.|+++++    -++.++.+|...|..++.+.||..
T Consensus       175 ~LWd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg----~cv~t~~~h~ewvr~v~v~~DGti  249 (406)
T KOG0295|consen  175 KLWDFDTFFRCIKSLI-GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG----YCVKTFPGHSEWVRMVRVNQDGTI  249 (406)
T ss_pred             hheeHHHHHHHHHHhc-CcccceeeEEEEecCCeeeecccccceeEEecccc----eeEEeccCchHhEEEEEecCCeeE
Confidence            9999987 46677776 89999999999999999999999999999999987    678999999999999999999999


Q ss_pred             EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEee
Q 002564          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (907)
Q Consensus       329 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~  408 (907)
                      +++++.|.++++|-+.+.++..++                                                        
T Consensus       250 ~As~s~dqtl~vW~~~t~~~k~~l--------------------------------------------------------  273 (406)
T KOG0295|consen  250 IASCSNDQTLRVWVVATKQCKAEL--------------------------------------------------------  273 (406)
T ss_pred             EEecCCCceEEEEEeccchhhhhh--------------------------------------------------------
Confidence            999999999999998776544332                                                        


Q ss_pred             eceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCE
Q 002564          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (907)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  488 (907)
                                  ..|..++.+++|.|...+=-+...                          .+..         ..+++
T Consensus       274 ------------R~hEh~vEci~wap~~~~~~i~~a--------------------------t~~~---------~~~~~  306 (406)
T KOG0295|consen  274 ------------REHEHPVECIAWAPESSYPSISEA--------------------------TGST---------NGGQV  306 (406)
T ss_pred             ------------hccccceEEEEecccccCcchhhc--------------------------cCCC---------CCccE
Confidence                        245577888888775431100000                          0110         14579


Q ss_pred             EEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECC
Q 002564          489 MISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (907)
Q Consensus       489 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp  567 (907)
                      +.+++.|++|++||+.++.++.++..+ ..|..++|+|.|++|+++.+|+++++||++++++...+..|..-|+++.|..
T Consensus       307 l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~  386 (406)
T KOG0295|consen  307 LGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK  386 (406)
T ss_pred             EEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence            999999999999999999999988766 8999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEc
Q 002564          568 DGKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       568 dg~~l~s~s~Dg~I~vwd~  586 (907)
                      +..+++||+-|.++++|.-
T Consensus       387 ~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  387 TAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCceEEeccccceeeeeec
Confidence            9999999999999999974

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=3.1e-32  Score=272.18  Aligned_cols=467  Identities=16%  Similarity=0.217  Sum_probs=350.9

Q ss_pred             cCCeEEEEEEeCC--------eEEEEEcCcceEEEecCCCCcceEEEEEecC--eEEEEE-c--Ce--EEEEeCCee--E
Q 002564           24 LGTENFVTVSVGK--------AFHIYNCAKLNLVLVGPQLPKKIRALASYRD--YTFAAY-G--NH--IAVVKRAHQ--V   86 (907)
Q Consensus        24 ~~~~~~~~~~~~~--------~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~--~~~~a~-g--~~--I~vw~~~~~--~   86 (907)
                      |+...++++...+        .++|||..+++-+++.......|+|+||++-  |.++.. +  +.  +.|||..+.  .
T Consensus       114 Pdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~  193 (626)
T KOG2106|consen  114 PDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKL  193 (626)
T ss_pred             CCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhcc
Confidence            3444455455544        3899999999988888888999999999965  555443 2  22  888885543  3


Q ss_pred             EEEcccccceEEEEe---eCCEEEEEecCCcEEEEecCCCCccccceeeEec-CCCcccEEEEcCCCCCCEEEEEecCCc
Q 002564           87 ATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL-DDKFTPTCIMHPDTYLNKVIVGSQEGS  162 (907)
Q Consensus        87 ~~~~~h~~~V~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~l~~~s~dg~  162 (907)
                      ...+.-...|....|   +.+.+++++ .|.+.+|+..++.+... ...++. ..+++.++.|.+++.   +++|..+|.
T Consensus       194 ~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~-~~~fek~ekk~Vl~v~F~engd---viTgDS~G~  268 (626)
T KOG2106|consen  194 GPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKR-QGIFEKREKKFVLCVTFLENGD---VITGDSGGN  268 (626)
T ss_pred             CcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEE-eeccccccceEEEEEEEcCCCC---EEeecCCce
Confidence            334545556666665   567777777 89999999998876321 122222 236777888999984   999999999


Q ss_pred             EEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEee-cCCCCEEEEEEecCCCCEEE
Q 002564          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLA  241 (907)
Q Consensus       163 i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~dg~~~l~  241 (907)
                      |.||+..+.+..+....|.+.|.+++.-.+|.+|- |+.|..|..|| ..-+.++.... ...++|..++=.  +. =+.
T Consensus       269 i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~--~~-di~  343 (626)
T KOG2106|consen  269 ILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEG--KG-DIL  343 (626)
T ss_pred             EEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecC--CC-cEE
Confidence            99999988888888779999999999999997655 99999999999 43444443332 224678877643  22 266


Q ss_pred             EEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEE
Q 002564          242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR  321 (907)
Q Consensus       242 sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~  321 (907)
                      +|...+.|.-=+++++-.+...  +|......++.+|+.+.+++++.|+.+++|+ + .    ++.-. ..-..++.|+.
T Consensus       344 vGTtrN~iL~Gt~~~~f~~~v~--gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~----k~~wt-~~~~d~~~~~~  414 (626)
T KOG2106|consen  344 VGTTRNFILQGTLENGFTLTVQ--GHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-H----KLEWT-KIIEDPAECAD  414 (626)
T ss_pred             EeeccceEEEeeecCCceEEEE--ecccceeeEEcCCChhheeeccCcceEEEcc-C-C----ceeEE-EEecCceeEee
Confidence            7777777777777766555444  6999999999999999999999999999997 1 1    22222 23457889999


Q ss_pred             EecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCce
Q 002564          322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  401 (907)
Q Consensus       322 ~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  401 (907)
                      |+|.| .++.|...|...+.|.++......                                            +.    
T Consensus       415 fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~--------------------------------------------~~----  445 (626)
T KOG2106|consen  415 FHPSG-VVAVGTATGRWFVLDTETQDLVTI--------------------------------------------HT----  445 (626)
T ss_pred             ccCcc-eEEEeeccceEEEEecccceeEEE--------------------------------------------Ee----
Confidence            99999 999999999999999876322211                                            11    


Q ss_pred             EEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc-ceeeeccccccccCcCCcEEEE
Q 002564          402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGV  480 (907)
Q Consensus       402 v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~l  480 (907)
                                          . ..+++++.++|+|.++++|+.|+.|++|.+..+.. .....       ..|..+|+.+
T Consensus       446 --------------------d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-------k~~gs~ithL  497 (626)
T KOG2106|consen  446 --------------------D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-------KCSGSPITHL  497 (626)
T ss_pred             --------------------c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-------eecCceeEEe
Confidence                                1 37899999999999999999999999999865443 33333       3455899999


Q ss_pred             EEcCCCCEEEEEecCCeEEEEECCCCceeeeee-------------------cCcceeEEEEeeCCCEEEEEeCCCeEEE
Q 002564          481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-------------------VGCSLVKIVYHRVNGLLATVADDLVIRL  541 (907)
Q Consensus       481 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~i~~~~~s~~~~~la~~~~dg~I~v  541 (907)
                      .|++|++++.+-+.|-.|-+|.-...+.+...+                   ....|..++-+.+.+++|+|.+.|.|++
T Consensus       498 DwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~l  577 (626)
T KOG2106|consen  498 DWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHL  577 (626)
T ss_pred             eecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEE
Confidence            999999999999999999999543332222111                   1244556666777889999999999999


Q ss_pred             EEcccc---eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEc
Q 002564          542 FDVVAL---RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       542 ~d~~~~---~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~  586 (907)
                      |...--   .....+.+|.+.|++++|..+...+++.+.|.+|..|++
T Consensus       578 f~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  578 FSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             EccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            987543   345677899999999999998888998889999999986

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.5e-35  Score=287.10  Aligned_cols=279  Identities=21%  Similarity=0.395  Sum_probs=244.2

Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (907)
                      +.+|..+.|.|+|+ -|++|+..|.+.+|+..+......++ +|+.+|.++.|++++.++++|+.+|.|++|+.....  
T Consensus        96 kc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--  171 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--  171 (464)
T ss_pred             ccceeeEEEcCCCc-eeEeecccccEEEecCceeeHHHHhh-hhcccceeEEEccCCCEEEEcCCCceEEecccchhh--
Confidence            46899999999999 88999999999999986665555555 999999999999999999999999999999766542  


Q ss_pred             cceeEeccC-CCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeec
Q 002564          304 PRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (907)
Q Consensus       304 ~~~~~~~~~-h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (907)
                         ++.... |...|++++|+|+...+++|+.||+|+|||....+....+                              
T Consensus       172 ---Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL------------------------------  218 (464)
T KOG0284|consen  172 ---VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL------------------------------  218 (464)
T ss_pred             ---hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee------------------------------
Confidence               333334 5589999999999899999999999999997544322111                              


Q ss_pred             ccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (907)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~  462 (907)
                                                                                                      
T Consensus       219 --------------------------------------------------------------------------------  218 (464)
T KOG0284|consen  219 --------------------------------------------------------------------------------  218 (464)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEE
Q 002564          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL  541 (907)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v  541 (907)
                              .+|.-.|.+++|+|...+++++|.|..|++||.+++.++.++..+ ..|..+.|++++++|++++.|..+++
T Consensus       219 --------~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv  290 (464)
T KOG0284|consen  219 --------RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV  290 (464)
T ss_pred             --------ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence                    389999999999999999999999999999999999999988655 88999999999999999999999999


Q ss_pred             EEcccceeEEEeecCCCCeeeEEECCC-CcEEEEEeCCCcEEEEEcCCCceeeEeee--CCceEEEEECCCCceEEEEEe
Q 002564          542 FDVVALRMVRKFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWDVILARQIDAIHV--DVSITALSLSPNMDVLATAHV  618 (907)
Q Consensus       542 ~d~~~~~~~~~~~~h~~~I~~l~fspd-g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~--~~~v~~l~~spdg~~lat~~~  618 (907)
                      +|+++.+.++++++|...|++++|+|- ..+|.+|+.||.|..|.+...+++..+..  ...|++++|+|=|..|++++.
T Consensus       291 ~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn  370 (464)
T KOG0284|consen  291 FDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN  370 (464)
T ss_pred             EehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence            999999999999999999999999994 46788999999999999997777766653  345999999999999999999


Q ss_pred             cCCeEEEeec
Q 002564          619 DQNGVYLWVN  628 (907)
Q Consensus       619 d~~~i~lW~~  628 (907)
                      |. ++++|.-
T Consensus       371 d~-t~rfw~r  379 (464)
T KOG0284|consen  371 DR-TVRFWTR  379 (464)
T ss_pred             Cc-ceeeecc
Confidence            98 7999983

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-32  Score=289.89  Aligned_cols=424  Identities=16%  Similarity=0.261  Sum_probs=322.1

Q ss_pred             EcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEE
Q 002564           89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (907)
Q Consensus        89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iw  166 (907)
                      +...+.+|..++|  ...|++++-..|.|++||..-+.+    +..+..|.+.+..+.|||..  ..+++|+.|-.|++|
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl----i~rFdeHdGpVRgv~FH~~q--plFVSGGDDykIkVW   78 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL----IDRFDEHDGPVRGVDFHPTQ--PLFVSGGDDYKIKVW   78 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhH----HhhhhccCCccceeeecCCC--CeEEecCCccEEEEE
Confidence            4455678888886  678999999999999999998888    88888999999999999999  789999999999999


Q ss_pred             ecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCC
Q 002564          167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS  246 (907)
Q Consensus       167 d~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d  246 (907)
                      |.++.++++++.||-..|..+.|++.-.++++++.|.+|+|||..+++++..+.+| ...|.|..|+|... ++++++-|
T Consensus        79 nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhptED-lIVSaSLD  156 (1202)
T KOG0292|consen   79 NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPTED-LIVSASLD  156 (1202)
T ss_pred             ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCccc-eEEEeccc
Confidence            99999999999999999999999999999999999999999999999999999987 88999999999877 89999999


Q ss_pred             CcEEEEECCCc----------------------------eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564          247 GVISIWNLEKR----------------------------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (907)
Q Consensus       247 g~I~iwd~~~~----------------------------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (907)
                      .+|+|||+..-                            ..++.+..+|+..|+.++|+|.-+++++|+.|+.|++|.++
T Consensus       157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn  236 (1202)
T KOG0292|consen  157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN  236 (1202)
T ss_pred             ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEec
Confidence            99999998521                            11223335999999999999999999999999999999876


Q ss_pred             CCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeE
Q 002564          299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (907)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  378 (907)
                      ...  .-.+.+..||.+.|.++-|+|...++++.|.|++|++||+...+....+..                        
T Consensus       237 etK--aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr------------------------  290 (1202)
T KOG0292|consen  237 ETK--AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR------------------------  290 (1202)
T ss_pred             ccc--ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec------------------------
Confidence            542  234566789999999999999989999999999999999987665554321                        


Q ss_pred             eeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 002564          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  458 (907)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~  458 (907)
                                                                  .......++.+|..+.++.|..+| +.+|.++.-  
T Consensus       291 --------------------------------------------endRFW~laahP~lNLfAAgHDsG-m~VFkleRE--  323 (1202)
T KOG0292|consen  291 --------------------------------------------ENDRFWILAAHPELNLFAAGHDSG-MIVFKLERE--  323 (1202)
T ss_pred             --------------------------------------------cCCeEEEEEecCCcceeeeecCCc-eEEEEEccc--
Confidence                                                        236788999999999999887666 445554421  


Q ss_pred             ceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeee--ecC----cceeEEEEeeCCCEEEE
Q 002564          459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW--EVG----CSLVKIVYHRVNGLLAT  532 (907)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~----~~i~~~~~s~~~~~la~  532 (907)
                                      .++  .+++. +.++.. - |..|+.+|+.+.+.....  ...    .+..++.|+|..+.+..
T Consensus       324 ----------------rpa--~~v~~-n~LfYv-k-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vli  382 (1202)
T KOG0292|consen  324 ----------------RPA--YAVNG-NGLFYV-K-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLI  382 (1202)
T ss_pred             ----------------Cce--EEEcC-CEEEEE-c-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEE
Confidence                            122  22332 223333 2 789999999886543332  222    57788899886654443


Q ss_pred             Ee--CCCeEEEEEcccc-------ee----------------EEE---------eecCCC----------CeeeEEECCC
Q 002564          533 VA--DDLVIRLFDVVAL-------RM----------------VRK---------FEGHTD----------RITDFCFSED  568 (907)
Q Consensus       533 ~~--~dg~I~v~d~~~~-------~~----------------~~~---------~~~h~~----------~I~~l~fspd  568 (907)
                      ++  +++.-.++.+...       +.                ...         +++-.+          .+..|-+..+
T Consensus       383 cs~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~  462 (1202)
T KOG0292|consen  383 CSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGT  462 (1202)
T ss_pred             EeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccC
Confidence            32  2333334433211       00                000         111111          2333444555


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEE
Q 002564          569 GKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH  617 (907)
Q Consensus       569 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~  617 (907)
                      |.+|+.  ....|.+||++..+.+..+.. +.|.-+.||+|+.++|--+
T Consensus       463 g~lll~--~~~~v~lfdvQq~~~~~si~~-s~vkyvvws~dm~~vAll~  508 (1202)
T KOG0292|consen  463 GNLLLR--SPDSVTLFDVQQKKKVGSIKV-SKVKYVVWSNDMSRVALLS  508 (1202)
T ss_pred             ccEEEE--cCCeEEEEEeecceEEEEEec-CceeEEEEcCccchhhhcc
Confidence            555543  244699999998888887764 4588899999888766444

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=254.37  Aligned_cols=294  Identities=18%  Similarity=0.275  Sum_probs=245.0

Q ss_pred             eeeEecCCCcccEEEEcCC-CCCCEEEEEecCCcEEEEecCC---CeEEEEE-cCCCCCEEEEEEcCCCCEEEEEecCCe
Q 002564          130 VGHVKLDDKFTPTCIMHPD-TYLNKVIVGSQEGSLQLWNIST---KKKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGK  204 (907)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~-~~~~~l~~~s~dg~i~iwd~~~---~~~~~~~-~~h~~~I~~l~~sp~~~~la~g~~dg~  204 (907)
                      +..++.+.+.+...++||. |  ..|++|+.|+.|++|+...   -.+...+ .+|+..|++++|+|.|++||+|+-|.+
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g--~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKG--VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCc--eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            5667778888999999998 6  6899999999999999874   3444444 479999999999999999999999999


Q ss_pred             EEEEEccCC--ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc---eeeeeeecccccCeEEEEEecC
Q 002564          205 IHVHNVRYD--EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFAN  279 (907)
Q Consensus       205 I~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~  279 (907)
                      +.||.-..+  +++.++.+| ...|.|++|+++|. +||+++.|..|.||.+..+   .+...++ .|...|..+.|+|.
T Consensus        85 ~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGH-ENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPT  161 (312)
T ss_pred             EEEeecCCCceeEEeeeecc-ccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCC
Confidence            999986644  466777665 88999999999999 9999999999999998754   6777777 99999999999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhH
Q 002564          280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAK  359 (907)
Q Consensus       280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  359 (907)
                      ..+|++++.|++|++|+-.. +..+.+..++.+|...|.+++|++.|..|++++.|+++++|.....-            
T Consensus       162 ~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------------  228 (312)
T KOG0645|consen  162 EDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------------  228 (312)
T ss_pred             cceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------------
Confidence            99999999999999998765 66789999999999999999999999999999999999999854210            


Q ss_pred             HHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEE
Q 002564          360 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA  439 (907)
Q Consensus       360 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  439 (907)
                                                                                  ...|...+..++|.  ...+
T Consensus       229 ------------------------------------------------------------~~~~sr~~Y~v~W~--~~~I  246 (312)
T KOG0645|consen  229 ------------------------------------------------------------SGMHSRALYDVPWD--NGVI  246 (312)
T ss_pred             ------------------------------------------------------------chhcccceEeeeec--ccce
Confidence                                                                        01234677778887  5678


Q ss_pred             EEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC-CCEEEEEecCCeEEEEECC
Q 002564          440 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       440 ~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~  504 (907)
                      ++++.|+.|++|.-..+..-..+... ......|...|++++|+|. ..+|++++.||.|++|.+.
T Consensus       247 aS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  247 ASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EeccCCCEEEEEEecCCCCCchHHHH-HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            99999999999987654222222110 1112479999999999994 6889999999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.1e-33  Score=270.70  Aligned_cols=280  Identities=20%  Similarity=0.396  Sum_probs=252.2

Q ss_pred             ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (907)
Q Consensus       221 ~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (907)
                      .+|.+.|.|+++.|.++ ++++|+.|++|+|||+.+|++..++. +|-..|..+++++.-+++++++.|+.|+.||+...
T Consensus       148 ~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n  225 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN  225 (460)
T ss_pred             hhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence            44589999999999988 99999999999999999999999998 99999999999999999999999999999999876


Q ss_pred             CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEee
Q 002564          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (907)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  380 (907)
                          +.++.+.||-..|.+++.+|.-..|++|+.|.++|+||+++...+..                             
T Consensus       226 ----kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~-----------------------------  272 (460)
T KOG0285|consen  226 ----KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV-----------------------------  272 (460)
T ss_pred             ----hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE-----------------------------
Confidence                67888899999999999999888999999999999999875432211                             


Q ss_pred             ecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccce
Q 002564          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (907)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~  460 (907)
                                                                                                      
T Consensus       273 --------------------------------------------------------------------------------  272 (460)
T KOG0285|consen  273 --------------------------------------------------------------------------------  272 (460)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeE
Q 002564          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVI  539 (907)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I  539 (907)
                       +        .+|..+|..+.+.|.+..+++|+.|++|++||+..++...++.++ ..+.+++.+|....+|+++.| .|
T Consensus       273 -l--------~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-ni  342 (460)
T KOG0285|consen  273 -L--------SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NI  342 (460)
T ss_pred             -e--------cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cc
Confidence             1        389999999999998889999999999999999999988887666 789999999999999999887 68


Q ss_pred             EEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEe---------eeCCceEEEEECCCC
Q 002564          540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI---------HVDVSITALSLSPNM  610 (907)
Q Consensus       540 ~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~---------~~~~~v~~l~~spdg  610 (907)
                      +-|++..+..+..+.+|+..|++++...|| ++++|+..|.+.+||.++|...+..         ..+..|.+.+|...|
T Consensus       343 k~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg  421 (460)
T KOG0285|consen  343 KQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG  421 (460)
T ss_pred             eeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence            999999999999999999999999999887 7888999999999999998655444         234459999999999


Q ss_pred             ceEEEEEecCCeEEEee
Q 002564          611 DVLATAHVDQNGVYLWV  627 (907)
Q Consensus       611 ~~lat~~~d~~~i~lW~  627 (907)
                      ..|+|+..|. +|++|.
T Consensus       422 ~rlit~eadK-tIk~~k  437 (460)
T KOG0285|consen  422 SRLITGEADK-TIKMYK  437 (460)
T ss_pred             ceEEeccCCc-ceEEEe
Confidence            9999999999 699997

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.9e-33  Score=260.95  Aligned_cols=282  Identities=18%  Similarity=0.337  Sum_probs=246.6

Q ss_pred             ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 002564          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (907)
Q Consensus       221 ~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~  299 (907)
                      .+|++.|+.+.|+|+|. ++|+|+.|..|.+|+.... +-...++ +|.++|..+.|.+|++.++++|.|.+++.||..+
T Consensus        44 ~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             CCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            45689999999999999 9999999999999996544 5555566 9999999999999999999999999999999987


Q ss_pred             CCCCcceeEeccCCCCCCeEEEEecCC-CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeE
Q 002564          300 TDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (907)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  378 (907)
                      +    +..+...+|..-++++.-..-| .++.+++.||++++||+++....+.+.                         
T Consensus       122 G----~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-------------------------  172 (338)
T KOG0265|consen  122 G----KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-------------------------  172 (338)
T ss_pred             c----eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------------------------
Confidence            7    5677788999999999855544 456688899999999998765554431                         


Q ss_pred             eeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 002564          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  458 (907)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~  458 (907)
                                                                  .+..++++.|...+..+++|.-|+.|++||+..+..
T Consensus       173 --------------------------------------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~  208 (338)
T KOG0265|consen  173 --------------------------------------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG  208 (338)
T ss_pred             --------------------------------------------cceeEEEEEecccccceeeccccCceeeeccccCcc
Confidence                                                        237789999999999999999999999999998888


Q ss_pred             ceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC----ceeeeeecC-----cceeEEEEeeCCCE
Q 002564          459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG-----CSLVKIVYHRVNGL  529 (907)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~-----~~i~~~~~s~~~~~  529 (907)
                      ...+.        +|.+.|+++..+++|.++.+-+.|.++++||+...    +++..+..+     .....++|+|++..
T Consensus       209 ~~~ls--------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~  280 (338)
T KOG0265|consen  209 LYTLS--------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK  280 (338)
T ss_pred             eEEee--------cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence            88775        99999999999999999999999999999998743    345555443     45677899999999


Q ss_pred             EEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564          530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (907)
Q Consensus       530 la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd  585 (907)
                      +.+|+.|..+++||..+...+..+.||.+.|+.++|+|...+|.+++.|.+|++=.
T Consensus       281 i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  281 ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             cccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            99999999999999999999999999999999999999999999999999998743

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.4e-34  Score=276.07  Aligned_cols=291  Identities=21%  Similarity=0.322  Sum_probs=252.3

Q ss_pred             eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEE
Q 002564          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (907)
Q Consensus       261 ~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~i  340 (907)
                      ..+. .|...|.-+.|+++|++||+++.|.+..+|.+..... ..+..++.+|..+|..+.|+||.+++++|+.|..+++
T Consensus       218 qil~-~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  218 QILQ-DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhHh-hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            3444 7999999999999999999999999999999876544 6778899999999999999999999999999999999


Q ss_pred             EEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecC
Q 002564          341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  420 (907)
Q Consensus       341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~  420 (907)
                      ||+.++.....+..                                                                  
T Consensus       296 wDv~tgd~~~~y~~------------------------------------------------------------------  309 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPS------------------------------------------------------------------  309 (519)
T ss_pred             ccCCcchhhhhccc------------------------------------------------------------------
Confidence            99988765544432                                                                  


Q ss_pred             CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEE
Q 002564          421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (907)
Q Consensus       421 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  500 (907)
                       ++...+.+++|.|||..+++|+.|+.+..|++.... .....       ......|.++++++||+++++.+.|..|++
T Consensus       310 -~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~-------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l  380 (519)
T KOG0293|consen  310 -GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWE-------GVRDPKVHDLAITYDGKYVLLVTVDKKIRL  380 (519)
T ss_pred             -CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhccc-------ccccceeEEEEEcCCCcEEEEEecccceee
Confidence             123678999999999999999999999999997554 33332       123356999999999999999999999999


Q ss_pred             EECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCC--eeeEEECC-CCcEEEEEeC
Q 002564          501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSE-DGKWLLSSGM  577 (907)
Q Consensus       501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~--I~~l~fsp-dg~~l~s~s~  577 (907)
                      ++..+...+..+..+.+|++++.|.+++++.+.-.+..+++||++..+.++++.||...  |-.-||-- +..++++||+
T Consensus       381 ~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE  460 (519)
T KOG0293|consen  381 YNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE  460 (519)
T ss_pred             echhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence            99998888878888899999999999999999999999999999999999999999754  34445654 5589999999


Q ss_pred             CCcEEEEEcCCCceeeEeeeCCc-eEEEEECCC-CceEEEEEecCCeEEEeecc
Q 002564          578 DGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-MDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       578 Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spd-g~~lat~~~d~~~i~lW~~~  629 (907)
                      |+.|+||+..+|+++..+.+|.. |.+++|+|. -.++|+|+.|| +|+||.+.
T Consensus       461 D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg-tIRIWg~~  513 (519)
T KOG0293|consen  461 DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG-TIRIWGPS  513 (519)
T ss_pred             CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC-eEEEecCC
Confidence            99999999999999999999987 999999995 46788888888 79999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-33  Score=274.29  Aligned_cols=291  Identities=16%  Similarity=0.273  Sum_probs=231.5

Q ss_pred             eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCce---EEEEeecCCCCEEEEEEecCCCCEEEEEeCCCc
Q 002564          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE---LVTFTHSMRGAVTALAFSSDGQPLLASGASSGV  248 (907)
Q Consensus       172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~---~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~  248 (907)
                      +..+.+..|...|..+.||++|++||+++.|.+..+|.+.....   ..++.+| ..+|..+.||||.+ +|++|+.+..
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh-~~~V~yi~wSPDdr-yLlaCg~~e~  292 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH-SQPVSYIMWSPDDR-YLLACGFDEV  292 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc-cCceEEEEECCCCC-eEEecCchHh
Confidence            34566788999999999999999999999999999999887655   5555555 78999999999999 7778888888


Q ss_pred             EEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCC-CCCCeEEEEecCCC
Q 002564          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANGR  327 (907)
Q Consensus       249 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~g~  327 (907)
                      +.+||..+|.+...+..+|...+.+++|.|||..+++|+.|+++..|+++...     +....+- ...|.+++..+||+
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-----~~~W~gvr~~~v~dlait~Dgk  367 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-----LGNWEGVRDPKVHDLAITYDGK  367 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-----hhcccccccceeEEEEEcCCCc
Confidence            99999999999999987778999999999999999999999999999887542     2222221 13456666666666


Q ss_pred             EEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEe
Q 002564          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (907)
Q Consensus       328 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~  407 (907)
                      ++++.+.|..+++++..                                                               
T Consensus       368 ~vl~v~~d~~i~l~~~e---------------------------------------------------------------  384 (519)
T KOG0293|consen  368 YVLLVTVDKKIRLYNRE---------------------------------------------------------------  384 (519)
T ss_pred             EEEEEecccceeeechh---------------------------------------------------------------
Confidence            66666666666665543                                                               


Q ss_pred             eeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC
Q 002564          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (907)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  487 (907)
                                                                     ....+...         .-..+|+++.++.+++
T Consensus       385 -----------------------------------------------~~~dr~li---------se~~~its~~iS~d~k  408 (519)
T KOG0293|consen  385 -----------------------------------------------ARVDRGLI---------SEEQPITSFSISKDGK  408 (519)
T ss_pred             -----------------------------------------------hhhhhccc---------cccCceeEEEEcCCCc
Confidence                                                           22222211         3345688888888888


Q ss_pred             EEEEEecCCeEEEEECCCCceeeeeecC---cceeEEEEee-CCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeE
Q 002564          488 LMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF  563 (907)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~-~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l  563 (907)
                      ++++.-.+..+++||+...++++.+.++   .-+..-||.- +..++|+|++|+.|+||+..+++++..+.||...|+++
T Consensus       409 ~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcV  488 (519)
T KOG0293|consen  409 LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCV  488 (519)
T ss_pred             EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEE
Confidence            8888888888899998888777777655   2334445543 55899999999999999999999999999999999999


Q ss_pred             EECCCC-cEEEEEeCCCcEEEEEcCC
Q 002564          564 CFSEDG-KWLLSSGMDGSLRIWDVIL  588 (907)
Q Consensus       564 ~fspdg-~~l~s~s~Dg~I~vwd~~~  588 (907)
                      +|+|.. .++|+||.||+||||....
T Consensus       489 swNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  489 SWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ecCCCCHHHhhccCCCCeEEEecCCc
Confidence            999954 6899999999999998653

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.3e-33  Score=267.44  Aligned_cols=295  Identities=17%  Similarity=0.256  Sum_probs=258.4

Q ss_pred             EEEEcccccceEEEEee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcE
Q 002564           86 VATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL  163 (907)
Q Consensus        86 ~~~~~~h~~~V~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i  163 (907)
                      .+.+.||.+.|.+++++  ..|+++++.|++|+|||+.++++    ..++.+|-..+..+++++..  .++++++.|+.|
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L----kltltGhi~~vr~vavS~rH--pYlFs~gedk~V  217 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL----KLTLTGHIETVRGVAVSKRH--PYLFSAGEDKQV  217 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE----EEeecchhheeeeeeecccC--ceEEEecCCCee
Confidence            34489999999999975  78999999999999999999999    77888888888889999988  799999999999


Q ss_pred             EEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEE
Q 002564          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG  243 (907)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg  243 (907)
                      +.||++..+.++.+.||-+.|.|++..|.-++|++|+.|..++|||+++...+..+.+| ..+|..+.+.|-.. .+++|
T Consensus       218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~~dp-qvit~  295 (460)
T KOG0285|consen  218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQPTDP-QVITG  295 (460)
T ss_pred             EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeecCCC-ceEEe
Confidence            99999999999999999999999999999999999999999999999999999999887 89999999998766 69999


Q ss_pred             eCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564          244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (907)
Q Consensus       244 ~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (907)
                      +.|++|++||+..|+...++. .|...|.+++.+|....+++++.|+ |+.|++..+    ..+..+.+|...+++++.+
T Consensus       296 S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g----~f~~nlsgh~~iintl~~n  369 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG----EFLQNLSGHNAIINTLSVN  369 (460)
T ss_pred             cCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCcc----chhhccccccceeeeeeec
Confidence            999999999999999999998 8999999999999999999999874 899987655    4566688999999999999


Q ss_pred             cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (907)
Q Consensus       324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  403 (907)
                      .|| ++++|+.+|.+..||.+++..-+......                                               
T Consensus       370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~v-----------------------------------------------  401 (460)
T KOG0285|consen  370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIV-----------------------------------------------  401 (460)
T ss_pred             cCc-eEEEcCCceEEEEEecCcCcccccccccc-----------------------------------------------
Confidence            887 89999999999999998765443321100                                               


Q ss_pred             EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 002564          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  455 (907)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~  455 (907)
                                   ....-.....|.+.+|...|..|++|..|.+|.+|.-..
T Consensus       402 -------------qpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  402 -------------QPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             -------------cCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence                         000012236789999999999999999999999997543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.8e-34  Score=278.90  Aligned_cols=283  Identities=19%  Similarity=0.309  Sum_probs=248.3

Q ss_pred             CcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEE
Q 002564          138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV  217 (907)
Q Consensus       138 ~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~  217 (907)
                      ..+..+.|.|+|  +.|++|+..|.+.+||..+..--..+..|.++|+++.|++++.++++|+.+|.|++|+.. ...+.
T Consensus        97 c~V~~v~WtPeG--RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk  173 (464)
T KOG0284|consen   97 CPVNVVRWTPEG--RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVK  173 (464)
T ss_pred             cceeeEEEcCCC--ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhH
Confidence            345677899999  899999999999999975444444467899999999999999999999999999999976 45556


Q ss_pred             EEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q 002564          218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF  297 (907)
Q Consensus       218 ~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~  297 (907)
                      .+..+|...|++++|+|+.. .+++++.||+|+|||....+....+. +|.-.|.+++|+|...+++++|.|+.|++||-
T Consensus       174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDnlVKlWDp  251 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP  251 (464)
T ss_pred             HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccceeEEccCCceeEeecC
Confidence            66677678999999999877 89999999999999999998888887 99999999999999999999999999999987


Q ss_pred             cCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCcee
Q 002564          298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  377 (907)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  377 (907)
                      .++    .++.++.+|...|..+.|.+++++|+++|.|..++++|+++.+....                          
T Consensus       252 rSg----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~--------------------------  301 (464)
T KOG0284|consen  252 RSG----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT--------------------------  301 (464)
T ss_pred             CCc----chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH--------------------------
Confidence            665    57888899999999999999999999999999999999975443332                          


Q ss_pred             EeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 002564          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSG  456 (907)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~  456 (907)
                                                                ..+|...+++++|+|.. +.+.+|+.||.|..|.+...
T Consensus       302 ------------------------------------------~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~  339 (464)
T KOG0284|consen  302 ------------------------------------------YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE  339 (464)
T ss_pred             ------------------------------------------hhcchhhheeeccccccccceeeccCCCceEEEecccc
Confidence                                                      22566889999999975 67889999999999999866


Q ss_pred             ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564          457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  504 (907)
                      ..+....       .+|...|.+++++|-|.+|++|+.|.++++|.-.
T Consensus       340 ~p~~~i~-------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  340 EPLGEIP-------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             ccccCCC-------cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            6666665       6999999999999999999999999999999754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.6e-32  Score=256.07  Aligned_cols=299  Identities=18%  Similarity=0.270  Sum_probs=255.8

Q ss_pred             ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEec-CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeE
Q 002564          127 LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI-STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKI  205 (907)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~-~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I  205 (907)
                      ..|+..+..|.+.+.++.|+|++  ..+++|+.|..|.+|++ ...+....+++|.+.|..+.|.+|++.|++++.|.+|
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~g--s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v  114 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDG--SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV  114 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCC--CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence            34566677889999999999999  89999999999999995 4566778899999999999999999999999999999


Q ss_pred             EEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEE
Q 002564          206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS  285 (907)
Q Consensus       206 ~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  285 (907)
                      +.||.++|+.++.+..| ..-|.++.-+.-|..++.+|+.||++++||+++...++++.  ....++++.|..++..+++
T Consensus       115 ~~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~s  191 (338)
T KOG0265|consen  115 RGWDAETGKRIRKHKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVIS  191 (338)
T ss_pred             EEEecccceeeehhccc-cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceee
Confidence            99999999999999887 77889998766777788899999999999999999988885  5678999999999999999


Q ss_pred             EcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhcc
Q 002564          286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  365 (907)
Q Consensus       286 ~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  365 (907)
                      |+-|+.|++||+...    ..+..+.||.++|+.+..+++|.++++-+.|.++++||++.-.....              
T Consensus       192 ggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R--------------  253 (338)
T KOG0265|consen  192 GGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR--------------  253 (338)
T ss_pred             ccccCceeeeccccC----cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc--------------
Confidence            999999999998766    35677889999999999999999999999999999999864322111              


Q ss_pred             chhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC
Q 002564          366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG  445 (907)
Q Consensus       366 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  445 (907)
                                                         .+.++--...           ......-.++|+|+++++..|+.|
T Consensus       254 -----------------------------------~v~if~g~~h-----------nfeknlL~cswsp~~~~i~ags~d  287 (338)
T KOG0265|consen  254 -----------------------------------CVKIFQGHIH-----------NFEKNLLKCSWSPNGTKITAGSAD  287 (338)
T ss_pred             -----------------------------------eEEEeecchh-----------hhhhhcceeeccCCCCcccccccc
Confidence                                               0111110000           011345567999999999999999


Q ss_pred             CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (907)
Q Consensus       446 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  502 (907)
                      ..+++||..+...+..++        +|.+.|.+++|+|...+|.+++.|.+|.+=.
T Consensus       288 r~vyvwd~~~r~~lyklp--------Gh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  288 RFVYVWDTTSRRILYKLP--------GHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             ceEEEeecccccEEEEcC--------CcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            999999999888877775        9999999999999999999999999987643

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1e-33  Score=282.32  Aligned_cols=288  Identities=20%  Similarity=0.332  Sum_probs=254.8

Q ss_pred             eeeeeeecccccCeEEEEEec-CCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCC
Q 002564          258 RLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (907)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg  336 (907)
                      +.+..+. +|...|+++.|.| .+.+|++++.|+.|++|++-..   .++++++.+|..+|..++|+++|..+++++.|+
T Consensus       205 k~~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  205 KLSHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             hheeecc-CCccccchhhhccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            4556666 9999999999999 8889999999999999998652   378999999999999999999999999999999


Q ss_pred             CEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceeccee
Q 002564          337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (907)
Q Consensus       337 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~  416 (907)
                      .+++||++++++...+..                                                              
T Consensus       281 ~lKlwDtETG~~~~~f~~--------------------------------------------------------------  298 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHL--------------------------------------------------------------  298 (503)
T ss_pred             eeeeeccccceEEEEEec--------------------------------------------------------------
Confidence            999999999988766543                                                              


Q ss_pred             eecCCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecC
Q 002564          417 LRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  495 (907)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  495 (907)
                             ...++|+.+.|++ +.+++|..|+.|+.||+++++.+..+.        .|-+.|..+.|-++|+.+++++.|
T Consensus       299 -------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--------~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  299 -------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--------RHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             -------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--------hhhhheeeeEEccCCceEeeeccC
Confidence                   2568899999999 899999999999999999999999986        899999999999999999999999


Q ss_pred             CeEEEEECCCCceeeeeecC--cceeEEEEeeCCCEEEEEeCCCeEEEEEcccc---eeEEEeecCC--CCeeeEEECCC
Q 002564          496 GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---RMVRKFEGHT--DRITDFCFSED  568 (907)
Q Consensus       496 g~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~---~~~~~~~~h~--~~I~~l~fspd  568 (907)
                      +.++||+...+-.+..+...  ....++..+|+++++++-+.|+.|.+|.+...   ...+.|.||.  +--..+.||||
T Consensus       364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD  443 (503)
T KOG0282|consen  364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD  443 (503)
T ss_pred             ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence            99999999988776655433  56778999999999999999999999986543   2345688886  44567899999


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCceeeEeeeC-CceEEEEECCC-CceEEEEEecCCeEEEee
Q 002564          569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPN-MDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       569 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~~v~~l~~spd-g~~lat~~~d~~~i~lW~  627 (907)
                      |++|++|+.||.+.+||..+-+++..+..| .+|..+.|+|. -..+||++.|| .|++|+
T Consensus       444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G-~Ikiwd  503 (503)
T KOG0282|consen  444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG-LIKIWD  503 (503)
T ss_pred             CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCc-eeEecC
Confidence            999999999999999999999999999888 56999999995 46799999999 599996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.8e-33  Score=255.11  Aligned_cols=290  Identities=19%  Similarity=0.329  Sum_probs=258.5

Q ss_pred             EEEcCCCCCEEEEEEcC---CCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEE
Q 002564          175 YEFKGWGSSISSCVSSP---ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (907)
Q Consensus       175 ~~~~~h~~~I~~l~~sp---~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i  251 (907)
                      .+..+|..+|..++|||   +|-+|++++.||.-.+-+-++|.-+.+|.+| ++.|.+.+...+.. ..|+++.|-+-++
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfegh-kgavw~~~l~~na~-~aasaaadftakv   85 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGH-KGAVWSATLNKNAT-RAASAAADFTAKV   85 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeecc-CcceeeeecCchhh-hhhhhcccchhhh
Confidence            45679999999999985   7889999999999999999999999999987 89999999998877 7889999999999


Q ss_pred             EECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (907)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s  331 (907)
                      ||.-+|..+..+.  |..-|.+++|+.|.++|++|+.+..+++||++..+..+.   ...+|.+.|..+.|....+.+++
T Consensus        86 w~a~tgdelhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~---E~~ghtg~Ir~v~wc~eD~~iLS  160 (334)
T KOG0278|consen   86 WDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK---EISGHTGGIRTVLWCHEDKCILS  160 (334)
T ss_pred             hhhhhhhhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch---hhcCCCCcceeEEEeccCceEEe
Confidence            9999999999996  888999999999999999999999999999988775544   45699999999999998899999


Q ss_pred             EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (907)
Q Consensus       332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~  411 (907)
                      ++.|++||+||.+++.....+                                                           
T Consensus       161 Sadd~tVRLWD~rTgt~v~sL-----------------------------------------------------------  181 (334)
T KOG0278|consen  161 SADDKTVRLWDHRTGTEVQSL-----------------------------------------------------------  181 (334)
T ss_pred             eccCCceEEEEeccCcEEEEE-----------------------------------------------------------
Confidence            999999999998776544432                                                           


Q ss_pred             ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEE
Q 002564          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (907)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  491 (907)
                                                                                  .-..+|+++.++++|++|.+
T Consensus       182 ------------------------------------------------------------~~~s~VtSlEvs~dG~ilTi  201 (334)
T KOG0278|consen  182 ------------------------------------------------------------EFNSPVTSLEVSQDGRILTI  201 (334)
T ss_pred             ------------------------------------------------------------ecCCCCcceeeccCCCEEEE
Confidence                                                                        23345778888888876655


Q ss_pred             EecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEe-ecCCCCeeeEEECCCCc
Q 002564          492 AGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGK  570 (907)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~-~~h~~~I~~l~fspdg~  570 (907)
                      +. .+.|++||..+..+++.++.+..|.+..++|+...+++|+.|+.++.||..++..+..+ ++|.++|.++.|+|||.
T Consensus       202 a~-gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE  280 (334)
T KOG0278|consen  202 AY-GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE  280 (334)
T ss_pred             ec-CceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence            44 57899999999999999999999999999999999999999999999999999998886 89999999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCce
Q 002564          571 WLLSSGMDGSLRIWDVILARQ  591 (907)
Q Consensus       571 ~l~s~s~Dg~I~vwd~~~~~~  591 (907)
                      ..++||.||+||+|....++.
T Consensus       281 ~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  281 LYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             eeeccCCCceEEEEEecCCCc
Confidence            999999999999999876543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.5e-31  Score=280.45  Aligned_cols=286  Identities=29%  Similarity=0.479  Sum_probs=246.8

Q ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 002564          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (907)
Q Consensus       175 ~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~  254 (907)
                      .++++|..+|++++|+|+++++++++.+|.|.+|++.+++....+..+ ...+..+.|+++++ .+++++.+|.|.+||+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~   80 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAASADGT-YLASGSSDKTIRLWDL   80 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-CcceeEEEECCCCC-EEEEEcCCCeEEEEEc
Confidence            457789999999999999999999999999999999988877777655 67889999999997 8999999999999999


Q ss_pred             CCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC
Q 002564          255 EKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ  334 (907)
Q Consensus       255 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~  334 (907)
                      .+++....+. .|...+.++.|++++.++++++.|+.+++|++...    .....+..|...+.++.|+|++.++++++.
T Consensus        81 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  155 (289)
T cd00200          81 ETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----KCLTTLRGHTDWVNSVAFSPDGTFVASSSQ  155 (289)
T ss_pred             CcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----EEEEEeccCCCcEEEEEEcCcCCEEEEEcC
Confidence            9988888887 89999999999999888988888999999998743    345555578888888888888777777777


Q ss_pred             CCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecc
Q 002564          335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE  414 (907)
Q Consensus       335 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~  414 (907)
                      |+.+++||+...                                                                    
T Consensus       156 ~~~i~i~d~~~~--------------------------------------------------------------------  167 (289)
T cd00200         156 DGTIKLWDLRTG--------------------------------------------------------------------  167 (289)
T ss_pred             CCcEEEEEcccc--------------------------------------------------------------------
Confidence            788888776422                                                                    


Q ss_pred             eeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec
Q 002564          415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY  494 (907)
Q Consensus       415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  494 (907)
                                                                .....+        ..|...+.++.++|+++.+++++.
T Consensus       168 ------------------------------------------~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~  197 (289)
T cd00200         168 ------------------------------------------KCVATL--------TGHTGEVNSVAFSPDGEKLLSSSS  197 (289)
T ss_pred             ------------------------------------------ccceeE--------ecCccccceEEECCCcCEEEEecC
Confidence                                                      112222        156678899999999988999998


Q ss_pred             CCeEEEEECCCCceeeee-ecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEE
Q 002564          495 HGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL  573 (907)
Q Consensus       495 dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~  573 (907)
                      ||.+++||+..++....+ .+...+.++.|+|++.++++++.++.|++||+.+++....+.+|...|.+++|+|++++|+
T Consensus       198 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  277 (289)
T cd00200         198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA  277 (289)
T ss_pred             CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEE
Confidence            999999999988888888 4557999999999988888888899999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEE
Q 002564          574 SSGMDGSLRIWD  585 (907)
Q Consensus       574 s~s~Dg~I~vwd  585 (907)
                      +++.|+.|++|+
T Consensus       278 ~~~~d~~i~iw~  289 (289)
T cd00200         278 SGSADGTIRIWD  289 (289)
T ss_pred             EecCCCeEEecC
Confidence            999999999996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=6.7e-33  Score=276.53  Aligned_cols=290  Identities=18%  Similarity=0.290  Sum_probs=243.3

Q ss_pred             CeEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEccC-CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCc
Q 002564          171 KKKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV  248 (907)
Q Consensus       171 ~~~~~~~~~h~~~I~~l~~sp-~~~~la~g~~dg~I~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~  248 (907)
                      .+.++++.+|...|+++.|.| .+.+|++++.|+.|+||++.. ++++++|.+| ..+|.+++|+++|. -+.+++.|+.
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k~Vrd~~~s~~g~-~fLS~sfD~~  281 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RKPVRDASFNNCGT-SFLSASFDRF  281 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-hhhhhhhhccccCC-eeeeeeccee
Confidence            456788999999999999999 899999999999999999987 7788888876 88999999999999 7889999999


Q ss_pred             EEEEECCCceeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC
Q 002564          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (907)
Q Consensus       249 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~  327 (907)
                      |++||+++|+++..+.  ....++++.|.|++ +.+++|+.|+.|+.||++.+    .+++....|-+.|..+.|.++|+
T Consensus       282 lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----kvvqeYd~hLg~i~~i~F~~~g~  355 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----KVVQEYDRHLGAILDITFVDEGR  355 (503)
T ss_pred             eeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----HHHHHHHhhhhheeeeEEccCCc
Confidence            9999999999999987  55678999999998 78999999999999999876    57788889999999999999999


Q ss_pred             EEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEe
Q 002564          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (907)
Q Consensus       328 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~  407 (907)
                      ++++++.|+++++|+...+-......                                                      
T Consensus       356 rFissSDdks~riWe~~~~v~ik~i~------------------------------------------------------  381 (503)
T KOG0282|consen  356 RFISSSDDKSVRIWENRIPVPIKNIA------------------------------------------------------  381 (503)
T ss_pred             eEeeeccCccEEEEEcCCCccchhhc------------------------------------------------------
Confidence            99999999999999976443221110                                                      


Q ss_pred             eeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC
Q 002564          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (907)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  487 (907)
                                                                                     ..+.....++..+|+++
T Consensus       382 ---------------------------------------------------------------~~~~hsmP~~~~~P~~~  398 (503)
T KOG0282|consen  382 ---------------------------------------------------------------DPEMHTMPCLTLHPNGK  398 (503)
T ss_pred             ---------------------------------------------------------------chhhccCcceecCCCCC
Confidence                                                                           01222344566667777


Q ss_pred             EEEEEecCCeEEEEECCCC---ceeeeeecC---cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCee
Q 002564          488 LMISAGYHGDIKVWDFKGR---DLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT  561 (907)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~---~~~~~~~~~---~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~  561 (907)
                      +++.-+.|+.|.++.+...   .....++.+   +--..+.|||||++|++|+.||.+.+||.++-+++..+++|.+++.
T Consensus       399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci  478 (503)
T KOG0282|consen  399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI  478 (503)
T ss_pred             eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceE
Confidence            7777777777777764432   112223332   5567889999999999999999999999999999999999999999


Q ss_pred             eEEECCCC-cEEEEEeCCCcEEEEE
Q 002564          562 DFCFSEDG-KWLLSSGMDGSLRIWD  585 (907)
Q Consensus       562 ~l~fspdg-~~l~s~s~Dg~I~vwd  585 (907)
                      .+.|+|.. ..+|+++.||.|++||
T Consensus       479 ~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  479 GVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEecCCCcceeEecccCceeEecC
Confidence            99999954 5799999999999996

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-28  Score=253.90  Aligned_cols=499  Identities=16%  Similarity=0.236  Sum_probs=353.2

Q ss_pred             cccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCC-CcccEEEEcCCCCCCEEEEEecCCcEEEEec
Q 002564           92 HSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDD-KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI  168 (907)
Q Consensus        92 h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~  168 (907)
                      -..+|.++++  ..+.||.+-.||.|.+|++...-..   ...+.++. ..+-..+|.+.   ..|.+.+.+|.|.-||+
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~---~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL---EPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWDL   97 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCcee---eEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEec
Confidence            3467999998  4678999999999999999885442   34444443 45566677755   47999999999999999


Q ss_pred             CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEee-cCCCCEEEEEEecCCCCEEEEEeCCC
Q 002564          169 STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSG  247 (907)
Q Consensus       169 ~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~dg~~~l~sg~~dg  247 (907)
                      .+++..+.+....+.|++++.+|.++.+++|+.||.+..++...++....... ..++.|.+++|.|++. .+++|+.||
T Consensus        98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg  176 (691)
T KOG2048|consen   98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDG  176 (691)
T ss_pred             ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEecccCc
Confidence            99999999999999999999999999999999999888888887776554432 2358999999999998 799999999


Q ss_pred             cEEEEECCCceeeeeee-------cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEE
Q 002564          248 VISIWNLEKRRLQSVIR-------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (907)
Q Consensus       248 ~I~iwd~~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (907)
                      .|++||..++..+....       .....-|+++.|..++ .+++|..-|+|++||...+    .++.....|.+.|.++
T Consensus       177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~L  251 (691)
T KOG2048|consen  177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLAL  251 (691)
T ss_pred             eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc----chhhhhhhhhcceeEE
Confidence            99999999997766322       1233458889988666 7999999999999987765    5677778899999999


Q ss_pred             EEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCc
Q 002564          321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (907)
Q Consensus       321 ~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  400 (907)
                      +..+++.+++++|.|+.+..+...+........             .....+...+.+++...       +.+..+..+.
T Consensus       252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~-------------~~r~~h~hdvrs~av~~-------~~l~sgG~d~  311 (691)
T KOG2048|consen  252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN-------------SRRDLHAHDVRSMAVIE-------NALISGGRDF  311 (691)
T ss_pred             EEcCCCCeEEEccCCCceEEEEecCCccceeee-------------ccccCCcccceeeeeec-------ceEEecceee
Confidence            999999999999999999988876654321110             01111111222222211       1233333333


Q ss_pred             eEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccc-cccCcCCcEEE
Q 002564          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER-SNYAHNGEVVG  479 (907)
Q Consensus       401 ~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~h~~~v~~  479 (907)
                      .+.+-.........+....    ..+-.+.....-.+++++--....+.+|.+.+....+.+...... ........|.+
T Consensus       312 ~l~i~~s~~~~~~~h~~~~----~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~  387 (691)
T KOG2048|consen  312 TLAICSSREFKNMDHRQKN----LFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISC  387 (691)
T ss_pred             EEEEccccccCchhhhccc----cccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceee
Confidence            3433333332222222111    112222223333456666666677888888776333222110000 01234467999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC------cceeEEEEeeCCCEEEEEe-CCCeEEEEEcccce--eE
Q 002564          480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALR--MV  550 (907)
Q Consensus       480 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~-~dg~I~v~d~~~~~--~~  550 (907)
                      .+.+|+|++++.+.- ..+++|.++....+......      -+...+.|+-|++.++.++ ....+.+++.++..  .+
T Consensus       388 ~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel  466 (691)
T KOG2048|consen  388 AAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKEL  466 (691)
T ss_pred             eccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhh
Confidence            999999999987764 56788887753333332222      4677888998888877777 77788888877653  22


Q ss_pred             EEee--cCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEe-eeCCceEEEEECC-CCceEEEEEecCCeEEEe
Q 002564          551 RKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-HVDVSITALSLSP-NMDVLATAHVDQNGVYLW  626 (907)
Q Consensus       551 ~~~~--~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~-~~~~~v~~l~~sp-dg~~lat~~~d~~~i~lW  626 (907)
                      ..+.  +-...|+.+..||||+|||+.+.+|.|.+|++.+++.-... +....++.++|+| +...|+.++.++ .++=+
T Consensus       467 ~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~n-Qv~ef  545 (691)
T KOG2048|consen  467 KSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNN-QVFEF  545 (691)
T ss_pred             hccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCC-eEEEE
Confidence            2222  34577999999999999999999999999999988765444 5567799999995 667888888888 69888


Q ss_pred             ec
Q 002564          627 VN  628 (907)
Q Consensus       627 ~~  628 (907)
                      |+
T Consensus       546 di  547 (691)
T KOG2048|consen  546 DI  547 (691)
T ss_pred             ec
Confidence            87

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.5e-30  Score=274.49  Aligned_cols=285  Identities=23%  Similarity=0.416  Sum_probs=250.9

Q ss_pred             eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEE
Q 002564          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (907)
Q Consensus       261 ~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~i  340 (907)
                      ..+. +|.++|.+++|+|+++++++++.||.+++|+++...    .......|...+..+.|+|+++.+++++.||.+++
T Consensus         3 ~~~~-~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i   77 (289)
T cd00200           3 RTLK-GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL   77 (289)
T ss_pred             hHhc-ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence            3455 899999999999999999999999999999987653    45566789999999999999999999999999999


Q ss_pred             EEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecC
Q 002564          341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC  420 (907)
Q Consensus       341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~  420 (907)
                      |++...+....+.                                                                   
T Consensus        78 ~~~~~~~~~~~~~-------------------------------------------------------------------   90 (289)
T cd00200          78 WDLETGECVRTLT-------------------------------------------------------------------   90 (289)
T ss_pred             EEcCcccceEEEe-------------------------------------------------------------------
Confidence            9987543322211                                                                   


Q ss_pred             CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEE
Q 002564          421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (907)
Q Consensus       421 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  500 (907)
                       .+...+.++.++++++++++++.+|.+.+|++.++.....+.        .|...+.+++++|++.++++++.||.|++
T Consensus        91 -~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          91 -GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR--------GHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             -ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec--------cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence             233679999999999999998889999999999887777664        78899999999999999988888999999


Q ss_pred             EECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCC
Q 002564          501 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  579 (907)
Q Consensus       501 wd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg  579 (907)
                      ||+.+++....+..+ ..+.++.|+|+++.+++++.++.|++||+.+++.+..+.+|...|.+++|+|++.++++++.||
T Consensus       162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence            999988888877665 5899999999999999999999999999999999999988999999999999999999988899


Q ss_pred             cEEEEEcCCCceeeEeeeCC-ceEEEEECCCCceEEEEEecCCeEEEee
Q 002564          580 SLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       580 ~I~vwd~~~~~~~~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~lW~  627 (907)
                      .|++||+.+++.+..+..+. .+.+++|+|++.+|++++.|+ .|++|+
T Consensus       242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iw~  289 (289)
T cd00200         242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG-TIRIWD  289 (289)
T ss_pred             cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC-eEEecC
Confidence            99999999999888887654 599999999999999999999 599996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.3e-31  Score=238.85  Aligned_cols=283  Identities=20%  Similarity=0.381  Sum_probs=243.0

Q ss_pred             EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEE
Q 002564          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (907)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~  296 (907)
                      ..+..+ +++|.++.|+-||+ +.++++.|.+|++|+...+.+++++. +|...|..++.+.|...+++|+.|..+.+||
T Consensus        11 ~~l~~~-qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   11 SILDCA-QGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             eeeccc-ccceEEEEEccCCC-EEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEE
Confidence            334444 78999999999999 88889999999999999999999999 9999999999999999999999999999999


Q ss_pred             ccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCce
Q 002564          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (907)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  376 (907)
                      +.++    +..+.+.+|.+.|+.++|+.+...+++|+-|.++++||-++....                           
T Consensus        88 V~TG----kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e---------------------------  136 (307)
T KOG0316|consen   88 VNTG----KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE---------------------------  136 (307)
T ss_pred             cccC----eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC---------------------------
Confidence            9877    678889999999999999999999999999999999997643211                           


Q ss_pred             eEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 002564          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  456 (907)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~  456 (907)
                                                                       +                              
T Consensus       137 -------------------------------------------------P------------------------------  137 (307)
T KOG0316|consen  137 -------------------------------------------------P------------------------------  137 (307)
T ss_pred             -------------------------------------------------c------------------------------
Confidence                                                             0                              


Q ss_pred             ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC
Q 002564          457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD  536 (907)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d  536 (907)
                        ++.+        ......|.++.+.  +..+++|+.||+++.||+..|++..-+ ...+|++++|+++++...+++-|
T Consensus       138 --iQil--------dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~  204 (307)
T KOG0316|consen  138 --IQIL--------DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLD  204 (307)
T ss_pred             --cchh--------hhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeecc
Confidence              1111        1334556666665  457889999999999999988765443 34799999999999999999999


Q ss_pred             CeEEEEEcccceeEEEeecCCCCe--eeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc--eEEEEECCCCce
Q 002564          537 LVIRLFDVVALRMVRKFEGHTDRI--TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDV  612 (907)
Q Consensus       537 g~I~v~d~~~~~~~~~~~~h~~~I--~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~--v~~l~~spdg~~  612 (907)
                      +++++.|-.+|+++..+.||.+.-  .+.+++.....+++||+||.|.+||+..+..+..+..++.  +++++++|.-..
T Consensus       205 stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~  284 (307)
T KOG0316|consen  205 STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD  284 (307)
T ss_pred             ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence            999999999999999999998653  4567888888999999999999999999999999988775  799999999888


Q ss_pred             EEEEEecCCeEEEee
Q 002564          613 LATAHVDQNGVYLWV  627 (907)
Q Consensus       613 lat~~~d~~~i~lW~  627 (907)
                      +.++...+  +..|.
T Consensus       285 f~~A~~~~--~~~~~  297 (307)
T KOG0316|consen  285 FITATGHG--DLFWY  297 (307)
T ss_pred             eeEecCCc--eecee
Confidence            88887654  77886

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7.6e-31  Score=253.81  Aligned_cols=305  Identities=21%  Similarity=0.359  Sum_probs=245.0

Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC---EEEEEcCCCcEEEEEccCC
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTT  300 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~~~d~~i~vw~~~~~  300 (907)
                      ...|.++...  ++ .+++|+.||.+++||. .|+...++. +|.++|.+++|.....   .+++++.|.++++|.++.+
T Consensus       105 dDWVSsv~~~--~~-~IltgsYDg~~riWd~-~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  105 DDWVSSVKGA--SK-WILTGSYDGTSRIWDL-KGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             hhhhhhhccc--Cc-eEEEeecCCeeEEEec-CCceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            5788888877  44 8999999999999995 688888888 9999999988865444   5999999999999999888


Q ss_pred             CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEee
Q 002564          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (907)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  380 (907)
                      ......+....||...|.+++..++|..+++|+.|.+|.+|+..+... .++......++.+....              
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~~~~~--------------  244 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKKQKRE--------------  244 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcc-ccccccchhhhhhhhhh--------------
Confidence            766666666679999999999999999999999999999999332211 11110000000000000              


Q ss_pred             ecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccce
Q 002564          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (907)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~  460 (907)
                                                            ..                                ...+.++.
T Consensus       245 --------------------------------------~~--------------------------------~~~r~P~v  254 (423)
T KOG0313|consen  245 --------------------------------------KE--------------------------------GGTRTPLV  254 (423)
T ss_pred             --------------------------------------hc--------------------------------ccccCceE
Confidence                                                  00                                00111122


Q ss_pred             eeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEE
Q 002564          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR  540 (907)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~  540 (907)
                      .+        .+|..+|.++.|++ ...+++++.|.+|+.||+.++....++.....+.++.++|..++||+|+.|..++
T Consensus       255 tl--------~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  255 TL--------EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             Ee--------cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCcee
Confidence            22        49999999999998 6789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccc---eeEEEeecCCCCeeeEEECCCCc-EEEEEeCCCcEEEEEcCCCc-eeeEeeeCCc-eEEEEECCCCceEE
Q 002564          541 LFDVVAL---RMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILAR-QIDAIHVDVS-ITALSLSPNMDVLA  614 (907)
Q Consensus       541 v~d~~~~---~~~~~~~~h~~~I~~l~fspdg~-~l~s~s~Dg~I~vwd~~~~~-~~~~~~~~~~-v~~l~~spdg~~la  614 (907)
                      +||.+++   -...+|.||.+.|.++.|+|... .|++++.|+++++||+++.+ ++..+..|.. |.++.|+ ++.+++
T Consensus       326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~Iv  404 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIV  404 (423)
T ss_pred             ecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEE
Confidence            9999876   34667999999999999999765 57899999999999999877 7877776654 9999997 567899


Q ss_pred             EEEecCCeEEEeecc
Q 002564          615 TAHVDQNGVYLWVNR  629 (907)
Q Consensus       615 t~~~d~~~i~lW~~~  629 (907)
                      +|+.|. .|+++.-.
T Consensus       405 SGGaD~-~l~i~~~~  418 (423)
T KOG0313|consen  405 SGGADN-KLRIFKGS  418 (423)
T ss_pred             eccCcc-eEEEeccc
Confidence            999999 59998743

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8e-31  Score=289.17  Aligned_cols=290  Identities=23%  Similarity=0.401  Sum_probs=253.5

Q ss_pred             EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEE
Q 002564          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM  294 (907)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~v  294 (907)
                      ..+..++...|.++.|+++|+ .+++++.++.+++|+..+.+  ....+. +|...|.+++|+|++.++++++.|++|++
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDDKTLRI  229 (456)
T ss_pred             eeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCCceEEE
Confidence            344444467899999999999 79999999999999998777  666665 89999999999999999999999999999


Q ss_pred             EEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccC
Q 002564          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (907)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (907)
                      ||+..   ....++.+.+|...|++++|+|+|+.+++|+.|++|++||+.+++....+.                     
T Consensus       230 wd~~~---~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~---------------------  285 (456)
T KOG0266|consen  230 WDLKD---DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK---------------------  285 (456)
T ss_pred             eeccC---CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---------------------
Confidence            99822   226788889999999999999999999999999999999998765554432                     


Q ss_pred             ceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 002564          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (907)
Q Consensus       375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~  454 (907)
                                                                     +|...|++++|+++|+++++++.||.|++||+.
T Consensus       286 -----------------------------------------------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~  318 (456)
T KOG0266|consen  286 -----------------------------------------------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE  318 (456)
T ss_pred             -----------------------------------------------ccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence                                                           466899999999999999999999999999999


Q ss_pred             CCcc--ceeeeccccccccCcCC--cEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-c---ceeEEEEeeC
Q 002564          455 SGIS--RGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-C---SLVKIVYHRV  526 (907)
Q Consensus       455 ~~~~--~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~---~i~~~~~s~~  526 (907)
                      ++..  ...+.        .+..  .++.+.|+|+++++++++.|+.+++||+..+.....+..+ .   .+.+...++.
T Consensus       319 ~~~~~~~~~~~--------~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (456)
T KOG0266|consen  319 TGSKLCLKLLS--------GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG  390 (456)
T ss_pred             CCceeeeeccc--------CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence            9984  34443        4433  5999999999999999999999999999999888887665 2   3445566788


Q ss_pred             CCEEEEEeCCCeEEEEEcccceeEEEeecC-CCCeeeEEECCCCcEEEEEe--CCCcEEEEEcC
Q 002564          527 NGLLATVADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSG--MDGSLRIWDVI  587 (907)
Q Consensus       527 ~~~la~~~~dg~I~v~d~~~~~~~~~~~~h-~~~I~~l~fspdg~~l~s~s--~Dg~I~vwd~~  587 (907)
                      +.++++|+.|+.|++||+.++..+..+.+| ...+..+.++|...++++++  .|+.+++|...
T Consensus       391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999999999999999999999999999999 89999999999999999998  78999999754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2e-32  Score=260.70  Aligned_cols=277  Identities=22%  Similarity=0.358  Sum_probs=207.6

Q ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564          180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (907)
Q Consensus       180 h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~  259 (907)
                      ....|.|+.+..  ..+++|..|++|+|||..+-.++..+.+| .+.|.|+.|.  .+ ++++|++|.+|++||.+++++
T Consensus       196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GH-tGSVLCLqyd--~r-viisGSSDsTvrvWDv~tge~  269 (499)
T KOG0281|consen  196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGH-TGSVLCLQYD--ER-VIVSGSSDSTVRVWDVNTGEP  269 (499)
T ss_pred             cCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcC-CCcEEeeecc--ce-EEEecCCCceEEEEeccCCch
Confidence            356899998854  46999999999999999988888888876 8999999995  44 899999999999999999999


Q ss_pred             eeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEE
Q 002564          260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  339 (907)
Q Consensus       260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~  339 (907)
                      +.++- +|...|..+.|+.+  ++++++.|.++.+||+..+. ...+.+.+.||...|+.+.|+  .+++++++.|++|+
T Consensus       270 l~tli-hHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTik  343 (499)
T KOG0281|consen  270 LNTLI-HHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK  343 (499)
T ss_pred             hhHHh-hhcceeEEEEEeCC--EEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence            99998 89999999999744  89999999999999998776 445667788999999999996  55999999999999


Q ss_pred             EEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeec
Q 002564          340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  419 (907)
Q Consensus       340 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~  419 (907)
                      +|++.+...++.+.                                                                  
T Consensus       344 vW~~st~efvRtl~------------------------------------------------------------------  357 (499)
T KOG0281|consen  344 VWSTSTCEFVRTLN------------------------------------------------------------------  357 (499)
T ss_pred             EEeccceeeehhhh------------------------------------------------------------------
Confidence            99987665544432                                                                  


Q ss_pred             CCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEE
Q 002564          420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK  499 (907)
Q Consensus       420 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~  499 (907)
                                                                          +|...|-|+.+  .++++++|+.|.+|+
T Consensus       358 ----------------------------------------------------gHkRGIAClQY--r~rlvVSGSSDntIR  383 (499)
T KOG0281|consen  358 ----------------------------------------------------GHKRGIACLQY--RDRLVVSGSSDNTIR  383 (499)
T ss_pred             ----------------------------------------------------cccccceehhc--cCeEEEecCCCceEE
Confidence                                                                34444444333  234445555555555


Q ss_pred             EEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccce---------eEEEeecCCCCeeeEEECCCC
Q 002564          500 VWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR---------MVRKFEGHTDRITDFCFSEDG  569 (907)
Q Consensus       500 iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~---------~~~~~~~h~~~I~~l~fspdg  569 (907)
                      +||+..|.+++.++++ .-|.++.|.  .+.+++|..||+|+|||+.++.         ++..+..|+++|..+.|  |.
T Consensus       384 lwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~  459 (499)
T KOG0281|consen  384 LWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DE  459 (499)
T ss_pred             EEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cc
Confidence            5555555554444443 334444442  3444555555555555544332         34556679999999999  66


Q ss_pred             cEEEEEeCCCcEEEEEcCCCcee
Q 002564          570 KWLLSSGMDGSLRIWDVILARQI  592 (907)
Q Consensus       570 ~~l~s~s~Dg~I~vwd~~~~~~~  592 (907)
                      ..+++++.|.+|-|||...+..-
T Consensus       460 fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  460 FQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             eEEEeccCCCeEEEEEcCCCCcc
Confidence            78999999999999999876543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=8.3e-30  Score=303.60  Aligned_cols=301  Identities=15%  Similarity=0.272  Sum_probs=236.5

Q ss_pred             CCcEEEEecCCCeEEEEE-----cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCC----c----eEEEEeecCCCC
Q 002564          160 EGSLQLWNISTKKKLYEF-----KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD----E----ELVTFTHSMRGA  226 (907)
Q Consensus       160 dg~i~iwd~~~~~~~~~~-----~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~----~----~~~~~~~~~~~~  226 (907)
                      +|.+++|+..+.+....+     ..|...|.+++|+|+++++|+|+.|+.|+||+....    .    ....+..  ...
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~  534 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSK  534 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCc
Confidence            667888988776655443     358999999999999999999999999999997532    1    1222222  468


Q ss_pred             EEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEec-CCCEEEEEcCCCcEEEEEccCCCCCcc
Q 002564          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPR  305 (907)
Q Consensus       227 v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~  305 (907)
                      +.+++|++....+|++++.||.|++||+.+++.+..+. +|.+.|++++|+| ++.+|++|+.|+.|++||+...    .
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----~  609 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----V  609 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----c
Confidence            99999998644489999999999999999999988887 8999999999997 7889999999999999998754    3


Q ss_pred             eeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccc
Q 002564          306 LLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (907)
Q Consensus       306 ~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  384 (907)
                      .+..+..+ ..+.++.|.+ +|.++++|+.||.|++||++....                                    
T Consensus       610 ~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~------------------------------------  652 (793)
T PLN00181        610 SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL------------------------------------  652 (793)
T ss_pred             EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc------------------------------------
Confidence            34444433 5788888854 688888888888888888643210                                    


Q ss_pred             ccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeec
Q 002564          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  464 (907)
Q Consensus       385 ~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~  464 (907)
                                                                                               ....+  
T Consensus       653 -------------------------------------------------------------------------~~~~~--  657 (793)
T PLN00181        653 -------------------------------------------------------------------------PLCTM--  657 (793)
T ss_pred             -------------------------------------------------------------------------cceEe--
Confidence                                                                                     00111  


Q ss_pred             cccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC------ceeeeeecC-cceeEEEEeeCCCEEEEEeCCC
Q 002564          465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR------DLKSRWEVG-CSLVKIVYHRVNGLLATVADDL  537 (907)
Q Consensus       465 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg  537 (907)
                            .+|...|.++.|. ++.++++++.|++|++||+..+      ..+..+..+ ..+..++|++++.+|++|+.|+
T Consensus       658 ------~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~  730 (793)
T PLN00181        658 ------IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN  730 (793)
T ss_pred             ------cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence                  2688888888886 6678888889999999988642      445555544 6788999999999999999999


Q ss_pred             eEEEEEcccceeEEEe-------------ecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEc
Q 002564          538 VIRLFDVVALRMVRKF-------------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       538 ~I~v~d~~~~~~~~~~-------------~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~  586 (907)
                      .|++|+......+..+             ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus       731 ~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        731 EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            9999998765433222             234567999999999999999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=2e-30  Score=285.99  Aligned_cols=288  Identities=24%  Similarity=0.409  Sum_probs=248.7

Q ss_pred             CCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe--EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEc-cCC
Q 002564          137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV-RYD  213 (907)
Q Consensus       137 ~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~-~~~  213 (907)
                      ...+..+.|+|++  +.+++++.++.+++|+..+++  ..+.+.+|...|..++|+|+++++++|+.|++|+|||+ ..+
T Consensus       159 ~~sv~~~~fs~~g--~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~  236 (456)
T KOG0266|consen  159 CPSVTCVDFSPDG--RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG  236 (456)
T ss_pred             cCceEEEEEcCCC--CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence            3445567899999  789999999999999998888  78888999999999999999999999999999999999 455


Q ss_pred             ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEE
Q 002564          214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK  293 (907)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~  293 (907)
                      ..++++..| ...|++++|+|+|+ ++++|+.|++|+|||++++++...+. +|...|++++|++++++|++++.|+.|+
T Consensus       237 ~~~~~l~gH-~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d~~~l~s~s~d~~i~  313 (456)
T KOG0266|consen  237 RNLKTLKGH-STYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPDGNLLVSASYDGTIR  313 (456)
T ss_pred             eEEEEecCC-CCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCCCCEEEEcCCCccEE
Confidence            788888855 88999999999996 99999999999999999999999999 9999999999999999999999999999


Q ss_pred             EEEccCCCCCcceeEeccCCCCC--CeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhc
Q 002564          294 MWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  371 (907)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (907)
                      +||+......  +...+.++..+  +++++|+|++.++++++.|+.+++|++..............              
T Consensus       314 vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~--------------  377 (456)
T KOG0266|consen  314 VWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN--------------  377 (456)
T ss_pred             EEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC--------------
Confidence            9998766321  34555565555  99999999999999999999999999987766555432100              


Q ss_pred             ccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 002564          372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF  451 (907)
Q Consensus       372 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~  451 (907)
                                                                         ....+.+...++.|.++++|+.|+.|++|
T Consensus       378 ---------------------------------------------------~~~~~~~~~~~~~~~~i~sg~~d~~v~~~  406 (456)
T KOG0266|consen  378 ---------------------------------------------------LVRCIFSPTLSTGGKLIYSGSEDGSVYVW  406 (456)
T ss_pred             ---------------------------------------------------cceeEecccccCCCCeEEEEeCCceEEEE
Confidence                                                               00234445558899999999999999999


Q ss_pred             eCCCCccceeeeccccccccCc-CCcEEEEEEcCCCCEEEEEe--cCCeEEEEECC
Q 002564          452 NLQSGISRGSYLDMSERSNYAH-NGEVVGVACDSTNTLMISAG--YHGDIKVWDFK  504 (907)
Q Consensus       452 d~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~--~dg~i~iwd~~  504 (907)
                      ++.++..+..+.        +| ...+..+.+++...++++++  .|+.+++|...
T Consensus       407 ~~~s~~~~~~l~--------~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  407 DSSSGGILQRLE--------GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eCCccchhhhhc--------CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            999988888875        88 89999999999999999998  78999999754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=4.3e-30  Score=232.38  Aligned_cols=284  Identities=15%  Similarity=0.216  Sum_probs=246.2

Q ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEE
Q 002564          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (907)
Q Consensus       173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iw  252 (907)
                      ..+.+..+.++|.++.|+-+|+|.++++.|.+|++||...+..++++..| ...|..++.+.|+. -+++|+.|..+.+|
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-G~EVlD~~~s~Dns-kf~s~GgDk~v~vw   86 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-GHEVLDAALSSDNS-KFASCGGDKAVQVW   86 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-Cceeeecccccccc-ccccCCCCceEEEE
Confidence            45677889999999999999999999999999999999999999999887 77899999999988 79999999999999


Q ss_pred             ECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEE
Q 002564          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (907)
Q Consensus       253 d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~  332 (907)
                      |+++|+....+. +|.+.|+.+.|+.+...+++|+.|.++++||.+....  ..++.+......|.++...  +..|+.|
T Consensus        87 DV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~--~heIvaG  161 (307)
T KOG0316|consen   87 DVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVA--EHEIVAG  161 (307)
T ss_pred             EcccCeeeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCC--CccchhhhhcCceeEEEec--ccEEEee
Confidence            999999999999 9999999999999999999999999999998876644  5567777788889998886  5689999


Q ss_pred             eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeecee
Q 002564          333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL  412 (907)
Q Consensus       333 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~  412 (907)
                      +.||++|.||++.++.....                                                            
T Consensus       162 S~DGtvRtydiR~G~l~sDy------------------------------------------------------------  181 (307)
T KOG0316|consen  162 SVDGTVRTYDIRKGTLSSDY------------------------------------------------------------  181 (307)
T ss_pred             ccCCcEEEEEeecceeehhh------------------------------------------------------------
Confidence            99999999999876543322                                                            


Q ss_pred             cceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEE--EEEEcCCCCEEE
Q 002564          413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV--GVACDSTNTLMI  490 (907)
Q Consensus       413 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~s~~~~~l~  490 (907)
                                ...+|++++++++|+..++++-++++++.|-.+|+.+..+.        +|...-.  ..+++.....++
T Consensus       182 ----------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk--------Ghkn~eykldc~l~qsdthV~  243 (307)
T KOG0316|consen  182 ----------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK--------GHKNMEYKLDCCLNQSDTHVF  243 (307)
T ss_pred             ----------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc--------ccccceeeeeeeecccceeEE
Confidence                      12789999999999999999999999999999999999986        8876543  345566667899


Q ss_pred             EEecCCeEEEEECCCCceeeeeecCcc--eeEEEEeeCCCEEEEEeCCCeEEEE
Q 002564          491 SAGYHGDIKVWDFKGRDLKSRWEVGCS--LVKIVYHRVNGLLATVADDLVIRLF  542 (907)
Q Consensus       491 s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~~~~~s~~~~~la~~~~dg~I~v~  542 (907)
                      +|+.||.|.+||+.....+..+..++.  +..+.++|.-..++++.. +.+..|
T Consensus       244 sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~  296 (307)
T KOG0316|consen  244 SGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW  296 (307)
T ss_pred             eccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence            999999999999999999988887743  688999997766666654 344444

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=8.5e-32  Score=253.98  Aligned_cols=291  Identities=22%  Similarity=0.339  Sum_probs=249.8

Q ss_pred             eeeEecCCCcc-cEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEc--------CCCCCEEEEEEcCCCCEEEEEe
Q 002564          130 VGHVKLDDKFT-PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK--------GWGSSISSCVSSPALDVVAVGC  200 (907)
Q Consensus       130 ~~~~~~~~~~~-~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--------~h~~~I~~l~~sp~~~~la~g~  200 (907)
                      .+++++....- -++.|+|++  +++++|+.||-|.+||..+|+....++        -+..+|.|+.||.|...||+|+
T Consensus       205 ~r~IKFg~KSh~EcA~FSPDg--qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs  282 (508)
T KOG0275|consen  205 ARSIKFGQKSHVECARFSPDG--QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS  282 (508)
T ss_pred             hhheecccccchhheeeCCCC--ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC
Confidence            45666665443 445599999  999999999999999999998765543        4688999999999999999999


Q ss_pred             cCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCC
Q 002564          201 SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE  280 (907)
Q Consensus       201 ~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~  280 (907)
                      .||.|++|.+.+|.+++.|...|...|+|+.|+.|+. .+.+++.|.++++.-+.+|+++..++ +|.+.|+...|.++|
T Consensus       283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG  360 (508)
T KOG0275|consen  283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDG  360 (508)
T ss_pred             cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCC
Confidence            9999999999999999999987889999999999998 78899999999999999999999999 999999999999999


Q ss_pred             CEEEEEcCCCcEEEEEccCCCCCcceeEec--cCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhh
Q 002564          281 PVLMSASADNSIKMWIFDTTDGDPRLLRFR--SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV  357 (907)
Q Consensus       281 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  357 (907)
                      ..+++++.||+|++|+..+..    ++.++  .+...+|.++...| +...++.|...+++.+.++. ++..+.++.+. 
T Consensus       361 ~~iisaSsDgtvkvW~~Ktte----C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk-  434 (508)
T KOG0275|consen  361 HHIISASSDGTVKVWHGKTTE----CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK-  434 (508)
T ss_pred             CeEEEecCCccEEEecCcchh----hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC-
Confidence            999999999999999876553    33322  34566889998888 67789999999999998864 22333322211 


Q ss_pred             hHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCC
Q 002564          358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  437 (907)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  437 (907)
                                                                                      ...+...++++||.|.
T Consensus       435 ----------------------------------------------------------------REgGdFi~~~lSpkGe  450 (508)
T KOG0275|consen  435 ----------------------------------------------------------------REGGDFINAILSPKGE  450 (508)
T ss_pred             ----------------------------------------------------------------ccCCceEEEEecCCCc
Confidence                                                                            1126677889999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (907)
Q Consensus       438 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  502 (907)
                      ++.+.+.|+.++.|+..+|.....+.        -|...|.+++-+|..+.+++-+.||.+++|.
T Consensus       451 wiYcigED~vlYCF~~~sG~LE~tl~--------VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  451 WIYCIGEDGVLYCFSVLSGKLERTLP--------VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEEccCcEEEEEEeecCceeeeee--------cccccccccccCcccchhhhhcccchhhhcC
Confidence            99999999999999999999988886        8999999999999999999999999999994

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=9.2e-32  Score=256.26  Aligned_cols=275  Identities=16%  Similarity=0.257  Sum_probs=232.3

Q ss_pred             CCcceEEEEEecCeEEEEE-cCeEEEEeCCe--eEEEEcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCcccccee
Q 002564           55 LPKKIRALASYRDYTFAAY-GNHIAVVKRAH--QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVG  131 (907)
Q Consensus        55 ~~~~I~~la~~~~~~~~a~-g~~I~vw~~~~--~~~~~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~  131 (907)
                      ....|.|+.+..+...-+. .++|.+||...  +++.+.||++.|.|+.++...|+||+.|.+|+|||+++++.    ++
T Consensus       196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~----l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEP----LN  271 (499)
T ss_pred             cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCch----hh
Confidence            3567888888655433333 34499999765  36669999999999999999999999999999999999999    66


Q ss_pred             eEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Q 002564          132 HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVH  208 (907)
Q Consensus       132 ~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iw  208 (907)
                      ++-.|...+....|+.    +++++++.|.++.+||+.+..   +.+.+.||.+.|+.+.|+.  +++++++.|.+|++|
T Consensus       272 tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW  345 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW  345 (499)
T ss_pred             HHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEE
Confidence            6666777777777765    579999999999999997654   3355789999999999975  499999999999999


Q ss_pred             EccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC
Q 002564          209 NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA  288 (907)
Q Consensus       209 d~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~  288 (907)
                      ++.+++.+.++.+| +..|.|+.+.  |+ ++++|++|.+|++||++.|.++..+. +|..-|.++.|.  .+.+++|+.
T Consensus       346 ~~st~efvRtl~gH-kRGIAClQYr--~r-lvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRFd--~krIVSGaY  418 (499)
T KOG0281|consen  346 STSTCEFVRTLNGH-KRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFD--NKRIVSGAY  418 (499)
T ss_pred             eccceeeehhhhcc-cccceehhcc--Ce-EEEecCCCceEEEEeccccHHHHHHh-chHHhhhheeec--Cceeeeccc
Confidence            99999999999887 7779999884  56 99999999999999999999999999 999999999994  668999999


Q ss_pred             CCcEEEEEccCCCCC-----cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceeccc
Q 002564          289 DNSIKMWIFDTTDGD-----PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  348 (907)
Q Consensus       289 d~~i~vw~~~~~~~~-----~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~  348 (907)
                      ||.|++||+......     ..++.....|++.|..+.|.  ...+++++.|.+|.+||...+..
T Consensus       419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCc
Confidence            999999999765432     12456667899999999995  56899999999999999876543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2.4e-29  Score=299.66  Aligned_cols=303  Identities=12%  Similarity=0.178  Sum_probs=244.0

Q ss_pred             CCcEEEEECCCceeeeeeec----ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC----cceeEeccCCCCCC
Q 002564          246 SGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD----PRLLRFRSGHSAPP  317 (907)
Q Consensus       246 dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~----~~~~~~~~~h~~~v  317 (907)
                      +|.+++|+..+.+....+..    .|.+.|.+++|+|++.++++|+.|+.|++|++......    ....... .+...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence            67788898877665444332    48999999999999999999999999999987542111    0112222 234678


Q ss_pred             eEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEe
Q 002564          318 LCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (907)
Q Consensus       318 ~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  396 (907)
                      .+++|++ ++.+|++++.||.|++||+.+++....+                                            
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~--------------------------------------------  571 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM--------------------------------------------  571 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe--------------------------------------------
Confidence            9999987 5789999999999999998754432221                                            


Q ss_pred             eCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCC
Q 002564          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  475 (907)
Q Consensus       397 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  475 (907)
                                              .+|...|.+++|+| +++++++|+.||.|++||+.++.....+.         +..
T Consensus       572 ------------------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---------~~~  618 (793)
T PLN00181        572 ------------------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK---------TKA  618 (793)
T ss_pred             ------------------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---------cCC
Confidence                                    24568899999996 78999999999999999999888777663         335


Q ss_pred             cEEEEEEc-CCCCEEEEEecCCeEEEEECCCCc-eeeeee-cCcceeEEEEeeCCCEEEEEeCCCeEEEEEccc------
Q 002564          476 EVVGVACD-STNTLMISAGYHGDIKVWDFKGRD-LKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA------  546 (907)
Q Consensus       476 ~v~~l~~s-~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~------  546 (907)
                      .|.++.|+ +++.++++|+.||.|++||+.+.+ ....+. +...|.++.|. ++.++++++.|+.|++||+..      
T Consensus       619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~  697 (793)
T PLN00181        619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN  697 (793)
T ss_pred             CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC
Confidence            78999995 578999999999999999998765 344443 44789999997 688999999999999999974      


Q ss_pred             ceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEee--------------eCCceEEEEECCCCce
Q 002564          547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH--------------VDVSITALSLSPNMDV  612 (907)
Q Consensus       547 ~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~--------------~~~~v~~l~~spdg~~  612 (907)
                      .+++..+.+|...++.++|+|++++|++|+.|+.|++|+...+..+..+.              +...|.+++|+|++..
T Consensus       698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence            36788999999999999999999999999999999999987665443322              1224999999999999


Q ss_pred             EEEEEecCCeEEEeec
Q 002564          613 LATAHVDQNGVYLWVN  628 (907)
Q Consensus       613 lat~~~d~~~i~lW~~  628 (907)
                      |++++.+| .|++|++
T Consensus       778 lva~~~dG-~I~i~~~  792 (793)
T PLN00181        778 LVAANSTG-NIKILEM  792 (793)
T ss_pred             EEEecCCC-cEEEEec
Confidence            99999999 5999985

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=3.9e-31  Score=249.54  Aligned_cols=285  Identities=21%  Similarity=0.331  Sum_probs=239.5

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEee-------cCCCCEEEEEEecCCCCEEEEEeCCCcEEE
Q 002564          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-------SMRGAVTALAFSSDGQPLLASGASSGVISI  251 (907)
Q Consensus       179 ~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~-------~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i  251 (907)
                      +..+.+.|..|||||++|++|+.||-|.+||..+|+....+.-       -+..+|.|++|+.|.. ++|+|+.||.|++
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEE
Confidence            3466788999999999999999999999999999986554431       1357899999999999 9999999999999


Q ss_pred             EECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (907)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s  331 (907)
                      |.+.+|.++..+..+|...|+++.|+.|+..+++++.|.++++.-+..+    ++++.+.||+..|+...|.+||.++++
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----K~LKEfrGHsSyvn~a~ft~dG~~iis  365 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----KCLKEFRGHSSYVNEATFTDDGHHIIS  365 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc----hhHHHhcCccccccceEEcCCCCeEEE
Confidence            9999999999999899999999999999999999999999999966554    678889999999999999999999999


Q ss_pred             EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (907)
Q Consensus       332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~  411 (907)
                      ++.||++++|+..+..+...+..                                                         
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~---------------------------------------------------------  388 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKP---------------------------------------------------------  388 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccC---------------------------------------------------------
Confidence            99999999999876655444321                                                         


Q ss_pred             ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEE
Q 002564          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMI  490 (907)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~  490 (907)
                                                                                 .+...+|..+..-|.+ ..++
T Consensus       389 -----------------------------------------------------------~~~d~~vnsv~~~PKnpeh~i  409 (508)
T KOG0275|consen  389 -----------------------------------------------------------LGTDYPVNSVILLPKNPEHFI  409 (508)
T ss_pred             -----------------------------------------------------------CCCcccceeEEEcCCCCceEE
Confidence                                                                       1222334444444433 4566


Q ss_pred             EEecCCeEEEEECCCCceeeeeecC----cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEEC
Q 002564          491 SAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS  566 (907)
Q Consensus       491 s~~~dg~i~iwd~~~~~~~~~~~~~----~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fs  566 (907)
                      +|...+++.+.++. |+.++.+..+    +...+.+.+|.|.++.+.++|+.++-|.+.+|++.+++.-|...|..++-+
T Consensus       410 VCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH  488 (508)
T KOG0275|consen  410 VCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHH  488 (508)
T ss_pred             EEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccC
Confidence            66666777777654 3445555332    567788999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEE
Q 002564          567 EDGKWLLSSGMDGSLRIWD  585 (907)
Q Consensus       567 pdg~~l~s~s~Dg~I~vwd  585 (907)
                      |..+.|++-+.||.+++|.
T Consensus       489 PHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  489 PHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccchhhhhcccchhhhcC
Confidence            9999999999999999995

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-29  Score=233.53  Aligned_cols=292  Identities=13%  Similarity=0.194  Sum_probs=233.1

Q ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 002564          176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE  255 (907)
Q Consensus       176 ~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~  255 (907)
                      .+++|..+++.+.++.+|++|.+++.|....+|-..+|+.+.++.+| .+.|.|+....+.+ .+++|+.|.++++||++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GH-tGavW~~Did~~s~-~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGH-TGAVWCCDIDWDSK-HLITGSADQTAKLWDVE   82 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCC-CceEEEEEecCCcc-eeeeccccceeEEEEcC
Confidence            36789999999999999999999999999999999999999999987 89999999999988 89999999999999999


Q ss_pred             CceeeeeeecccccCeEEEEEecCCCEEEEEcC-----CCcEEEEEccCCCC---CcceeEeccCCCCCCeEEEEecCCC
Q 002564          256 KRRLQSVIREAHDNAIISLHFFANEPVLMSASA-----DNSIKMWIFDTTDG---DPRLLRFRSGHSAPPLCIRFYANGR  327 (907)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-----d~~i~vw~~~~~~~---~~~~~~~~~~h~~~v~~i~~~~~g~  327 (907)
                      +|+.+..++  ...+|..+.|+++|++++.+..     .+.|.++++.....   ...+......+...++.+-|.|-++
T Consensus        83 tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~  160 (327)
T KOG0643|consen   83 TGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE  160 (327)
T ss_pred             CCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence            999999997  6789999999999998777654     35678887764321   0111222333445555555555555


Q ss_pred             EEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEe
Q 002564          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (907)
Q Consensus       328 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~  407 (907)
                      +|++|..||.|..||+                                                                
T Consensus       161 ~ii~Ghe~G~is~~da----------------------------------------------------------------  176 (327)
T KOG0643|consen  161 TIIAGHEDGSISIYDA----------------------------------------------------------------  176 (327)
T ss_pred             EEEEecCCCcEEEEEc----------------------------------------------------------------
Confidence            5555555555555554                                                                


Q ss_pred             eeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC
Q 002564          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (907)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  487 (907)
                                                                    .+|.....-.       ..|...|+.+.++++..
T Consensus       177 ----------------------------------------------~~g~~~v~s~-------~~h~~~Ind~q~s~d~T  203 (327)
T KOG0643|consen  177 ----------------------------------------------RTGKELVDSD-------EEHSSKINDLQFSRDRT  203 (327)
T ss_pred             ----------------------------------------------ccCceeeech-------hhhccccccccccCCcc
Confidence                                                          4443222221       37888999999999999


Q ss_pred             EEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCe--------------EEEEEcccceeEEEe
Q 002564          488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV--------------IRLFDVVALRMVRKF  553 (907)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~--------------I~v~d~~~~~~~~~~  553 (907)
                      ++++++.|.+-++||+.+-+.++++....|+++.+++|....++.|+.-..              .++|++-..+.+..+
T Consensus       204 ~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv  283 (327)
T KOG0643|consen  204 YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV  283 (327)
T ss_pred             eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999998887777653221              223333333557778


Q ss_pred             ecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCC
Q 002564          554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (907)
Q Consensus       554 ~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~  588 (907)
                      +||-++|++++|+|+|+-.++|+.||.||+.-...
T Consensus       284 kGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  284 KGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            99999999999999999999999999999986654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.1e-29  Score=233.56  Aligned_cols=276  Identities=17%  Similarity=0.208  Sum_probs=245.5

Q ss_pred             ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEce
Q 002564          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~  344 (907)
                      +|...|.+++|..+|..|++++.|+++++|+++...  ...-....+|.+.|-.++|+| ....+++++.|.++++||++
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r   95 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR   95 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence            789999999999999999999999999999988662  223344568999999999998 67799999999999999999


Q ss_pred             ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCC
Q 002564          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (907)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~  424 (907)
                      ..++......                                                                     .
T Consensus        96 ~~k~~~~i~~---------------------------------------------------------------------~  106 (313)
T KOG1407|consen   96 SGKCTARIET---------------------------------------------------------------------K  106 (313)
T ss_pred             cCcEEEEeec---------------------------------------------------------------------c
Confidence            8877655432                                                                     1


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  504 (907)
                      ..-..++|+|+|+++++|..|..|..+|..+.+.....         .....+..++|+.++.+++.....|+|.|..+.
T Consensus       107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~---------~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp  177 (313)
T KOG1407|consen  107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE---------QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP  177 (313)
T ss_pred             CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh---------cccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence            34456789999999999999999999999988777665         355678889999888888777778999999999


Q ss_pred             CCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEE
Q 002564          505 GRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI  583 (907)
Q Consensus       505 ~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~v  583 (907)
                      .-+++..++.+ ....|+.|+|+|+++|+|+.|..+.+||++..-+++.+..+.-+|..+.||.||++||+||+|..|-|
T Consensus       178 sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  178 SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEe
Confidence            99999888765 78889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCC
Q 002564          584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN  621 (907)
Q Consensus       584 wd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~  621 (907)
                      =++++|..+..++..++...++|+|...+||.++.|..
T Consensus       258 A~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~  295 (313)
T KOG1407|consen  258 AEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKD  295 (313)
T ss_pred             EecccCCeEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence            99999999999999999999999999999999998763

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=5.4e-29  Score=229.75  Aligned_cols=232  Identities=19%  Similarity=0.272  Sum_probs=203.5

Q ss_pred             EcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEE
Q 002564           89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (907)
Q Consensus        89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iw  166 (907)
                      +.||+.+++.+.+  +|+.|+||+.|.+..||--..++.    +.++.+|.+.+++|.+..+.  +++++|+.|.++++|
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer----lGty~GHtGavW~~Did~~s--~~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER----LGTYDGHTGAVWCCDIDWDS--KHLITGSADQTAKLW   79 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce----eeeecCCCceEEEEEecCCc--ceeeeccccceeEEE
Confidence            7899999999998  699999999999999999989999    89999999999999999999  899999999999999


Q ss_pred             ecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEEcc-------CCceEEEEeecCCCCEEEEEEec
Q 002564          167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVR-------YDEELVTFTHSMRGAVTALAFSS  234 (907)
Q Consensus       167 d~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d-----g~I~iwd~~-------~~~~~~~~~~~~~~~v~~l~fs~  234 (907)
                      |+++|+++..++. ..+|..+.|+++|++++....+     +.|.++|++       ..++...+..+ ...++.+-|.|
T Consensus        80 Dv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~Wg~  157 (327)
T KOG0643|consen   80 DVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSALWGP  157 (327)
T ss_pred             EcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeeeecc
Confidence            9999999999987 7899999999999988877543     779999998       44567777766 68999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCC
Q 002564          235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (907)
Q Consensus       235 dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (907)
                      -++ .+++|..+|.|.+||+++|+....-...|...|+.++++++..++++++.|.+-++||+.+-    .+++++ ...
T Consensus       158 l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl----~v~Kty-~te  231 (327)
T KOG0643|consen  158 LGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL----EVLKTY-TTE  231 (327)
T ss_pred             cCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce----eeEEEe-eec
Confidence            999 89999999999999999985544443489999999999999999999999999999998765    344444 356


Q ss_pred             CCCeEEEEecCCCEEEEEeC
Q 002564          315 APPLCIRFYANGRHILSAGQ  334 (907)
Q Consensus       315 ~~v~~i~~~~~g~~l~s~~~  334 (907)
                      .||++.+++|...+++.|+.
T Consensus       232 ~PvN~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  232 RPVNTAAISPLLDHVILGGG  251 (327)
T ss_pred             ccccceecccccceEEecCC
Confidence            79999999996666666553

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.6e-29  Score=230.65  Aligned_cols=280  Identities=16%  Similarity=0.258  Sum_probs=246.1

Q ss_pred             ccccCeEEEEEec---CCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEE
Q 002564          266 AHDNAIISLHFFA---NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (907)
Q Consensus       266 ~h~~~V~~l~~~~---~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd  342 (907)
                      +|..+|..++|+|   +|-+|++++.|+.-.+-+=+++    .-+.++.||.+.|++.....+....++++.|-+-++||
T Consensus        12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg----dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen   12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG----DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC----CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            8999999999986   7889999999998777644443    45778899999999999998888889999999999999


Q ss_pred             ceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCC
Q 002564          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (907)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~  422 (907)
                      ..++.....+                                                                     .
T Consensus        88 a~tgdelhsf---------------------------------------------------------------------~   98 (334)
T KOG0278|consen   88 AVTGDELHSF---------------------------------------------------------------------E   98 (334)
T ss_pred             hhhhhhhhhh---------------------------------------------------------------------h
Confidence            8877665554                                                                     2


Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (907)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  502 (907)
                      |...|.+++|+.|.+++++|+.+..+++||++.......-       ..+|.+.|..+.|....+.++++..|++||+||
T Consensus        99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E-------~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD  171 (334)
T KOG0278|consen   99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE-------ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWD  171 (334)
T ss_pred             hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh-------hcCCCCcceeEEEeccCceEEeeccCCceEEEE
Confidence            3467899999999999999999999999999876543322       259999999999999889999999999999999


Q ss_pred             CCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEE
Q 002564          503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR  582 (907)
Q Consensus       503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~  582 (907)
                      ..++..++++....+++++.++++|++|.++. .+.|.+||..+..+++.+.- .-.|.+...+|+...+++|+.|..++
T Consensus       172 ~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~  249 (334)
T KOG0278|consen  172 HRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVY  249 (334)
T ss_pred             eccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEE
Confidence            99999999999999999999999999887764 57899999999999888774 35689999999999999999999999


Q ss_pred             EEEcCCCceeeEe-e-eCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564          583 IWDVILARQIDAI-H-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       583 vwd~~~~~~~~~~-~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (907)
                      .||..+|..+..+ + ++.+|.++.|+|||..-|+++.|| +|+||..
T Consensus       250 kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG-TirlWQt  296 (334)
T KOG0278|consen  250 KFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG-TIRLWQT  296 (334)
T ss_pred             EEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc-eEEEEEe
Confidence            9999999999886 3 466799999999999999999999 7999985

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=4e-29  Score=234.97  Aligned_cols=291  Identities=21%  Similarity=0.327  Sum_probs=242.0

Q ss_pred             ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC------------c------eeeeeeecccccCeEEEEEecCCCE
Q 002564          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK------------R------RLQSVIREAHDNAIISLHFFANEPV  282 (907)
Q Consensus       221 ~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~------------~------~~~~~~~~~h~~~V~~l~~~~~~~~  282 (907)
                      ..|++++.+.+|++||. ++|+|+.|..|+|.|++.            +      -.+.++. .|...|+++.|+|....
T Consensus       109 t~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRETI  186 (430)
T ss_pred             eecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhhe
Confidence            34589999999999999 999999999999999861            1      2345555 79999999999999999


Q ss_pred             EEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHh
Q 002564          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (907)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  362 (907)
                      |++++.|++|+++|+...... +..+.+ ....+|.++.|+|.|.+|+.|..-..+++||+.+-++-..           
T Consensus       187 LiS~srD~tvKlFDfsK~saK-rA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs-----------  253 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAK-RAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS-----------  253 (430)
T ss_pred             EEeccCCCeEEEEecccHHHH-HHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee-----------
Confidence            999999999999999765432 222222 3467899999999999999999999999999876543221           


Q ss_pred             hccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEE
Q 002564          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  442 (907)
Q Consensus       363 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  442 (907)
                                                                            ..+..+|...|+++.+++.|+..++|
T Consensus       254 ------------------------------------------------------anPd~qht~ai~~V~Ys~t~~lYvTa  279 (430)
T KOG0640|consen  254 ------------------------------------------------------ANPDDQHTGAITQVRYSSTGSLYVTA  279 (430)
T ss_pred             ------------------------------------------------------cCcccccccceeEEEecCCccEEEEe
Confidence                                                                  11334677999999999999999999


Q ss_pred             eCCCcEEEEeCCCCccceeeeccccccccCcCC-cEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCc-----
Q 002564          443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC-----  516 (907)
Q Consensus       443 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----  516 (907)
                      +.||.|++||--+++++..+.       .+|.+ .|.+..|..+++++++.|.|..+++|.+.+++++..+...+     
T Consensus       280 SkDG~IklwDGVS~rCv~t~~-------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq  352 (430)
T KOG0640|consen  280 SKDGAIKLWDGVSNRCVRTIG-------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ  352 (430)
T ss_pred             ccCCcEEeeccccHHHHHHHH-------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch
Confidence            999999999999999999987       57875 69999999999999999999999999999999999886641     


Q ss_pred             -ceeEEEEeeCCCEEEEEeC-CCeEEEEEcccceeEEEee-cCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcC
Q 002564          517 -SLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (907)
Q Consensus       517 -~i~~~~~s~~~~~la~~~~-dg~I~v~d~~~~~~~~~~~-~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~  587 (907)
                       --+...|.....+++.-.+ .+.+.-||.++...+..+. ||++.+..+.-||.+.-+++++.|..+|+|--.
T Consensus       353 ~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  353 KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence             2344556666677666543 4688999999887666554 899999999999999999999999999999643

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=2.2e-28  Score=236.88  Aligned_cols=278  Identities=19%  Similarity=0.314  Sum_probs=236.2

Q ss_pred             CCcceEEEEEecCeEEEEE-cCeEEEEeC-CeeEEEEcccccceEEEEe---e--CCEEEEEecCCcEEEEecCCCCccc
Q 002564           55 LPKKIRALASYRDYTFAAY-GNHIAVVKR-AHQVATWSRHSAKVNLLLL---F--GEHILSIDIDGNMFIWAFKGIEENL  127 (907)
Q Consensus        55 ~~~~I~~la~~~~~~~~a~-g~~I~vw~~-~~~~~~~~~h~~~V~~l~~---~--g~~l~s~~~dg~v~vWd~~~~~~~~  127 (907)
                      |+..|.++...+...+..+ ++.+++|+. |+...++.||.++|.++++   +  ...+++++.|.++++|.++.++...
T Consensus       104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~  183 (423)
T KOG0313|consen  104 HDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV  183 (423)
T ss_pred             chhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh
Confidence            6777888877766666544 777999995 7778889999999998885   1  3469999999999999999888755


Q ss_pred             cceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCC-------------------------CeEEEEEcCCCC
Q 002564          128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST-------------------------KKKLYEFKGWGS  182 (907)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~-------------------------~~~~~~~~~h~~  182 (907)
                      ..+..-.+|...+-++...+++  .++++|+.|..|.+|+..+                         +.++.++.||..
T Consensus       184 ~~~~~~~GHk~~V~sVsv~~sg--tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~  261 (423)
T KOG0313|consen  184 KALKVCRGHKRSVDSVSVDSSG--TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE  261 (423)
T ss_pred             hHHhHhcccccceeEEEecCCC--CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence            5555556888888888899999  8999999999999999321                         235677899999


Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc--e-e
Q 002564          183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--R-L  259 (907)
Q Consensus       183 ~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~--~-~  259 (907)
                      +|.++.|++ ...+.+++.|.+|+.||+.++..+.++...  ..+.|+..+|... +|++|+.|..|++||.+++  . .
T Consensus       262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v  337 (423)
T KOG0313|consen  262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVV  337 (423)
T ss_pred             ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC--cceeEeecccccc-eeeecCCCCceeecCCCCCCCcee
Confidence            999999999 568999999999999999999999988875  7899999999888 9999999999999999876  3 3


Q ss_pred             eeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCE
Q 002564          260 QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  338 (907)
Q Consensus       260 ~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i  338 (907)
                      ..++. +|.+.|.++.|+|.. ..|++++.||++++||++...+   .+..+.+|...|.++.|. ++..+++||.|.+|
T Consensus       338 ~~s~~-gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~---plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l  412 (423)
T KOG0313|consen  338 SQSLI-GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA---PLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKL  412 (423)
T ss_pred             EEeee-cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC---cceeeccCCceEEEEecc-CCceEEeccCcceE
Confidence            34454 999999999999965 5788999999999999987652   466778999999999998 56699999999999


Q ss_pred             EEEEc
Q 002564          339 RLFSV  343 (907)
Q Consensus       339 ~iwd~  343 (907)
                      +++.-
T Consensus       413 ~i~~~  417 (423)
T KOG0313|consen  413 RIFKG  417 (423)
T ss_pred             EEecc
Confidence            99864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.6e-27  Score=222.24  Aligned_cols=281  Identities=15%  Similarity=0.210  Sum_probs=239.1

Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC--CCcEEEEEccCCC
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTD  301 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--d~~i~vw~~~~~~  301 (907)
                      .+.|.++.|+++|. +|++++.|..+++||..+++.+.++. .+...+..++|......++.++.  |.+|+..++... 
T Consensus        14 ~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN-   90 (311)
T KOG1446|consen   14 NGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN-   90 (311)
T ss_pred             CCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecC-
Confidence            67899999999999 88888999999999999999999998 77788999999988888887776  899999988766 


Q ss_pred             CCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeee
Q 002564          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (907)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  381 (907)
                         +.++.+.||...|.+++.+|-+..+++++.|++|++||++..++...+..                           
T Consensus        91 ---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---------------------------  140 (311)
T KOG1446|consen   91 ---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---------------------------  140 (311)
T ss_pred             ---ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---------------------------
Confidence               78999999999999999999889999999999999999986655443321                           


Q ss_pred             cccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ccc
Q 002564          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG--ISR  459 (907)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~--~~~  459 (907)
                                                                 ..-..+|++|.|-++|++...+.|++||+++-  .+.
T Consensus       141 -------------------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF  177 (311)
T KOG1446|consen  141 -------------------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF  177 (311)
T ss_pred             -------------------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence                                                       34456799999999999999999999999764  223


Q ss_pred             eeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCc----ceeEEEEeeCCCEEEEEeC
Q 002564          460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC----SLVKIVYHRVNGLLATVAD  535 (907)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~i~~~~~s~~~~~la~~~~  535 (907)
                      ..+..     ..+.....+.+.|+|+|++++.+...+.+.+.|.-+|..+.++....    -....+|+||++++.+|++
T Consensus       178 ~tf~i-----~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  178 TTFSI-----TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD  252 (311)
T ss_pred             eeEcc-----CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence            33321     12456789999999999999999999999999999999888887652    2257889999999999999


Q ss_pred             CCeEEEEEcccceeEEEeec-CCCCeeeEEECCCCcEEEEEeCCCcEEEEEcC
Q 002564          536 DLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (907)
Q Consensus       536 dg~I~v~d~~~~~~~~~~~~-h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~  587 (907)
                      ||+|.+|+++++..+..+.+ +.+++.++.|+|.-..++++  +..+.+|=..
T Consensus       253 dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~  303 (311)
T KOG1446|consen  253 DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD  303 (311)
T ss_pred             CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence            99999999999999999999 78999999999976666655  5668888544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=4e-29  Score=244.47  Aligned_cols=286  Identities=22%  Similarity=0.379  Sum_probs=248.0

Q ss_pred             eeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCE
Q 002564          259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  338 (907)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i  338 (907)
                      ....+. .|.+.+..+.|.++...|++|+.|..|++|+.....  .....++.|..++|+++.|.++++++++++.|+.+
T Consensus       167 ~~~~ld-~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~  243 (459)
T KOG0288|consen  167 ALFVLD-AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL  243 (459)
T ss_pred             hhhhhh-ccccccceeEEccCcchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence            334454 899999999999998899999999999999876654  45677888899999999999999999999999999


Q ss_pred             EEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeee
Q 002564          339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  418 (907)
Q Consensus       339 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~  418 (907)
                      ++|++...+....+                                                                  
T Consensus       244 r~Wnvd~~r~~~TL------------------------------------------------------------------  257 (459)
T KOG0288|consen  244 RLWNVDSLRLRHTL------------------------------------------------------------------  257 (459)
T ss_pred             eeeeccchhhhhhh------------------------------------------------------------------
Confidence            99998765544333                                                                  


Q ss_pred             cCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeE
Q 002564          419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  498 (907)
Q Consensus       419 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  498 (907)
                        .+|...|+++.+......++.|+.|.+|+.||++...+..++.         ....+..|+.+  ...++++-.|+.|
T Consensus       258 --sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l---------~~S~cnDI~~~--~~~~~SgH~Dkkv  324 (459)
T KOG0288|consen  258 --SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL---------PGSQCNDIVCS--ISDVISGHFDKKV  324 (459)
T ss_pred             --cccccceeeehhhccccceeeccccchhhhhhhhhhheecccc---------ccccccceEec--ceeeeecccccce
Confidence              2577899999998888889999999999999999987777653         34456666665  4568888899999


Q ss_pred             EEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecC----CCCeeeEEECCCCcEEEE
Q 002564          499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLLS  574 (907)
Q Consensus       499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h----~~~I~~l~fspdg~~l~s  574 (907)
                      ++||..+..+....+.++.|+++..++++..+.+.+.|.++.++|+.+......+.+.    ....+.+.|||++.|+++
T Consensus       325 RfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA  404 (459)
T KOG0288|consen  325 RFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA  404 (459)
T ss_pred             EEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeee
Confidence            9999999999999999999999999999999999999999999999999888887642    234889999999999999


Q ss_pred             EeCCCcEEEEEcCCCceeeEeeeCC---ceEEEEECCCCceEEEEEecCCeEEEee
Q 002564          575 SGMDGSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       575 ~s~Dg~I~vwd~~~~~~~~~~~~~~---~v~~l~~spdg~~lat~~~d~~~i~lW~  627 (907)
                      ||.||.|+||++.+|++...+....   .|++++|+|.|..|++++.++ .+.+|.
T Consensus       405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~-~v~lW~  459 (459)
T KOG0288|consen  405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK-AVTLWT  459 (459)
T ss_pred             ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc-ceEecC
Confidence            9999999999999999998886532   499999999999999999988 699994

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.6e-28  Score=243.43  Aligned_cols=277  Identities=21%  Similarity=0.306  Sum_probs=234.5

Q ss_pred             CCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564          181 GSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (907)
Q Consensus       181 ~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~  259 (907)
                      ...|++++|+|... -+|+++. -.+.||+..+.....++... +..++++.|..||+ ++++|+..|.|+|||..+...
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srF-k~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~i  102 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRF-KDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVI  102 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhh-ccceeEEEeecCCe-EEEccCCcCcEEEeccccHHH
Confidence            57899999999654 3444443 57999999988777766654 67899999999999 999999999999999888778


Q ss_pred             eeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCC
Q 002564          260 QSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRA  337 (907)
Q Consensus       260 ~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~  337 (907)
                      +..+. +|+.+|..+.|+|.++ .+++|+.|+.+++||+++..    ....+.+|++.|.|.+|+| ++..++|||.||.
T Consensus       103 LR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~  177 (487)
T KOG0310|consen  103 LRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----VQAELSGHTDYVRCGDISPANDHIVVTGSYDGK  177 (487)
T ss_pred             HHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----EEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence            88888 9999999999999654 77788889999999988763    3557789999999999999 6678999999999


Q ss_pred             EEEEEceecc-cceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceeccee
Q 002564          338 FRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI  416 (907)
Q Consensus       338 i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~  416 (907)
                      |++||++... ...++                                                                
T Consensus       178 vrl~DtR~~~~~v~el----------------------------------------------------------------  193 (487)
T KOG0310|consen  178 VRLWDTRSLTSRVVEL----------------------------------------------------------------  193 (487)
T ss_pred             EEEEEeccCCceeEEe----------------------------------------------------------------
Confidence            9999998652 22222                                                                


Q ss_pred             eecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCC
Q 002564          417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  496 (907)
Q Consensus       417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  496 (907)
                           .|..+|..+.+-|.|..+++++ ...|++||+.+|.......       ..|...|+|+.+..++..|++++-|+
T Consensus       194 -----nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~-------~~H~KtVTcL~l~s~~~rLlS~sLD~  260 (487)
T KOG0310|consen  194 -----NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSM-------FNHNKTVTCLRLASDSTRLLSGSLDR  260 (487)
T ss_pred             -----cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhh-------hcccceEEEEEeecCCceEeeccccc
Confidence                 3458899999999999988875 4579999999554433332       25999999999999999999999999


Q ss_pred             eEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEE
Q 002564          497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF  542 (907)
Q Consensus       497 ~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~  542 (907)
                      .+++||+.+-+.+..+...++|.+++.+|+++.+++|..||.+.+-
T Consensus       261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence            9999999999999999999999999999999999999999987765

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6.8e-28  Score=252.32  Aligned_cols=278  Identities=20%  Similarity=0.339  Sum_probs=239.3

Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 002564          185 SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR  264 (907)
Q Consensus       185 ~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~  264 (907)
                      .-+.|+ ..+.||+|.. ..|.+|+..+++.......+ ...|+++.|+++|. +|++|..+|.|.|||..+.+.+..+.
T Consensus       181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~~~  256 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRTLR  256 (484)
T ss_pred             hHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccccc
Confidence            345677 4567888775 57999999999866666554 78999999999999 99999999999999999999999998


Q ss_pred             cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564          265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       265 ~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (907)
                      ..|...|-+++|.  +..+.+|+.|+.|..+|+.......   ..+.+|...|..+.|++|+.++++|+.|+.+.+||..
T Consensus       257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~  331 (484)
T KOG0305|consen  257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL  331 (484)
T ss_pred             CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence            4499999999998  6689999999999999998775332   2477999999999999999999999999999999862


Q ss_pred             ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCC
Q 002564          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (907)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~  424 (907)
                      ....                                                                            
T Consensus       332 ~~~p----------------------------------------------------------------------------  335 (484)
T KOG0305|consen  332 SPEP----------------------------------------------------------------------------  335 (484)
T ss_pred             Cccc----------------------------------------------------------------------------
Confidence            2111                                                                            


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC-CCEEEEEe--cCCeEEEE
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAG--YHGDIKVW  501 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~--~dg~i~iw  501 (907)
                                                        ...+        ..|...|..++|+|- ..+||+|+  .|++|++|
T Consensus       336 ----------------------------------~~~~--------~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw  373 (484)
T KOG0305|consen  336 ----------------------------------KFTF--------TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW  373 (484)
T ss_pred             ----------------------------------cEEE--------eccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence                                              1111        379999999999994 46888876  79999999


Q ss_pred             ECCCCceeeeeecCcceeEEEEeeCCCEEEEE--eCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCC
Q 002564          502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  579 (907)
Q Consensus       502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~--~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg  579 (907)
                      |..+++.+..+.....|..+.|++..+-++++  ..++.|.||+..+.+.+..+.+|..+|..+++||||..+++|+.|.
T Consensus       374 n~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE  453 (484)
T KOG0305|consen  374 NTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADE  453 (484)
T ss_pred             EcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccC
Confidence            99999999999999999999999998766654  4567999999999999999999999999999999999999999999


Q ss_pred             cEEEEEcCCC
Q 002564          580 SLRIWDVILA  589 (907)
Q Consensus       580 ~I~vwd~~~~  589 (907)
                      ++++|++-..
T Consensus       454 Tlrfw~~f~~  463 (484)
T KOG0305|consen  454 TLRFWNLFDE  463 (484)
T ss_pred             cEEeccccCC
Confidence            9999998764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=4.3e-29  Score=244.24  Aligned_cols=276  Identities=19%  Similarity=0.344  Sum_probs=239.4

Q ss_pred             CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564          223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (907)
Q Consensus       223 ~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (907)
                      |.+.+..+.|-++.. .|++|+.|..|++|+...++  .+.++. +..++|+++.|.+++.++++++.|+.+++|+++..
T Consensus       174 h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~  251 (459)
T KOG0288|consen  174 HEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL  251 (459)
T ss_pred             cccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence            478999999999866 79999999999999988776  677776 78889999999999999999999999999998765


Q ss_pred             CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEee
Q 002564          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (907)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  380 (907)
                          +...++.||++.|+++.|......+++|+.|.+++.||+....+.+++-.                          
T Consensus       252 ----r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--------------------------  301 (459)
T KOG0288|consen  252 ----RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP--------------------------  301 (459)
T ss_pred             ----hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc--------------------------
Confidence                77888899999999999998766799999999999999987555444211                          


Q ss_pred             ecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccce
Q 002564          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (907)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~  460 (907)
                                                                 .+.+..++.+  +..+++|..|+.|++||.+++....
T Consensus       302 -------------------------------------------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~  336 (459)
T KOG0288|consen  302 -------------------------------------------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR  336 (459)
T ss_pred             -------------------------------------------cccccceEec--ceeeeecccccceEEEeccCCceee
Confidence                                                       0223333333  5678889999999999999999888


Q ss_pred             eeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-----cceeEEEEeeCCCEEEEEeC
Q 002564          461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVNGLLATVAD  535 (907)
Q Consensus       461 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~i~~~~~s~~~~~la~~~~  535 (907)
                      ..+        .+ +.|+++..++++..+.+++.|.++.+.|+.+......+...     +..+.+.|||++.|+|+|+.
T Consensus       337 sv~--------~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~  407 (459)
T KOG0288|consen  337 SVP--------LG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA  407 (459)
T ss_pred             Eee--------cC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence            874        34 59999999999999999999999999999999888877543     66899999999999999999


Q ss_pred             CCeEEEEEcccceeEEEeecCCC--CeeeEEECCCCcEEEEEeCCCcEEEE
Q 002564          536 DLVIRLFDVVALRMVRKFEGHTD--RITDFCFSEDGKWLLSSGMDGSLRIW  584 (907)
Q Consensus       536 dg~I~v~d~~~~~~~~~~~~h~~--~I~~l~fspdg~~l~s~s~Dg~I~vw  584 (907)
                      ||.|+||++.++++...+.....  .|++++|+|.|.+|++++.++.+.+|
T Consensus       408 dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  408 DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            99999999999999998886554  49999999999999999999999999

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=5.9e-27  Score=215.70  Aligned_cols=280  Identities=14%  Similarity=0.168  Sum_probs=239.3

Q ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEe-ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEE
Q 002564          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWN  253 (907)
Q Consensus       175 ~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~-~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd  253 (907)
                      +.+.+|.+.|.+++|+.+|..|++|+.|+++.+|++..++...... .+|.+.|-.++|.|....++++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4567899999999999999999999999999999999876554443 334678999999998888999999999999999


Q ss_pred             CCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEe
Q 002564          254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG  333 (907)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~  333 (907)
                      .+.+++...+.  ..+.=.-+.|+|+|.+++.++.|..|...|....    +.... ......+..++|+-++.+++...
T Consensus        94 ~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~----~~~~~-~~~~~e~ne~~w~~~nd~Fflt~  166 (313)
T KOG1407|consen   94 IRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTY----KIVNE-EQFKFEVNEISWNNSNDLFFLTN  166 (313)
T ss_pred             eccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEeccc----ceeeh-hcccceeeeeeecCCCCEEEEec
Confidence            99999999887  4444467889999999999999999999987654    22222 23455678899998888888888


Q ss_pred             CCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceec
Q 002564          334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  413 (907)
Q Consensus       334 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~  413 (907)
                      ..|.|.|.....-+....+                                                             
T Consensus       167 GlG~v~ILsypsLkpv~si-------------------------------------------------------------  185 (313)
T KOG1407|consen  167 GLGCVEILSYPSLKPVQSI-------------------------------------------------------------  185 (313)
T ss_pred             CCceEEEEecccccccccc-------------------------------------------------------------
Confidence            8899999887543333322                                                             


Q ss_pred             ceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe
Q 002564          414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG  493 (907)
Q Consensus       414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  493 (907)
                             ..|+....|+.|+|+|+++++|+.|..+.+||++.-.+.+.+.        -+.-+|..+.|+.+|++|++++
T Consensus       186 -------~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is--------RldwpVRTlSFS~dg~~lASaS  250 (313)
T KOG1407|consen  186 -------KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS--------RLDWPVRTLSFSHDGRMLASAS  250 (313)
T ss_pred             -------ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec--------cccCceEEEEeccCcceeeccC
Confidence                   2466788999999999999999999999999999998888885        7889999999999999999999


Q ss_pred             cCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCC
Q 002564          494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL  537 (907)
Q Consensus       494 ~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg  537 (907)
                      .|..|-|=+.++|..+..+++.++...++|+|...+||.+++|.
T Consensus       251 EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  251 EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCC
Confidence            99999999999999999999999999999999999999998763

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.5e-27  Score=248.17  Aligned_cols=269  Identities=18%  Similarity=0.229  Sum_probs=234.2

Q ss_pred             CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEE
Q 002564          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (907)
                      +.|++|.. ..|++|+..+++.......+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+..+|...|-+++
T Consensus       189 n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~la  267 (484)
T KOG0305|consen  189 NVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLA  267 (484)
T ss_pred             CeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEe
Confidence            56777754 46999999999877777666899999999999999999999999999999999999999986799999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCceeeee-eecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEec
Q 002564          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSV-IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR  310 (907)
Q Consensus       232 fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~  310 (907)
                      |.  +. .+.+|+.++.|..+|++..+.... +. +|...|..+.|++|+.++++|+.|+.+.|||....    .....+
T Consensus       268 W~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~----~p~~~~  339 (484)
T KOG0305|consen  268 WN--SS-VLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP----EPKFTF  339 (484)
T ss_pred             cc--Cc-eEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECCCCCeeccCCCccceEeccCCCc----cccEEE
Confidence            98  33 799999999999999998876666 55 89999999999999999999999999999987433    456667


Q ss_pred             cCCCCCCeEEEEec-CCCEEEEEe--CCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccc
Q 002564          311 SGHSAPPLCIRFYA-NGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  387 (907)
Q Consensus       311 ~~h~~~v~~i~~~~-~g~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  387 (907)
                      ..|.+.|..++|+| ....||+|+  .|+.|++||+.++.....+..                                 
T Consensus       340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt---------------------------------  386 (484)
T KOG0305|consen  340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT---------------------------------  386 (484)
T ss_pred             eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc---------------------------------
Confidence            79999999999999 667888875  699999999987665544322                                 


Q ss_pred             cccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCccceeeecc
Q 002564          388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISRGSYLDM  465 (907)
Q Consensus       388 ~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g~~dg~i~i~d~~~~~~~~~~~~~  465 (907)
                                                          ...|.++.|++..+-+++  |+.++.|.+|+..+......+.  
T Consensus       387 ------------------------------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~--  428 (484)
T KOG0305|consen  387 ------------------------------------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL--  428 (484)
T ss_pred             ------------------------------------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--
Confidence                                                278999999999977665  5677899999999988877775  


Q ss_pred             ccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 002564          466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  506 (907)
Q Consensus       466 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  506 (907)
                            +|...|..++++|||..+++|+.|.++++|++-..
T Consensus       429 ------gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  429 ------GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ------CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence                  99999999999999999999999999999998764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=2.1e-27  Score=223.41  Aligned_cols=292  Identities=19%  Similarity=0.320  Sum_probs=243.0

Q ss_pred             ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC--------------CCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT--------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (907)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~--------------~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s  331 (907)
                      .|.+++.+.+|++||.++++|+.|.+|++.|++..              .....+++++..|..+|+++.|+|....|++
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS  189 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS  189 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence            79999999999999999999999999999998621              1123567888999999999999999999999


Q ss_pred             EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (907)
Q Consensus       332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~  411 (907)
                      ++.|++|++||+......+.+..                                                         
T Consensus       190 ~srD~tvKlFDfsK~saKrA~K~---------------------------------------------------------  212 (430)
T KOG0640|consen  190 GSRDNTVKLFDFSKTSAKRAFKV---------------------------------------------------------  212 (430)
T ss_pred             ccCCCeEEEEecccHHHHHHHHH---------------------------------------------------------
Confidence            99999999999864332211100                                                         


Q ss_pred             ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEE
Q 002564          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (907)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  491 (907)
                           +    ....++.++.|+|.|.++++|+.-..+++||+.+-+....-.     ....|.+.|+++.+++.+++.++
T Consensus       213 -----~----qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-----Pd~qht~ai~~V~Ys~t~~lYvT  278 (430)
T KOG0640|consen  213 -----F----QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-----PDDQHTGAITQVRYSSTGSLYVT  278 (430)
T ss_pred             -----h----hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-----cccccccceeEEEecCCccEEEE
Confidence                 0    112789999999999999999999999999999877655443     12579999999999999999999


Q ss_pred             EecCCeEEEEECCCCceeeeeec---CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCC--C---CeeeE
Q 002564          492 AGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT--D---RITDF  563 (907)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~--~---~I~~l  563 (907)
                      ++.||.|++||--+++++.++..   +..|.+..|..+++++.+.+.|..+++|.+.+++++..+.|-.  +   --+..
T Consensus       279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA  358 (430)
T KOG0640|consen  279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQA  358 (430)
T ss_pred             eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhh
Confidence            99999999999999999988853   3789999999999999999999999999999999999987641  2   23455


Q ss_pred             EECCCCcEEEEEeC-CCcEEEEEcCCCceeeEe--eeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          564 CFSEDGKWLLSSGM-DGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       564 ~fspdg~~l~s~s~-Dg~I~vwd~~~~~~~~~~--~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                      .|+....|++.-.+ .+.+.-||.+++..+..+  .+.+++..+.-||.+.-+.|++.|-+ +++|--+
T Consensus       359 vFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r-aRFWyrr  426 (430)
T KOG0640|consen  359 VFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR-ARFWYRR  426 (430)
T ss_pred             hhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce-eeeeeec
Confidence            68888888876553 467999999998766544  44556999999999999999999984 9999744

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=5.6e-27  Score=256.34  Aligned_cols=281  Identities=22%  Similarity=0.377  Sum_probs=242.0

Q ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEE-EeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce
Q 002564          180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (907)
Q Consensus       180 h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~-~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~  258 (907)
                      +...+.+..|.  .+++++++.+++|++|+..++..+.. +.+| .+.|.+++|..-+. ++++|+.|.++++||..+|.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH-~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGH-FGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCC-CCCceeEEEecCCC-EEEEEecCCcEEeEecCCCc
Confidence            56778888888  56899999999999999999999888 6655 89999999987444 99999999999999999999


Q ss_pred             eeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCE
Q 002564          259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  338 (907)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i  338 (907)
                      +...+. +|.+.|.++...+  ..+++|+.|.+|++|+++.+    ..+..+.+|.++|.++..+  +.++++|+.|++|
T Consensus       283 C~~~l~-gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~----~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  283 CTHSLQ-GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG----ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV  353 (537)
T ss_pred             EEEEec-CCCceEEEEEccC--ceEeeccCCceEEEEeccCc----ceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence            999999 9999999998754  47888999999999999854    6788888899999999997  6789999999888


Q ss_pred             EEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeee
Q 002564          339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  418 (907)
Q Consensus       339 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~  418 (907)
                      ++|++.+.+..                                                                     
T Consensus       354 ~VW~~~~~~cl---------------------------------------------------------------------  364 (537)
T KOG0274|consen  354 KVWDPRTGKCL---------------------------------------------------------------------  364 (537)
T ss_pred             EEEEhhhceee---------------------------------------------------------------------
Confidence            88887543322                                                                     


Q ss_pred             cCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeE
Q 002564          419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  498 (907)
Q Consensus       419 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i  498 (907)
                                                               ..+        .+|...|.++.+.+. ..+++|+.|++|
T Consensus       365 -----------------------------------------~sl--------~gH~~~V~sl~~~~~-~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  365 -----------------------------------------KSL--------SGHTGRVYSLIVDSE-NRLLSGSLDTTI  394 (537)
T ss_pred             -----------------------------------------eee--------cCCcceEEEEEecCc-ceEEeeeeccce
Confidence                                                     222        389999999988876 799999999999


Q ss_pred             EEEECCCC-ceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeec-CCCCeeeEEECCCCcEEEEEe
Q 002564          499 KVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSG  576 (907)
Q Consensus       499 ~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~-h~~~I~~l~fspdg~~l~s~s  576 (907)
                      ++||+.+. +++..+.++..+. -.....+++|++++.|++|++||..++++++.+.+ |.+.|+.+++.  ...+++++
T Consensus       395 kvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~  471 (537)
T KOG0274|consen  395 KVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSS  471 (537)
T ss_pred             EeecCCchhhhhhhhcCCcccc-cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEe
Confidence            99999999 8999998885544 33444688999999999999999999999999999 77899988886  45788899


Q ss_pred             CCCcEEEEEcCCCceeeEe
Q 002564          577 MDGSLRIWDVILARQIDAI  595 (907)
Q Consensus       577 ~Dg~I~vwd~~~~~~~~~~  595 (907)
                      .||++++||+++++++..+
T Consensus       472 ~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  472 DDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cCCeeEEEecccCchhhhh
Confidence            9999999999999988766

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-27  Score=256.56  Aligned_cols=300  Identities=16%  Similarity=0.248  Sum_probs=219.5

Q ss_pred             CCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecC----------CCCEEEEEEec---C
Q 002564          170 TKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM----------RGAVTALAFSS---D  235 (907)
Q Consensus       170 ~~~~~~~~~-~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~----------~~~v~~l~fs~---d  235 (907)
                      .-...+.+. .|.+.|++|.||+||+|||+|+.||.|+||.+...+.. ......          .+.+..+.-++   .
T Consensus       255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~-~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~  333 (712)
T KOG0283|consen  255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM-RVAEGDSSCMYFEYNANSQIEPSTSSEEKIS  333 (712)
T ss_pred             eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh-cccccccchhhhhhhhccccCcccccccccc
Confidence            334455666 89999999999999999999999999999998864431 111110          01111111111   0


Q ss_pred             CC-CEEEEEeCCCcEEEEECC----CceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEec
Q 002564          236 GQ-PLLASGASSGVISIWNLE----KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR  310 (907)
Q Consensus       236 g~-~~l~sg~~dg~I~iwd~~----~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~  310 (907)
                      ++ ...-.+..... .+.+..    ..+++..+. +|.+.|..+.|+.++ +|++++.|.+||+|++...    .++..+
T Consensus       334 ~~~s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~----~CL~~F  406 (712)
T KOG0283|consen  334 SRTSSSRKGSQSPC-VLLPLKAFVFSEKPFCEFK-GHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK----ECLKVF  406 (712)
T ss_pred             ccccccccccCCcc-ccCCCccccccccchhhhh-ccchhheecccccCC-eeEeccccccEEeecCCCc----ceeeEE
Confidence            01 01112222223 222222    236677777 999999999999876 8999999999999988755    567766


Q ss_pred             cCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccc
Q 002564          311 SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW  389 (907)
Q Consensus       311 ~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  389 (907)
                       .|...|+|++|+| |.+++++|+-||.+|+|++...+..                                        
T Consensus       407 -~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv----------------------------------------  445 (712)
T KOG0283|consen  407 -SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV----------------------------------------  445 (712)
T ss_pred             -ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE----------------------------------------
Confidence             7999999999999 8999999999999999998644322                                        


Q ss_pred             cceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccccc
Q 002564          390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (907)
Q Consensus       390 ~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~  469 (907)
                                    .|.               .-..-|++++++|+|++.++|+-+|.+++|+....+....+.-.....
T Consensus       446 --------------~W~---------------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~  496 (712)
T KOG0283|consen  446 --------------DWN---------------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK  496 (712)
T ss_pred             --------------eeh---------------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence                          221               112679999999999999999999999999998877665553222111


Q ss_pred             ccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECCCCceeeeeecC---cceeEEEEeeCCCEEEEEeCCCeEEEEEcc
Q 002564          470 NYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (907)
Q Consensus       470 ~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~dg~I~v~d~~  545 (907)
                      .......|+++.|.|.. ..+++.+.|..|||+|.....++..++..   ..-....|+.||++|+++++|..|++|+..
T Consensus       497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            11222389999999754 45778888999999999888888888754   344567899999999999999999999986


Q ss_pred             cc
Q 002564          546 AL  547 (907)
Q Consensus       546 ~~  547 (907)
                      ..
T Consensus       577 ~~  578 (712)
T KOG0283|consen  577 SF  578 (712)
T ss_pred             CC
Confidence            54

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=3.3e-27  Score=259.53  Aligned_cols=304  Identities=18%  Similarity=0.241  Sum_probs=246.3

Q ss_pred             ccccCeEEEEEecCCCEEEEEc--CCCcEEEEEccCCC--------CCcceeEeccCCCCCCeEEEEecCCCEEEEEeCC
Q 002564          266 AHDNAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTD--------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  335 (907)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~~--~d~~i~vw~~~~~~--------~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d  335 (907)
                      .+...|.++..+|++..++|||  .|+.+++|+.+.-.        ..+..+.....|.+.|.|++|+|||++|++|+.|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            3456789999999999999999  89999999765421        1245667778999999999999999999999999


Q ss_pred             CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecce
Q 002564          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (907)
Q Consensus       336 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~  415 (907)
                      +.|.+|..........+                                         -...+...+.-|..        
T Consensus        91 ~~v~iW~~~~~~~~~~f-----------------------------------------gs~g~~~~vE~wk~--------  121 (942)
T KOG0973|consen   91 RLVMIWERAEIGSGTVF-----------------------------------------GSTGGAKNVESWKV--------  121 (942)
T ss_pred             ceEEEeeecccCCcccc-----------------------------------------cccccccccceeeE--------
Confidence            99999986531000000                                         00001111222221        


Q ss_pred             eeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecC
Q 002564          416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  495 (907)
Q Consensus       416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  495 (907)
                       .....+|...|..++|+|++.++++++.|++|.+||..+......+.        +|.+.|-++.|+|-|+++++-+.|
T Consensus       122 -~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~--------~H~s~VKGvs~DP~Gky~ASqsdD  192 (942)
T KOG0973|consen  122 -VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR--------GHQSLVKGVSWDPIGKYFASQSDD  192 (942)
T ss_pred             -EEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee--------cccccccceEECCccCeeeeecCC
Confidence             22233688999999999999999999999999999999997777775        999999999999999999999999


Q ss_pred             CeEEEEECCCCceeeeeecC-------cceeEEEEeeCCCEEEEEeC----CCeEEEEEcccceeEEEeecCCCCeeeEE
Q 002564          496 GDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRMVRKFEGHTDRITDFC  564 (907)
Q Consensus       496 g~i~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~~~la~~~~----dg~I~v~d~~~~~~~~~~~~h~~~I~~l~  564 (907)
                      ++|+||++.+....+.+..+       .-...+.|||||++|++...    -..+.|.+-.+++.-..|-||.+++..+.
T Consensus       193 rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvr  272 (942)
T KOG0973|consen  193 RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVR  272 (942)
T ss_pred             ceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEE
Confidence            99999998876666665433       56788999999999998743    34789999999999999999999999999


Q ss_pred             ECCC-----Cc------------EEEEEeCCCcEEEEEcCCCceeeEeee--CCceEEEEECCCCceEEEEEecCCeEEE
Q 002564          565 FSED-----GK------------WLLSSGMDGSLRIWDVILARQIDAIHV--DVSITALSLSPNMDVLATAHVDQNGVYL  625 (907)
Q Consensus       565 fspd-----g~------------~l~s~s~Dg~I~vwd~~~~~~~~~~~~--~~~v~~l~~spdg~~lat~~~d~~~i~l  625 (907)
                      |+|.     .+            .+|+||.|++|.||.....+++..+..  ...|..++|+|||-.|.+++.|| +|.+
T Consensus       273 FnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG-tV~~  351 (942)
T KOG0973|consen  273 FNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG-TVAL  351 (942)
T ss_pred             eChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC-eEEE
Confidence            9981     11            578999999999999988888766653  56799999999999999999999 6988


Q ss_pred             eec
Q 002564          626 WVN  628 (907)
Q Consensus       626 W~~  628 (907)
                      ..+
T Consensus       352 i~F  354 (942)
T KOG0973|consen  352 IHF  354 (942)
T ss_pred             EEc
Confidence            875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=9.6e-27  Score=229.10  Aligned_cols=282  Identities=18%  Similarity=0.330  Sum_probs=247.1

Q ss_pred             CCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCc
Q 002564          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP  304 (907)
Q Consensus       225 ~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~  304 (907)
                      ..++++...|... .+.+|+.|..+.++|..+++.+..+. ||...|+.+.|+|+...+++++.|..|++|......   
T Consensus       220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---  294 (506)
T KOG0289|consen  220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---  294 (506)
T ss_pred             CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeecccccc---
Confidence            4688888888744 78999999999999999999999999 999999999999999999999999999999776553   


Q ss_pred             ceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccc
Q 002564          305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (907)
Q Consensus       305 ~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  384 (907)
                       .......|..+|+.+..+|.|.||++++.||+..+.|++++......+.                              
T Consensus       295 -~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~------------------------------  343 (506)
T KOG0289|consen  295 -EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD------------------------------  343 (506)
T ss_pred             -CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee------------------------------
Confidence             3344568999999999999999999999999999999887765443211                              


Q ss_pred             ccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeec
Q 002564          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD  464 (907)
Q Consensus       385 ~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~  464 (907)
                                                          ....-.+++.+|+|||..+.+|+.||.|++||+.++.....|+ 
T Consensus       344 ------------------------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-  386 (506)
T KOG0289|consen  344 ------------------------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-  386 (506)
T ss_pred             ------------------------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-
Confidence                                                0112568999999999999999999999999999999888886 


Q ss_pred             cccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC--cceeEEEEeeCCCEEEEEeCCCeEEEE
Q 002564          465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLF  542 (907)
Q Consensus       465 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~dg~I~v~  542 (907)
                             +|.++|..++|+.+|-+|++++.|+.|++||++..+...++...  .++.++.|.+.|.+|+.++.|-.|+++
T Consensus       387 -------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~  459 (506)
T KOG0289|consen  387 -------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC  459 (506)
T ss_pred             -------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence                   89999999999999999999999999999999998888888766  469999999999999999877666666


Q ss_pred             Ec--ccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEc
Q 002564          543 DV--VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       543 d~--~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~  586 (907)
                      +-  .++.++..+..|.+..+.+.|..+.++++++|.|..++++.+
T Consensus       460 ~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  460 KKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            63  367888889999999999999999999999999999998864

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3e-27  Score=237.25  Aligned_cols=302  Identities=18%  Similarity=0.283  Sum_probs=236.1

Q ss_pred             EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcE
Q 002564          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSI  292 (907)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i  292 (907)
                      ..+.++ ...|.++++.|.|. .+++|+.|.+|++||+...    +....+.......|.+++|++.+..|++.+.....
T Consensus       161 i~l~hg-tk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  161 IQLKHG-TKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             EeccCC-ceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            344444 77899999999999 8999999999999998753    33444544566789999999999988888888899


Q ss_pred             EEEEccCCC------CC--cceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564          293 KMWIFDTTD------GD--PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (907)
Q Consensus       293 ~vw~~~~~~------~~--~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  363 (907)
                      +++|-+...      +.  .+-+..-.||...++|.+|+| +...+++++.||++|+|++...+.....-.         
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik---------  309 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK---------  309 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe---------
Confidence            999765431      11  111233468999999999999 556899999999999999876542221100         


Q ss_pred             ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (907)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (907)
                                                                           -....+....+++++|+++|+.++.|+
T Consensus       310 -----------------------------------------------------~k~~~g~Rv~~tsC~~nrdg~~iAagc  336 (641)
T KOG0772|consen  310 -----------------------------------------------------TKPAGGKRVPVTSCAWNRDGKLIAAGC  336 (641)
T ss_pred             -----------------------------------------------------eccCCCcccCceeeecCCCcchhhhcc
Confidence                                                                 011113346789999999999999999


Q ss_pred             CCCcEEEEeCCCCccceeeeccccccccCcCC--cEEEEEEcCCCCEEEEEecCCeEEEEECCCCc-eeeee---ecCcc
Q 002564          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRW---EVGCS  517 (907)
Q Consensus       444 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---~~~~~  517 (907)
                      .||.|.+|+..+......+.     ...+|..  .|++|.|+++|++|++-|.|+++++||+...+ ++...   ....+
T Consensus       337 ~DGSIQ~W~~~~~~v~p~~~-----vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~  411 (641)
T KOG0772|consen  337 LDGSIQIWDKGSRTVRPVMK-----VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP  411 (641)
T ss_pred             cCCceeeeecCCcccccceE-----eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence            99999999986544433332     1258887  89999999999999999999999999998653 33332   22367


Q ss_pred             eeEEEEeeCCCEEEEEeC------CCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcC
Q 002564          518 LVKIVYHRVNGLLATVAD------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (907)
Q Consensus       518 i~~~~~s~~~~~la~~~~------dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~  587 (907)
                      -+.++|||+.++|++|..      .|.+.+||..+...+.++.-....|..+.|+|.=+.|+.++.||+++||==+
T Consensus       412 ~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  412 GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence            788999999999999864      5789999999999999988778889999999988889999999999998433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1.7e-26  Score=252.51  Aligned_cols=283  Identities=19%  Similarity=0.286  Sum_probs=248.1

Q ss_pred             cccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceee-EecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCC
Q 002564           92 HSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGH-VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST  170 (907)
Q Consensus        92 h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~  170 (907)
                      |...+.+..+.++++++++.|++|++||..++..    +.. +.+|.+.+..+++...+  +++++|+.|.++++||..+
T Consensus       207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~----i~~~l~GH~g~V~~l~~~~~~--~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYL----ILTRLVGHFGGVWGLAFPSGG--DKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             CcchhhhheeecCeEEecCCCceeEEeecccceE----EEeeccCCCCCceeEEEecCC--CEEEEEecCCcEEeEecCC
Confidence            5677888888999999999999999999999988    666 88899999999988755  7899999999999999999


Q ss_pred             CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEE
Q 002564          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (907)
Q Consensus       171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~  250 (907)
                      |++.+.+.+|.+.|.++...+.  ++++|+.|.+|++|++.++..+..+.. |.++|.++...  +. ++++|+.||+|+
T Consensus       281 g~C~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~-~lvsgs~d~~v~  354 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EP-LLVSGSYDGTVK  354 (537)
T ss_pred             CcEEEEecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CC-EEEEEecCceEE
Confidence            9999999999999999988654  688899999999999999999999987 58999999998  44 899999999999


Q ss_pred             EEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEE
Q 002564          251 IWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL  330 (907)
Q Consensus       251 iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~  330 (907)
                      +||+.++++++.+. +|...|+++.+.+. ..+++|+.|++|++||++...   +++..+.+|..-+..+.+  .+++|+
T Consensus       355 VW~~~~~~cl~sl~-gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~--~~~~Lv  427 (537)
T KOG0274|consen  355 VWDPRTGKCLKSLS-GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLL--RDNFLV  427 (537)
T ss_pred             EEEhhhceeeeeec-CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh---hhhhhhcCCccccccccc--ccceeE
Confidence            99999999999999 89999999988765 799999999999999988763   578888899998877666  467999


Q ss_pred             EEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeec
Q 002564          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (907)
Q Consensus       331 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~  410 (907)
                      +++.|++|++||..+++....+...                                                       
T Consensus       428 s~~aD~~Ik~WD~~~~~~~~~~~~~-------------------------------------------------------  452 (537)
T KOG0274|consen  428 SSSADGTIKLWDAEEGECLRTLEGR-------------------------------------------------------  452 (537)
T ss_pred             eccccccEEEeecccCceeeeeccC-------------------------------------------------------
Confidence            9999999999999888776665321                                                       


Q ss_pred             eecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564          411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (907)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~  462 (907)
                                  +...+.++++.  ...+++++.+|.+.+||+.++.....+
T Consensus       453 ------------~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  453 ------------HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ------------CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence                        22556666665  578899999999999999999888766

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.6e-27  Score=233.54  Aligned_cols=296  Identities=19%  Similarity=0.279  Sum_probs=238.9

Q ss_pred             EecC-CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEe
Q 002564          199 GCSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF  277 (907)
Q Consensus       199 g~~d-g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~  277 (907)
                      ++.| ..+.+||+++|....++.+.....-.++..- .+.+++++-.....|.+|.+.......... --.++|.+++-+
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~-v~Pg~v~al~s~   90 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI-VLPGPVHALASS   90 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc-ccccceeeeecC
Confidence            3444 5699999999999999987522222333222 224344444566789999987765554222 467889999999


Q ss_pred             cCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhh
Q 002564          278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV  357 (907)
Q Consensus       278 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  357 (907)
                      |+|.+|+.|+..|.+++|.+.++    .++..+.+|..+|+++.|+.||.+|++||.||.|.+|++..-           
T Consensus        91 n~G~~l~ag~i~g~lYlWelssG----~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l-----------  155 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWELSSG----ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL-----------  155 (476)
T ss_pred             CCceEEEeecccCcEEEEEeccc----cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee-----------
Confidence            99999999989999999988876    678888999999999999999999999999999999986421           


Q ss_pred             hHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCC
Q 002564          358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  437 (907)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  437 (907)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (476)
T KOG0646|consen  156 --------------------------------------------------------------------------------  155 (476)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC--CCEEEEEecCCeEEEEECCCCceeeeeecC
Q 002564          438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGRDLKSRWEVG  515 (907)
Q Consensus       438 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  515 (907)
                        +....++        +..+...+        ..|.-+|+.+.+.+.  +.+++|++.|.++++||+..+.++.++..+
T Consensus       156 --v~a~~~~--------~~~p~~~f--------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp  217 (476)
T KOG0646|consen  156 --VSADNDH--------SVKPLHIF--------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP  217 (476)
T ss_pred             --cccccCC--------Cccceeee--------ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC
Confidence              1111111        11222223        389999999998875  478999999999999999999999999999


Q ss_pred             cceeEEEEeeCCCEEEEEeCCCeEEEEEcccce----------------eEEEeecCCC--CeeeEEECCCCcEEEEEeC
Q 002564          516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR----------------MVRKFEGHTD--RITDFCFSEDGKWLLSSGM  577 (907)
Q Consensus       516 ~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~----------------~~~~~~~h~~--~I~~l~fspdg~~l~s~s~  577 (907)
                      ..+.+++..|-+..+.+|+.+|.|.+.++.+..                .+..+.||.+  .|++++.+-||..|++|+.
T Consensus       218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~  297 (476)
T KOG0646|consen  218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE  297 (476)
T ss_pred             CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence            999999999999999999999999998876432                3566889998  9999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeEee-eCCceEEEEECCC
Q 002564          578 DGSLRIWDVILARQIDAIH-VDVSITALSLSPN  609 (907)
Q Consensus       578 Dg~I~vwd~~~~~~~~~~~-~~~~v~~l~~spd  609 (907)
                      ||.|+|||+.+.++++++. ..++|+.+.+.|=
T Consensus       298 dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  298 DGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             CCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            9999999999999999998 6778999999663

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.5e-25  Score=213.39  Aligned_cols=294  Identities=13%  Similarity=0.203  Sum_probs=236.8

Q ss_pred             CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeC--CCc
Q 002564          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS--SGV  248 (907)
Q Consensus       171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~--dg~  248 (907)
                      -++.+.|......|+++.|+++|.++++++.|..++|||..+++.+.++... +-.+..++|..... .++.++.  |.+
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-kyG~~~~~Fth~~~-~~i~sStk~d~t   81 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-KYGVDLACFTHHSN-TVIHSSTKEDDT   81 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc-cccccEEEEecCCc-eEEEccCCCCCc
Confidence            3445556667889999999999999999999999999999999999999876 55788899987766 4555554  889


Q ss_pred             EEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCE
Q 002564          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (907)
Q Consensus       249 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~  328 (907)
                      |+..++.+.+.++-+. ||...|++++.+|-+..+++++.|++|++||++.......+      +...-..++|.|+|-+
T Consensus        82 IryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l------~~~~~pi~AfDp~GLi  154 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL------NLSGRPIAAFDPEGLI  154 (311)
T ss_pred             eEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE------ecCCCcceeECCCCcE
Confidence            9999999999999999 99999999999999999999999999999999866433221      2334456899999999


Q ss_pred             EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEee
Q 002564          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (907)
Q Consensus       329 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~  408 (907)
                      ++++.....|++||++.-..                         .|...+                             
T Consensus       155 fA~~~~~~~IkLyD~Rs~dk-------------------------gPF~tf-----------------------------  180 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDK-------------------------GPFTTF-----------------------------  180 (311)
T ss_pred             EEEecCCCeEEEEEecccCC-------------------------CCceeE-----------------------------
Confidence            99988888999999875311                         111111                             


Q ss_pred             eceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCC-cEEEEEEcCCCC
Q 002564          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG-EVVGVACDSTNT  487 (907)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~  487 (907)
                               ..........+.+.|||||+++++++..+.+++.|.-+|.....+....      ..+ --...+|+||++
T Consensus       181 ---------~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~------~~~~~~~~a~ftPds~  245 (311)
T KOG1446|consen  181 ---------SITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP------NAGNLPLSATFTPDSK  245 (311)
T ss_pred             ---------ccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc------CCCCcceeEEECCCCc
Confidence                     1111233678899999999999999999999999999999888886211      111 125778999999


Q ss_pred             EEEEEecCCeEEEEECCCCceeeeeec--CcceeEEEEeeCCCEEEEEeCCCeEEEEEc
Q 002564          488 LMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDV  544 (907)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~dg~I~v~d~  544 (907)
                      ++++|+.||+|.+|+++++..+..+..  ..++.++.|+|.-.++++++  ..+.+|=.
T Consensus       246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p  302 (311)
T KOG1446|consen  246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLP  302 (311)
T ss_pred             EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEec
Confidence            999999999999999999999998877  38899999999777777765  45666643

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=9.7e-28  Score=247.68  Aligned_cols=352  Identities=17%  Similarity=0.253  Sum_probs=273.6

Q ss_pred             eCCEEEEEecCCcEEEEecCCCCcc--ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCC--eEEEEE
Q 002564          102 FGEHILSIDIDGNMFIWAFKGIEEN--LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK--KKLYEF  177 (907)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~  177 (907)
                      .+++|+|+|.||.|++|++....-.  ...+.+++.|..++..++..-.+  +.++++|.|-+|++|+...+  -+..++
T Consensus        36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~--~tlIS~SsDtTVK~W~~~~~~~~c~sti  113 (735)
T KOG0308|consen   36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG--KTLISASSDTTVKVWNAHKDNTFCMSTI  113 (735)
T ss_pred             CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC--CceEEecCCceEEEeecccCcchhHhhh
Confidence            5788999999999999998654331  22366778888888888877777  78999999999999999877  577889


Q ss_pred             cCCCCCEEEEEE-cCCCCEEEEEecCCeEEEEEccCC--ceEEEEe--------ecCCCCEEEEEEecCCCCEEEEEeCC
Q 002564          178 KGWGSSISSCVS-SPALDVVAVGCSDGKIHVHNVRYD--EELVTFT--------HSMRGAVTALAFSSDGQPLLASGASS  246 (907)
Q Consensus       178 ~~h~~~I~~l~~-sp~~~~la~g~~dg~I~iwd~~~~--~~~~~~~--------~~~~~~v~~l~fs~dg~~~l~sg~~d  246 (907)
                      ..|...|.|+++ .++..++|+|+-|+.|.+||+.++  ..+.++.        .++..+|++++.++.|. ++++|+..
T Consensus       114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgte  192 (735)
T KOG0308|consen  114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTE  192 (735)
T ss_pred             hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcc
Confidence            999999999999 888899999999999999999987  3333332        24577999999999997 99999999


Q ss_pred             CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC
Q 002564          247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (907)
Q Consensus       247 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g  326 (907)
                      +.|++||.++++.+..++ +|...|..+..++||..+++++.||+|++||+...    +++.++..|...|+++..+|+-
T Consensus       193 k~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf  267 (735)
T KOG0308|consen  193 KDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSF  267 (735)
T ss_pred             cceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCc
Confidence            999999999999999999 99999999999999999999999999999998755    7888889999999999999999


Q ss_pred             CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEE
Q 002564          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (907)
Q Consensus       327 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~  406 (907)
                      .++++|+.||.|..-|+++......+-                                                     
T Consensus       268 ~~vYsG~rd~~i~~Tdl~n~~~~tlic-----------------------------------------------------  294 (735)
T KOG0308|consen  268 THVYSGGRDGNIYRTDLRNPAKSTLIC-----------------------------------------------------  294 (735)
T ss_pred             ceEEecCCCCcEEecccCCchhheEee-----------------------------------------------------
Confidence            999999999999998887642211110                                                     


Q ss_pred             eeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC
Q 002564          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN  486 (907)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  486 (907)
                                     ....++..+..+...+-+-+++.|+.|..|...-..                       .+++.+
T Consensus       295 ---------------k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~-----------------------~l~~s~  336 (735)
T KOG0308|consen  295 ---------------KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI-----------------------ALSVSG  336 (735)
T ss_pred             ---------------cCCCchhhhhhccccCCceeeeccccceecCCcccc-----------------------ccccCC
Confidence                           011444555555444555778888889888764321                       222233


Q ss_pred             CEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee
Q 002564          487 TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE  554 (907)
Q Consensus       487 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~  554 (907)
                      ++.. -+.|......+... .+-..+.++.+|...++-.|.+.+++-...|.+.+||+-....+..|.
T Consensus       337 ~~~~-~~T~~~~~~~~~~~-tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  337 DLDF-FSTDSNNHSCDLTN-TPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             CCCc-ccccCCCccccccC-CCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence            2222 12222223333211 233445556677777888889999999999999999998776666554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.95  E-value=6.7e-26  Score=232.38  Aligned_cols=537  Identities=15%  Similarity=0.212  Sum_probs=307.3

Q ss_pred             eeEEEEcccccceEEEEe---eCCEEEEEecCCcEEEEecCCCCccccceeeEe-cCC-CcccEEEEcCCCCCCEEEEEe
Q 002564           84 HQVATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVK-LDD-KFTPTCIMHPDTYLNKVIVGS  158 (907)
Q Consensus        84 ~~~~~~~~h~~~V~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~p~~~~~~l~~~s  158 (907)
                      +.+..+.+|...|+.+.|   +...|++|+.|..|+||.+..+-......-.+. .+. ..+-+.-|||... +.++ .+
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaD-gil~-s~  147 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTAD-GILA-SG  147 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcC-ceEE-ec
Confidence            346668999999999985   578899999999999999984432211111122 223 3334445999873 4444 44


Q ss_pred             cCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccC-CceEEEEeecCCCCEEEEEEecCCC
Q 002564          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQ  237 (907)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~dg~  237 (907)
                      ..|++++||+.+++.+..+.+|...|.++.|+.||.+|++.+.|..|+|||.+. ++.++....|....=..+.|..+-.
T Consensus       148 a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~  227 (1012)
T KOG1445|consen  148 AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWE  227 (1012)
T ss_pred             cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchh
Confidence            778999999999999999999999999999999999999999999999999985 4566666555333445677776655


Q ss_pred             CEEEEEeC---CCcEEEEECCCc-eeeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCC---------
Q 002564          238 PLLASGAS---SGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGD---------  303 (907)
Q Consensus       238 ~~l~sg~~---dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~---------  303 (907)
                      .++-+|-.   -..|++||.... ..++++.......|.---|.||.++|+-++ .++.+.++.+......         
T Consensus       228 rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tl  307 (1012)
T KOG1445|consen  228 RLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTL  307 (1012)
T ss_pred             hhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcc
Confidence            45555542   357899998754 445555433455566666788887666555 3556665543221000         


Q ss_pred             ----------------------ccee----------------------------------------EeccCCCCCCeEEE
Q 002564          304 ----------------------PRLL----------------------------------------RFRSGHSAPPLCIR  321 (907)
Q Consensus       304 ----------------------~~~~----------------------------------------~~~~~h~~~v~~i~  321 (907)
                                            .+.+                                        ..+.|....|..+.
T Consensus       308 e~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvS  387 (1012)
T KOG1445|consen  308 EEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVS  387 (1012)
T ss_pred             hhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccc
Confidence                                  0000                                        00001011111111


Q ss_pred             Eec------------------------------------------------C--CCEEEEEeCCCCEEEEEceeccc---
Q 002564          322 FYA------------------------------------------------N--GRHILSAGQDRAFRLFSVIQDQQ---  348 (907)
Q Consensus       322 ~~~------------------------------------------------~--g~~l~s~~~dg~i~iwd~~~~~~---  348 (907)
                      ..|                                                |  .+.-+.  ....++-.+.+..+.   
T Consensus       388 l~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~--~~~e~r~l~~~~~E~~~g  465 (1012)
T KOG1445|consen  388 LAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP--KKEEVRELDYRPYEKENG  465 (1012)
T ss_pred             cCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC--cchhhhhhcccccccccC
Confidence            110                                                0  000000  001111111111000   


Q ss_pred             ------ceeechhhhhH--HHh---hccchhhh----------cccCceeEeeecccccccc-------cceEEEeeC--
Q 002564          349 ------SRELSQRHVAK--RAR---KLKMKEEE----------LKLKPVIAFDCAEIRERDW-------CNVVTCHMD--  398 (907)
Q Consensus       349 ------~~~~~~~~~~~--~~~---~~~~~~~~----------~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~--  398 (907)
                            .....++....  .+.   ....+...          ..+.|...-.....+....       +.+.....-  
T Consensus       466 ~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~  545 (1012)
T KOG1445|consen  466 VHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRP  545 (1012)
T ss_pred             ccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccc
Confidence                  00000000000  000   00000000          0000000000000000000       000000000  


Q ss_pred             ----CceEEEEEeeeceeccee-----ee-cCCCCCCceEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCccce-eeecc
Q 002564          399 ----TAQAYVWRLQNFVLGEHI-----LR-PCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISRG-SYLDM  465 (907)
Q Consensus       399 ----~~~v~~w~~~~~~~~~~~-----~~-~~~~~~~~v~~~~~s~~g~~l~~--g~~dg~i~i~d~~~~~~~~-~~~~~  465 (907)
                          -+.+.-+.-..+..+...     ++ ....-++...  -|..+..++++  .+..|.|.||++...-.+. ...  
T Consensus       546 ~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsn--Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~--  621 (1012)
T KOG1445|consen  546 KSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESN--GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVM--  621 (1012)
T ss_pred             cceeeccchheeeccCccccchhhhhhhhcccccCCCccC--ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccc--
Confidence                000101111011110000     00 0000011111  22333445554  4567899999987532221 110  


Q ss_pred             ccccccCcCCcEEEEEEcC-CCCEEEEEecCCeEEEEECCCCce-------eeeeec-CcceeEEEEee-CCCEEEEEeC
Q 002564          466 SERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDL-------KSRWEV-GCSLVKIVYHR-VNGLLATVAD  535 (907)
Q Consensus       466 ~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~-~~~i~~~~~s~-~~~~la~~~~  535 (907)
                         ...-....|+.+.|+| |...|++++.||.|++|.+..+.+       ...+.. ...|+++.||| -.+.|++++.
T Consensus       622 ---p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy  698 (1012)
T KOG1445|consen  622 ---PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY  698 (1012)
T ss_pred             ---cccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc
Confidence               0013456799999999 568899999999999999876532       233333 37899999999 4678999999


Q ss_pred             CCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCce-eeEeee--CCceEEEEECCCCce
Q 002564          536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ-IDAIHV--DVSITALSLSPNMDV  612 (907)
Q Consensus       536 dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~--~~~v~~l~~spdg~~  612 (907)
                      |-+|++||+.+++....+.||++.|.+++|||||+.+++.+.||+|+||+-.++.. +..-.+  ...-..+.|.-||++
T Consensus       699 d~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~  778 (1012)
T KOG1445|consen  699 DSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRI  778 (1012)
T ss_pred             cceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcE
Confidence            99999999999999999999999999999999999999999999999999877643 322222  122456788889999


Q ss_pred             EEEEEecC---CeEEEeecccc
Q 002564          613 LATAHVDQ---NGVYLWVNRCM  631 (907)
Q Consensus       613 lat~~~d~---~~i~lW~~~~~  631 (907)
                      ++..+-|.   +.|.+|+.+.+
T Consensus       779 viv~Gfdk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  779 VIVVGFDKSSERQVQMYDAQTL  800 (1012)
T ss_pred             EEEecccccchhhhhhhhhhhc
Confidence            99988775   34777775443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=5.4e-28  Score=232.51  Aligned_cols=292  Identities=15%  Similarity=0.230  Sum_probs=246.5

Q ss_pred             EEEEcccccceEEEEee--C-CEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCc
Q 002564           86 VATWSRHSAKVNLLLLF--G-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS  162 (907)
Q Consensus        86 ~~~~~~h~~~V~~l~~~--g-~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~  162 (907)
                      +..+.||...|.+++-.  . ..++||+.||.|++||+.+.++    ..++..|.+++...++...    .+++++.|.+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~----~~~f~AH~G~V~Gi~v~~~----~~~tvgdDKt  130 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC----IRTFKAHEGLVRGICVTQT----SFFTVGDDKT  130 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh----hheeecccCceeeEEeccc----ceEEecCCcc
Confidence            55689999999999953  3 5699999999999999999888    8889999999988888873    4888889999


Q ss_pred             EEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEE
Q 002564          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS  242 (907)
Q Consensus       163 i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~s  242 (907)
                      |+.|-+.. .+++++.+ .+.+..+.-+..++.+|+++.  .|.|||..-..++..+.-+ ...|.++.|+|....+|++
T Consensus       131 vK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG-~Dti~svkfNpvETsILas  205 (433)
T KOG0268|consen  131 VKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG-ADSISSVKFNPVETSILAS  205 (433)
T ss_pred             eeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecC-CCceeEEecCCCcchheee
Confidence            99999754 57888877 677788888888888999886  5999999999999999876 5789999999998889999


Q ss_pred             EeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEE
Q 002564          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  322 (907)
Q Consensus       243 g~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~  322 (907)
                      |+.|+.|.+||++++.++..+.  -.-.-+.++|+|.+-.+++|+.|..++.+|+....   +.+....+|...|.++.|
T Consensus       206 ~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvsAV~dVdf  280 (433)
T KOG0268|consen  206 CASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVSAVMDVDF  280 (433)
T ss_pred             eccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhc---ccchhhcccceeEEEecc
Confidence            9999999999999998888776  44556899999988889999999999999887654   456777899999999999


Q ss_pred             ecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceE
Q 002564          323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (907)
Q Consensus       323 ~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v  402 (907)
                      +|.|+-+++|+.|.+|++|.+..+........                                                
T Consensus       281 sptG~EfvsgsyDksIRIf~~~~~~SRdiYht------------------------------------------------  312 (433)
T KOG0268|consen  281 SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT------------------------------------------------  312 (433)
T ss_pred             CCCcchhccccccceEEEeecCCCcchhhhhH------------------------------------------------
Confidence            99999999999999999999876543222111                                                


Q ss_pred             EEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564          403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (907)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~  462 (907)
                             .            ....|.|+.||.|.+|+++|+.|+.|++|.....+.+..+
T Consensus       313 -------k------------RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~  353 (433)
T KOG0268|consen  313 -------K------------RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI  353 (433)
T ss_pred             -------h------------hhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence                   0            0167899999999999999999999999998765554433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.2e-27  Score=250.99  Aligned_cols=299  Identities=17%  Similarity=0.259  Sum_probs=219.6

Q ss_pred             CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccc
Q 002564          312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (907)
Q Consensus       312 ~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  391 (907)
                      .|.+.|+++.|++||+|||+||.||.|+||.+....... ...+........+....   ...|...-. . .... ...
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~-~~~~~~~~~~~~~~~~s---~~~p~~s~~-~-~~~~-~~s  337 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR-VAEGDSSCMYFEYNANS---QIEPSTSSE-E-KISS-RTS  337 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc-ccccccchhhhhhhhcc---ccCcccccc-c-cccc-ccc
Confidence            899999999999999999999999999999998743311 10000000000000000   000000000 0 0000 000


Q ss_pred             eEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccccccc
Q 002564          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY  471 (907)
Q Consensus       392 ~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  471 (907)
                      ....+..... ..............+....+|...|-.+.||.+ ++|++++.|.+|++|++....++..|         
T Consensus       338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F---------  406 (712)
T KOG0283|consen  338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF---------  406 (712)
T ss_pred             ccccccCCcc-ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE---------
Confidence            0000000111 122222333335556666789999999999976 68999999999999999999999998         


Q ss_pred             CcCCcEEEEEEcC-CCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeE
Q 002564          472 AHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV  550 (907)
Q Consensus       472 ~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~  550 (907)
                      .|...|+|++|+| |.+++++|+.||.+|+|++...+...-.+.+.-|++++|.|||+..++|+-+|.+++|++...+.+
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence            6999999999999 668999999999999999999999988888999999999999999999999999999999988776


Q ss_pred             EEeec--C------CCCeeeEEECCCC-cEEEEEeCCCcEEEEEcCCCceeeEeeeCCc---eEEEEECCCCceEEEEEe
Q 002564          551 RKFEG--H------TDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVS---ITALSLSPNMDVLATAHV  618 (907)
Q Consensus       551 ~~~~~--h------~~~I~~l~fspdg-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~---v~~l~~spdg~~lat~~~  618 (907)
                      ..+.-  |      ...||.+.|.|.. .-+++.+.|..|||+|..+-.++..|++...   -....|+.||++|++++.
T Consensus       487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se  566 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE  566 (712)
T ss_pred             EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence            55431  1      1379999999744 3466677999999999999999988886443   567889999999999998


Q ss_pred             cCCeEEEeecc
Q 002564          619 DQNGVYLWVNR  629 (907)
Q Consensus       619 d~~~i~lW~~~  629 (907)
                      |. .||+|++.
T Consensus       567 Ds-~VYiW~~~  576 (712)
T KOG0283|consen  567 DS-WVYIWKND  576 (712)
T ss_pred             Cc-eEEEEeCC
Confidence            88 69999974

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.8e-26  Score=214.89  Aligned_cols=278  Identities=19%  Similarity=0.312  Sum_probs=222.8

Q ss_pred             EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC-ceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEE
Q 002564          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW  295 (907)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw  295 (907)
                      ..+.....+.|.+++|||....++++|+.||+|++|+++. |.........|.++|.+++|+.||..+++|+.|+.+++|
T Consensus        20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence            3444555789999999996665888999999999999987 455555555799999999999999999999999999999


Q ss_pred             EccCCCCCcceeEeccCCCCCCeEEEEecCCC--EEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564          296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (907)
Q Consensus       296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (907)
                      |+.++.     ......|.++|..+.|-+...  .|++|+.|.+|+.||.+.......+..                   
T Consensus       100 DL~S~Q-----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-------------------  155 (347)
T KOG0647|consen  100 DLASGQ-----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-------------------  155 (347)
T ss_pred             EccCCC-----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-------------------
Confidence            998762     445568999999999998554  899999999999999987665544322                   


Q ss_pred             CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 002564          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (907)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~  453 (907)
                                                                        +..+.++.  --...+++++.+..|.+|++
T Consensus       156 --------------------------------------------------PeRvYa~D--v~~pm~vVata~r~i~vynL  183 (347)
T KOG0647|consen  156 --------------------------------------------------PERVYAAD--VLYPMAVVATAERHIAVYNL  183 (347)
T ss_pred             --------------------------------------------------cceeeehh--ccCceeEEEecCCcEEEEEc
Confidence                                                              12333332  23457899999999999999


Q ss_pred             CCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCce--eeeeecC----------cceeEE
Q 002564          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWEVG----------CSLVKI  521 (907)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~----------~~i~~~  521 (907)
                      +.+.......      ...-+-.++++++.+++...+.|+-+|.+.+..+..+..  -.+++.+          ..|+++
T Consensus       184 ~n~~te~k~~------~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi  257 (347)
T KOG0647|consen  184 ENPPTEFKRI------ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI  257 (347)
T ss_pred             CCCcchhhhh------cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence            8765443221      123456789999999988889999999999999987632  2233332          357889


Q ss_pred             EEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEe
Q 002564          522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (907)
Q Consensus       522 ~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s  576 (907)
                      +|+|.-..|++++.||+..+||-+....+...+.|..+|++.+|+.+|.++|.+.
T Consensus       258 ~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  258 AFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             EeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            9999999999999999999999998888888899999999999999999988653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.9e-26  Score=214.04  Aligned_cols=264  Identities=22%  Similarity=0.380  Sum_probs=209.8

Q ss_pred             EEEEecCCeEEEEEccCC------------ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 002564          196 VAVGCSDGKIHVHNVRYD------------EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI  263 (907)
Q Consensus       196 la~g~~dg~I~iwd~~~~------------~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~  263 (907)
                      +++|+....|.=+++.-.            .++..+.. |.++|++++.+  +. ++|+|+.|-+|+|||+.+...+..+
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~a-H~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSA-HAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccc-cccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhcce
Confidence            556666555555554311            12333334 48899999985  66 9999999999999999999999998


Q ss_pred             ecccccCeEEEEEecCCC--EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEE
Q 002564          264 REAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  341 (907)
Q Consensus       264 ~~~h~~~V~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iw  341 (907)
                      . .|.+.|+++.|.+.-.  .|++|+.||.|.+|+..    .+.++.++.+|.+.|+.++.+|.|++-++.+.|+.++.|
T Consensus        80 l-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~----~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W  154 (362)
T KOG0294|consen   80 L-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG----SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW  154 (362)
T ss_pred             e-ccccceEEEEecCCcchhheeeecCCCcEEEEEcC----CeEEeeeecccccccceeEecCCCceEEEEcCCceeeee
Confidence            8 8999999999999775  89999999999999764    458899999999999999999999999999999999999


Q ss_pred             EceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCC
Q 002564          342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  421 (907)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~  421 (907)
                      ++.+++....+..                                                                   
T Consensus       155 NLV~Gr~a~v~~L-------------------------------------------------------------------  167 (362)
T KOG0294|consen  155 NLVRGRVAFVLNL-------------------------------------------------------------------  167 (362)
T ss_pred             hhhcCccceeecc-------------------------------------------------------------------
Confidence            9876543222110                                                                   


Q ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEE
Q 002564          422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (907)
Q Consensus       422 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  501 (907)
                                                                        .+.  .+.+.|+|.|.+++.++. ..|-+|
T Consensus       168 --------------------------------------------------~~~--at~v~w~~~Gd~F~v~~~-~~i~i~  194 (362)
T KOG0294|consen  168 --------------------------------------------------KNK--ATLVSWSPQGDHFVVSGR-NKIDIY  194 (362)
T ss_pred             --------------------------------------------------CCc--ceeeEEcCCCCEEEEEec-cEEEEE
Confidence                                                              111  122667777776666665 456778


Q ss_pred             ECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEE--CCCCcEEEEEeCCC
Q 002564          502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF--SEDGKWLLSSGMDG  579 (907)
Q Consensus       502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~f--spdg~~l~s~s~Dg  579 (907)
                      .+.+......+..+..+.++.|- ++..|++|.+|+.|.+||.++..+...+.+|..+|.++.+  .|++.+|+|+|.||
T Consensus       195 q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  195 QLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             ecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence            77777766666666666666665 4778899999999999999999999999999999999984  56789999999999


Q ss_pred             cEEEEEcCCC
Q 002564          580 SLRIWDVILA  589 (907)
Q Consensus       580 ~I~vwd~~~~  589 (907)
                      .|+|||+...
T Consensus       274 ~I~vWd~~~~  283 (362)
T KOG0294|consen  274 FIKVWDIDME  283 (362)
T ss_pred             eEEEEEcccc
Confidence            9999999876

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9.5e-27  Score=213.46  Aligned_cols=260  Identities=15%  Similarity=0.274  Sum_probs=217.8

Q ss_pred             CeEEEEeC--CeeEEEEc--ccccceEEEEee---CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcC
Q 002564           75 NHIAVVKR--AHQVATWS--RHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHP  147 (907)
Q Consensus        75 ~~I~vw~~--~~~~~~~~--~h~~~V~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p  147 (907)
                      +++.+-+.  ++.+..+.  .-.+.+..+++.   .+.+++++.||++++||......   |+..++.|...+.++-+++
T Consensus        38 G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---Pi~~~kEH~~EV~Svdwn~  114 (311)
T KOG0277|consen   38 GRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---PIHKFKEHKREVYSVDWNT  114 (311)
T ss_pred             ceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---chhHHHhhhhheEEecccc
Confidence            44777775  34444422  346778888874   67899999999999999544333   5777888888888888888


Q ss_pred             CCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEEccCCceEEEEeecCCCC
Q 002564          148 DTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGA  226 (907)
Q Consensus       148 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~  226 (907)
                      ... ..+++++-|++|++|+...++-+.+|++|...|...+|+|. .+++++++.||.+++||++.......+..| ...
T Consensus       115 ~~r-~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~E  192 (311)
T KOG0277|consen  115 VRR-RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSE  192 (311)
T ss_pred             ccc-eeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec-cce
Confidence            764 56777899999999999999999999999999999999995 679999999999999999876555557766 689


Q ss_pred             EEEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCCc
Q 002564          227 VTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDP  304 (907)
Q Consensus       227 v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~  304 (907)
                      |.|+.|+.-...++++|+.|+.|+.||++.- .++..+. +|.-.|..+.|+|.. ..|++++.|-++++||...++.  
T Consensus       193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds--  269 (311)
T KOG0277|consen  193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS--  269 (311)
T ss_pred             eEeecccccCCcEEEecCCCceEEEEehhhccccceeec-CCceEEEEEecCcchhhHhhhccccceEEecccccchh--
Confidence            9999999988889999999999999999876 4566665 999999999999965 5899999999999999876653  


Q ss_pred             ceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEc
Q 002564          305 RLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV  343 (907)
Q Consensus       305 ~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~  343 (907)
                       .+.....|+.-+..+.|++ ++.++++++.|+.+.+|+.
T Consensus       270 -~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  270 -AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             -hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence             4555668999999999998 7889999999999999983

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.5e-26  Score=218.24  Aligned_cols=307  Identities=18%  Similarity=0.367  Sum_probs=259.3

Q ss_pred             CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEE
Q 002564          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (907)
                      .+|++...++++.      .++++.+.||...|+.++......++.+++.|.+.+||.+++|+++.++.+| .+.|.++.
T Consensus       125 srivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH-~GSVNsik  197 (481)
T KOG0300|consen  125 SRIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH-TGSVNSIK  197 (481)
T ss_pred             chheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccc-ccceeeEE
Confidence            4577777777643      3566788999999999999888889999999999999999999999999887 89999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEEC------CC----------------------------------ceeeeeeecccccCe
Q 002564          232 FSSDGQPLLASGASSGVISIWNL------EK----------------------------------RRLQSVIREAHDNAI  271 (907)
Q Consensus       232 fs~dg~~~l~sg~~dg~I~iwd~------~~----------------------------------~~~~~~~~~~h~~~V  271 (907)
                      |++.+. ++++++.|++-.||..      ..                                  ..++..+. +|.+.|
T Consensus       198 fh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV  275 (481)
T KOG0300|consen  198 FHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVV  275 (481)
T ss_pred             eccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee-ccccce
Confidence            999998 9999999999999952      10                                  01234455 899999


Q ss_pred             EEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceeccccee
Q 002564          272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE  351 (907)
Q Consensus       272 ~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~  351 (907)
                      .+..|...|+.+++++.|.+..+||++++    .++..+.||....+.++-+|..+++++++.|.+.++||++.      
T Consensus       276 ~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe------  345 (481)
T KOG0300|consen  276 SACDWLAGGQQMVTASWDRTANLWDVETG----EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE------  345 (481)
T ss_pred             EehhhhcCcceeeeeeccccceeeeeccC----ceeccccCcchhccccccCCcceEEEEeccCceeEeccchh------
Confidence            99999999999999999999999999877    57888899999999999999999999999999999999752      


Q ss_pred             echhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEE
Q 002564          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (907)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  431 (907)
                                                                                                .|.+++
T Consensus       346 --------------------------------------------------------------------------aI~sV~  351 (481)
T KOG0300|consen  346 --------------------------------------------------------------------------AIQSVA  351 (481)
T ss_pred             --------------------------------------------------------------------------hcceee
Confidence                                                                                      111111


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC-ceee
Q 002564          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKS  510 (907)
Q Consensus       432 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~  510 (907)
                                                   .|        .+|...|+++.|.-+. .+++|+.|.+|++||+.+. .++.
T Consensus       352 -----------------------------VF--------QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplA  393 (481)
T KOG0300|consen  352 -----------------------------VF--------QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLA  393 (481)
T ss_pred             -----------------------------ee--------cccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcce
Confidence                                         11        3899999999998765 5889999999999999875 5678


Q ss_pred             eeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEE----EeecCCCCeeeEEECCCC--cEEEEEeCCCcEEEE
Q 002564          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR----KFEGHTDRITDFCFSEDG--KWLLSSGMDGSLRIW  584 (907)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~----~~~~h~~~I~~l~fspdg--~~l~s~s~Dg~I~vw  584 (907)
                      ++...++++.++.+..+..+|.-.++..|++||++..++.+    .-+||...|++++|..+-  .-|++++.|..+.=|
T Consensus       394 TIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW  473 (481)
T KOG0300|consen  394 TIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW  473 (481)
T ss_pred             eeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence            88999999999999988899999999999999998665433    235899999999998654  348899999999999


Q ss_pred             EcCCC
Q 002564          585 DVILA  589 (907)
Q Consensus       585 d~~~~  589 (907)
                      .+...
T Consensus       474 ~in~p  478 (481)
T KOG0300|consen  474 KINTP  478 (481)
T ss_pred             Eeccc
Confidence            98754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.4e-26  Score=227.47  Aligned_cols=285  Identities=21%  Similarity=0.250  Sum_probs=236.5

Q ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEE-EEe----------------ecCCCCEEEEEEecCC
Q 002564          174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV-TFT----------------HSMRGAVTALAFSSDG  236 (907)
Q Consensus       174 ~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~-~~~----------------~~~~~~v~~l~fs~dg  236 (907)
                      ...+..|.-+|++++++|+.+++++++.+|+|.=|++.+++... .+.                ..|...+.+++.++||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            56677899999999999999999999999999999998887441 111                1346789999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCC
Q 002564          237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP  316 (907)
Q Consensus       237 ~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~  316 (907)
                      + +|++|+.|..|.||+.++.+.+..+. +|.+.|.+++|-.....|++++.|++|++|+++..    ..+.++.||...
T Consensus       215 k-ylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----s~vetlyGHqd~  288 (479)
T KOG0299|consen  215 K-YLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----SYVETLYGHQDG  288 (479)
T ss_pred             c-EEEecCCCceEEEecCcccchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHh----HHHHHHhCCccc
Confidence            9 99999999999999999999999998 99999999999998889999999999999998865    467778899999


Q ss_pred             CeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEe
Q 002564          317 PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (907)
Q Consensus       317 v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  396 (907)
                      |..|.-..-++.+-.|+.|+++++|++....+...                                             
T Consensus       289 v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlif---------------------------------------------  323 (479)
T KOG0299|consen  289 VLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIF---------------------------------------------  323 (479)
T ss_pred             eeeechhcccceEEeccccceeEEEeccccceeee---------------------------------------------
Confidence            99999998888888888999999999843322111                                             


Q ss_pred             eCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccc----cC
Q 002564          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN----YA  472 (907)
Q Consensus       397 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~  472 (907)
                                              .++.+.+.|+++-.+ ..+++|+.+|.|.+|++...+++...........    ..
T Consensus       324 ------------------------rg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~  378 (479)
T KOG0299|consen  324 ------------------------RGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN  378 (479)
T ss_pred             ------------------------eCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence                                    123467888888755 5688999999999999999888877653211110    12


Q ss_pred             cCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC----ceeeeeecCcceeEEEEeeCCCEEEEEe
Q 002564          473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVGCSLVKIVYHRVNGLLATVA  534 (907)
Q Consensus       473 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~i~~~~~s~~~~~la~~~  534 (907)
                      ++..|++++..|...++++|+.+|.|++|-+..+    .++..+...+-|++++|+++|+.+++|.
T Consensus       379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             cccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence            2348999999999999999999999999999877    5566667779999999999999766663

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.3e-27  Score=229.97  Aligned_cols=282  Identities=16%  Similarity=0.214  Sum_probs=232.2

Q ss_pred             eeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCE
Q 002564          260 QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF  338 (907)
Q Consensus       260 ~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i  338 (907)
                      +..+. +|...|.+++=+|+. ..+++|+.||.|++||+...    .+...+..|.+.|..+++..  ..++++|.|.+|
T Consensus        59 v~~L~-gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR----~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv  131 (433)
T KOG0268|consen   59 VGSLD-GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR----ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTV  131 (433)
T ss_pred             hhhcc-ccccccchhhcCcchhhhhhccccCceEEEEehhhh----hhhheeecccCceeeEEecc--cceEEecCCcce
Confidence            44454 899999999999987 68999999999999999766    46777889999999999986  679999999999


Q ss_pred             EEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeee
Q 002564          339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  418 (907)
Q Consensus       339 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~  418 (907)
                      +.|.+..+ ....                           +.+                                     
T Consensus       132 K~wk~~~~-p~~t---------------------------ilg-------------------------------------  146 (433)
T KOG0268|consen  132 KQWKIDGP-PLHT---------------------------ILG-------------------------------------  146 (433)
T ss_pred             eeeeccCC-ccee---------------------------eec-------------------------------------
Confidence            99987542 1111                           000                                     


Q ss_pred             cCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCe
Q 002564          419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGD  497 (907)
Q Consensus       419 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~  497 (907)
                           .+.+..+.-+..++.+++++.  .|.+||.+...++..+.        --...|.++.|+|.. ..|++|+.|+.
T Consensus       147 -----~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms--------wG~Dti~svkfNpvETsILas~~sDrs  211 (433)
T KOG0268|consen  147 -----KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS--------WGADSISSVKFNPVETSILASCASDRS  211 (433)
T ss_pred             -----cccccccccccccccccccCc--eeeecccccCCccceee--------cCCCceeEEecCCCcchheeeeccCCc
Confidence                 123333333444455555443  59999999888888875        456789999999976 56777789999


Q ss_pred             EEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-eeEEEeecCCCCeeeEEECCCCcEEEEEe
Q 002564          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (907)
Q Consensus       498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s  576 (907)
                      |.+||+..+.+++.......-+.++|+|++-.+++|++|..++.||+... .++....+|.+.|.++.|||.|+-+++||
T Consensus       212 IvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs  291 (433)
T KOG0268|consen  212 IVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS  291 (433)
T ss_pred             eEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence            99999999999999988888899999998888999999999999999865 56778899999999999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeEeeeC--CceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          577 MDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       577 ~Dg~I~vwd~~~~~~~~~~~~~--~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                      .|.+||||.+..+.-...+...  ..|.++.||.|.+|+++|+.|++ |++|.-+
T Consensus       292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n-vRlWka~  345 (433)
T KOG0268|consen  292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN-VRLWKAK  345 (433)
T ss_pred             ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc-eeeeecc
Confidence            9999999999988766665443  34999999999999999999996 9999854

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.5e-26  Score=227.06  Aligned_cols=284  Identities=19%  Similarity=0.291  Sum_probs=241.1

Q ss_pred             ccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC-EEEEEeCCCCEEEEEceec
Q 002564          268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQD  346 (907)
Q Consensus       268 ~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~-~l~s~~~dg~i~iwd~~~~  346 (907)
                      .++|+++.|+|..+.|++++.|+++++|.++....  ..+....-...||.+.+|.|+|. .+++++....+..||+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccC--hhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            46899999999999999999999999999987654  35566666678999999999998 8899999999999999765


Q ss_pred             ccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCC-CCC
Q 002564          347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE-NPT  425 (907)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~-~~~  425 (907)
                      +....-                                                                  +..+ ...
T Consensus       291 k~~k~~------------------------------------------------------------------~~~g~e~~  304 (514)
T KOG2055|consen  291 KVTKLK------------------------------------------------------------------PPYGVEEK  304 (514)
T ss_pred             cccccc------------------------------------------------------------------CCCCcccc
Confidence            432211                                                                  0001 124


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 002564          426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  505 (907)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  505 (907)
                      .+....+|++++++++.+..|.|.+....+++.+..+         .-.+.|..++|+.+++.|++++.+|.|.+||+..
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~---------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~  375 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF---------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ  375 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence            5778899999999999999999999999999999887         4678899999999999999999999999999999


Q ss_pred             CceeeeeecCcce--eEEEEeeCCCEEEEEeCCCeEEEEEccc------ceeEEEeecCCCCeeeEEECCCCcEEEEEe-
Q 002564          506 RDLKSRWEVGCSL--VKIVYHRVNGLLATVADDLVIRLFDVVA------LRMVRKFEGHTDRITDFCFSEDGKWLLSSG-  576 (907)
Q Consensus       506 ~~~~~~~~~~~~i--~~~~~s~~~~~la~~~~dg~I~v~d~~~------~~~~~~~~~h~~~I~~l~fspdg~~l~s~s-  576 (907)
                      ..+++++...+.+  +++|.++++.++|+|++.|.|.|||.++      .+++..+..-...|+++.|+||++.||.+| 
T Consensus       376 ~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  376 NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence            9999998777554  5677789999999999999999999764      356777777778899999999999998776 


Q ss_pred             -CCCcEEEEEcCCCceeeEeeeCC----ceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          577 -MDGSLRIWDVILARQIDAIHVDV----SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       577 -~Dg~I~vwd~~~~~~~~~~~~~~----~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                       .+..+|+-.+++......+....    .|+|++|||.|.+||.|..+|+ |.+|.+.
T Consensus       456 ~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr-v~l~kL~  512 (514)
T KOG2055|consen  456 VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR-VHLFKLH  512 (514)
T ss_pred             ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc-eeeEeec
Confidence             56789999999988887776543    2999999999999999999995 9999864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=7e-26  Score=223.07  Aligned_cols=278  Identities=17%  Similarity=0.293  Sum_probs=235.3

Q ss_pred             EEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeec
Q 002564          143 CIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS  222 (907)
Q Consensus       143 ~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~  222 (907)
                      ....|..  +.+++|+.|..+.++|..+++.+..|+||...|+.+.++|+...+++++.|-.|+||............. 
T Consensus       225 ld~~~s~--~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~-  301 (506)
T KOG0289|consen  225 LDIIPSS--SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRP-  301 (506)
T ss_pred             EeecCCC--CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccc-
Confidence            3345554  7899999999999999999999999999999999999999999999999999999999987776555555 


Q ss_pred             CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeec-ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCC
Q 002564          223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD  301 (907)
Q Consensus       223 ~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~  301 (907)
                      |.++|+.+..+|.|. ++++++.||+..+.|++++..+..... ...-.+++.+|+|||.++.+|..|+.+++||+..++
T Consensus       302 h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~  380 (506)
T KOG0289|consen  302 HEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT  380 (506)
T ss_pred             ccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence            489999999999999 899999999999999999998887762 123458999999999999999999999999988764


Q ss_pred             CCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeee
Q 002564          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (907)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  381 (907)
                          .+..+.+|+++|..++|+.+|-+|+++..|+.|++||++..+....+..                           
T Consensus       381 ----~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l---------------------------  429 (506)
T KOG0289|consen  381 ----NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL---------------------------  429 (506)
T ss_pred             ----ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec---------------------------
Confidence                4667789999999999999999999999999999999987654433321                           


Q ss_pred             cccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC--Cccc
Q 002564          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS--GISR  459 (907)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~--~~~~  459 (907)
                                                              .....+.++.|.+.|.++++++++=.|++++-.+  ....
T Consensus       430 ----------------------------------------~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~  469 (506)
T KOG0289|consen  430 ----------------------------------------DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI  469 (506)
T ss_pred             ----------------------------------------cccccceeEEEcCCCCeEEeecceeEEEEEecccccceee
Confidence                                                    1124689999999999999997777777776433  3333


Q ss_pred             eeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564          460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (907)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  503 (907)
                      ..+        ..|.+..+++.|....+++++++.|..++++.+
T Consensus       470 ~~~--------~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  470 KEL--------ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ehh--------hhcccccceeeecccceEEeeccchhheEEeec
Confidence            333        378889999999999999999999999988764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=3.7e-26  Score=251.29  Aligned_cols=291  Identities=20%  Similarity=0.255  Sum_probs=234.3

Q ss_pred             CCCCEEEEEEcCCCCEEEEEe--cCCeEEEEEccC------------CceEEEEeecCCCCEEEEEEecCCCCEEEEEeC
Q 002564          180 WGSSISSCVSSPALDVVAVGC--SDGKIHVHNVRY------------DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS  245 (907)
Q Consensus       180 h~~~I~~l~~sp~~~~la~g~--~dg~I~iwd~~~------------~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~  245 (907)
                      ++..|.++..+|+|..+|+|+  .||.++||+.+.            .+.+.+... |.+.|+|+.|+|||+ +||+|+.
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~-~lAsGSD   89 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGS-YLASGSD   89 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCC-eEeeccC
Confidence            356799999999999999999  899999998751            123344444 489999999999999 9999999


Q ss_pred             CCcEEEEECCC------------------ceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 002564          246 SGVISIWNLEK------------------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (907)
Q Consensus       246 dg~I~iwd~~~------------------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~  307 (907)
                      |+.|.||....                  -+....+. +|.+.|..++|+|++.+|++++.|++|.+|+..+.    ..+
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF----~~~  164 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF----ELL  164 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEEEEecccceEEEEccccc----eee
Confidence            99999999772                  13566677 89999999999999999999999999999976654    577


Q ss_pred             EeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccc
Q 002564          308 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  387 (907)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  387 (907)
                      ..+.+|.+.|..+.|.|-|++|++-+.|++|++|++..-.....+..+-                               
T Consensus       165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf-------------------------------  213 (942)
T KOG0973|consen  165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF-------------------------------  213 (942)
T ss_pred             eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch-------------------------------
Confidence            8889999999999999999999999999999999965433333221100                               


Q ss_pred             cccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCccceeee
Q 002564          388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----GGWIERFNLQSGISRGSYL  463 (907)
Q Consensus       388 ~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----dg~i~i~d~~~~~~~~~~~  463 (907)
                                                    .. .........+.|||||.+|++...    ...+.|.+-.+-+.-..+.
T Consensus       214 ------------------------------~~-~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv  262 (942)
T KOG0973|consen  214 ------------------------------EE-SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV  262 (942)
T ss_pred             ------------------------------hh-CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee
Confidence                                          00 011256788999999999998753    2367787776666555554


Q ss_pred             ccccccccCcCCcEEEEEEcCC-----CC------------EEEEEecCCeEEEEECCCCceeeeeec--CcceeEEEEe
Q 002564          464 DMSERSNYAHNGEVVGVACDST-----NT------------LMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYH  524 (907)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~s~~-----~~------------~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~s  524 (907)
                              +|.+++.++.|+|.     .+            .+++|+.|++|.||.....+++.....  ...|..++|+
T Consensus       263 --------GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWs  334 (942)
T KOG0973|consen  263 --------GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWS  334 (942)
T ss_pred             --------cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEc
Confidence                    99999999999871     12            678899999999999977776655432  3799999999


Q ss_pred             eCCCEEEEEeCCCeEEEEEcccc
Q 002564          525 RVNGLLATVADDLVIRLFDVVAL  547 (907)
Q Consensus       525 ~~~~~la~~~~dg~I~v~d~~~~  547 (907)
                      |||-.|.+++.||+|.++..+..
T Consensus       335 pdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  335 PDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             CCCCeEEEEecCCeEEEEEcchH
Confidence            99999999999999999988653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.2e-26  Score=239.60  Aligned_cols=346  Identities=19%  Similarity=0.278  Sum_probs=273.8

Q ss_pred             EEEEc-CCCCEEEEEecCCeEEEEEccCCce------EEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-
Q 002564          186 SCVSS-PALDVVAVGCSDGKIHVHNVRYDEE------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-  257 (907)
Q Consensus       186 ~l~~s-p~~~~la~g~~dg~I~iwd~~~~~~------~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-  257 (907)
                      .+..+ |.+++|++|+.||.|++|+......      +.++.. |...|..+....+|+ .|++++.|-+|++|+...+ 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCc
Confidence            33444 4567899999999999999875433      444544 488999999999998 7999999999999999887 


Q ss_pred             -eeeeeeecccccCeEEEEE-ecCCCEEEEEcCCCcEEEEEccCCCC------CcceeEecc-CCCCCCeEEEEecCCCE
Q 002564          258 -RLQSVIREAHDNAIISLHF-FANEPVLMSASADNSIKMWIFDTTDG------DPRLLRFRS-GHSAPPLCIRFYANGRH  328 (907)
Q Consensus       258 -~~~~~~~~~h~~~V~~l~~-~~~~~~l~s~~~d~~i~vw~~~~~~~------~~~~~~~~~-~h~~~v~~i~~~~~g~~  328 (907)
                       -+..++. .|...|.|+++ .++...+++||-|+.|.+||++....      .......+. |+..+|.+++..+.|..
T Consensus       107 ~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~  185 (735)
T KOG0308|consen  107 TFCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI  185 (735)
T ss_pred             chhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence             6777887 89999999999 78888999999999999999986632      111122233 88999999999999999


Q ss_pred             EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEee
Q 002564          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (907)
Q Consensus       329 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~  408 (907)
                      +++|+..+.+++||.++.+....+.                                                       
T Consensus       186 ivsGgtek~lr~wDprt~~kimkLr-------------------------------------------------------  210 (735)
T KOG0308|consen  186 IVSGGTEKDLRLWDPRTCKKIMKLR-------------------------------------------------------  210 (735)
T ss_pred             EEecCcccceEEeccccccceeeee-------------------------------------------------------
Confidence            9999999999999988766544432                                                       


Q ss_pred             eceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCE
Q 002564          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL  488 (907)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  488 (907)
                                   +|...|+++.+++||+.++++++||+|++||+....++.++.        .|...|.++..+|+-..
T Consensus       211 -------------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~--------vH~e~VWaL~~~~sf~~  269 (735)
T KOG0308|consen  211 -------------GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI--------VHKEGVWALQSSPSFTH  269 (735)
T ss_pred             -------------ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE--------eccCceEEEeeCCCcce
Confidence                         577999999999999999999999999999999999999986        89999999999999999


Q ss_pred             EEEEecCCeEEEEECCC-CceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECC
Q 002564          489 MISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (907)
Q Consensus       489 l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp  567 (907)
                      +++|+.||.|..=|+.+ .+....++...++..+..+...+-+-+++.|+.|+-|..+-               ...+++
T Consensus       270 vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~---------------~~~l~~  334 (735)
T KOG0308|consen  270 VYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP---------------DIALSV  334 (735)
T ss_pred             EEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc---------------cccccc
Confidence            99999999999999988 45555566678888888886555557788889998885431               114555


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564          568 DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       568 dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (907)
                      .|++.. -+.|....+.+.. ..+-..+.+..++...++-.|.+++.|-...|+ +.+||+
T Consensus       335 s~~~~~-~~T~~~~~~~~~~-~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gn-v~lwDI  392 (735)
T KOG0308|consen  335 SGDLDF-FSTDSNNHSCDLT-NTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGN-VALWDI  392 (735)
T ss_pred             CCCCCc-ccccCCCcccccc-CCCceeccCchhhhhhhhhcCcceEeeecCCCC-EEEEEe
Confidence            555444 2334444444432 234445555566777777778888888888884 889987

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=1.4e-26  Score=231.42  Aligned_cols=285  Identities=13%  Similarity=0.242  Sum_probs=243.6

Q ss_pred             ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEecc--CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEc
Q 002564          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (907)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~  343 (907)
                      .|..-|.++..+...++++||+ .|.|+|||+........ +..+.  .....+.++...|||+.|++|+.-.++.|||+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~P-vsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSP-VSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCc-cccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            5888899999999999999998 47899999976643322 22221  23567899999999999999999999999999


Q ss_pred             eecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCC
Q 002564          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (907)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~  423 (907)
                      ...........                                                                  ...
T Consensus       495 AapTprikael------------------------------------------------------------------tss  508 (705)
T KOG0639|consen  495 AAPTPRIKAEL------------------------------------------------------------------TSS  508 (705)
T ss_pred             cCCCcchhhhc------------------------------------------------------------------CCc
Confidence            76543211100                                                                  001


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (907)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  503 (907)
                      .....+++++||.+..+.++.||.|.|||+.+...++.|.        +|.+.+.||.++++|..|.|||-|.+||.||+
T Consensus       509 apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq--------GhtDGascIdis~dGtklWTGGlDntvRcWDl  580 (705)
T KOG0639|consen  509 APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDL  580 (705)
T ss_pred             chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc--------CCCCCceeEEecCCCceeecCCCccceeehhh
Confidence            1345678999999999999999999999999999999986        99999999999999999999999999999999


Q ss_pred             CCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEE
Q 002564          504 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI  583 (907)
Q Consensus       504 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~v  583 (907)
                      ..++.+...+..+.|.++.++|++.++|+|..++.+.|..... .....+.-|...|.++.|++.|+|+++.+.|..+..
T Consensus       581 regrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna  659 (705)
T KOG0639|consen  581 REGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA  659 (705)
T ss_pred             hhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhh
Confidence            9999999988999999999999999999999999999987753 345566779999999999999999999999999999


Q ss_pred             EEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564          584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       584 wd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (907)
                      |..+-|.-+...+..++|.++.+|-|.+|++|++.|.+ ..||.+
T Consensus       660 wrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkk-ATVYeV  703 (705)
T KOG0639|consen  660 WRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKK-ATVYEV  703 (705)
T ss_pred             ccCccccceeeccccCcceeeeeccCceEEEecCCCcc-eEEEEE
Confidence            99999999988888889999999999999999999974 666653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=7.5e-26  Score=227.28  Aligned_cols=301  Identities=10%  Similarity=0.163  Sum_probs=231.2

Q ss_pred             CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc----eEEEEeecCCCCEEEEEEecCCCCEEEEEeCC
Q 002564          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSMRGAVTALAFSSDGQPLLASGASS  246 (907)
Q Consensus       171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~----~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d  246 (907)
                      +..-..+++|+..|+++++.|.|-.+++|+.|..|++||+....    ..+.+.......|.+++|++.|. .+++.+..
T Consensus       157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~  235 (641)
T KOG0772|consen  157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGS  235 (641)
T ss_pred             ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecC
Confidence            34445678899999999999999999999999999999987432    22333333356899999999998 45555556


Q ss_pred             CcEEEEECCCceeeeeee-----------cccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEec--cC
Q 002564          247 GVISIWNLEKRRLQSVIR-----------EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFR--SG  312 (907)
Q Consensus       247 g~I~iwd~~~~~~~~~~~-----------~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--~~  312 (907)
                      ...+|+|-.........+           .+|...+++.+|+|..+ .+++++.||++++|+++........+...  .+
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g  315 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG  315 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence            789999966554443332           48999999999999764 89999999999999998766544444333  34


Q ss_pred             CCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccce
Q 002564          313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  392 (907)
Q Consensus       313 h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  392 (907)
                      ..-+++.++|++||+.|++|..||+|.+|+.........                                         
T Consensus       316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~-----------------------------------------  354 (641)
T KOG0772|consen  316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV-----------------------------------------  354 (641)
T ss_pred             cccCceeeecCCCcchhhhcccCCceeeeecCCcccccc-----------------------------------------
Confidence            456889999999999999999999999999743221111                                         


Q ss_pred             EEEeeCCceEEEEEeeeceecceeeecCCCCC--CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc-ceeeecccccc
Q 002564          393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENP--TAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERS  469 (907)
Q Consensus       393 ~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~  469 (907)
                                              +.....|.  ..|+|++||++|++|++-+.|+++++||+...+. +.....     
T Consensus       355 ------------------------~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg-----  405 (641)
T KOG0772|consen  355 ------------------------MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG-----  405 (641)
T ss_pred             ------------------------eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC-----
Confidence                                    01111222  4899999999999999999999999999976433 322221     


Q ss_pred             ccCcCCcEEEEEEcCCCCEEEEEe------cCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEE
Q 002564          470 NYAHNGEVVGVACDSTNTLMISAG------YHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLF  542 (907)
Q Consensus       470 ~~~h~~~v~~l~~s~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~  542 (907)
                       .....+-+.++|+|+.++|++|.      ..|.+.+||..+...+..+... ..|..+.|+|.=+.|.+|+.||.++||
T Consensus       406 -L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  406 -LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             -CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence             12334567889999999999986      3578999999998888888765 788999999999999999999999987


Q ss_pred             E
Q 002564          543 D  543 (907)
Q Consensus       543 d  543 (907)
                      =
T Consensus       485 Y  485 (641)
T KOG0772|consen  485 Y  485 (641)
T ss_pred             E
Confidence            3

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.6e-24  Score=191.89  Aligned_cols=297  Identities=19%  Similarity=0.297  Sum_probs=230.2

Q ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEcc------CC--------ceEEEEeecCCCCEEEEEEecCCCC
Q 002564          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR------YD--------EELVTFTHSMRGAVTALAFSSDGQP  238 (907)
Q Consensus       173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~------~~--------~~~~~~~~~~~~~v~~l~fs~dg~~  238 (907)
                      .+..+.. ...|.+++|+|.|.+.|+|+...+++|.-..      .+        ..+..-..+|++.|+|.+|+|+|+ 
T Consensus        25 ~i~~l~d-sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-  102 (350)
T KOG0641|consen   25 AINILED-SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-  102 (350)
T ss_pred             EEEEecc-hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-
Confidence            3444443 7789999999999999999999998886432      11        123444567899999999999999 


Q ss_pred             EEEEEeCCCcEEEEECCCceee-----eeeecccccCeEEEEEecC----CCEEEEEcCCCcEEEEEccCCCCCcceeEe
Q 002564          239 LLASGASSGVISIWNLEKRRLQ-----SVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRF  309 (907)
Q Consensus       239 ~l~sg~~dg~I~iwd~~~~~~~-----~~~~~~h~~~V~~l~~~~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  309 (907)
                      ++++|+.|.+|++.-.+...+.     ..+. -|.+.|..++|..+    +.+|++++. |..+||-.+.+.+  .-+..
T Consensus       103 liatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~ga-gdc~iy~tdc~~g--~~~~a  178 (350)
T KOG0641|consen  103 LIATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGA-GDCKIYITDCGRG--QGFHA  178 (350)
T ss_pred             eEEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCC-CcceEEEeecCCC--Cccee
Confidence            9999999999999876544332     2233 69999999999764    456777664 4455554444443  44667


Q ss_pred             ccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccc
Q 002564          310 RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW  389 (907)
Q Consensus       310 ~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  389 (907)
                      +.||++.|.++ |+-+|-.+++|++|.+|++||++-+..+..+....                                 
T Consensus       179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~---------------------------------  224 (350)
T KOG0641|consen  179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF---------------------------------  224 (350)
T ss_pred             ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcc---------------------------------
Confidence            78999988776 33478899999999999999998766555442210                                 


Q ss_pred             cceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccccc
Q 002564          390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (907)
Q Consensus       390 ~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~  469 (907)
                                                  ....-..+.|.++++.|.|+.+++|..|....+||+..+..++.|.      
T Consensus       225 ----------------------------~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~------  270 (350)
T KOG0641|consen  225 ----------------------------HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH------  270 (350)
T ss_pred             ----------------------------cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC------
Confidence                                        0000123679999999999999999999999999999999999985      


Q ss_pred             ccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC---c--eeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEc
Q 002564          470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR---D--LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  544 (907)
Q Consensus       470 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~--~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~  544 (907)
                        .|...|.++.|+|...++++++.|..|++-|+...   +  ..-.-++...+..+.|+|..--+++.+.|.++.+|-+
T Consensus       271 --phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  271 --PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             --CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence              89999999999999999999999999999998743   1  1222345578889999999989999999999999975


Q ss_pred             c
Q 002564          545 V  545 (907)
Q Consensus       545 ~  545 (907)
                      .
T Consensus       349 ~  349 (350)
T KOG0641|consen  349 N  349 (350)
T ss_pred             C
Confidence            4

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7e-26  Score=225.75  Aligned_cols=292  Identities=20%  Similarity=0.309  Sum_probs=230.8

Q ss_pred             CcEEEEecCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe-cCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564          161 GSLQLWNISTKKKLYEFKGW-GSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (907)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h-~~~I~~l~~sp~~~~la~g~-~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~  238 (907)
                      .++.+||+++|....++++- ...-.++..- .+.+++++. ....|.+|.+...........- .++|.+++-+|+|. 
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~-Pg~v~al~s~n~G~-   94 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVL-PGPVHALASSNLGY-   94 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhccc-ccceeeeecCCCce-
Confidence            45999999999999999874 1111112111 224566554 3468999998765544422222 58899999999998 


Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC-----CCCCcceeEeccCC
Q 002564          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-----TDGDPRLLRFRSGH  313 (907)
Q Consensus       239 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~-----~~~~~~~~~~~~~h  313 (907)
                      +|+.|+..|.|++|.+.+|.++..+. +|-..|+++.|+.|+.+++|||.||.|.+|.+..     .+.....+..+..|
T Consensus        95 ~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H  173 (476)
T KOG0646|consen   95 FLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH  173 (476)
T ss_pred             EEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence            78888799999999999999999997 9999999999999999999999999999997642     23355678888999


Q ss_pred             CCCCeEEEEecC--CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccc
Q 002564          314 SAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN  391 (907)
Q Consensus       314 ~~~v~~i~~~~~--g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  391 (907)
                      .-+|+.+...+.  ..+++|++.|.++++||+..+.....+.                                      
T Consensus       174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--------------------------------------  215 (476)
T KOG0646|consen  174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--------------------------------------  215 (476)
T ss_pred             cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--------------------------------------
Confidence            999999988763  4689999999999999997765443321                                      


Q ss_pred             eEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc--------ceeee
Q 002564          392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS--------RGSYL  463 (907)
Q Consensus       392 ~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~--------~~~~~  463 (907)
                                                     .+..+.+++++|-++.+++|+.+|.|.+.++.....        .....
T Consensus       216 -------------------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~  264 (476)
T KOG0646|consen  216 -------------------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE  264 (476)
T ss_pred             -------------------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccc
Confidence                                           137899999999999999999999999988754331        11122


Q ss_pred             ccccccccCcCC--cEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeee-cCcceeEEEEee
Q 002564          464 DMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHR  525 (907)
Q Consensus       464 ~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~s~  525 (907)
                      ........+|.+  +|+|++++-||.+|++|+.||.++|||+.+.++++++. ..++|+.+.+.|
T Consensus       265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence            222234468888  99999999999999999999999999999999999988 668888888765

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=9e-26  Score=235.13  Aligned_cols=241  Identities=21%  Similarity=0.334  Sum_probs=204.7

Q ss_pred             EEEEcccccceEEEEe-eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccE-EEEcCCCCCCEEEEEecCCcE
Q 002564           86 VATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPT-CIMHPDTYLNKVIVGSQEGSL  163 (907)
Q Consensus        86 ~~~~~~h~~~V~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~l~~~s~dg~i  163 (907)
                      -+.+.||...|..++. ++..++++|+||++++|+-..++...  ...+..+.+++.. .++.+.. ...+++|+.|.++
T Consensus         7 s~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~--~~~~~~~~g~i~~~i~y~e~~-~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLE--THAFEGPKGFIANSICYAESD-KGRLVVGGMDTTI   83 (745)
T ss_pred             EEEeccCccchheeEecCCeEEeecCCCCceeeeeccCccccc--ceecccCcceeeccceecccc-CcceEeecccceE
Confidence            4558999999999886 67789999999999999987766521  2334456666655 5555422 1469999999999


Q ss_pred             EEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEE
Q 002564          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG  243 (907)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg  243 (907)
                      .+|...+..+++++++|.+.|.|+....++. +++|+.|.++++|-.  ++....+.+| ...|.++++-|++.  +++|
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH-~asVWAv~~l~e~~--~vTg  157 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGH-TASVWAVASLPENT--YVTG  157 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCc-chheeeeeecCCCc--EEec
Confidence            9999999999999999999999999888886 999999999999975  4556666554 89999999999884  8899


Q ss_pred             eCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564          244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (907)
Q Consensus       244 ~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (907)
                      +.|.+|++|.-  ++.+.++. +|...|.++++.+++ .+++++.||.|+.|+++.     ..+....||+.-+.++...
T Consensus       158 saDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~  228 (745)
T KOG0301|consen  158 SADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISMA  228 (745)
T ss_pred             cCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEec
Confidence            99999999984  88899998 999999999999886 588999999999998843     4677778999999999988


Q ss_pred             cCCCEEEEEeCCCCEEEEEce
Q 002564          324 ANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       324 ~~g~~l~s~~~dg~i~iwd~~  344 (907)
                      .++..+++++.|+++++|+..
T Consensus       229 ~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  229 LSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             CCCCeEEEecCCceEEEeecC
Confidence            888899999999999999965

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3e-25  Score=209.66  Aligned_cols=279  Identities=19%  Similarity=0.331  Sum_probs=207.9

Q ss_pred             EEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcce
Q 002564          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL  306 (907)
Q Consensus       227 v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~  306 (907)
                      ..|+.|++.|. +||+|+.+|.|.|||+.+...-..+. +|..+|++++|+++|+.|+|++.|..|++||+..++.    
T Consensus        26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~----   99 (405)
T KOG1273|consen   26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP----   99 (405)
T ss_pred             cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc----
Confidence            78999999999 99999999999999999999888887 9999999999999999999999999999999987752    


Q ss_pred             eEeccCCCCCCeEEEEecCC-CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccc
Q 002564          307 LRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR  385 (907)
Q Consensus       307 ~~~~~~h~~~v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  385 (907)
                      ++.. ....+|+.+.|+|.. +..+.+-.+..-.+.++..                                        
T Consensus       100 l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~----------------------------------------  138 (405)
T KOG1273|consen  100 LKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD----------------------------------------  138 (405)
T ss_pred             eeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecC----------------------------------------
Confidence            2222 357899999999933 2333222221111111110                                        


Q ss_pred             cccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecc
Q 002564          386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM  465 (907)
Q Consensus       386 ~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~  465 (907)
                                                             ..-+.+..+++|..                           
T Consensus       139 ---------------------------------------~~h~~Lp~d~d~dl---------------------------  152 (405)
T KOG1273|consen  139 ---------------------------------------PKHSVLPKDDDGDL---------------------------  152 (405)
T ss_pred             ---------------------------------------CceeeccCCCcccc---------------------------
Confidence                                                   00111111111110                           


Q ss_pred             ccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC--cceeEEEEeeCCCEEEEEeCCCeEEEEE
Q 002564          466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFD  543 (907)
Q Consensus       466 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~dg~I~v~d  543 (907)
                              +....+..|++.|+++++|...|.+.++|..+.+++..++..  ..|.++.++..|+.++.-+.|..||.|+
T Consensus       153 --------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  153 --------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE  224 (405)
T ss_pred             --------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence                    011112267888999999999999999999999988887665  6889999999999999999999999999


Q ss_pred             cccce---------eEEEeec--CCCCeeeEEECCCCcEEEEEe-CCCcEEEEEcCCCceeeEeeeCCc--eEEEEECCC
Q 002564          544 VVALR---------MVRKFEG--HTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVS--ITALSLSPN  609 (907)
Q Consensus       544 ~~~~~---------~~~~~~~--h~~~I~~l~fspdg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~--v~~l~~spd  609 (907)
                      +..--         +.+++..  ..-.-.+++||.||.|++.++ .-..++||.-..|.+++.+.+...  ...+.|+|-
T Consensus       225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~  304 (405)
T KOG1273|consen  225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV  304 (405)
T ss_pred             hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence            86311         1111111  112345789999999998776 456799999999999999998763  889999999


Q ss_pred             CceEEEEEecCCeEEEeec
Q 002564          610 MDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       610 g~~lat~~~d~~~i~lW~~  628 (907)
                      ...+++.. .| .|++|..
T Consensus       305 rp~i~si~-sg-~v~iw~~  321 (405)
T KOG1273|consen  305 RPIIASIA-SG-VVYIWAV  321 (405)
T ss_pred             eeeeeecc-CC-ceEEEEe
Confidence            88888883 33 5999985

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=212.05  Aligned_cols=247  Identities=15%  Similarity=0.233  Sum_probs=212.8

Q ss_pred             EEEEcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEE
Q 002564           86 VATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL  165 (907)
Q Consensus        86 ~~~~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~i  165 (907)
                      +..+..|.++|++++.+|.++||||.|-+|+|||+.....    +..+..|.+.+..+.|.++...+.|++|+.||.|.+
T Consensus        36 lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q----lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ----LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             cccccccccceeEEEecceeEeccCCCCcEEEEeccchhh----hcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            4557899999999999999999999999999999999888    677777888888888888875568999999999999


Q ss_pred             EecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeC
Q 002564          166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS  245 (907)
Q Consensus       166 wd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~  245 (907)
                      |+....+++.++++|.+.|+.++.+|.+++-++.+.|+.+++||+-+|+.-......  ...+.+.|+|.|. .++.+..
T Consensus       112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~Gd-~F~v~~~  188 (362)
T KOG0294|consen  112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQGD-HFVVSGR  188 (362)
T ss_pred             EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCCC-EEEEEec
Confidence            999999999999999999999999999999999999999999999999877776654  3455699999999 5666654


Q ss_pred             CCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe--
Q 002564          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY--  323 (907)
Q Consensus       246 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~--  323 (907)
                       ..|-+|.+++......+.  ....+.++.|. ++..|++|+.|+.|++||-+..    .++..+.+|...|..+.+.  
T Consensus       189 -~~i~i~q~d~A~v~~~i~--~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~----~~~~~~~AH~~RVK~i~~~~~  260 (362)
T KOG0294|consen  189 -NKIDIYQLDNASVFREIE--NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD----TPLTEFLAHENRVKDIASYTN  260 (362)
T ss_pred             -cEEEEEecccHhHhhhhh--ccccceeeeec-CCceEEEecCCceEEEeccCCC----ccceeeecchhheeeeEEEec
Confidence             479999999888877775  33567777776 4558999999999999987653    5667778999999999965  


Q ss_pred             cCCCEEEEEeCCCCEEEEEceecc
Q 002564          324 ANGRHILSAGQDRAFRLFSVIQDQ  347 (907)
Q Consensus       324 ~~g~~l~s~~~dg~i~iwd~~~~~  347 (907)
                      |++.+|++++.||.|++||+....
T Consensus       261 ~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  261 PEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             CCceEEEEeccCceEEEEEccccc
Confidence            367899999999999999998763

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.3e-25  Score=209.65  Aligned_cols=280  Identities=17%  Similarity=0.230  Sum_probs=213.0

Q ss_pred             CCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEccC-CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 002564          179 GWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (907)
Q Consensus       179 ~h~~~I~~l~~sp-~~~~la~g~~dg~I~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~  256 (907)
                      .....|.+++||| ...+++.|+.||+||+|++.. |..+.+....+.++|.+++|+.||. .+++|+.|+.+++||+.+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccC
Confidence            3478899999999 455777999999999999986 4555555566689999999999998 899999999999999999


Q ss_pred             ceeeeeeecccccCeEEEEEecCCC--EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC
Q 002564          257 RRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ  334 (907)
Q Consensus       257 ~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~  334 (907)
                      ++....-  .|.++|.++.|.+...  .|+||+.|.+|+.||.+...    .+... .-.+.+.++..  ....++.+..
T Consensus       104 ~Q~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~----pv~t~-~LPeRvYa~Dv--~~pm~vVata  174 (347)
T KOG0647|consen  104 GQVSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN----PVATL-QLPERVYAADV--LYPMAVVATA  174 (347)
T ss_pred             CCeeeee--ecccceeEEEEecCCCcceeEecccccceeecccCCCC----eeeee-eccceeeehhc--cCceeEEEec
Confidence            9665544  6999999999998776  89999999999999887553    22222 22334444433  2447888889


Q ss_pred             CCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecc
Q 002564          335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE  414 (907)
Q Consensus       335 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~  414 (907)
                      ++.|.+|+++.+........                                                            
T Consensus       175 ~r~i~vynL~n~~te~k~~~------------------------------------------------------------  194 (347)
T KOG0647|consen  175 ERHIAVYNLENPPTEFKRIE------------------------------------------------------------  194 (347)
T ss_pred             CCcEEEEEcCCCcchhhhhc------------------------------------------------------------
Confidence            99999999876543221100                                                            


Q ss_pred             eeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccc---cCcCCcEEEEEEcCCCCEEEE
Q 002564          415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN---YAHNGEVVGVACDSTNTLMIS  491 (907)
Q Consensus       415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~s~~~~~l~s  491 (907)
                            ....-.++|+++-++....++|+-+|.+.+..+..+.....|.-...+..   ...-..|++|+|+|....|+|
T Consensus       195 ------SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT  268 (347)
T KOG0647|consen  195 ------SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT  268 (347)
T ss_pred             ------CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence                  01125688999999998889999999999999988744433321111110   011236889999999999999


Q ss_pred             EecCCeEEEEECCCCceeeee-ecCcceeEEEEeeCCCEEEEEe
Q 002564          492 AGYHGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVA  534 (907)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~  534 (907)
                      +|.||++.+||-.....+... .+..+|++.+|+.+|.++|.+.
T Consensus       269 aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  269 AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            999999999998876666554 4558999999999999888764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1e-25  Score=212.51  Aligned_cols=296  Identities=14%  Similarity=0.244  Sum_probs=244.8

Q ss_pred             eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (907)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd  209 (907)
                      ++.+.+|...++.++.....  +.+.+++.|.+-+||.+++|+|+.++.||.+.|+++.|++.+.++++++.|++.+||.
T Consensus       141 vre~~GHkDGiW~Vaa~~tq--pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQ--PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             hhhhcccccceeeehhhcCC--cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            56677787777777766655  6889999999999999999999999999999999999999999999999999999996


Q ss_pred             cc------C------------------------------C----ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcE
Q 002564          210 VR------Y------------------------------D----EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (907)
Q Consensus       210 ~~------~------------------------------~----~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I  249 (907)
                      ..      .                              +    .++..+.+ |.+.|.++.|...|+ .+++++.|.+.
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~-Q~vTaSWDRTA  296 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQ-QMVTASWDRTA  296 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcc-eeeeeeccccc
Confidence            21      0                              0    12344555 478899999999898 89999999999


Q ss_pred             EEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEE
Q 002564          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (907)
Q Consensus       250 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l  329 (907)
                      .+||++++.++..+. +|....+.++-+|..+++++++.|.+.++||+...   ...+..+.||...|+++.|..+. .+
T Consensus       297 nlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea---I~sV~VFQGHtdtVTS~vF~~dd-~v  371 (481)
T KOG0300|consen  297 NLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---IQSVAVFQGHTDTVTSVVFNTDD-RV  371 (481)
T ss_pred             eeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhh---cceeeeecccccceeEEEEecCC-ce
Confidence            999999999999998 99999999999999999999999999999999843   24567788999999999999754 79


Q ss_pred             EEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeee
Q 002564          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (907)
Q Consensus       330 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~  409 (907)
                      ++|+.|.+|++||+++......                                          +.              
T Consensus       372 VSgSDDrTvKvWdLrNMRsplA------------------------------------------TI--------------  395 (481)
T KOG0300|consen  372 VSGSDDRTVKVWDLRNMRSPLA------------------------------------------TI--------------  395 (481)
T ss_pred             eecCCCceEEEeeeccccCcce------------------------------------------ee--------------
Confidence            9999999999999876432110                                          00              


Q ss_pred             ceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC--C
Q 002564          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--T  487 (907)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~--~  487 (907)
                                  ...+++..++++..+..+++--.+..|++||+......+..    .....+|...|+|.+|..+.  .
T Consensus       396 ------------RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP----rtsRqgHrRMV~c~AW~eehp~c  459 (481)
T KOG0300|consen  396 ------------RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP----RTSRQGHRRMVTCCAWLEEHPAC  459 (481)
T ss_pred             ------------ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC----cccccccceeeeeeeccccCccc
Confidence                        01267888999999999999999999999999865443322    11225899999999997544  3


Q ss_pred             EEEEEecCCeEEEEECCCC
Q 002564          488 LMISAGYHGDIKVWDFKGR  506 (907)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~  506 (907)
                      -|+++|.|..+.-|.+...
T Consensus       460 nLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  460 NLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccccccccceeeeeEeccc
Confidence            5789999999999998754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.6e-25  Score=221.19  Aligned_cols=299  Identities=17%  Similarity=0.316  Sum_probs=238.5

Q ss_pred             eeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEE-EE----------------E-cCCCCCEEEEEEcCC
Q 002564          131 GHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKL-YE----------------F-KGWGSSISSCVSSPA  192 (907)
Q Consensus       131 ~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~----------------~-~~h~~~I~~l~~sp~  192 (907)
                      ..+..|...+.+++++|+.  .++++++.+|+|.-|++.+|+.. +.                - ++|...|.+++.|+|
T Consensus       136 ~~~~~H~~s~~~vals~d~--~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D  213 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDD--KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD  213 (479)
T ss_pred             eeeccccCcceEEEeeccc--cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence            4455677778889999999  89999999999999999888744 11                1 267889999999999


Q ss_pred             CCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeE
Q 002564          193 LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII  272 (907)
Q Consensus       193 ~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~  272 (907)
                      |+|||+|+.|..|.||+.++.+.+..+.+| .+.|.+++|..... -|++++.|+.|++|+++....+.++. +|...|.
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~  290 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLSYVETLY-GHQDGVL  290 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhhccccc-ccceeeeeeecCcc-ceeeeecCCceEEEehhHhHHHHHHh-CCcccee
Confidence            999999999999999999999999998876 89999999987655 78999999999999999999999998 9999999


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceee
Q 002564          273 SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL  352 (907)
Q Consensus       273 ~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~  352 (907)
                      ++....-++.+-+|+.|+++++|++...+   +  ..+.+|.+.+-|++|-.+ .++++|+.+|.|.+|++.+.+.....
T Consensus       291 ~IdaL~reR~vtVGgrDrT~rlwKi~ees---q--lifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  291 GIDALSRERCVTVGGRDRTVRLWKIPEES---Q--LIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             eechhcccceEEeccccceeEEEeccccc---e--eeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence            99999988888888899999999984332   2  234588899999999854 58999999999999999877766554


Q ss_pred             chhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEE
Q 002564          353 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI  432 (907)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~  432 (907)
                      ...+...                                                        .......++..|++++.
T Consensus       365 ~~AHgv~--------------------------------------------------------~~~~~~~~~~Witsla~  388 (479)
T KOG0299|consen  365 RLAHGVI--------------------------------------------------------PELDPVNGNFWITSLAV  388 (479)
T ss_pred             ecccccc--------------------------------------------------------CCccccccccceeeeEe
Confidence            3321100                                                        00001122358999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE-ecCCeEEEE
Q 002564          433 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVW  501 (907)
Q Consensus       433 s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iw  501 (907)
                      .|..+.+++|+.+|.|++|-+..+.....+..     ...-.+-|++++|+++|+.+++| +....+--|
T Consensus       389 i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~-----~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  389 IPGSDLLASGSWSGCVRLWKIEDGLRAINLLY-----SLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             cccCceEEecCCCCceEEEEecCCccccceee-----ecccccEEEEEEEccCCCEEEEeccccccccee
Confidence            99999999999999999999988833211110     02467889999999999966554 444444444

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=1.3e-24  Score=237.93  Aligned_cols=231  Identities=17%  Similarity=0.228  Sum_probs=183.6

Q ss_pred             EEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEccCCc-------eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCC
Q 002564          176 EFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE-------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (907)
Q Consensus       176 ~~~~h~~~I~~l~~sp-~~~~la~g~~dg~I~iwd~~~~~-------~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg  247 (907)
                      .+.+|.+.|++++|+| ++++|++|+.||+|++||+.++.       .+..+..| ...|.+++|+|++..+|++|+.|+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCCC
Confidence            4779999999999999 88999999999999999997653       35556554 789999999998755999999999


Q ss_pred             cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCC-CeEEEEecCC
Q 002564          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYANG  326 (907)
Q Consensus       248 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~g  326 (907)
                      .|+|||+.+++....+. +|...|.+++|+|++.+|++++.|+.|++||+...    ..+....+|.+. +..+.|.+++
T Consensus       149 tVrIWDl~tg~~~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg----~~v~tl~~H~~~~~~~~~w~~~~  223 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG----TIVSSVEAHASAKSQRCLWAKRK  223 (493)
T ss_pred             EEEEEECCCCeEEEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC----cEEEEEecCCCCcceEEEEcCCC
Confidence            99999999999888887 89999999999999999999999999999998764    355666788765 4577888888


Q ss_pred             CEEEEEe----CCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceE
Q 002564          327 RHILSAG----QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (907)
Q Consensus       327 ~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v  402 (907)
                      ..+++++    .|+.|++||+++........                                                 
T Consensus       224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~-------------------------------------------------  254 (493)
T PTZ00421        224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTV-------------------------------------------------  254 (493)
T ss_pred             CeEEEEecCCCCCCeEEEEeCCCCCCceeEe-------------------------------------------------
Confidence            7887765    47899999986533211100                                                 


Q ss_pred             EEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEE
Q 002564          403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA  481 (907)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  481 (907)
                         +              ......+....++++++++++|+ .||.|++|++.++.......       ..+..++.+++
T Consensus       255 ---~--------------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~-------~~s~~~~~g~~  310 (493)
T PTZ00421        255 ---D--------------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS-------YSSVEPHKGLC  310 (493)
T ss_pred             ---c--------------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee-------ccCCCCCcceE
Confidence               0              01113455667899999999887 59999999999887665543       24556677788


Q ss_pred             EcCC
Q 002564          482 CDST  485 (907)
Q Consensus       482 ~s~~  485 (907)
                      +.|.
T Consensus       311 ~~pk  314 (493)
T PTZ00421        311 MMPK  314 (493)
T ss_pred             eccc
Confidence            7774

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=1.7e-24  Score=237.61  Aligned_cols=250  Identities=15%  Similarity=0.208  Sum_probs=193.4

Q ss_pred             EecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEEccCCc--------eEEEEeecCCCCE
Q 002564          157 GSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDE--------ELVTFTHSMRGAV  227 (907)
Q Consensus       157 ~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~~~~--------~~~~~~~~~~~~v  227 (907)
                      |+..+.+++|+......+..+.+|.+.|.+++|+|+ +++||+|+.||.|+|||+.++.        .+..+.. |...|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence            556788999999888889999999999999999997 7899999999999999998643        2234444 47899


Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 002564          228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (907)
Q Consensus       228 ~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~  307 (907)
                      .+++|+|++..++++++.|+.|++||+.+++....+.  |...|.+++|+|+|.+|++++.|+.|++||+...    ..+
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----~~i  202 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----EIA  202 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC----cEE
Confidence            9999999998677899999999999999998777765  6678999999999999999999999999998765    455


Q ss_pred             EeccCCCCCCeEEE-----EecCCCEEEEEeCCC----CEEEEEceecc-cceeechhhhhHHHhhccchhhhcccCcee
Q 002564          308 RFRSGHSAPPLCIR-----FYANGRHILSAGQDR----AFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVI  377 (907)
Q Consensus       308 ~~~~~h~~~v~~i~-----~~~~g~~l~s~~~dg----~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  377 (907)
                      ..+.+|.+.+....     |++++.++++++.|+    .|++||++... ......                        
T Consensus       203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~------------------------  258 (568)
T PTZ00420        203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS------------------------  258 (568)
T ss_pred             EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE------------------------
Confidence            67788988764433     347888999988774    79999987422 111100                        


Q ss_pred             EeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 002564          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  457 (907)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~  457 (907)
                                                   .             ......+......++|.++++|..|+.|++|++..+.
T Consensus       259 -----------------------------l-------------d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        259 -----------------------------I-------------DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             -----------------------------e-------------cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence                                         0             0111333334445678999999999999999998764


Q ss_pred             cceeeeccccccccCcCCcEEEEEEcCCC
Q 002564          458 SRGSYLDMSERSNYAHNGEVVGVACDSTN  486 (907)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  486 (907)
                      ... +.      ...+..++.+++|.|..
T Consensus       297 ~~~-l~------~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        297 IRK-VN------EYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEe-ec------ccccCCCccceEEcccc
Confidence            222 21      12466788899999864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=8.1e-25  Score=207.18  Aligned_cols=274  Identities=15%  Similarity=0.251  Sum_probs=222.2

Q ss_pred             EEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q 002564          218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF  297 (907)
Q Consensus       218 ~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~  297 (907)
                      .+.......|+++.|+|.+. .|++++.||.+++||.....+...+.  |..++.+++|.+ ...+++|+.||.|+.+|+
T Consensus         7 ~l~npP~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen    7 ELENPPEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL   82 (323)
T ss_pred             ccCCCChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEeccCceEEEEEe
Confidence            34445567899999998888 66677799999999999987777776  999999999987 457999999999999999


Q ss_pred             cCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCcee
Q 002564          298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  377 (907)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  377 (907)
                      .+...     .....|..++.|+.+++....+++|+.|++|++||.+.......+.+                       
T Consensus        83 n~~~~-----~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-----------------------  134 (323)
T KOG1036|consen   83 NTGNE-----DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-----------------------  134 (323)
T ss_pred             cCCcc-----eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-----------------------
Confidence            87643     33457999999999999778999999999999999876333222211                       


Q ss_pred             EeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 002564          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  457 (907)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~  457 (907)
                                                                    ...|.++  +-.|+.|++|+.+..+.+||+.+..
T Consensus       135 ----------------------------------------------~kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen  135 ----------------------------------------------GKKVYCM--DVSGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             ----------------------------------------------CceEEEE--eccCCEEEEeecCceEEEEEccccc
Confidence                                                          1334444  4458899999999999999998765


Q ss_pred             cceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC----ceeeeeecC----------cceeEEEE
Q 002564          458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG----------CSLVKIVY  523 (907)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~----------~~i~~~~~  523 (907)
                      ......      ...-+-.+.++++-|++.-.+.++-||.|.+=.++..    +....++.|          .+|++++|
T Consensus       167 ~~~q~r------eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F  240 (323)
T KOG1036|consen  167 EPFQRR------ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF  240 (323)
T ss_pred             chhhhc------cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence            544221      1355678999999998888999999999998777655    222333332          68999999


Q ss_pred             eeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeC
Q 002564          524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  577 (907)
Q Consensus       524 s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~  577 (907)
                      ||-.+.+|+|+.||.|.+||+.+.+.+..+......|.+++|+.||..||.++.
T Consensus       241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999999999999999999999999999999888888999999999999998874

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=8.6e-25  Score=206.86  Aligned_cols=292  Identities=19%  Similarity=0.260  Sum_probs=213.2

Q ss_pred             cCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceee--eeee-cccccCeEEEEEecCCCEE-EEEcCCCcEEEEEc
Q 002564          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ--SVIR-EAHDNAIISLHFFANEPVL-MSASADNSIKMWIF  297 (907)
Q Consensus       222 ~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~--~~~~-~~h~~~V~~l~~~~~~~~l-~s~~~d~~i~vw~~  297 (907)
                      +|.+.|++++|+.||+ .|++++.|+.|++|+++.....  ..++ .-..+..+.+.|.||.+-+ +++-..+++++|.+
T Consensus        84 gH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~  162 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL  162 (420)
T ss_pred             ccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence            4588999999999999 8999999999999999764211  1111 0112345889999998744 44555678999987


Q ss_pred             cCCCCCcc--------eeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhh
Q 002564          298 DTTDGDPR--------LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  369 (907)
Q Consensus       298 ~~~~~~~~--------~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (907)
                      ...+...-        -+.....|..++..+-...++.+|++++.|..|.+|++. ++....+.                
T Consensus       163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id----------------  225 (420)
T KOG2096|consen  163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID----------------  225 (420)
T ss_pred             eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec----------------
Confidence            65432111        111234567777788778889999999999999999987 44333322                


Q ss_pred             hcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 002564          370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  449 (907)
Q Consensus       370 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~  449 (907)
                                                                          .+...-+..++||||++++++.-.-.|.
T Consensus       226 ----------------------------------------------------tnq~~n~~aavSP~GRFia~~gFTpDVk  253 (420)
T KOG2096|consen  226 ----------------------------------------------------TNQSSNYDAAVSPDGRFIAVSGFTPDVK  253 (420)
T ss_pred             ----------------------------------------------------cccccccceeeCCCCcEEEEecCCCCce
Confidence                                                                1224456789999999999999999999


Q ss_pred             EEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC-------ceeeeee-----cCcc
Q 002564          450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-------DLKSRWE-----VGCS  517 (907)
Q Consensus       450 i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~-----~~~~  517 (907)
                      +|.+--++.-..........+.+|...|..++|+++.+.+++.+.||++++||.+-.       +.++...     ..+.
T Consensus       254 VwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~  333 (420)
T KOG2096|consen  254 VWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE  333 (420)
T ss_pred             EEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence            998632211100000011124699999999999999999999999999999997521       2222221     1244


Q ss_pred             eeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee-cCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564          518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (907)
Q Consensus       518 i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~-~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd  585 (907)
                      ...+.++|+|+.||++.. ..+++|..++++....++ .|...|++|+|+++|++++|++ |..+++..
T Consensus       334 p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  334 PVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             ceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            558999999999988754 589999999988777765 5899999999999999999986 67788876

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-23  Score=189.56  Aligned_cols=290  Identities=16%  Similarity=0.243  Sum_probs=227.9

Q ss_pred             cccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC----------CCCccee-EeccCCCCCCeEEEEecCCCEEEEEeCC
Q 002564          267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTT----------DGDPRLL-RFRSGHSAPPLCIRFYANGRHILSAGQD  335 (907)
Q Consensus       267 h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~----------~~~~~~~-~~~~~h~~~v~~i~~~~~g~~l~s~~~d  335 (907)
                      ....|.+++|+|.|.+.++|+...+.++..+..-          ...+..+ +.-+.|.+.|.|.+|+|+|.++++|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            5678999999999999999999999998854321          1112222 3335688999999999999999999999


Q ss_pred             CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecce
Q 002564          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (907)
Q Consensus       336 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~  415 (907)
                      .+|++.....+.....-                                                              +
T Consensus       111 k~ik~l~fn~dt~~~~g--------------------------------------------------------------~  128 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATG--------------------------------------------------------------H  128 (350)
T ss_pred             ceEEEEecccccccccC--------------------------------------------------------------c
Confidence            99999876544332110                                                              0


Q ss_pred             eeecCCCCCCceEEEEEcCC----CCEEEEEe-CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEE
Q 002564          416 ILRPCPENPTAVKACTISAC----GNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI  490 (907)
Q Consensus       416 ~~~~~~~~~~~v~~~~~s~~----g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  490 (907)
                      .+. ..-|.+.|..++|-.+    |..+++++ .|-.|++-|...|+....+.        +|.+.|.++. +-+|-+++
T Consensus       129 dle-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s--------ghtghilaly-swn~~m~~  198 (350)
T KOG0641|consen  129 DLE-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS--------GHTGHILALY-SWNGAMFA  198 (350)
T ss_pred             cee-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec--------CCcccEEEEE-EecCcEEE
Confidence            000 0123467777877543    34555544 45688888999999888875        9999998874 44678999


Q ss_pred             EEecCCeEEEEECCCCceeeeeecC--------cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeee
Q 002564          491 SAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD  562 (907)
Q Consensus       491 s~~~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~  562 (907)
                      +|+.|.+|++||+.-..++.++...        +.+.+++..|.|++|++|..|....+||++.++.++.|..|...|.+
T Consensus       199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~  278 (350)
T KOG0641|consen  199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRC  278 (350)
T ss_pred             ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeE
Confidence            9999999999999988887776432        67899999999999999999999999999999999999999999999


Q ss_pred             EEECCCCcEEEEEeCCCcEEEEEcCCC---c-eeeE-eeeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          563 FCFSEDGKWLLSSGMDGSLRIWDVILA---R-QIDA-IHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       563 l~fspdg~~l~s~s~Dg~I~vwd~~~~---~-~~~~-~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                      +.|||...|+.+++.|..|++-|++..   + .+.. -++...+..+.|+|..--+++.+.|. ++.+|...
T Consensus       279 vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk-t~tlwa~~  349 (350)
T KOG0641|consen  279 VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK-TATLWALN  349 (350)
T ss_pred             EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc-eEEEeccC
Confidence            999999999999999999999998732   1 1122 23344588899999988888888898 79999853

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=9.4e-25  Score=227.59  Aligned_cols=283  Identities=19%  Similarity=0.328  Sum_probs=232.5

Q ss_pred             CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEE--EEeecCCCCEEE-EEEecCCCCEEEEEeCCC
Q 002564          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV--TFTHSMRGAVTA-LAFSSDGQPLLASGASSG  247 (907)
Q Consensus       171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~--~~~~~~~~~v~~-l~fs~dg~~~l~sg~~dg  247 (907)
                      -+.-+.+.+|..-|..++..+.. .+++++.||++++|+-..++.+.  .+..+ .+.|.. ++|-+..+..+++|+.|+
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~-~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGP-KGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccC-cceeeccceeccccCcceEeecccc
Confidence            45677899999999999887665 78999999999999987666544  23333 566655 777753333699999999


Q ss_pred             cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC
Q 002564          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (907)
Q Consensus       248 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~  327 (907)
                      +|.+|.+.+..+...+. +|...|.+++...++. +++||.|.++++|...      .+...+.+|...|+++...|++ 
T Consensus        82 ~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~------~l~~~l~gH~asVWAv~~l~e~-  152 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG------ELVYSLQGHTASVWAVASLPEN-  152 (745)
T ss_pred             eEEEEecCCCCchhhhh-ccccceeeeecCCcCc-eEecccccceEEecch------hhhcccCCcchheeeeeecCCC-
Confidence            99999999999999999 9999999999888886 9999999999999654      3455578999999999999987 


Q ss_pred             EEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEe
Q 002564          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (907)
Q Consensus       328 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~  407 (907)
                      .++||+.|.+|++|.-.                                                               
T Consensus       153 ~~vTgsaDKtIklWk~~---------------------------------------------------------------  169 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKGG---------------------------------------------------------------  169 (745)
T ss_pred             cEEeccCcceeeeccCC---------------------------------------------------------------
Confidence            89999999999999631                                                               


Q ss_pred             eeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC
Q 002564          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (907)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  487 (907)
                                                                       .....+        .+|.+.|+++++-+++.
T Consensus       170 -------------------------------------------------~~l~tf--------~gHtD~VRgL~vl~~~~  192 (745)
T KOG0301|consen  170 -------------------------------------------------TLLKTF--------SGHTDCVRGLAVLDDSH  192 (745)
T ss_pred             -------------------------------------------------chhhhh--------ccchhheeeeEEecCCC
Confidence                                                             112222        38999999999998764


Q ss_pred             EEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECC
Q 002564          488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (907)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp  567 (907)
                       +++++.||.|+.|++....+.....+..-+.++....+++.++++++|++++||+..  ++++.+.-..-.|.++.+-+
T Consensus       193 -flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~  269 (745)
T KOG0301|consen  193 -FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL  269 (745)
T ss_pred             -eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee
Confidence             789999999999999555555555566889999988899999999999999999987  77777775566899999988


Q ss_pred             CCcEEEEEeCCCcEEEEEcCC
Q 002564          568 DGKWLLSSGMDGSLRIWDVIL  588 (907)
Q Consensus       568 dg~~l~s~s~Dg~I~vwd~~~  588 (907)
                      +|. |++|+.||.||||....
T Consensus       270 NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  270 NGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CCC-EEEeccCceEEEEEecc
Confidence            886 66788999999998763

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=3.6e-24  Score=234.52  Aligned_cols=233  Identities=12%  Similarity=0.180  Sum_probs=185.8

Q ss_pred             EEcccccceEEEEe---eCCEEEEEecCCcEEEEecCCCCc---cccceeeEecCCCcccEEEEcCCCCCCEEEEEecCC
Q 002564           88 TWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEE---NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG  161 (907)
Q Consensus        88 ~~~~h~~~V~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg  161 (907)
                      .+.||.+.|.++.|   ++++|++++.|++|++||+.++..   ...++..+..|...+..+.|+|++. ++|++|+.|+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADM  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCC
Confidence            37899999999997   468999999999999999987542   1234667778888888999999863 6899999999


Q ss_pred             cEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (907)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~  241 (907)
                      +|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..+....+..+.|.+++..++.
T Consensus       149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT  228 (493)
T ss_pred             EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999988887764445667889998873444


Q ss_pred             EE---eCCCcEEEEECCCce-eeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEe-ccCCCC
Q 002564          242 SG---ASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRF-RSGHSA  315 (907)
Q Consensus       242 sg---~~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~-~~~h~~  315 (907)
                      +|   +.|+.|++||+++.. ........+...+....|++++++|++++ .|+.|++|++....    +... ...+..
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~----~~~~~~~~s~~  304 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER----LTFCSSYSSVE  304 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc----eEEEeeccCCC
Confidence            44   247899999998764 33333322344566678899999999887 59999999987542    2222 223556


Q ss_pred             CCeEEEEecC
Q 002564          316 PPLCIRFYAN  325 (907)
Q Consensus       316 ~v~~i~~~~~  325 (907)
                      ++..++|.|.
T Consensus       305 ~~~g~~~~pk  314 (493)
T PTZ00421        305 PHKGLCMMPK  314 (493)
T ss_pred             CCcceEeccc
Confidence            7788888874

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.94  E-value=1.9e-24  Score=221.75  Aligned_cols=168  Identities=16%  Similarity=0.240  Sum_probs=130.8

Q ss_pred             EEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEEccCCceEE-----EEeecCCCCEEEEEEecCCCCEEEEEeCC
Q 002564          173 KLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELV-----TFTHSMRGAVTALAFSSDGQPLLASGASS  246 (907)
Q Consensus       173 ~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~~~~~~~-----~~~~~~~~~v~~l~fs~dg~~~l~sg~~d  246 (907)
                      .+..+.+|+..|+.+.|+|- ..+||+|+.|..|+||.+..|-...     ....+.+-.|.++.|+|....+|+++. .
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a-~  149 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA-H  149 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc-C
Confidence            45567899999999999994 4589999999999999998443211     112333558899999997775777765 7


Q ss_pred             CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCC-CeEEEEecC
Q 002564          247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYAN  325 (907)
Q Consensus       247 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~  325 (907)
                      |.++|||+.+++.+..+. +|...|.+..|+.||.+|++++.|..|+|||-+...   +.++...+|.+. -..+.|..+
T Consensus       150 g~v~i~D~stqk~~~el~-~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~---~piQ~te~H~~~rdsRv~w~Gn  225 (1012)
T KOG1445|consen  150 GSVYITDISTQKTAVELS-GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASM---EPIQTTEGHGGMRDSRVLWAGN  225 (1012)
T ss_pred             ceEEEEEcccCceeeccc-CCchhhhccccccCCceEeeecCCcceEEeCCccCC---Cccccccccccchhheeeeccc
Confidence            899999999999999998 999999999999999999999999999999866543   345555677653 345677766


Q ss_pred             CCEEEEEeCC----CCEEEEEcee
Q 002564          326 GRHILSAGQD----RAFRLFSVIQ  345 (907)
Q Consensus       326 g~~l~s~~~d----g~i~iwd~~~  345 (907)
                      -..|++.+.+    +.+++||.+.
T Consensus       226 ~~rlisTGF~~~R~reV~~~Dtr~  249 (1012)
T KOG1445|consen  226 WERLISTGFTTKRIREVRAYDTRK  249 (1012)
T ss_pred             hhhhhhcccchhhheeeeeeeccc
Confidence            6677776644    5678888754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.5e-24  Score=229.07  Aligned_cols=278  Identities=14%  Similarity=0.316  Sum_probs=229.3

Q ss_pred             cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564          265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       265 ~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (907)
                      .+|....+.++|.|+|.+|++++.||.|++|+.......+..+.   .+...|.+++..  +.+|++|+.+++|.+|.+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---ISGELVSSIACY--SNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---ccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence            37999999999999999999999999999998765534444432   266777777765  4599999999999999887


Q ss_pred             ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCC
Q 002564          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (907)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~  424 (907)
                      .+..-..+..                                                                    ..
T Consensus        85 s~~~~~iL~R--------------------------------------------------------------------ft   96 (933)
T KOG1274|consen   85 SGEEDTILAR--------------------------------------------------------------------FT   96 (933)
T ss_pred             CCCccceeee--------------------------------------------------------------------ee
Confidence            6543322110                                                                    12


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  504 (907)
                      .++++++++.+|++++.|+.|-.|++.++........+.        +|.++|.++.++|.+.+||+.+.||.|++||+.
T Consensus        97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr--------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~  168 (933)
T KOG1274|consen   97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR--------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ  168 (933)
T ss_pred             ccceEEEEecCCcEEEeecCceeEEEEeccccchheeec--------ccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence            678999999999999999999999999999988888875        999999999999999999999999999999999


Q ss_pred             CCceeeeeec---------CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeec--CCCCeeeEEECCCCcEEE
Q 002564          505 GRDLKSRWEV---------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLL  573 (907)
Q Consensus       505 ~~~~~~~~~~---------~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~--h~~~I~~l~fspdg~~l~  573 (907)
                      ++.+..++..         ...+..++|+|+|..+++.+.|+.|.+|+..++.....+..  |...+..++|||+|+|||
T Consensus       169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA  248 (933)
T KOG1274|consen  169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA  248 (933)
T ss_pred             cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence            9987766643         25677899999999999999999999999999999888764  445599999999999999


Q ss_pred             EEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEee
Q 002564          574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       574 s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~  627 (907)
                      +++.||.|.|||+++   ...-.....|++++|.|++.-+-.....+ ...+|-
T Consensus       249 As~~~g~I~vWnv~t---~~~~~~~~~Vc~~aw~p~~n~it~~~~~g-~~~~~~  298 (933)
T KOG1274|consen  249 ASTLDGQILVWNVDT---HERHEFKRAVCCEAWKPNANAITLITALG-TLGVSP  298 (933)
T ss_pred             eeccCCcEEEEeccc---chhccccceeEEEecCCCCCeeEEEeecc-ccccCh
Confidence            999999999999998   22223344599999999998877666665 344443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.5e-25  Score=204.21  Aligned_cols=255  Identities=18%  Similarity=0.251  Sum_probs=212.0

Q ss_pred             CCeEEEEEcCc--ceEEEecCCCCcceEEEEEecC---eEEEEEcCe-EEEEeCC---eeEEEEcccccceEEEEe---e
Q 002564           35 GKAFHIYNCAK--LNLVLVGPQLPKKIRALASYRD---YTFAAYGNH-IAVVKRA---HQVATWSRHSAKVNLLLL---F  102 (907)
Q Consensus        35 ~~~v~iwd~~~--~~~~~~~~~~~~~I~~la~~~~---~~~~a~g~~-I~vw~~~---~~~~~~~~h~~~V~~l~~---~  102 (907)
                      .|.+.|.++..  +-.+...-.-...+..++++++   ..++|+|+. +++||..   ++++.++.|...|.++.+   .
T Consensus        37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~  116 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVR  116 (311)
T ss_pred             CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecccccc
Confidence            57788888863  3233333345677888999876   445556544 9999953   567889999999999997   4


Q ss_pred             CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCC
Q 002564          103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS  182 (907)
Q Consensus       103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~  182 (907)
                      +..++++|-|++|++|+..-...    +.++..+...+...+|+|... +.+++++.|+++++||++.......+..|..
T Consensus       117 r~~~ltsSWD~TiKLW~~~r~~S----v~Tf~gh~~~Iy~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~  191 (311)
T KOG0277|consen  117 RRIFLTSSWDGTIKLWDPNRPNS----VQTFNGHNSCIYQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNS  191 (311)
T ss_pred             ceeEEeeccCCceEeecCCCCcc----eEeecCCccEEEEEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccc
Confidence            77888889999999999988777    888999999999999999876 8999999999999999986544445999999


Q ss_pred             CEEEEEEcC-CCCEEEEEecCCeEEEEEccCCc-eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-ee
Q 002564          183 SISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RL  259 (907)
Q Consensus       183 ~I~~l~~sp-~~~~la~g~~dg~I~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~  259 (907)
                      .|.|+.|+. +.++|++|+.|+.|++||+++-+ ++..+.. |.-.|..++|||....+|++++.|-+++|||...+ ..
T Consensus       192 Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g-h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~  270 (311)
T KOG0277|consen  192 EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG-HGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA  270 (311)
T ss_pred             eeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC-CceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence            999999998 45689999999999999999765 4566644 47899999999998889999999999999999855 55


Q ss_pred             eeeeecccccCeEEEEEec-CCCEEEEEcCCCcEEEEE
Q 002564          260 QSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWI  296 (907)
Q Consensus       260 ~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~i~vw~  296 (907)
                      +.+.. .|+.-|..+.|++ ++.++++++.|..++||+
T Consensus       271 ~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  271 IETVD-HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             hhhhh-ccceEEeccccccccCceeeecccccceeeec
Confidence            55565 8999999999998 456999999999999996

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=2.8e-25  Score=222.14  Aligned_cols=281  Identities=16%  Similarity=0.253  Sum_probs=237.4

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCC---ceEEEEeec-CCCCEEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 002564          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD---EELVTFTHS-MRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (907)
Q Consensus       179 ~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~---~~~~~~~~~-~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~  254 (907)
                      .|+.-|.++++|...+++.+|+. |.|+|||+...   ..+..+..- ....|.++...|||+ -|++|+.-.++.|||+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccceeeeeec
Confidence            46778888899999999999986 88999999743   233333322 246899999999999 7888988999999999


Q ss_pred             CCceee--eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEE
Q 002564          255 EKRRLQ--SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (907)
Q Consensus       255 ~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~  332 (907)
                      ......  ..+. ...-...+++.+||.+..+++..||.|.|||+...    .+++.+.||.+.+.||..++||..|.+|
T Consensus       495 AapTprikaelt-ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtklWTG  569 (705)
T KOG0639|consen  495 AAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKLWTG  569 (705)
T ss_pred             cCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecCCCceeecC
Confidence            876443  3333 33346788999999999999999999999999866    6789999999999999999999999999


Q ss_pred             eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeecee
Q 002564          333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL  412 (907)
Q Consensus       333 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~  412 (907)
                      +.|.+||.||++++.+..+..                                                           
T Consensus       570 GlDntvRcWDlregrqlqqhd-----------------------------------------------------------  590 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGRQLQQHD-----------------------------------------------------------  590 (705)
T ss_pred             CCccceeehhhhhhhhhhhhh-----------------------------------------------------------
Confidence            999999999998776554321                                                           


Q ss_pred             cceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE
Q 002564          413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA  492 (907)
Q Consensus       413 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  492 (907)
                                ..+.|.++..+|.+.++++|-.++.+.+...........         .-|.+.|.++.|.+.|+++++.
T Consensus       591 ----------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql---------hlheScVLSlKFa~cGkwfvSt  651 (705)
T KOG0639|consen  591 ----------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL---------HLHESCVLSLKFAYCGKWFVST  651 (705)
T ss_pred             ----------hhhhheecccCCCccceeeecccCcEEEEecCCccceee---------cccccEEEEEEecccCceeeec
Confidence                      126788899999999999999999999988765544332         3699999999999999999999


Q ss_pred             ecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEc
Q 002564          493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV  544 (907)
Q Consensus       493 ~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~  544 (907)
                      |.|..+..|...-|..+...+..++|.++.+|.|++++++|+.|....||.+
T Consensus       652 GkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  652 GKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             CchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9999999999999988888888899999999999999999999998888865

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.1e-24  Score=204.22  Aligned_cols=300  Identities=14%  Similarity=0.218  Sum_probs=219.7

Q ss_pred             EEEEcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcE
Q 002564           86 VATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL  163 (907)
Q Consensus        86 ~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i  163 (907)
                      +..++||...|++++|  ||++|++++.|++|++|++.+.+......-......+-...+.|.||.. ..++..-...++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~-s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK-SVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc-eEEEEEccCCEE
Confidence            3348999999999998  7999999999999999999875542111112223334456788999984 344445556689


Q ss_pred             EEEecCC---CeEEE---------EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEE
Q 002564          164 QLWNIST---KKKLY---------EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (907)
Q Consensus       164 ~iwd~~~---~~~~~---------~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (907)
                      ++|-...   |...+         .-+.|...|..+-....+.+|++++.|..|.+|+++ |+.+..+... ...-+..+
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-q~~n~~aa  235 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-QSSNYDAA  235 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-ccccccee
Confidence            9997632   22211         123467778888888889999999999999999999 9988888765 56678899


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECC---Cc-----eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564          232 FSSDGQPLLASGASSGVISIWNLE---KR-----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (907)
Q Consensus       232 fs~dg~~~l~sg~~dg~I~iwd~~---~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (907)
                      .||+|+ ++++++..-.|++|.+-   .|     ..+..+. +|...|..++|+++...+++.+.||++++||.+..-. 
T Consensus       236 vSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~-  312 (420)
T KOG2096|consen  236 VSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE-  312 (420)
T ss_pred             eCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe-
Confidence            999999 88888888899999863   22     3445566 9999999999999999999999999999998764310 


Q ss_pred             cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecc
Q 002564          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  383 (907)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  383 (907)
                             .+.           |.+.|=.++    +-+-                                          
T Consensus       313 -------~~q-----------Dpk~Lk~g~----~pl~------------------------------------------  328 (420)
T KOG2096|consen  313 -------AGQ-----------DPKILKEGS----APLH------------------------------------------  328 (420)
T ss_pred             -------cCC-----------CchHhhcCC----cchh------------------------------------------
Confidence                   000           111110100    0000                                          


Q ss_pred             cccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeee
Q 002564          384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  463 (907)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~  463 (907)
                                                            ...+....++++|.|+.+++. ....+++|....|+....+.
T Consensus       329 --------------------------------------aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e  369 (420)
T KOG2096|consen  329 --------------------------------------AAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELE  369 (420)
T ss_pred             --------------------------------------hcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHH
Confidence                                                  000223367888888887775 34578899988888877776


Q ss_pred             ccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (907)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  502 (907)
                             ..|...|.+++|+++|++++++| |..+++..
T Consensus       370 -------~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  370 -------DIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             -------HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence                   58999999999999999999998 46777765

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=1.9e-23  Score=229.31  Aligned_cols=228  Identities=15%  Similarity=0.164  Sum_probs=180.9

Q ss_pred             EecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe--------EEEEEcCC
Q 002564          109 IDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--------KLYEFKGW  180 (907)
Q Consensus       109 ~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~--------~~~~~~~h  180 (907)
                      |+.++.|++|+......    +..+..|...+..+.|+|... ++|++|+.||+|++||+.++.        ++..+.+|
T Consensus        50 GG~~gvI~L~~~~r~~~----v~~L~gH~~~V~~lafsP~~~-~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPP----VIKLKGHTSSILDLQFNPCFS-EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             CCceeEEEeeecCCCce----EEEEcCCCCCEEEEEEcCCCC-CEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence            55678899999876543    777888888999999999732 789999999999999997642        34578899


Q ss_pred             CCCEEEEEEcCCCCE-EEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564          181 GSSISSCVSSPALDV-VAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~-la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~  259 (907)
                      ...|.+++|+|++.. +++|+.||.|+|||+++++.+..+..  ...|.+++|+|+|. +|++++.|+.|+|||+++++.
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~  201 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEI  201 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcE
Confidence            999999999999875 57899999999999999988777753  47899999999999 889999999999999999999


Q ss_pred             eeeeecccccCeEEE-----EEecCCCEEEEEcCCC----cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEE
Q 002564          260 QSVIREAHDNAIISL-----HFFANEPVLMSASADN----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL  330 (907)
Q Consensus       260 ~~~~~~~h~~~V~~l-----~~~~~~~~l~s~~~d~----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~  330 (907)
                      +..+. +|.+.+.+.     .|++++.++++++.|+    .|++||++.... +........+.+.+......++|.+++
T Consensus       202 i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~~ld~~~~~L~p~~D~~tg~l~l  279 (568)
T PTZ00420        202 ASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTMSIDNASAPLIPHYDESTGLIYL  279 (568)
T ss_pred             EEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEEEecCCccceEEeeeCCCCCEEE
Confidence            98887 898765433     3457888999988774    799999875432 222223333334333333444688999


Q ss_pred             EEeCCCCEEEEEceec
Q 002564          331 SAGQDRAFRLFSVIQD  346 (907)
Q Consensus       331 s~~~dg~i~iwd~~~~  346 (907)
                      +|+.|+.|++|++..+
T Consensus       280 sGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        280 IGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEECCCeEEEEEccCC
Confidence            9999999999998654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=5e-23  Score=219.01  Aligned_cols=284  Identities=13%  Similarity=0.155  Sum_probs=217.7

Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEE-EEEcCCCcEEEEEccCCCCCcceeEeccCCCCCC
Q 002564          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (907)
Q Consensus       239 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v  317 (907)
                      ++++++.|+.|.+||+.+++.+..+. .+. .+.+++|+|++..+ ++++.++.|++|+....    .....+..+. .+
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~-~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~-~~   75 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFP-VGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG----EVIGTLPSGP-DP   75 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEE-CCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC----cEEEeccCCC-Cc
Confidence            78899999999999999999888887 443 46789999999876 56778899999987654    2333333333 35


Q ss_pred             eEEEEecCCCEEEEE-eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEe
Q 002564          318 LCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH  396 (907)
Q Consensus       318 ~~i~~~~~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  396 (907)
                      ..++|+|+++.++++ +.++.+++||+.+.+....+.                                           
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-------------------------------------------  112 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-------------------------------------------  112 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-------------------------------------------
Confidence            678999999877654 568999999986543322211                                           


Q ss_pred             eCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCccceeeeccccccccCcCC
Q 002564          397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNG  475 (907)
Q Consensus       397 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  475 (907)
                                                ....+.+++++|+|++++++..++ .+..|+..++.......         ...
T Consensus       113 --------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~---------~~~  157 (300)
T TIGR03866       113 --------------------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL---------VDQ  157 (300)
T ss_pred             --------------------------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE---------cCC
Confidence                                      013356799999999999988875 56778988776654432         223


Q ss_pred             cEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCceeeeeecC--------cceeEEEEeeCCCEEEEE-eCCCeEEEEEcc
Q 002564          476 EVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATV-ADDLVIRLFDVV  545 (907)
Q Consensus       476 ~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~-~~dg~I~v~d~~  545 (907)
                      .+.+++|+|++++++.+ ..++.|++||+.+++....+...        .....++|+|++++++++ ..++.+.+||..
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence            45779999999988554 46899999999998877665432        123468899999986554 456789999999


Q ss_pred             cceeEEEeecCCCCeeeEEECCCCcEEEEE-eCCCcEEEEEcCCCceeeEeeeCCceEEEEECC
Q 002564          546 ALRMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIHVDVSITALSLSP  608 (907)
Q Consensus       546 ~~~~~~~~~~h~~~I~~l~fspdg~~l~s~-s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~sp  608 (907)
                      +++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+++++..++....+++++++|
T Consensus       238 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       238 TYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             CCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence            988876654 44579999999999999876 468999999999999999999888889999876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=7.3e-23  Score=217.76  Aligned_cols=294  Identities=11%  Similarity=0.119  Sum_probs=220.6

Q ss_pred             CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEEccCCceEEEEeecCCCCEEEE
Q 002564          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~l-a~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l  230 (907)
                      +.+++++.|+.|.+||..+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++.+..+..+  ..+..+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~   78 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG--PDPELF   78 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--CCccEE
Confidence            468889999999999999999999998754 46789999999876 56677899999999998887766544  346788


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCC-cEEEEEccCCCCCcceeEe
Q 002564          231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-SIKMWIFDTTDGDPRLLRF  309 (907)
Q Consensus       231 ~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-~i~vw~~~~~~~~~~~~~~  309 (907)
                      +|+|+++.++++++.++.|++||+.+++.+..+.  +...+.+++|+|++.++++++.++ .+..|+....    .....
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~----~~~~~  152 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY----EIVDN  152 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC----eEEEE
Confidence            9999998444555678999999999988877775  334578899999999999888765 4566776543    22222


Q ss_pred             ccCCCCCCeEEEEecCCCEEEEE-eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccccc
Q 002564          310 RSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  388 (907)
Q Consensus       310 ~~~h~~~v~~i~~~~~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  388 (907)
                      . .....+.++.|+|++++++.+ ..++.+++||+.+++....+...                                 
T Consensus       153 ~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~---------------------------------  198 (300)
T TIGR03866       153 V-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE---------------------------------  198 (300)
T ss_pred             E-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec---------------------------------
Confidence            2 123356789999999988654 46899999999776543332110                                 


Q ss_pred             ccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccceeeecccc
Q 002564          389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSE  467 (907)
Q Consensus       389 ~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~  467 (907)
                                          ..        ...........++++|+|++++++ ..++.+.+||+.+++.....     
T Consensus       199 --------------------~~--------~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-----  245 (300)
T TIGR03866       199 --------------------IP--------GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-----  245 (300)
T ss_pred             --------------------cc--------ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----
Confidence                                00        000001234468899999986654 45678999999988776544     


Q ss_pred             ccccCcCCcEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCceeeeeecCcceeEEEEee
Q 002564          468 RSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR  525 (907)
Q Consensus       468 ~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~  525 (907)
                          .+...+.+++|+|++++|+++ +.+|.|++||+.+++.+..++.+.....++++|
T Consensus       246 ----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       246 ----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             ----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence                234578899999999999876 468999999999999999998888788888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.2e-23  Score=199.42  Aligned_cols=277  Identities=16%  Similarity=0.230  Sum_probs=215.2

Q ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564          180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (907)
Q Consensus       180 h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~  259 (907)
                      ....|+.+.|+|.++.|++++.||.+++|+.........+..  ..++.+++|.++.+  +++|+.||.|+.+|+.++..
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~--~~plL~c~F~d~~~--~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH--GAPLLDCAFADEST--IVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec--CCceeeeeccCCce--EEEeccCceEEEEEecCCcc
Confidence            367899999999999999999999999999998876666665  58999999998765  88999999999999999877


Q ss_pred             eeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEE
Q 002564          260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  339 (907)
Q Consensus       260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~  339 (907)
                      ...-  .|..+|.++.+++....+++||.|++|++||.....    ..... .....|.++..  .|..|+.|+.|..+.
T Consensus        88 ~~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~----~~~~~-d~~kkVy~~~v--~g~~LvVg~~~r~v~  158 (323)
T KOG1036|consen   88 DQIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV----VVGTF-DQGKKVYCMDV--SGNRLVVGTSDRKVL  158 (323)
T ss_pred             eeec--cCCCceEEEEeeccCCeEEEcccCccEEEEeccccc----ccccc-ccCceEEEEec--cCCEEEEeecCceEE
Confidence            6554  599999999999988899999999999999876421    12111 22336666665  467899999999999


Q ss_pred             EEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeec
Q 002564          340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  419 (907)
Q Consensus       340 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~  419 (907)
                      +||+++........                                                                  
T Consensus       159 iyDLRn~~~~~q~r------------------------------------------------------------------  172 (323)
T KOG1036|consen  159 IYDLRNLDEPFQRR------------------------------------------------------------------  172 (323)
T ss_pred             EEEcccccchhhhc------------------------------------------------------------------
Confidence            99998654332110                                                                  


Q ss_pred             CCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ccceeeeccccc-cccCcCCcEEEEEEcCCCCEEEEEec
Q 002564          420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG----ISRGSYLDMSER-SNYAHNGEVVGVACDSTNTLMISAGY  494 (907)
Q Consensus       420 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~----~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~  494 (907)
                      ...-...++|+++-|++.=.++++-+|+|.+=.+...    .....|.-.... ....--.+|++|+|+|-...++|||.
T Consensus       173 eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs  252 (323)
T KOG1036|consen  173 ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS  252 (323)
T ss_pred             cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCC
Confidence            0011267899999999999999999999887555443    222223210000 00011247999999999999999999


Q ss_pred             CCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeC
Q 002564          495 HGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD  535 (907)
Q Consensus       495 dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~  535 (907)
                      ||.|.+||..+.+.+..+..- ..|..++|+.+|..||+++.
T Consensus       253 DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  253 DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999999999998887777544 77999999999999999975

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=9.1e-24  Score=216.21  Aligned_cols=319  Identities=14%  Similarity=0.227  Sum_probs=242.3

Q ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEE
Q 002564          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (907)
Q Consensus       173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iw  252 (907)
                      +-..+.+|.+.|.|+...|.|.+||+|+.||+|+||.+.+|.++.++...  +.|.|++|+|.+..-+++......+.|-
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEEEecCceEEe
Confidence            34567899999999999999999999999999999999999999999875  7899999999876434444444457777


Q ss_pred             ECCCceeeeeeecccccCeEEEEEecCCCEEEEE----cCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCE
Q 002564          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA----SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (907)
Q Consensus       253 d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~----~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~  328 (907)
                      +..-|..+....              ....|+++    ..++.+..|.-...+....-++..-.|...|..+.|+..|.|
T Consensus       470 np~~G~~~e~~~--------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY  535 (733)
T KOG0650|consen  470 NPIFGDRLEVGP--------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY  535 (733)
T ss_pred             Cccccchhhhcc--------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce
Confidence            655442221111              01112221    235678888544322222224445578999999999999999


Q ss_pred             EEEEeCC---CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEE
Q 002564          329 ILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (907)
Q Consensus       329 l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w  405 (907)
                      |++...+   ..|.|.++......                                                        
T Consensus       536 latV~~~~~~~~VliHQLSK~~sQ--------------------------------------------------------  559 (733)
T KOG0650|consen  536 LATVMPDSGNKSVLIHQLSKRKSQ--------------------------------------------------------  559 (733)
T ss_pred             EEEeccCCCcceEEEEeccccccc--------------------------------------------------------
Confidence            9987654   34556555432211                                                        


Q ss_pred             EeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC
Q 002564          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (907)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  485 (907)
                                  .+.....+.+.++.|+|...++++++.. .|++||+..+..+..+.        .....|..++++|.
T Consensus       560 ------------~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~--------tg~kwiS~msihp~  618 (733)
T KOG0650|consen  560 ------------SPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLL--------TGSKWISSMSIHPN  618 (733)
T ss_pred             ------------CchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHh--------cCCeeeeeeeecCC
Confidence                        1111234789999999999999998764 69999999988777764        55678999999999


Q ss_pred             CCEEEEEecCCeEEEEECCCC-ceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEc------ccc---eeEEEee
Q 002564          486 NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDV------VAL---RMVRKFE  554 (907)
Q Consensus       486 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~------~~~---~~~~~~~  554 (907)
                      |.-|+.++.|+.+..+|+.-. ++.+++.++ ..+++++||+.-.++|+|++||++.||--      ...   -++..+.
T Consensus       619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~  698 (733)
T KOG0650|consen  619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR  698 (733)
T ss_pred             CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence            999999999999999999844 556666555 78999999999999999999999999842      222   3467888


Q ss_pred             cCCCC----eeeEEECCCCcEEEEEeCCCcEEEE
Q 002564          555 GHTDR----ITDFCFSEDGKWLLSSGMDGSLRIW  584 (907)
Q Consensus       555 ~h~~~----I~~l~fspdg~~l~s~s~Dg~I~vw  584 (907)
                      ||...    |.++.|+|.-.||++++.||+|++|
T Consensus       699 gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  699 GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CceeecccceEeecccCCCceEEecCCCceEEee
Confidence            99766    8999999999999999999999998

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.5e-20  Score=202.94  Aligned_cols=245  Identities=16%  Similarity=0.247  Sum_probs=199.0

Q ss_pred             cccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEe
Q 002564           90 SRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWN  167 (907)
Q Consensus        90 ~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd  167 (907)
                      .+|+..-+.|++  +|.+|++|+.||.|++|+..+.+..   ...+..+...+..+  .-..  +++++|+.+++|.+|.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~---P~ti~~~g~~v~~i--a~~s--~~f~~~s~~~tv~~y~   82 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE---PETIDISGELVSSI--ACYS--NHFLTGSEQNTVLRYK   82 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC---CchhhccCceeEEE--eecc--cceEEeeccceEEEee
Confidence            468888888886  6999999999999999998776321   23333233333333  3333  6799999999999999


Q ss_pred             cCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCC
Q 002564          168 ISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (907)
Q Consensus       168 ~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg  247 (907)
                      +.+++.-..+....-++++++++-+|+++|.|+.|-.|++.++.+......+..+ .++|.++.|+|.+. +||+.+-||
T Consensus        83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~-fLAvss~dG  160 (933)
T KOG1274|consen   83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGN-FLAVSSCDG  160 (933)
T ss_pred             CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeeeEcCCCC-EEEEEecCc
Confidence            9988776666666789999999999999999999999999999999888888876 89999999999999 999999999


Q ss_pred             cEEEEECCCceeeeeeec------c-cccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEE
Q 002564          248 VISIWNLEKRRLQSVIRE------A-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (907)
Q Consensus       248 ~I~iwd~~~~~~~~~~~~------~-h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (907)
                      .|++||+.++.+..++..      . ....+..++|+|++..++..+.|+.|++|+........  .-....+...+..+
T Consensus       161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f--~Lr~~~~ss~~~~~  238 (933)
T KOG1274|consen  161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF--KLRDKLSSSKFSDL  238 (933)
T ss_pred             eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe--eecccccccceEEE
Confidence            999999999988777651      1 14567789999998889999999999999765543222  22223344559999


Q ss_pred             EEecCCCEEEEEeCCCCEEEEEcee
Q 002564          321 RFYANGRHILSAGQDRAFRLFSVIQ  345 (907)
Q Consensus       321 ~~~~~g~~l~s~~~dg~i~iwd~~~  345 (907)
                      +|+|+|+||++++.||.|.+||+.+
T Consensus       239 ~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  239 QWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEcCCCcEEeeeccCCcEEEEeccc
Confidence            9999999999999999999999986

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=2.7e-23  Score=194.63  Aligned_cols=300  Identities=16%  Similarity=0.257  Sum_probs=230.0

Q ss_pred             cCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEccCCc----------eEEEEe----ecCCCCEEEEEEecCCCCEEEE
Q 002564          178 KGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE----------ELVTFT----HSMRGAVTALAFSSDGQPLLAS  242 (907)
Q Consensus       178 ~~h~~~I~~l~~sp-~~~~la~g~~dg~I~iwd~~~~~----------~~~~~~----~~~~~~v~~l~fs~dg~~~l~s  242 (907)
                      ..|.+.|+++...+ .|+++++|+.||.|.+||+++..          .+..+.    ..|+-.|.++.|-|-..-++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46889999999988 58899999999999999998543          111111    2345689999999976668999


Q ss_pred             EeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCC---CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeE
Q 002564          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC  319 (907)
Q Consensus       243 g~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~  319 (907)
                      ++.|.+++|||..+.+....+.  -.+.|++-+++|=.   .++++|..|-.|++.|+..+    .+...+.||.+.|.+
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----s~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----SFSHTLSGHRDGVLA  193 (397)
T ss_pred             ccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----cceeeeccccCceEE
Confidence            9999999999999998888876  67788888888843   37788888999999998776    467788899999999


Q ss_pred             EEEecCCCE-EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeC
Q 002564          320 IRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD  398 (907)
Q Consensus       320 i~~~~~g~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  398 (907)
                      +.|+|...+ |++|+.||.+++||++..                                                    
T Consensus       194 V~Wsp~~e~vLatgsaDg~irlWDiRra----------------------------------------------------  221 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGAIRLWDIRRA----------------------------------------------------  221 (397)
T ss_pred             EEeccCceeEEEecCCCceEEEEEeecc----------------------------------------------------
Confidence            999996654 668999999999998642                                                    


Q ss_pred             CceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEE
Q 002564          399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (907)
Q Consensus       399 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (907)
                                                                    .|..++.|...++......     ...+|.+.|.
T Consensus       222 ----------------------------------------------sgcf~~lD~hn~k~~p~~~-----~n~ah~gkvn  250 (397)
T KOG4283|consen  222 ----------------------------------------------SGCFRVLDQHNTKRPPILK-----TNTAHYGKVN  250 (397)
T ss_pred             ----------------------------------------------cceeEEeecccCccCcccc-----ccccccceee
Confidence                                                          1122222322221111111     1148999999


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeec---CcceeEEEE---eeCCCEEEEEeCCCeEEEEEcccceeEEE
Q 002564          479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVY---HRVNGLLATVADDLVIRLFDVVALRMVRK  552 (907)
Q Consensus       479 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~---s~~~~~la~~~~dg~I~v~d~~~~~~~~~  552 (907)
                      +++|+.++.++++++.|..+++|+..+|+....-..   +..-...++   +.+...++.--.++.+.++++-.+..++.
T Consensus       251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~  330 (397)
T KOG4283|consen  251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRR  330 (397)
T ss_pred             eeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEe
Confidence            999999999999999999999999988753221111   011111111   33444555555668999999999999999


Q ss_pred             eecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEc
Q 002564          553 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       553 ~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~  586 (907)
                      +.+|-..|.+.++-|+=+...+++.|+.|..|-.
T Consensus       331 l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  331 LSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             eecccceeeEEeecCchhhhhccccCCccccccc
Confidence            9999999999999999999999999999999975

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.8e-24  Score=194.16  Aligned_cols=235  Identities=20%  Similarity=0.275  Sum_probs=191.3

Q ss_pred             CEEEEEecCCcEEEEecCCC---eEEEEEcCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEEccCCce--EEEEeecCC
Q 002564          152 NKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSMR  224 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~---~~~~~~~~h~~~I~~l~~sp--~~~~la~g~~dg~I~iwd~~~~~~--~~~~~~~~~  224 (907)
                      ++|++++.|++|+|+.++++   +++.++.||.++|..++|..  -|.+||+++.||.|.||.-.+++-  ...+.. |.
T Consensus        24 krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~-h~  102 (299)
T KOG1332|consen   24 KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA-HS  102 (299)
T ss_pred             ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh-hc
Confidence            89999999999999998754   57889999999999999976  799999999999999999887752  233333 47


Q ss_pred             CCEEEEEEecCCC-CEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeEEEEEecC---C-----------CEEEEEc
Q 002564          225 GAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFAN---E-----------PVLMSAS  287 (907)
Q Consensus       225 ~~v~~l~fs~dg~-~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~---~-----------~~l~s~~  287 (907)
                      ..|++++|.|.+- .+|++++.||.|.|.+.++.  -....+..+|.-.|++++|.|.   |           +.|++|+
T Consensus       103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG  182 (299)
T KOG1332|consen  103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG  182 (299)
T ss_pred             ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence            8999999999742 47899999999999988654  3444455589999999999985   4           4699999


Q ss_pred             CCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecC----CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564          288 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (907)
Q Consensus       288 ~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  363 (907)
                      .|+.|+||+++..  .+...+.+.+|.+.|..++|.|.    ..++++|++||++.+|.........+            
T Consensus       183 cDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk------------  248 (299)
T KOG1332|consen  183 CDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK------------  248 (299)
T ss_pred             CccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc------------
Confidence            9999999998765  55666778999999999999994    35899999999999998653221111            


Q ss_pred             ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (907)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (907)
                                                                        ...+   ...+..+..+.||..|+.|++++
T Consensus       249 --------------------------------------------------~tll---~~f~~~~w~vSWS~sGn~LaVs~  275 (299)
T KOG1332|consen  249 --------------------------------------------------KTLL---EEFPDVVWRVSWSLSGNILAVSG  275 (299)
T ss_pred             --------------------------------------------------cccc---ccCCcceEEEEEeccccEEEEec
Confidence                                                              0111   12347799999999999999999


Q ss_pred             CCCcEEEEeCC
Q 002564          444 AGGWIERFNLQ  454 (907)
Q Consensus       444 ~dg~i~i~d~~  454 (907)
                      .|+.|.+|.-.
T Consensus       276 GdNkvtlwke~  286 (299)
T KOG1332|consen  276 GDNKVTLWKEN  286 (299)
T ss_pred             CCcEEEEEEeC
Confidence            99999999754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.1e-21  Score=211.33  Aligned_cols=494  Identities=17%  Similarity=0.217  Sum_probs=316.6

Q ss_pred             EEecCeEE--EEEcCeEEEEeC--CeeEEEEcccccceEEEEee-----CCEEEEEecCCcEEEEecCCCCccccceeeE
Q 002564           63 ASYRDYTF--AAYGNHIAVVKR--AHQVATWSRHSAKVNLLLLF-----GEHILSIDIDGNMFIWAFKGIEENLAPVGHV  133 (907)
Q Consensus        63 a~~~~~~~--~a~g~~I~vw~~--~~~~~~~~~h~~~V~~l~~~-----g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~  133 (907)
                      .|++|.++  +.+++.|.||..  +.++..+.+|..+++.+..+     -.++++++.||.|++||...+.+    ++++
T Consensus        23 vfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L----lkt~   98 (792)
T KOG1963|consen   23 VFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL----LKTF   98 (792)
T ss_pred             ccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE----EEEE
Confidence            47888555  466888999974  55566799999999999863     26788999999999999999988    5555


Q ss_pred             ecCCCcccEEEEcCCCCC-CEEE-EEecCC------------cEEEEecCC--CeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 002564          134 KLDDKFTPTCIMHPDTYL-NKVI-VGSQEG------------SLQLWNIST--KKKLYEFKGWGSSISSCVSSPALDVVA  197 (907)
Q Consensus       134 ~~~~~~~~~~~~~p~~~~-~~l~-~~s~dg------------~i~iwd~~~--~~~~~~~~~h~~~I~~l~~sp~~~~la  197 (907)
                      ..+.... ...+.|.-.. ...+ .+..+.            +++-+.+.+  ......++.|.. -.++.+++.|.+.+
T Consensus        99 ~~~~~v~-~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~  176 (792)
T KOG1963|consen   99 DNNLPVH-ALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKG  176 (792)
T ss_pred             ecCCcee-EEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEE
Confidence            4432221 1111111000 0111 111111            111111111  111111223322 46788888888776


Q ss_pred             EEecCCeEEEEEccCCceE---EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC---ceeeeeeecccccCe
Q 002564          198 VGCSDGKIHVHNVRYDEEL---VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAI  271 (907)
Q Consensus       198 ~g~~dg~I~iwd~~~~~~~---~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~---~~~~~~~~~~h~~~V  271 (907)
                      .... ..+.+|+..++...   +....+|...+++.+++|.++ ++|+|..||.|.+|.--.   .....++-.-|...|
T Consensus       177 i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V  254 (792)
T KOG1963|consen  177 IVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV  254 (792)
T ss_pred             EEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence            6654 56899998875511   112234566789999999999 999999999999996332   233333333688899


Q ss_pred             EEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceeccccee
Q 002564          272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE  351 (907)
Q Consensus       272 ~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~  351 (907)
                      .+++|+++|.+|++||..+.+.+|.+.++.  .+.+   ..-.++|..+.++||+.+.+....|+.|.+....+......
T Consensus       255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL---PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t  329 (792)
T KOG1963|consen  255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL---PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST  329 (792)
T ss_pred             ceeEEecCCceEeecccceEEEEEeecCCC--cccc---cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence            999999999999999999999999887664  2333   34568999999999999999999999999988755444333


Q ss_pred             echhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEE
Q 002564          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (907)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  431 (907)
                      ++.......                                                         ........-.+.++
T Consensus       330 Isgi~~~~~---------------------------------------------------------~~k~~~~~l~t~~~  352 (792)
T KOG1963|consen  330 ISGIKPPTP---------------------------------------------------------STKTRPQSLTTGVS  352 (792)
T ss_pred             ccCccCCCc---------------------------------------------------------cccccccccceeEE
Confidence            322100000                                                         00011225577889


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccc--c-CcCCcEEEEEEcCCCCEEEEEe--------c--CCeE
Q 002564          432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN--Y-AHNGEVVGVACDSTNTLMISAG--------Y--HGDI  498 (907)
Q Consensus       432 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~-~h~~~v~~l~~s~~~~~l~s~~--------~--dg~i  498 (907)
                      ++|.-+.++..+..|+|++||+.+...+..+........  . .+...++.++.+..|.+++|.-        .  .-.+
T Consensus       353 idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~L  432 (792)
T KOG1963|consen  353 IDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSL  432 (792)
T ss_pred             EcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEE
Confidence            999888888899999999999998877765542211110  1 2344578888888899998874        2  2358


Q ss_pred             EEEECCCCce----eeee--ecCcceeEEEEe-eC-CCEEEEEeCCCeEEEEEcccc----------eeEEEeecCCCCe
Q 002564          499 KVWDFKGRDL----KSRW--EVGCSLVKIVYH-RV-NGLLATVADDLVIRLFDVVAL----------RMVRKFEGHTDRI  560 (907)
Q Consensus       499 ~iwd~~~~~~----~~~~--~~~~~i~~~~~s-~~-~~~la~~~~dg~I~v~d~~~~----------~~~~~~~~h~~~I  560 (907)
                      ++|-......    ...+  +++..+...++. +. ....++++.||.++||-+...          .+...-.-|..++
T Consensus       433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i  512 (792)
T KOG1963|consen  433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPI  512 (792)
T ss_pred             EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcc
Confidence            8998765433    2222  233333444443 33 338899999999999988332          2332222378999


Q ss_pred             eeEEECCCCcEEEEEeCCCcEEEEEcCC-CceeeEeeeCC-ceEEEEECC----CCceEEEEEecCCeEEEeeccc
Q 002564          561 TDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDV-SITALSLSP----NMDVLATAHVDQNGVYLWVNRC  630 (907)
Q Consensus       561 ~~l~fspdg~~l~s~s~Dg~I~vwd~~~-~~~~~~~~~~~-~v~~l~~sp----dg~~lat~~~d~~~i~lW~~~~  630 (907)
                      ++++|+.||..|+ ++.|++|.+||..+ ..+........ ++..+.+..    ++. +..++ .+ .+.+|++..
T Consensus       513 ~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~l~~WNll~  584 (792)
T KOG1963|consen  513 TALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGA-LVHAT-QQ-RLSVWNLLS  584 (792)
T ss_pred             cchhhcCCCcEEE-EecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccc-eeecc-Cc-eEehHhhhh
Confidence            9999999997555 56788999999988 44433332211 233333332    222 22222 23 488998743

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.5e-23  Score=205.13  Aligned_cols=289  Identities=17%  Similarity=0.283  Sum_probs=233.0

Q ss_pred             ccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCC
Q 002564           93 SAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST  170 (907)
Q Consensus        93 ~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~  170 (907)
                      .++|+++.|  ....|++++.||+++||.++...-.  .+..+.+....+.++.|+|+|. ..+++++....++.||+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCc-eEEEecccceEEEEeeccc
Confidence            567888886  5778999999999999999875442  3677777788888999999993 3888999999999999998


Q ss_pred             CeEEE--EEcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCC
Q 002564          171 KKKLY--EFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG  247 (907)
Q Consensus       171 ~~~~~--~~~~h-~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg  247 (907)
                      .+...  .+.++ ...+.....||++++||..+..|.|.+....+++.+.++...  +.|..++|+.||+ .|++++.+|
T Consensus       290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie--G~v~~~~fsSdsk-~l~~~~~~G  366 (514)
T KOG2055|consen  290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE--GVVSDFTFSSDSK-ELLASGGTG  366 (514)
T ss_pred             cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec--cEEeeEEEecCCc-EEEEEcCCc
Confidence            87643  33344 346778899999999999999999999999999999999985  8999999999998 666666789


Q ss_pred             cEEEEECCCceeeeeeecccccCe--EEEEEecCCCEEEEEcCCCcEEEEEccCC--CCCcceeEeccCCCCCCeEEEEe
Q 002564          248 VISIWNLEKRRLQSVIREAHDNAI--ISLHFFANEPVLMSASADNSIKMWIFDTT--DGDPRLLRFRSGHSAPPLCIRFY  323 (907)
Q Consensus       248 ~I~iwd~~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~~~d~~i~vw~~~~~--~~~~~~~~~~~~h~~~v~~i~~~  323 (907)
                      .|.+||++...+++.+.  ..+.|  ++++.++++.+||+|+..|.|.|||.+..  ...++.+..+..-...|+++.|+
T Consensus       367 eV~v~nl~~~~~~~rf~--D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn  444 (514)
T KOG2055|consen  367 EVYVWNLRQNSCLHRFV--DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN  444 (514)
T ss_pred             eEEEEecCCcceEEEEe--ecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence            99999999999998887  33444  56777799999999999999999986543  34567777777788899999999


Q ss_pred             cCCCEEEEEeC--CCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCce
Q 002564          324 ANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  401 (907)
Q Consensus       324 ~~g~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  401 (907)
                      +|++.|+.++.  +..+|+-.+.+...-..                                                  
T Consensus       445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsN--------------------------------------------------  474 (514)
T KOG2055|consen  445 HDAQILAIASRVKKNALRLVHVPSCTVFSN--------------------------------------------------  474 (514)
T ss_pred             cchhhhhhhhhccccceEEEeccceeeecc--------------------------------------------------
Confidence            99999987764  56677766543222111                                                  


Q ss_pred             EEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 002564          402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (907)
Q Consensus       402 v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~  454 (907)
                         |-.            ....-+.++|++|||.|.++++|...|.+.+|.+.
T Consensus       475 ---fP~------------~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  475 ---FPT------------SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ---CCC------------CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence               111            11223789999999999999999999999999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.2e-23  Score=192.10  Aligned_cols=253  Identities=15%  Similarity=0.255  Sum_probs=206.3

Q ss_pred             EcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEE
Q 002564           89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (907)
Q Consensus        89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iw  166 (907)
                      -..|...|..+..  .|++|+||+.|++|+|+.+..+.. ..++.++.+|.+.+..+++....|.+.|++++.||.|.||
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            4678888988774  699999999999999999987654 2347889999999999998776666999999999999999


Q ss_pred             ecCCCe--EEEEEcCCCCCEEEEEEcCC--CCEEEEEecCCeEEEEEccCC--ceEEEEeecCCCCEEEEEEecC---CC
Q 002564          167 NISTKK--KLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYD--EELVTFTHSMRGAVTALAFSSD---GQ  237 (907)
Q Consensus       167 d~~~~~--~~~~~~~h~~~I~~l~~sp~--~~~la~g~~dg~I~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~d---g~  237 (907)
                      .-.+|+  ..+....|...|++++|.|.  |-.||+++.||.|.|.+.++.  -....+...|.-.|++++|.|.   |.
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~  165 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS  165 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence            987774  45667889999999999996  568999999999999998765  2334444455778999999986   31


Q ss_pred             ----------CEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeEEEEEecCC----CEEEEEcCCCcEEEEEccCCC
Q 002564          238 ----------PLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANE----PVLMSASADNSIKMWIFDTTD  301 (907)
Q Consensus       238 ----------~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~~~d~~i~vw~~~~~~  301 (907)
                                ..|++|+.|..|+||+..++  +...++. +|...|+.++|.|.-    ..+++++.||++.||..+...
T Consensus       166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~  244 (299)
T KOG1332|consen  166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY  244 (299)
T ss_pred             ccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence                      25999999999999999886  3334466 999999999999964    489999999999999877433


Q ss_pred             CCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (907)
                      +.+ ....+......+..+.|+..|+.|+.++.|+.+.+|.-.
T Consensus       245 e~w-k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  245 EPW-KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             Ccc-cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            322 233344567889999999999999999999999999754

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=4.2e-23  Score=205.97  Aligned_cols=254  Identities=18%  Similarity=0.340  Sum_probs=203.6

Q ss_pred             EcccccceEEEE--e-eCCEEEEEecCCcEEEEecCCCCccc------cceeeEecCCCcccEEEEcCCCCCCEEEEEec
Q 002564           89 WSRHSAKVNLLL--L-FGEHILSIDIDGNMFIWAFKGIEENL------APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ  159 (907)
Q Consensus        89 ~~~h~~~V~~l~--~-~g~~l~s~~~dg~v~vWd~~~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~  159 (907)
                      ...|.+.|..+.  | +...+++.+..+.|.|||.....-..      .|-..+.+|.+....+.|++... ..+++|+.
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~-g~Lls~~~  198 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE-GTLLSGSD  198 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc-eeEeeccC
Confidence            456888888776  3 45677777888999999987654322      22336666766555667777654 68999999


Q ss_pred             CCcEEEEecCCCe-------EEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEEccC--CceEEEEeecCCCCEEE
Q 002564          160 EGSLQLWNISTKK-------KLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRY--DEELVTFTHSMRGAVTA  229 (907)
Q Consensus       160 dg~i~iwd~~~~~-------~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~~--~~~~~~~~~~~~~~v~~  229 (907)
                      |++|++||+....       +...+.+|...|..++|++- .+++++++.|+.+.|||+++  .+....... |.+.|.|
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-h~~~vn~  277 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-HSAEVNC  277 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-cCCceeE
Confidence            9999999996432       35668999999999999995 46888999999999999995  344444444 4899999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCC-------
Q 002564          230 LAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTT-------  300 (907)
Q Consensus       230 l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~-------  300 (907)
                      ++|+|-+.++||+|+.|++|.+||+++- +.+.++. +|...|..+.|+|.. ..|++++.|+.+.+||+..-       
T Consensus       278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             EEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            9999999889999999999999999986 4566666 999999999999965 68999999999999998654       


Q ss_pred             ---CCCcceeEeccCCCCCCeEEEEecCC-CEEEEEeCCCCEEEEEcee
Q 002564          301 ---DGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQ  345 (907)
Q Consensus       301 ---~~~~~~~~~~~~h~~~v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~  345 (907)
                         ++.+.++..-.||...|..+.|+|+. -.+++.+.|+.+.||....
T Consensus       357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence               23456677778999999999999954 5677899999999998753

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.4e-20  Score=203.04  Aligned_cols=450  Identities=16%  Similarity=0.218  Sum_probs=314.0

Q ss_pred             eeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCC-CEEEEEecCCcEEEEecCCCeEEEEEcC
Q 002564          101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL-NKVIVGSQEGSLQLWNISTKKKLYEFKG  179 (907)
Q Consensus       101 ~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~  179 (907)
                      .|+++++.+. +..|.||...++++    +..+..+........+.|.... .++++++.+|.|++||...+.++.++..
T Consensus        26 nD~k~l~~~~-~~~V~VyS~~Tg~~----i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~  100 (792)
T KOG1963|consen   26 NDAKFLFLCT-GNFVKVYSTATGEC----ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN  100 (792)
T ss_pred             cCCcEEEEee-CCEEEEEecchHhh----hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence            3677777776 78899999999999    7778888888888888887753 5788999999999999999999999876


Q ss_pred             CCCCEEEEEEcCC---CCEEE-EEecCCe-EEEEEccCCceEEEEe------------ecCCCCEEEEEEecCCCCEEEE
Q 002564          180 WGSSISSCVSSPA---LDVVA-VGCSDGK-IHVHNVRYDEELVTFT------------HSMRGAVTALAFSSDGQPLLAS  242 (907)
Q Consensus       180 h~~~I~~l~~sp~---~~~la-~g~~dg~-I~iwd~~~~~~~~~~~------------~~~~~~v~~l~fs~dg~~~l~s  242 (907)
                       ..++..+.+.|.   ....+ .+..|.. +.....+..+....+.            ..+. .-.++.+++.|. +...
T Consensus       101 -~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~I~~~~~ge-~~~i  177 (792)
T KOG1963|consen  101 -NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKSIVDNNSGE-FKGI  177 (792)
T ss_pred             -CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCccEEEcCCce-EEEE
Confidence             345555555331   11222 2222211 1111111122211111            1111 146788888887 4433


Q ss_pred             EeCCCcEEEEECCCceee---eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeE
Q 002564          243 GASSGVISIWNLEKRRLQ---SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC  319 (907)
Q Consensus       243 g~~dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~  319 (907)
                       ..+..+.+|+..++...   +.....|.-.+++.+++|++++++++..||.|.+|.=-..+........+.-|...|.+
T Consensus       178 -~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~  256 (792)
T KOG1963|consen  178 -VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS  256 (792)
T ss_pred             -EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence             34668999998875411   11123577779999999999999999999999999633312333344556789999999


Q ss_pred             EEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCC
Q 002564          320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (907)
Q Consensus       320 i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  399 (907)
                      +.|+++|.+|++||..|.+.+|.+.+++. +-++                                              
T Consensus       257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP----------------------------------------------  289 (792)
T KOG1963|consen  257 LSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP----------------------------------------------  289 (792)
T ss_pred             eEEecCCceEeecccceEEEEEeecCCCc-cccc----------------------------------------------
Confidence            99999999999999999999999987762 1111                                              


Q ss_pred             ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccc---cccCcCCc
Q 002564          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER---SNYAHNGE  476 (907)
Q Consensus       400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~h~~~  476 (907)
                                            .-.++|..+.+|||+.+.++...|..|.+..+.+...........+.   ......+-
T Consensus       290 ----------------------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l  347 (792)
T KOG1963|consen  290 ----------------------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL  347 (792)
T ss_pred             ----------------------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence                                  11278999999999999999999999999988766555444322211   11234556


Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeec------------CcceeEEEEeeCCCEEEEEeC--------C
Q 002564          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV------------GCSLVKIVYHRVNGLLATVAD--------D  536 (907)
Q Consensus       477 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------~~~i~~~~~s~~~~~la~~~~--------d  536 (907)
                      .+.++++|.-+.++-.+..|.|.+||+-+.+.+..+..            ...++.++.+..|.+++++-.        |
T Consensus       348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~  427 (792)
T KOG1963|consen  348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD  427 (792)
T ss_pred             ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence            78899999777888899999999999988776655532            145777888888999988642        3


Q ss_pred             --CeEEEEEcccc----eeEEE-eecCCCCeeeEEECC-CCc-EEEEEeCCCcEEEEEcCCCc----------eeeEe-e
Q 002564          537 --LVIRLFDVVAL----RMVRK-FEGHTDRITDFCFSE-DGK-WLLSSGMDGSLRIWDVILAR----------QIDAI-H  596 (907)
Q Consensus       537 --g~I~v~d~~~~----~~~~~-~~~h~~~I~~l~fsp-dg~-~l~s~s~Dg~I~vwd~~~~~----------~~~~~-~  596 (907)
                        -.+++|-....    .+... ...|...+...+|.+ ... ..++++.||.++||-+.+.+          |...- .
T Consensus       428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy  507 (792)
T KOG1963|consen  428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY  507 (792)
T ss_pred             ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence              25778866543    23222 246877777666654 333 78999999999999884321          22111 1


Q ss_pred             eCCceEEEEECCCCceEEEEEecCCeEEEeeccc
Q 002564          597 VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (907)
Q Consensus       597 ~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~  630 (907)
                      +..++++++||.||..|+.+..|  .|.+||...
T Consensus       508 ~k~~i~a~~fs~dGslla~s~~~--~Itiwd~~~  539 (792)
T KOG1963|consen  508 HKTPITALCFSQDGSLLAVSFDD--TITIWDYDT  539 (792)
T ss_pred             ccCcccchhhcCCCcEEEEecCC--EEEEecCCC
Confidence            35579999999999877777655  599999765

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=192.26  Aligned_cols=282  Identities=15%  Similarity=0.265  Sum_probs=217.8

Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 002564          184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI  263 (907)
Q Consensus       184 I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~  263 (907)
                      ..|+.|++.|.+||+|+.||.|.|||+.|...-..+..| ..+|++++||+||+ .|++++.|..|.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH-~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH-VRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc-ccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEE
Confidence            789999999999999999999999999998876666665 78999999999999 8999999999999999999999999


Q ss_pred             ecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEE
Q 002564          264 REAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (907)
Q Consensus       264 ~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd  342 (907)
                      +  ..++|+.+.|+|.....+.++ .+..-                         .-+.|++.-..++.-..||.+.   
T Consensus       104 r--f~spv~~~q~hp~k~n~~va~~~~~sp-------------------------~vi~~s~~~h~~Lp~d~d~dln---  153 (405)
T KOG1273|consen  104 R--FDSPVWGAQWHPRKRNKCVATIMEESP-------------------------VVIDFSDPKHSVLPKDDDGDLN---  153 (405)
T ss_pred             E--ccCccceeeeccccCCeEEEEEecCCc-------------------------EEEEecCCceeeccCCCccccc---
Confidence            7  789999999999664333322 11111                         2223332112222223333211   


Q ss_pred             ceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCC
Q 002564          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (907)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~  422 (907)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (405)
T KOG1273|consen  154 --------------------------------------------------------------------------------  153 (405)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (907)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  502 (907)
                        ....+..+.+.|+++++|+..|.+.+|+..+.+.+..+.       ......|..+.++..|++++.-+.|..||.|+
T Consensus       154 --~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~r-------its~~~IK~I~~s~~g~~liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  154 --SSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFR-------ITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE  224 (405)
T ss_pred             --cccccccccCCCCEEEEecCcceEEEEecchheeeeeee-------echheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence              112233677889999999999999999999998888775       12347899999999999999999999999999


Q ss_pred             CCCC-------cee--eeee---cCcceeEEEEeeCCCEEEEEeC-CCeEEEEEcccceeEEEeecCC-CCeeeEEECCC
Q 002564          503 FKGR-------DLK--SRWE---VGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFEGHT-DRITDFCFSED  568 (907)
Q Consensus       503 ~~~~-------~~~--~~~~---~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~~~~~~~~~~~h~-~~I~~l~fspd  568 (907)
                      ++.-       ++.  +.++   ....=.+++|+.+|.+++.++. -..++||....|.+++.+.|.. ....++.|+|-
T Consensus       225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~  304 (405)
T KOG1273|consen  225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV  304 (405)
T ss_pred             hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence            7621       111  1111   1134467899999999988875 4589999999999999999988 55778999999


Q ss_pred             CcEEEEEeCCCcEEEEEcC
Q 002564          569 GKWLLSSGMDGSLRIWDVI  587 (907)
Q Consensus       569 g~~l~s~s~Dg~I~vwd~~  587 (907)
                      ...+++- ..|.|+||...
T Consensus       305 rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  305 RPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             eeeeeec-cCCceEEEEee
Confidence            8888877 67899999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=3.7e-21  Score=199.02  Aligned_cols=275  Identities=13%  Similarity=0.211  Sum_probs=208.4

Q ss_pred             cccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEE
Q 002564          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT  218 (907)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~  218 (907)
                      .+...+|.|||  ..++.+. +..+.+||.+.|..++++++|...|.|++|+.||+.+|+|+.|..|.+|+.+-   -..
T Consensus        14 ci~d~afkPDG--sqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~   87 (1081)
T KOG1538|consen   14 CINDIAFKPDG--TQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGI   87 (1081)
T ss_pred             chheeEECCCC--ceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cce
Confidence            56678899999  6677764 45699999999999999999999999999999999999999999999998653   233


Q ss_pred             EeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564          219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (907)
Q Consensus       219 ~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (907)
                      +.-.|...|.|+.|+|-.. .|++++- ...-+|..+.....+.   .....+.+++|..||++++.|-.||+|.+-+-.
T Consensus        88 LkYSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~V~K~---kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~  162 (1081)
T KOG1538|consen   88 LKYSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKSVSKH---KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN  162 (1081)
T ss_pred             eeeccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhhHHhh---hhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence            4445678999999999887 7888874 4577898765543322   245678999999999999999999999987422


Q ss_pred             CCCCCcceeEeccCCCCCCeEEEEecCC-----CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564          299 TTDGDPRLLRFRSGHSAPPLCIRFYANG-----RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (907)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~g-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (907)
                        ......+....|...+|.+++|+|..     ..++......++.++.+...                           
T Consensus       163 --gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~---------------------------  213 (1081)
T KOG1538|consen  163 --GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK---------------------------  213 (1081)
T ss_pred             --CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---------------------------
Confidence              22223344445678899999999943     24444555555544443211                           


Q ss_pred             CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 002564          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (907)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~  453 (907)
                                                           .++     ....-.-...|+.+-++|.++++|+.++.+.+|.-
T Consensus       214 -------------------------------------~Ig-----k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR  251 (1081)
T KOG1538|consen  214 -------------------------------------QIG-----KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR  251 (1081)
T ss_pred             -------------------------------------eec-----ccccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence                                                 111     01111245678899999999999999999999974


Q ss_pred             CCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  504 (907)
                      . |..+.+..        .....|..++..|++++++.|+.||+|..|++.
T Consensus       252 ~-GvrLGTvg--------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  252 D-GVRLGTVG--------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             c-CeEEeecc--------ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            3 55555553        466789999999999999999999999999764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=6.1e-23  Score=216.73  Aligned_cols=286  Identities=20%  Similarity=0.313  Sum_probs=218.9

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc----eEEEEeecC--CCCEEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 002564          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSM--RGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~----~~~~~~~~~--~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~  254 (907)
                      .....++...++...|++++. ..+.||.+....    +...+....  .-.+..+.|..-...+||+++..|.|.+||+
T Consensus        39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence            345667777788888888776 467788765332    222221110  1234567777655559999999999999999


Q ss_pred             CC---ceeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEE
Q 002564          255 EK---RRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHI  329 (907)
Q Consensus       255 ~~---~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l  329 (907)
                      ..   .+.+..+. .|...++++.|++..+ +|++||.||+|++||+...+.    ..++.+....|..+.|+| .+..+
T Consensus       118 nk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S----~~t~~~nSESiRDV~fsp~~~~~F  192 (839)
T KOG0269|consen  118 NKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS----KSTFRSNSESIRDVKFSPGYGNKF  192 (839)
T ss_pred             CccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccc----cccccccchhhhceeeccCCCceE
Confidence            87   56666776 8999999999998664 889999999999999987643    344456888999999999 77788


Q ss_pred             EEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeee
Q 002564          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (907)
Q Consensus       330 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~  409 (907)
                      +++...|.+++||++.....                                                            
T Consensus       193 ~s~~dsG~lqlWDlRqp~r~------------------------------------------------------------  212 (839)
T KOG0269|consen  193 ASIHDSGYLQLWDLRQPDRC------------------------------------------------------------  212 (839)
T ss_pred             EEecCCceEEEeeccCchhH------------------------------------------------------------
Confidence            88888888999988643211                                                            


Q ss_pred             ceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEE
Q 002564          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  489 (907)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  489 (907)
                                                                       ...+        .+|.++|.++.|+|++.+|
T Consensus       213 -------------------------------------------------~~k~--------~AH~GpV~c~nwhPnr~~l  235 (839)
T KOG0269|consen  213 -------------------------------------------------EKKL--------TAHNGPVLCLNWHPNREWL  235 (839)
T ss_pred             -------------------------------------------------HHHh--------hcccCceEEEeecCCCcee
Confidence                                                             1111        4899999999999999999


Q ss_pred             EEEecCCeEEEEECCCCc--eeeeeecCcceeEEEEeeCCCE-EEEEe--CCCeEEEEEcccc-eeEEEeecCCCCeeeE
Q 002564          490 ISAGYHGDIKVWDFKGRD--LKSRWEVGCSLVKIVYHRVNGL-LATVA--DDLVIRLFDVVAL-RMVRKFEGHTDRITDF  563 (907)
Q Consensus       490 ~s~~~dg~i~iwd~~~~~--~~~~~~~~~~i~~~~~s~~~~~-la~~~--~dg~I~v~d~~~~-~~~~~~~~h~~~I~~l  563 (907)
                      ||||.|++|+|||+.+++  ...++....++.++.|-|+..+ ||+++  .|-.|+|||+... -+.+++..|+..++.+
T Consensus       236 ATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i  315 (839)
T KOG0269|consen  236 ATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI  315 (839)
T ss_pred             eecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence            999999999999998664  4556666699999999998764 55443  3779999999765 4567889999999999


Q ss_pred             EECC-CCcEEEEEeCCCcEEEEEcCCC
Q 002564          564 CFSE-DGKWLLSSGMDGSLRIWDVILA  589 (907)
Q Consensus       564 ~fsp-dg~~l~s~s~Dg~I~vwd~~~~  589 (907)
                      +|-. |-..|.+++.||+|..-.++++
T Consensus       316 ~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  316 AWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eccCCCceeeEeecCccHHHHhhhhcc
Confidence            9965 4557889999998876666554

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=8.9e-23  Score=203.68  Aligned_cols=243  Identities=17%  Similarity=0.263  Sum_probs=198.5

Q ss_pred             CCCCcceEEEEEecCeEE-EEE---cCeEEEEeCCee------------EEEEcccccceEEEEee---CCEEEEEecCC
Q 002564           53 PQLPKKIRALASYRDYTF-AAY---GNHIAVVKRAHQ------------VATWSRHSAKVNLLLLF---GEHILSIDIDG  113 (907)
Q Consensus        53 ~~~~~~I~~la~~~~~~~-~a~---g~~I~vw~~~~~------------~~~~~~h~~~V~~l~~~---g~~l~s~~~dg  113 (907)
                      -.|++.|+.+..-|+... +|+   ++.|+|||..+.            -.++.||...-.+|+|+   ..+|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            357888888888887544 454   345999985321            12688999987888873   66899999999


Q ss_pred             cEEEEecCCCCcc---ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecC--CCeEEEEEcCCCCCEEEEE
Q 002564          114 NMFIWAFKGIEEN---LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS--TKKKLYEFKGWGSSISSCV  188 (907)
Q Consensus       114 ~v~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~h~~~I~~l~  188 (907)
                      +|++||+......   ..+...+..|...+-.++|||-.. +.+++++.|+.+.|||++  +.++.+..++|.+.|.|++
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~  279 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA  279 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence            9999999876552   445667788889999999999875 678899999999999999  6777888899999999999


Q ss_pred             EcCC-CCEEEEEecCCeEEEEEccCCc-eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce--------
Q 002564          189 SSPA-LDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--------  258 (907)
Q Consensus       189 ~sp~-~~~la~g~~dg~I~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~--------  258 (907)
                      |+|- +.+||+|+.|++|.+||+++-+ .+.++..| ...|.++.|+|+...+||+++.|+.+.|||+..-.        
T Consensus       280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda  358 (422)
T KOG0264|consen  280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA  358 (422)
T ss_pred             eCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence            9995 5688999999999999999765 55566554 89999999999998899999999999999986431        


Q ss_pred             ------eeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEcc
Q 002564          259 ------LQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFD  298 (907)
Q Consensus       259 ------~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~  298 (907)
                            ++..- .||...|..+.|+|+.+ .+++++.|+.+.||...
T Consensus       359 ~dgppEllF~H-gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  359 EDGPPELLFIH-GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccCCcceeEEe-cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                  22333 48999999999999998 56678889999999764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=4e-22  Score=198.37  Aligned_cols=303  Identities=20%  Similarity=0.280  Sum_probs=233.1

Q ss_pred             EECCCceeeeeeecccccCeEEEEEecCCC--EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCE
Q 002564          252 WNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRH  328 (907)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~  328 (907)
                      +|+.+-.....++ -+.+.|++++|+|..+  ++++|..-|.|-+||+++......-+..+..|..+|.++.|+| +...
T Consensus       171 l~l~~~~~~~v~k-v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  171 LDLDDYRILNVAK-VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             cccccceecceeE-ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh
Confidence            4444445555565 6889999999999765  7888888999999999755544455667789999999999999 6779


Q ss_pred             EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEee
Q 002564          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (907)
Q Consensus       329 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~  408 (907)
                      +++.+.||+|++-|+........++.                                                      
T Consensus       250 i~ssSyDGtiR~~D~~~~i~e~v~s~------------------------------------------------------  275 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNISEEVLSL------------------------------------------------------  275 (498)
T ss_pred             eeeeccCceeeeeeecchhhHHHhhc------------------------------------------------------
Confidence            99999999999999876533222111                                                      


Q ss_pred             eceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-C
Q 002564          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-T  487 (907)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~  487 (907)
                                  ......+..+.++.+...++.|..-|...+||+.++.......       .-|...|++++++|.. .
T Consensus       276 ------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~-------~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  276 ------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL-------RLHKKKITSVALNPVCPW  336 (498)
T ss_pred             ------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh-------hhhhcccceeecCCCCch
Confidence                        0112456677888888888888888899999998876533222       3788899999999976 6


Q ss_pred             EEEEEecCCeEEEEECCCCc-----eeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcc----cceeEEEeecCCC
Q 002564          488 LMISAGYHGDIKVWDFKGRD-----LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV----ALRMVRKFEGHTD  558 (907)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~----~~~~~~~~~~h~~  558 (907)
                      +++|++.|++.+|||+..-.     .+..+.+...|.+..|||.+..|++.+.|..|+|||..    ...+...+. |..
T Consensus       337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~  415 (498)
T KOG4328|consen  337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN  415 (498)
T ss_pred             heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence            78999999999999987532     35566777999999999999999999999999999983    333344443 321


Q ss_pred             ------CeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc--eEE-EEECCCCceEEEEEecCCeEEEeecc
Q 002564          559 ------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITA-LSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       559 ------~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~--v~~-l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                            ......|.||..++++|-.-..|-|+|-..++++..+..+..  |.+ ..|+|-+..+++|+..++.|+||.++
T Consensus       416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence                  133467999999999999989999999998888887765443  444 47999998777777666579999875

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=2.3e-21  Score=200.53  Aligned_cols=489  Identities=15%  Similarity=0.172  Sum_probs=302.9

Q ss_pred             cceEEEEEecCeE--EEEEcCeEEEEeC--CeeEEEEcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccce
Q 002564           57 KKIRALASYRDYT--FAAYGNHIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV  130 (907)
Q Consensus        57 ~~I~~la~~~~~~--~~a~g~~I~vw~~--~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~  130 (907)
                      ..|..+||-|||.  .+|.|+++.+||.  |..+.+++||.+.|.++++  +|+.++||+.|..|.+|+-.-..      
T Consensus        13 hci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG------   86 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG------   86 (1081)
T ss_pred             cchheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc------
Confidence            3789999999954  4688999999995  6678889999999999998  79999999999999999854432      


Q ss_pred             eeEec-CCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          131 GHVKL-DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (907)
Q Consensus       131 ~~~~~-~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd  209 (907)
                       .++. |...+..+.|+|-+  ..+++++-+. .-+|....... ...+. ...|.+++|..||++++.|-.+|+|.|-|
T Consensus        87 -~LkYSH~D~IQCMsFNP~~--h~LasCsLsd-FglWS~~qK~V-~K~ks-s~R~~~CsWtnDGqylalG~~nGTIsiRN  160 (1081)
T KOG1538|consen   87 -ILKYSHNDAIQCMSFNPIT--HQLASCSLSD-FGLWSPEQKSV-SKHKS-SSRIICCSWTNDGQYLALGMFNGTISIRN  160 (1081)
T ss_pred             -eeeeccCCeeeEeecCchH--HHhhhcchhh-ccccChhhhhH-Hhhhh-heeEEEeeecCCCcEEEEeccCceEEeec
Confidence             2333 45556666699988  7888887654 78898654333 22222 56889999999999999999999999987


Q ss_pred             ccCCceEEEEee--cCCCCEEEEEEecCCC----CEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEE
Q 002564          210 VRYDEELVTFTH--SMRGAVTALAFSSDGQ----PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL  283 (907)
Q Consensus       210 ~~~~~~~~~~~~--~~~~~v~~l~fs~dg~----~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l  283 (907)
                       ++++....+..  +...+|.+++|+|...    .++++.....++.++.+. |+.+..-+ .-.-...|+.+.++|.++
T Consensus       161 -k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP~CisYf~NGEy~  237 (1081)
T KOG1538|consen  161 -KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDPCCISYFTNGEYI  237 (1081)
T ss_pred             -CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCchhheeccCCcEE
Confidence             44655555543  3467999999998632    478888888999999874 55554333 344556899999999999


Q ss_pred             EEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (907)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  363 (907)
                      +.||.|+.+++|.-+     ...+.+.......|+.++..|+++.++.|..||+|..|++...............++. -
T Consensus       238 LiGGsdk~L~~fTR~-----GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~s-M  311 (1081)
T KOG1538|consen  238 LLGGSDKQLSLFTRD-----GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDS-M  311 (1081)
T ss_pred             EEccCCCceEEEeec-----CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhh-h
Confidence            999999999999422     2455666667789999999999999999999999999998654322111110000000 0


Q ss_pred             ccchhhhcccCceeEeeecccc--cccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEE
Q 002564          364 LKMKEEELKLKPVIAFDCAEIR--ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  441 (907)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  441 (907)
                      -.+-...+....-..+.+...-  -.-..+-++.. -...+.+|...+........+....-.....+--.--+++.+++
T Consensus       312 tDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQ-Lpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVl  390 (1081)
T KOG1538|consen  312 TDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQ-LPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVL  390 (1081)
T ss_pred             HHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheec-ccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEE
Confidence            0000000000000000000000  00000000100 11233344433222111000000000011111112223455544


Q ss_pred             EeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEE--cC-CCCEEEEEecCCeEEEEECCCCceeeeeecCcce
Q 002564          442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--DS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL  518 (907)
Q Consensus       442 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i  518 (907)
                      + .+..+..+|...-..+ ..         ...+-|.-+.+  -| ...-|+.|-.+|.|.-.=+++.-++-.......|
T Consensus       391 C-qekrLqClDF~Gvk~R-eW---------~M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~~~tAv  459 (1081)
T KOG1538|consen  391 C-QEKRLQCLDFSGVKER-EW---------QMESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLKQATAV  459 (1081)
T ss_pred             E-cccceeeecccchhhh-hh---------hHHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheeccccee
Confidence            3 5666777776532221 11         01111111111  12 2345777777776543334444444444455789


Q ss_pred             eEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCc-EEEEEeCCCcEEE
Q 002564          519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRI  583 (907)
Q Consensus       519 ~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~-~l~s~s~Dg~I~v  583 (907)
                      .|+..+.....||+..+.++..++|+.+++.+.+-.    .+++++|+.... +|+..+ .|.+.|
T Consensus       460 rClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEp----g~nSV~wNT~~E~MlcfT~-~g~L~V  520 (1081)
T KOG1538|consen  460 RCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEP----GANSVAWNTQCEDMLCFTG-GGYLNV  520 (1081)
T ss_pred             EEeeccCCcceEEEEccCCeEEEEEccCCceEeecC----CCceEEeeccccceEEEec-CCceEE
Confidence            999999999999999999999999999998876433    477889976443 444332 254433

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=5.3e-22  Score=205.16  Aligned_cols=386  Identities=16%  Similarity=0.171  Sum_probs=261.3

Q ss_pred             CCEEEEEecCCcEEEEecCCCeE------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEE--Eeec
Q 002564          151 LNKVIVGSQEGSLQLWNISTKKK------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT--FTHS  222 (907)
Q Consensus       151 ~~~l~~~s~dg~i~iwd~~~~~~------~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~--~~~~  222 (907)
                      -.+|+++..+|.|.++|.+...-      ++.+..|...|..+.|-|....|++++.|.++++||+++.+....  +.+ 
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G-  142 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG-  142 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc-
Confidence            36899999999999999865432      355678999999999999667899999999999999999887766  444 


Q ss_pred             CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee---------------------------eeeeecccccCeEE--
Q 002564          223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---------------------------QSVIREAHDNAIIS--  273 (907)
Q Consensus       223 ~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~---------------------------~~~~~~~h~~~V~~--  273 (907)
                      |.+.|.+++|.|+...++++|+.||.|.|||+.-...                           +... .+|...|.+  
T Consensus       143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ssv  221 (720)
T KOG0321|consen  143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW-KAASNTIFSSV  221 (720)
T ss_pred             cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc-ccccCceeeee
Confidence            5899999999999998999999999999999863320                           0111 145555665  


Q ss_pred             -EEEecCCCEEEEEcC-CCcEEEEEccCCCCCc----ceeEeccCC---CCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564          274 -LHFFANEPVLMSASA-DNSIKMWIFDTTDGDP----RLLRFRSGH---SAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       274 -l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~----~~~~~~~~h---~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (907)
                       +.+..|+..|+++|. |+.|+|||+.......    .....+.-|   ...+.++.....|.+|+....|++|..|++.
T Consensus       222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~  301 (720)
T KOG0321|consen  222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR  301 (720)
T ss_pred             EEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence             666778889999988 9999999998764321    112222233   3466777777778888887789999999987


Q ss_pred             ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCC
Q 002564          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (907)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~  424 (907)
                      +........                         +..                                 +      ...
T Consensus       302 s~s~sP~~~-------------------------~sg---------------------------------~------~~~  317 (720)
T KOG0321|consen  302 SLSISPVAE-------------------------FSG---------------------------------K------LNS  317 (720)
T ss_pred             ccCcCchhh-------------------------ccC---------------------------------c------ccc
Confidence            543221100                         000                                 0      001


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEEC
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDF  503 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~  503 (907)
                      ..-..-..+|++.+++.|+.++..++|.+.+...-....       .+|...|++++|.|.. .-+++++.|..+++|++
T Consensus       318 sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-------~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  318 SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-------LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------hCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence            222344679999999999999999999998876655443       5999999999998844 45778899999999998


Q ss_pred             CCCcee--------------eeeecC-cce-------------------------eEEEEeeCCCEEEEEe----CCCeE
Q 002564          504 KGRDLK--------------SRWEVG-CSL-------------------------VKIVYHRVNGLLATVA----DDLVI  539 (907)
Q Consensus       504 ~~~~~~--------------~~~~~~-~~i-------------------------~~~~~s~~~~~la~~~----~dg~I  539 (907)
                      ..+-..              ..++.+ ..+                         ..++..|.+.-...+.    ..-.|
T Consensus       391 ~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR~~~~r~~ssP~s~a~~~s~~s~~~~~~~t~qt~~i  470 (720)
T KOG0321|consen  391 SNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPREGMNRISSSPVSLACSPSGASDDCGYGVTDQTSGI  470 (720)
T ss_pred             cCchhhccccccchhhhhhhhhhhccccccccccccccccccchhhhccccccCccchhcCcCCcccccCCCcccccccc
Confidence            654111              111110 011                         1112222222221111    11123


Q ss_pred             EEEEcccceeEEE--eecCCCCeeeEEECCCCcEEEEEeC-----------CCcEEEEEcCCCceeeEeeeCCceEEEEE
Q 002564          540 RLFDVVALRMVRK--FEGHTDRITDFCFSEDGKWLLSSGM-----------DGSLRIWDVILARQIDAIHVDVSITALSL  606 (907)
Q Consensus       540 ~v~d~~~~~~~~~--~~~h~~~I~~l~fspdg~~l~s~s~-----------Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~  606 (907)
                      ...+....+....  -.+|...|+...+++.++.+++.+-           ++.+++|...........+.......+.|
T Consensus       471 ~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~pps~~~r~ar~~~r~if  550 (720)
T KOG0321|consen  471 VVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHPPSANLREARKKSRLIF  550 (720)
T ss_pred             eecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCCchhhhcccccccceec
Confidence            3333333322211  2246777888888888878888887           88999998776555554443334555666


Q ss_pred             CCC
Q 002564          607 SPN  609 (907)
Q Consensus       607 spd  609 (907)
                      +|-
T Consensus       551 s~~  553 (720)
T KOG0321|consen  551 SPG  553 (720)
T ss_pred             cCc
Confidence            653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=6.9e-22  Score=185.27  Aligned_cols=293  Identities=17%  Similarity=0.266  Sum_probs=226.5

Q ss_pred             CCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe------------EE---EEEcCCCCCEEEEEEcC-CCCEEEEE
Q 002564          136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK------------KL---YEFKGWGSSISSCVSSP-ALDVVAVG  199 (907)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~------------~~---~~~~~h~~~I~~l~~sp-~~~~la~g  199 (907)
                      |.+.+.+..+.+..- +++++|+.||.|.+||+++..            ++   ..-.+|.-.|..+.|-| |...+.++
T Consensus        42 HgGsvNsL~id~teg-rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEG-RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             CCCccceeeeccccc-eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            556666666666543 799999999999999997543            11   11246888999999998 45578888


Q ss_pred             ecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCC--CCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEe
Q 002564          200 CSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG--QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF  277 (907)
Q Consensus       200 ~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg--~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~  277 (907)
                      +-|.++++||..+-+....|...  +.|++-+++|-.  ..++|+|..+-.|++.|+.+|.+.+++. +|...|.++.|+
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~me--~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Ws  197 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFKME--GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWS  197 (397)
T ss_pred             cccceEEEeecccceeeEEeecC--ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEec
Confidence            99999999999999999999875  789999999843  3478889999999999999999999999 999999999999


Q ss_pred             cCCC-EEEEEcCCCcEEEEEccCCCCC-----------cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEcee
Q 002564          278 ANEP-VLMSASADNSIKMWIFDTTDGD-----------PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (907)
Q Consensus       278 ~~~~-~l~s~~~d~~i~vw~~~~~~~~-----------~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~  345 (907)
                      |... .|++|+.||.|++||++...+-           +..++....|.+.+..++|..++.++++++.|..+++|+...
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence            9876 6788999999999999866332           233344567889999999999999999999999999999877


Q ss_pred             cccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCC
Q 002564          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (907)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~  425 (907)
                      +.....-..+....+                                                              ...
T Consensus       278 G~ntl~~~g~~~~n~--------------------------------------------------------------~~~  295 (397)
T KOG4283|consen  278 GRNTLREFGPIIHNQ--------------------------------------------------------------TTS  295 (397)
T ss_pred             Ccccccccccccccc--------------------------------------------------------------ccc
Confidence            654322111000000                                                              001


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564          426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (907)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  503 (907)
                      ....+. +.+...++.--.++.+.++++-++..+..+.        .|...|.+.++-|+=+...++..|+.+..|-.
T Consensus       296 ~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~--------~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  296 FAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS--------THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee--------cccceeeEEeecCchhhhhccccCCccccccc
Confidence            111122 2233333333455889999999999988885        89889999999999999999999999999975

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=7.3e-22  Score=202.39  Aligned_cols=317  Identities=14%  Similarity=0.188  Sum_probs=235.7

Q ss_pred             cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC-EEEEEeCCCCEEEEEc
Q 002564          265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSV  343 (907)
Q Consensus       265 ~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~-~l~s~~~dg~i~iwd~  343 (907)
                      .+|.+.|.++...|.|.+|++|+.||+|+||.+.++    ++++.. ...+.|.|++|+|.+. .++....++.+.+.+.
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg----Rcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp  471 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG----RCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP  471 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc----eEEEEE-eecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence            399999999999999999999999999999988876    666655 3456899999999553 3344444444666665


Q ss_pred             eecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCC
Q 002564          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (907)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~  423 (907)
                      .-+.....-.....             +.-.|                  .-...+.++..|.-........-+.....+
T Consensus       472 ~~G~~~e~~~t~el-------------l~~~~------------------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~  520 (733)
T KOG0650|consen  472 IFGDRLEVGPTKEL-------------LASAP------------------NESEPDAAVVTWSRASLDELEKGVCIVIKH  520 (733)
T ss_pred             cccchhhhcchhhh-------------hhcCC------------------CccCCcccceeechhhhhhhccceEEEEec
Confidence            43322111000000             00000                  001123355566655333222222333356


Q ss_pred             CCceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEE
Q 002564          424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (907)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  500 (907)
                      ...|+.+.|+..|.|+++...+   ..|.|+++........|.        ...+.|.++.|+|...+|++++. ..|++
T Consensus       521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~--------kskG~vq~v~FHPs~p~lfVaTq-~~vRi  591 (733)
T KOG0650|consen  521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR--------KSKGLVQRVKFHPSKPYLFVATQ-RSVRI  591 (733)
T ss_pred             CCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh--------hcCCceeEEEecCCCceEEEEec-cceEE
Confidence            6899999999999999987664   478889888766655553        56678999999999999988886 78999


Q ss_pred             EECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-eeEEEeecCCCCeeeEEECCCCcEEEEEeCC
Q 002564          501 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMD  578 (907)
Q Consensus       501 wd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D  578 (907)
                      ||+..+.++..+... ..|..++.+|.|..|++|+.|+.+..||+.-. ++.+++.-|...+++++|++.-.++++|+.|
T Consensus       592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD  671 (733)
T KOG0650|consen  592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD  671 (733)
T ss_pred             EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence            999998888776555 68999999999999999999999999999754 6788899999999999999999999999999


Q ss_pred             CcEEEEE------cCCCc---eeeEeeeCCc-----eEEEEECCCCceEEEEEecCCeEEEee
Q 002564          579 GSLRIWD------VILAR---QIDAIHVDVS-----ITALSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       579 g~I~vwd------~~~~~---~~~~~~~~~~-----v~~l~~spdg~~lat~~~d~~~i~lW~  627 (907)
                      |++.|+.      +..+-   ++..+++|..     |..+.|+|...+|.+++.|+ +|++|.
T Consensus       672 gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~-tirlfT  733 (733)
T KOG0650|consen  672 GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG-TIRLFT  733 (733)
T ss_pred             CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc-eEEeeC
Confidence            9999984      32232   3355555542     78888999999999999999 799994

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4.3e-21  Score=181.49  Aligned_cols=288  Identities=15%  Similarity=0.256  Sum_probs=213.5

Q ss_pred             eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec--CCCEEEEEeCCCCE
Q 002564          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAF  338 (907)
Q Consensus       261 ~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~g~~l~s~~~dg~i  338 (907)
                      ..+..+|..-|.++.|.+-|+.+++|+.|++|+|||++..++.+.+....+.|.+.|..+.|.+  -|+.+++++.|+++
T Consensus         6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen    6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            3445589999999999999999999999999999999888999999999999999999999976  68999999999999


Q ss_pred             EEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeee
Q 002564          339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR  418 (907)
Q Consensus       339 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~  418 (907)
                      .+|.-.......                                                  .-+-|...         .
T Consensus        86 ~iWEE~~~~~~~--------------------------------------------------~~~~Wv~~---------t  106 (361)
T KOG2445|consen   86 SIWEEQEKSEEA--------------------------------------------------HGRRWVRR---------T  106 (361)
T ss_pred             eeeeeccccccc--------------------------------------------------ccceeEEE---------E
Confidence            999743111100                                                  00111111         1


Q ss_pred             cCCCCCCceEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccceeeecccc-----ccccCcCCcEEEEEEcCCC---CE
Q 002564          419 PCPENPTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-----RSNYAHNGEVVGVACDSTN---TL  488 (907)
Q Consensus       419 ~~~~~~~~v~~~~~s~~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~h~~~v~~l~~s~~~---~~  488 (907)
                      ......+.|+.+.|.|.  |-.+++++.||.+++|+......+........     .....+..+..|+.|+|..   .+
T Consensus       107 tl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~  186 (361)
T KOG2445|consen  107 TLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPL  186 (361)
T ss_pred             EeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCce
Confidence            11133478999999985  67899999999999998765443332221100     0122466788899998743   57


Q ss_pred             EEEEecC-----CeEEEEECCCCc--e--eeee-ecCcceeEEEEeeCC----CEEEEEeCCCeEEEEEcccc-------
Q 002564          489 MISAGYH-----GDIKVWDFKGRD--L--KSRW-EVGCSLVKIVYHRVN----GLLATVADDLVIRLFDVVAL-------  547 (907)
Q Consensus       489 l~s~~~d-----g~i~iwd~~~~~--~--~~~~-~~~~~i~~~~~s~~~----~~la~~~~dg~I~v~d~~~~-------  547 (907)
                      |+.|+.+     +.++||....+.  .  +.++ .+..+|+.++|.|+-    .+||+++.|| |+||.+...       
T Consensus       187 iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~e  265 (361)
T KOG2445|consen  187 IAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEE  265 (361)
T ss_pred             EEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhh
Confidence            7777765     478999876543  2  2222 345899999999963    4899999999 999998731       


Q ss_pred             -------------eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcC---CCceeeEeeeCCceEEEEECC
Q 002564          548 -------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI---LARQIDAIHVDVSITALSLSP  608 (907)
Q Consensus       548 -------------~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~---~~~~~~~~~~~~~v~~l~~sp  608 (907)
                                   +.+..+.+|.+.|..+.|+-.|..|++.|.||+||+|...   ..+|...+.....++...|++
T Consensus       266 e~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~  342 (361)
T KOG2445|consen  266 EVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ  342 (361)
T ss_pred             cccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence                         3456688999999999999999999999999999999754   234556666555555555543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=2.7e-21  Score=192.55  Aligned_cols=304  Identities=15%  Similarity=0.171  Sum_probs=231.2

Q ss_pred             EecCCCeEEEEEcCCCCCEEEEEEcCCC--CEEEEEecCCeEEEEEccCC---c-eEEEEeecCCCCEEEEEEecCCCCE
Q 002564          166 WNISTKKKLYEFKGWGSSISSCVSSPAL--DVVAVGCSDGKIHVHNVRYD---E-ELVTFTHSMRGAVTALAFSSDGQPL  239 (907)
Q Consensus       166 wd~~~~~~~~~~~~h~~~I~~l~~sp~~--~~la~g~~dg~I~iwd~~~~---~-~~~~~~~~~~~~v~~l~fs~dg~~~  239 (907)
                      +|+.+-......+.+.++|++++|+|..  +++|+|..-|.|-+||+.+.   + .+..+. .|.++|.+|.|+|.+...
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhh
Confidence            4445555666677789999999999975  48899999999999999522   2 234444 458899999999988778


Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeec-ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCe
Q 002564          240 LASGASSGVISIWNLEKRRLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL  318 (907)
Q Consensus       240 l~sg~~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~  318 (907)
                      +.+.+.||+|+.-|++++.....+.. .....+.++.|+.+.+.++.++.=|...+||.++....   ...+.-|...|.
T Consensus       250 i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~---~~~~~lh~kKI~  326 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE---YENLRLHKKKIT  326 (498)
T ss_pred             eeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc---chhhhhhhcccc
Confidence            99999999999999988754444431 24456788899998888888888789999999887643   333446888999


Q ss_pred             EEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEee
Q 002564          319 CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  397 (907)
Q Consensus       319 ~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  397 (907)
                      +++++| ...++++++.|++.+|||++.-....                                               
T Consensus       327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----------------------------------------------  359 (498)
T KOG4328|consen  327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKA-----------------------------------------------  359 (498)
T ss_pred             eeecCCCCchheeecccCcceeeeehhhhcCCC-----------------------------------------------
Confidence            999999 66789999999999999986422110                                               


Q ss_pred             CCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcE
Q 002564          398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (907)
Q Consensus       398 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v  477 (907)
                                                 +        |    ++                   .         ...|...|
T Consensus       360 ---------------------------s--------p----~l-------------------s---------t~~HrrsV  372 (498)
T KOG4328|consen  360 ---------------------------S--------P----FL-------------------S---------TLPHRRSV  372 (498)
T ss_pred             ---------------------------C--------c----ce-------------------e---------ccccccee
Confidence                                       0        0    00                   0         13789999


Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEECC----CCceeeeeecC------cceeEEEEeeCCCEEEEEeCCCeEEEEEcccc
Q 002564          478 VGVACDSTNTLMISAGYHGDIKVWDFK----GRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (907)
Q Consensus       478 ~~l~~s~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~  547 (907)
                      .+..|+|.+-.|++.+.|..|+|||..    .-.+..++.|.      -......|.|+..++++|-.-..|-|+|-..+
T Consensus       373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG  452 (498)
T ss_pred             eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence            999999988889999999999999983    44555556554      23446789999999999999999999999999


Q ss_pred             eeEEEeecCCC-Ceee-EEECCCCc-EEEEEeCCCcEEEEEcC
Q 002564          548 RMVRKFEGHTD-RITD-FCFSEDGK-WLLSSGMDGSLRIWDVI  587 (907)
Q Consensus       548 ~~~~~~~~h~~-~I~~-l~fspdg~-~l~s~s~Dg~I~vwd~~  587 (907)
                      +.+..+..... .|.+ ..|+|-+. +++-++..|.|.||--+
T Consensus       453 q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  453 QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             EEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence            98888765543 5555 46999887 44444567888888644

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1e-20  Score=179.00  Aligned_cols=254  Identities=15%  Similarity=0.203  Sum_probs=200.4

Q ss_pred             EcccccceEEEEee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEE
Q 002564           89 WSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (907)
Q Consensus        89 ~~~h~~~V~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iw  166 (907)
                      -.+|.+-|+++.||  |+++++|+.|++|+|||..+..-..........|.+.+..+.+.+..|.+.+++++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            35889999999975  9999999999999999987666655556778889999999999888888999999999999999


Q ss_pred             ecC---------CCeEEEEEcCCCCCEEEEEEcCC--CCEEEEEecCCeEEEEEccCCceEE------EEe------ecC
Q 002564          167 NIS---------TKKKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYDEELV------TFT------HSM  223 (907)
Q Consensus       167 d~~---------~~~~~~~~~~h~~~I~~l~~sp~--~~~la~g~~dg~I~iwd~~~~~~~~------~~~------~~~  223 (907)
                      .-.         .-....++....+.|+.+.|.|.  |-.+|+++.||.++||+...--.+.      .+.      ..+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            641         11244567777899999999996  5689999999999999875432222      222      112


Q ss_pred             CCCEEEEEEecCC--CCEEEEEeCC-----CcEEEEECCCc----eeeeeeecccccCeEEEEEecCC----CEEEEEcC
Q 002564          224 RGAVTALAFSSDG--QPLLASGASS-----GVISIWNLEKR----RLQSVIREAHDNAIISLHFFANE----PVLMSASA  288 (907)
Q Consensus       224 ~~~v~~l~fs~dg--~~~l~sg~~d-----g~I~iwd~~~~----~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~~~  288 (907)
                      ..+..|+.|+|..  +.++|+|+.+     +.+.||....+    ..+..+. +|..+|++++|.|+-    ..|++++.
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEeec
Confidence            4578899999752  3478888855     57889976554    3445566 899999999999963    48999999


Q ss_pred             CCcEEEEEccCC----------------CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564          289 DNSIKMWIFDTT----------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       289 d~~i~vw~~~~~----------------~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (907)
                      || |+||.+...                +-....+..+.+|.+.|..++|+-.|..|.+.|.||.+|+|...
T Consensus       248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            99 999998731                11123455678999999999999999999999999999999753

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=9e-19  Score=197.01  Aligned_cols=372  Identities=26%  Similarity=0.457  Sum_probs=290.2

Q ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc-eEEEEeecCCCCEEEEEE-ecCCCCEEEEEe-CCCcEEE
Q 002564          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAF-SSDGQPLLASGA-SSGVISI  251 (907)
Q Consensus       175 ~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~-~~~~~~~~~~~~v~~l~f-s~dg~~~l~sg~-~dg~I~i  251 (907)
                      ..+..|...+.++.+.+.+..++.++.|+.+.+|+...+. .+..+...+...+..+.+ .+++..+++..+ .++.+.+
T Consensus        59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            3456789999999999999999999999999999999887 666666643346777777 777763444434 4899999


Q ss_pred             EECCC-ceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC-E
Q 002564          252 WNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-H  328 (907)
Q Consensus       252 wd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~-~  328 (907)
                      |+... ......+. .|...|..+.|+|++..+++++. |+.+++|+....    ..+....+|...+.+++|+|++. .
T Consensus       139 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~  213 (466)
T COG2319         139 WDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG----KPLSTLAGHTDPVSSLAFSPDGGLL  213 (466)
T ss_pred             EEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----ceEEeeccCCCceEEEEEcCCcceE
Confidence            99998 67777777 89999999999999998888886 999999988762    45666778999999999999987 5


Q ss_pred             EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEee
Q 002564          329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ  408 (907)
Q Consensus       329 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~  408 (907)
                      +++++.|+.+++|+.........                                                         
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~---------------------------------------------------------  236 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRS---------------------------------------------------------  236 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEee---------------------------------------------------------
Confidence            55569999999997652221110                                                         


Q ss_pred             eceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc-ceeeeccccccccCcCCcEEEEEEcCCCC
Q 002564          409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (907)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  487 (907)
                                ....+.... ...+++++.++++++.++.+++|+...... ...+        ..|...+.++.++|++.
T Consensus       237 ----------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~  297 (466)
T COG2319         237 ----------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------SGHSSSVLSVAFSPDGK  297 (466)
T ss_pred             ----------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------ecCCccEEEEEECCCCC
Confidence                      011222332 228999998999999999999999987765 3322        27889999999999888


Q ss_pred             EEEEEecCCeEEEEECCCCceeeeee--cC-cceeEEEEeeCCCEEEEE-eCCCeEEEEEcccceeEEEeecCCCCeeeE
Q 002564          488 LMISAGYHGDIKVWDFKGRDLKSRWE--VG-CSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDF  563 (907)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~~~~~~~~--~~-~~i~~~~~s~~~~~la~~-~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l  563 (907)
                      .+++++.|+.+++|+..+........  .+ ..+..+.+.+++..++.+ ..|+.+.+|+............+. .+..+
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~  376 (466)
T COG2319         298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSV  376 (466)
T ss_pred             EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEE
Confidence            88889999999999998887666654  33 458888883332555555 678899999998887333333222 28899


Q ss_pred             EECCCCcEEEE-EeCCCcEEEEEcCCCceeeEeeeC-CceEEEEECCCCceEEEEEecCCeEEEeeccc
Q 002564          564 CFSEDGKWLLS-SGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (907)
Q Consensus       564 ~fspdg~~l~s-~s~Dg~I~vwd~~~~~~~~~~~~~-~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~  630 (907)
                      .+++ ....+. +..++.+.+|+............. ..+....+++++..+++++.+. .+.+|+...
T Consensus       377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  443 (466)
T COG2319         377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN-TIRLWDLKT  443 (466)
T ss_pred             EECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCC-cEEEEeccC
Confidence            9999 544444 688999999999999888888777 7899999999999999987777 699999865

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=1.7e-21  Score=195.01  Aligned_cols=289  Identities=14%  Similarity=0.223  Sum_probs=227.6

Q ss_pred             CCeEEEEEccCCceEEEEeecC-CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeEEEEEec
Q 002564          202 DGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFA  278 (907)
Q Consensus       202 dg~I~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~  278 (907)
                      ...+++||....+....+..+. ...+.++.|.......+++.+.|..+++|.-...  +....-. .....-.|++...
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~~s   89 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVACAS   89 (673)
T ss_pred             CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeec-cccchHHHHhhhh
Confidence            3479999998776655555432 2358899998776423334457788999974332  1111111 1222334555555


Q ss_pred             CCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhh
Q 002564          279 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA  358 (907)
Q Consensus       279 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  358 (907)
                      ...++++||..+.|+|||+...    .+.+.+.+|...|+++.|.-...+|++++..|.|.+..+.++....++..    
T Consensus        90 ~S~y~~sgG~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~----  161 (673)
T KOG4378|consen   90 QSLYEISGGQSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI----  161 (673)
T ss_pred             cceeeeccCcCceeeehhhHHH----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec----
Confidence            5589999999999999999844    67788899999999999999899999999999999999887765554422    


Q ss_pred             HHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCE
Q 002564          359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF  438 (907)
Q Consensus       359 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  438 (907)
                                                                                     +....++-+.+++..++
T Consensus       162 ---------------------------------------------------------------~sgqsvRll~ys~skr~  178 (673)
T KOG4378|consen  162 ---------------------------------------------------------------DSGQSVRLLRYSPSKRF  178 (673)
T ss_pred             ---------------------------------------------------------------CCCCeEEEeecccccce
Confidence                                                                           11244567788888765


Q ss_pred             -EEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECCCCceeeeeecCc
Q 002564          439 -AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVGC  516 (907)
Q Consensus       439 -l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  516 (907)
                       |.+++.+|.|.+||++...+...+.       ..|..+..+|+|+|.+ .+|++.|.|..|.+||....+....+....
T Consensus       179 lL~~asd~G~VtlwDv~g~sp~~~~~-------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~  251 (673)
T KOG4378|consen  179 LLSIASDKGAVTLWDVQGMSPIFHAS-------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH  251 (673)
T ss_pred             eeEeeccCCeEEEEeccCCCcccchh-------hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC
Confidence             4577889999999999988887776       5899999999999976 677899999999999999999999999999


Q ss_pred             ceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-eeEEEeecCCCCeeeEEECCCC
Q 002564          517 SLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG  569 (907)
Q Consensus       517 ~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg  569 (907)
                      +...++|+++|.+|++|...|.|..||++.. .++..+..|...|++++|-|..
T Consensus       252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            9999999999999999999999999999854 5788899999999999998764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=3e-21  Score=199.66  Aligned_cols=318  Identities=17%  Similarity=0.191  Sum_probs=218.0

Q ss_pred             EEEEEec--CCCCEEEEEeCCCcEEEEECCCceee------eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 002564          228 TALAFSS--DGQPLLASGASSGVISIWNLEKRRLQ------SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (907)
Q Consensus       228 ~~l~fs~--dg~~~l~sg~~dg~I~iwd~~~~~~~------~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~  299 (907)
                      .+..|++  +.+++|+.+.++|.|.++|.......      ... .+|.+.|..+.|.|....|++++.|.++++||+..
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence            3466654  45579999999999999998765332      333 38999999999999888999999999999999887


Q ss_pred             CCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeE
Q 002564          300 TDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (907)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  378 (907)
                      .....  .....||.+.|.+++|.+ +...|++|+.||.+.+||++-..... +...     ...........+ .|.. 
T Consensus       132 s~l~G--~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~-~e~~-----~~~~~~~~n~~p-tpsk-  201 (720)
T KOG0321|consen  132 SRLVG--GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA-LEEF-----DNRIYGRHNTAP-TPSK-  201 (720)
T ss_pred             ceeec--ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh-HHHH-----hhhhhccccCCC-CCCc-
Confidence            64321  224679999999999999 66788899999999999997654110 0000     000000000000 0000 


Q ss_pred             eeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEE---EEEcCCCCEEEEEeC-CCcEEEEeCC
Q 002564          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA---CTISACGNFAVLGTA-GGWIERFNLQ  454 (907)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~---~~~s~~g~~l~~g~~-dg~i~i~d~~  454 (907)
                        .                ....++-|-               .+...+.+   +.+..|...|++++. |+.|++||+.
T Consensus       202 --p----------------~~kr~~k~k---------------A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR  248 (720)
T KOG0321|consen  202 --P----------------LKKRIRKWK---------------AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR  248 (720)
T ss_pred             --h----------------hhccccccc---------------cccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence              0                000111111               11223333   455567777777776 9999999998


Q ss_pred             CCccceeeeccccccccCc---CCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCc--eeeeeecC---cceeEEEEeeC
Q 002564          455 SGISRGSYLDMSERSNYAH---NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVG---CSLVKIVYHRV  526 (907)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~---~~i~~~~~s~~  526 (907)
                      .................-|   .-.++++..+..|.+|.+.+.|+.|++|++.+-.  ++..+.+.   .--..-..+|+
T Consensus       249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd  328 (720)
T KOG0321|consen  249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD  328 (720)
T ss_pred             ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence            7665544433322222334   3468889999999999888889999999997643  22333222   22234457899


Q ss_pred             CCEEEEEeCCCeEEEEEccccee-EEEeecCCCCeeeEEECCCC-cEEEEEeCCCcEEEEEcCCC
Q 002564          527 NGLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILA  589 (907)
Q Consensus       527 ~~~la~~~~dg~I~v~d~~~~~~-~~~~~~h~~~I~~l~fspdg-~~l~s~s~Dg~I~vwd~~~~  589 (907)
                      +.++++|+.|...++|.+.+.+. ...+.||.-.|++++|.|.. .-+++++.|..+++|++..+
T Consensus       329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            99999999999999999987654 56678999999999998843 34777799999999999654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=3e-18  Score=192.75  Aligned_cols=369  Identities=27%  Similarity=0.508  Sum_probs=289.6

Q ss_pred             cCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe-EEEEEcCCC-CCEEEEEE-cCCCC-EEEEEec-CCeEEEEE
Q 002564          135 LDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK-KLYEFKGWG-SSISSCVS-SPALD-VVAVGCS-DGKIHVHN  209 (907)
Q Consensus       135 ~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~h~-~~I~~l~~-sp~~~-~la~g~~-dg~I~iwd  209 (907)
                      .+...+....+.+.+  ..++.++.++.+.+|+...+. .+..+.++. ..+..+.+ ++++. +++..+. |+.+.+|+
T Consensus        63 ~~~~~i~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  140 (466)
T COG2319          63 GHEDSITSIAFSPDG--ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD  140 (466)
T ss_pred             eccceEEEEEECCCC--cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence            355566777788888  778888899999999998887 777777644 37787777 88887 5555444 89999999


Q ss_pred             ccC-CceEEEEeecCCCCEEEEEEecCCCCEEEEEeC-CCcEEEEECCCceeeeeeecccccCeEEEEEecCCC-EEEEE
Q 002564          210 VRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSA  286 (907)
Q Consensus       210 ~~~-~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~  286 (907)
                      ... ......+..+ ...|.+++|+|++. .+++++. ++.+++|+...+..+..+. +|...|.+++|+|+++ .++++
T Consensus       141 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~  217 (466)
T COG2319         141 LSTPGKLIRTLEGH-SESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASG  217 (466)
T ss_pred             ecCCCeEEEEEecC-cccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEe
Confidence            997 5666666655 78899999999998 7777775 9999999999988888888 7999999999999998 55555


Q ss_pred             cCCCcEEEEEccCCCCCcceeE-eccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceeccc-ceeechhhhhHHHhhc
Q 002564          287 SADNSIKMWIFDTTDGDPRLLR-FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ-SRELSQRHVAKRARKL  364 (907)
Q Consensus       287 ~~d~~i~vw~~~~~~~~~~~~~-~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~  364 (907)
                      +.|+.+++|+....    .... .+.+|.... ...|++++..+++++.|+.+++|+...... ...             
T Consensus       218 ~~d~~i~~wd~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------  279 (466)
T COG2319         218 SSDGTIRLWDLSTG----KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT-------------  279 (466)
T ss_pred             cCCCcEEEEECCCC----cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE-------------
Confidence            89999999966522    3444 577888876 448999988999999999999999865433 000             


Q ss_pred             cchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC
Q 002564          365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA  444 (907)
Q Consensus       365 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  444 (907)
                                                                          .   ..|...+.++.+.|++..+++++.
T Consensus       280 ----------------------------------------------------~---~~~~~~v~~~~~~~~~~~~~~~~~  304 (466)
T COG2319         280 ----------------------------------------------------L---SGHSSSVLSVAFSPDGKLLASGSS  304 (466)
T ss_pred             ----------------------------------------------------E---ecCCccEEEEEECCCCCEEEEeeC
Confidence                                                                0   123478899999999988888999


Q ss_pred             CCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCceeeeeecCcceeEEEE
Q 002564          445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY  523 (907)
Q Consensus       445 dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~  523 (907)
                      ++.+.+|+...........      ...|...+..+.+.+++..++.+ ..|+.+.+|+...............+..+.+
T Consensus       305 d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (466)
T COG2319         305 DGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSF  378 (466)
T ss_pred             CCcEEEEEcCCCceEEEee------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEE
Confidence            9999999888776665543      13677789999994332456555 6889999999988873333333344888888


Q ss_pred             eeCCCEEEE-EeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCC
Q 002564          524 HRVNGLLAT-VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (907)
Q Consensus       524 s~~~~~la~-~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~  588 (907)
                      ++ ...... +..++.+.+|+............+...+....+++++..+++++.++.+++|+..+
T Consensus       379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            88 543343 68889999999999888877776557899999999999999999999999999988

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6.9e-22  Score=208.85  Aligned_cols=282  Identities=16%  Similarity=0.237  Sum_probs=212.5

Q ss_pred             CcceEEEEEecCeEEEEE-cCe-EEEEeCCe------eEEEEccccc---ceEEEEe---eCCEEEEEecCCcEEEEecC
Q 002564           56 PKKIRALASYRDYTFAAY-GNH-IAVVKRAH------QVATWSRHSA---KVNLLLL---FGEHILSIDIDGNMFIWAFK  121 (907)
Q Consensus        56 ~~~I~~la~~~~~~~~a~-g~~-I~vw~~~~------~~~~~~~h~~---~V~~l~~---~g~~l~s~~~dg~v~vWd~~  121 (907)
                      +..+.+|+..++-.-++. |.. ..+|....      ....+++...   .+..+.|   +.++|++++..|.|.+||+.
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            566788888888444333 433 55654221      1111222111   1222333   57899999999999999998


Q ss_pred             CCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCC-CCEEEEEe
Q 002564          122 GIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGC  200 (907)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-~~~la~g~  200 (907)
                      ..... ..+..+.-|...+....||+... ++|++|+.||+|++||++..+-..++.+....|..+.|+|. +..++++.
T Consensus       119 k~~rn-k~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  119 KSIRN-KLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             ccccc-hhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence            73111 11445666777778888998876 89999999999999999999999999999999999999995 67899999


Q ss_pred             cCCeEEEEEccCCc-eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC
Q 002564          201 SDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN  279 (907)
Q Consensus       201 ~dg~I~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~  279 (907)
                      ..|.+++||++... ....+..| .++|.|+.|+|++. +||+|+.|+.|+|||..+++...........+|..+.|-|.
T Consensus       197 dsG~lqlWDlRqp~r~~~k~~AH-~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~  274 (839)
T KOG0269|consen  197 DSGYLQLWDLRQPDRCEKKLTAH-NGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA  274 (839)
T ss_pred             CCceEEEeeccCchhHHHHhhcc-cCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence            99999999998554 45555554 89999999999888 99999999999999998765443333235679999999998


Q ss_pred             CC-EEEEEc--CCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEce
Q 002564          280 EP-VLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       280 ~~-~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~  344 (907)
                      .+ .|++++  .|-.|+|||+..+-   .....+..|...++.++|.. |...+.+++.||++..-.+.
T Consensus       275 ~~~hLAtcsmv~dtsV~VWDvrRPY---IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  275 RSYHLATCSMVVDTSVHVWDVRRPY---IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             ccchhhhhhccccceEEEEeecccc---ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence            76 566655  38899999997653   45667789999999999976 66788899999987654443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=7.6e-23  Score=214.21  Aligned_cols=249  Identities=17%  Similarity=0.249  Sum_probs=217.8

Q ss_pred             CeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe---EEEEeCCeeEEE--EcccccceEEEE
Q 002564           26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQVAT--WSRHSAKVNLLL  100 (907)
Q Consensus        26 ~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---I~vw~~~~~~~~--~~~h~~~V~~l~  100 (907)
                      ......+..+..+++||.+..      ..|...+.|+..-...+++++|+.   +-+|..++....  +.+|..+|.++.
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~~------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~   77 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTREF------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT   77 (825)
T ss_pred             ccccceeeeeeccccccchhh------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence            344566666777888886652      246677788887677888999865   668988776444  899999999999


Q ss_pred             ee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEc
Q 002564          101 LF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK  178 (907)
Q Consensus       101 ~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  178 (907)
                      ++  ...|++|+.+|+|++||++....    ++++.++......+.|||-+  .+.+.|+.|+.+.+||++...|.+.++
T Consensus        78 f~~~E~LlaagsasgtiK~wDleeAk~----vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~  151 (825)
T KOG0267|consen   78 FDTSERLLAAGSASGTIKVWDLEEAKI----VRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYK  151 (825)
T ss_pred             cCcchhhhcccccCCceeeeehhhhhh----hhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeec
Confidence            74  67888999999999999999888    77888888888899999999  788999999999999999999999999


Q ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce
Q 002564          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (907)
Q Consensus       179 ~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~  258 (907)
                      +|...|.+++|+|+|+++++|+.|..++|||+..|+.+..|..+ .+.+.++.|+|..- ++++|+.|+++++||+++..
T Consensus       152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe  229 (825)
T KOG0267|consen  152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFE  229 (825)
T ss_pred             CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc-cccccccccCchhh-hhccCCCCceeeeeccceeE
Confidence            99999999999999999999999999999999999999999876 78999999999876 99999999999999999999


Q ss_pred             eeeeeecccccCeEEEEEecCCCEEEEEcCC
Q 002564          259 LQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (907)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d  289 (907)
                      .+.... .....|.+..|.|++..+++|...
T Consensus       230 ~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  230 VISSGK-PETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             EeeccC-CccCCceeeeecCCceeeecCchh
Confidence            998888 668899999999999988887654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=6.3e-23  Score=214.81  Aligned_cols=243  Identities=21%  Similarity=0.371  Sum_probs=216.2

Q ss_pred             EEEEeCCeeEEEEcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEE
Q 002564           77 IAVVKRAHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKV  154 (907)
Q Consensus        77 I~vw~~~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l  154 (907)
                      +++|+..+    +..|...|.++..  .+..+++|+.|..+-+|.+.....    +..+..|...+-++-|+++.  ..|
T Consensus        16 Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~----i~S~~~hespIeSl~f~~~E--~Ll   85 (825)
T KOG0267|consen   16 LRVWDTRE----FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA----ITSLTGHESPIESLTFDTSE--RLL   85 (825)
T ss_pred             cccccchh----hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch----hheeeccCCcceeeecCcch--hhh
Confidence            66777544    4567777877774  678899999999999999876665    55678899999999999999  789


Q ss_pred             EEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEec
Q 002564          155 IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS  234 (907)
Q Consensus       155 ~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~  234 (907)
                      ++|+.+|+|++||++.++.++++.+|...+..+.|+|-+.+.|.|+.|+.+++||.+...+.+.+.. |...|.++.|+|
T Consensus        86 aagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP  164 (825)
T KOG0267|consen   86 AAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSP  164 (825)
T ss_pred             cccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecC
Confidence            9999999999999999999999999999999999999999999999999999999998889999988 588899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCC
Q 002564          235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (907)
Q Consensus       235 dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (907)
                      +|+ +++.|+.|..++|||+..|+....+. .|.+.+.++.|+|..-++++|+.|+++++||+++-    ..+.......
T Consensus       165 ~Gr-~v~~g~ed~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf----e~I~s~~~~~  238 (825)
T KOG0267|consen  165 DGR-WVASGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF----EVISSGKPET  238 (825)
T ss_pred             CCc-eeeccCCcceeeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeecccee----EEeeccCCcc
Confidence            999 99999999999999999999999998 99999999999999999999999999999998753    4555556668


Q ss_pred             CCCeEEEEecCCCEEEEEeCCC
Q 002564          315 APPLCIRFYANGRHILSAGQDR  336 (907)
Q Consensus       315 ~~v~~i~~~~~g~~l~s~~~dg  336 (907)
                      ..|.+.+|+|++..+++|.+..
T Consensus       239 ~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  239 DGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CCceeeeecCCceeeecCchhh
Confidence            8999999999999888886653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=1.3e-20  Score=188.78  Aligned_cols=292  Identities=14%  Similarity=0.165  Sum_probs=231.7

Q ss_pred             EEEEEEeCCeEEEEEcCcceEE--EecCCCCcceEEEEEecCe-EEEEE-c-Ce-EEEEeCCee------EEEEcccccc
Q 002564           28 NFVTVSVGKAFHIYNCAKLNLV--LVGPQLPKKIRALASYRDY-TFAAY-G-NH-IAVVKRAHQ------VATWSRHSAK   95 (907)
Q Consensus        28 ~~~~~~~~~~v~iwd~~~~~~~--~~~~~~~~~I~~la~~~~~-~~~a~-g-~~-I~vw~~~~~------~~~~~~h~~~   95 (907)
                      .+.+++.+..+.+||....+..  +.....+..|.++.|.... ..+|+ + .. |++|...++      +....|....
T Consensus         4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~   83 (673)
T KOG4378|consen    4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAF   83 (673)
T ss_pred             ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHH
Confidence            3667788899999999876544  3333334458999998775 44444 3 33 889975433      2224444332


Q ss_pred             eEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEE
Q 002564           96 VNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY  175 (907)
Q Consensus        96 V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~  175 (907)
                      ..++.-...++++++..+.|+|||+....+    .+.++.|...+..+.+....  .+|++++..|.|.|.++.++....
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~----hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiiih~~~t~~~tt  157 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAKLI----HRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIIIHGTKTKQKTT  157 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHHHH----hhhccCCcceeEEEEecCCc--ceeEEeccCCcEEEEecccCcccc
Confidence            222333578999999999999999996655    66677777666666777777  799999999999999999998888


Q ss_pred             EEcCC-CCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEE
Q 002564          176 EFKGW-GSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN  253 (907)
Q Consensus       176 ~~~~h-~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd  253 (907)
                      .|... +..|.-+.|+|..+ +|.+++.+|.|.+||+....+++.+...|..+...++|+|....++++-+.|..|.+||
T Consensus       158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD  237 (673)
T KOG4378|consen  158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD  237 (673)
T ss_pred             ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence            88754 45667999999876 56678899999999999888999888888999999999999988999999999999999


Q ss_pred             CCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564          254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (907)
Q Consensus       254 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s  331 (907)
                      ....+....+.  ...+...++|.++|.+|+.|...|.|..||++...   ..+..+..|...|++++|-+.. .+++
T Consensus       238 ~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k---~Pv~v~sah~~sVt~vafq~s~-tvlt  309 (673)
T KOG4378|consen  238 IRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK---APVAVRSAHDASVTRVAFQPSP-TVLT  309 (673)
T ss_pred             cccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCC---CCceEeeecccceeEEEeeecc-eeee
Confidence            99888887776  66789999999999999999999999999997654   4567778999999999998865 4443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.87  E-value=1.6e-20  Score=178.85  Aligned_cols=352  Identities=13%  Similarity=0.155  Sum_probs=258.2

Q ss_pred             EEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEE-EEecCCeEEEEEccCCceEEEEe
Q 002564          142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVA-VGCSDGKIHVHNVRYDEELVTFT  220 (907)
Q Consensus       142 ~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la-~g~~dg~I~iwd~~~~~~~~~~~  220 (907)
                      -|.|+|++  +++++++.- ++.|-|..+.+..+.|.. -..|.-+.|..|..+++ ..+.++.|.+|++...+-...+.
T Consensus        13 ~c~fSp~g--~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId   88 (447)
T KOG4497|consen   13 FCSFSPCG--NYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID   88 (447)
T ss_pred             ceeECCCC--Ceeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence            68899999  999999776 788999888776665544 45677888988876554 56778999999999888888888


Q ss_pred             ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (907)
Q Consensus       221 ~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (907)
                      .+ ..++.+++|||||+.+|.+...+-.|.+|.+.+.+....-.  ....+..++|+|||++.+.++.-......++.. 
T Consensus        89 eg-~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~-  164 (447)
T KOG4497|consen   89 EG-QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS-  164 (447)
T ss_pred             cC-CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeecccHHHHHHHHh-
Confidence            77 67899999999998788898899999999999887665443  344669999999999988887532111111110 


Q ss_pred             CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEee
Q 002564          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (907)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  380 (907)
                      ...+.+++.+.-.+-..+.+.|+|||..|+.         ||..-..                                 
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Ley---------------------------------  202 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEY---------------------------------  202 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhh---------------------------------
Confidence            1123455555566677889999999987764         4421100                                 


Q ss_pred             ecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccce
Q 002564          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG  460 (907)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~  460 (907)
                                          .++.|.                -.-.+..++++|+++++++|+.|+.+++.|--+-+...
T Consensus       203 --------------------kv~aYe----------------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~  246 (447)
T KOG4497|consen  203 --------------------KVYAYE----------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG  246 (447)
T ss_pred             --------------------eeeeee----------------eccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence                                000000                01568889999999999999999999887654433322


Q ss_pred             eeeccccc----------------------------------------------------------cccCcCCcEEEEEE
Q 002564          461 SYLDMSER----------------------------------------------------------SNYAHNGEVVGVAC  482 (907)
Q Consensus       461 ~~~~~~~~----------------------------------------------------------~~~~h~~~v~~l~~  482 (907)
                      .|......                                                          ........+.-++|
T Consensus       247 eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~laf  326 (447)
T KOG4497|consen  247 EFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAF  326 (447)
T ss_pred             hhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeee
Confidence            22111000                                                          11122345778999


Q ss_pred             cCCCCEEEEEec--CCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCe
Q 002564          483 DSTNTLMISAGY--HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI  560 (907)
Q Consensus       483 s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I  560 (907)
                      ++|..+++|-..  -+.+.+||+...++...+....+|....|+|....|+++.....+++|.......+.. .+..-.|
T Consensus       327 s~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i  405 (447)
T KOG4497|consen  327 SCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNI  405 (447)
T ss_pred             cCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCcee
Confidence            999999888653  3679999999988888887789999999999988888888888899998876555543 3334679


Q ss_pred             eeEEECCCCcEEEEEeCCCc
Q 002564          561 TDFCFSEDGKWLLSSGMDGS  580 (907)
Q Consensus       561 ~~l~fspdg~~l~s~s~Dg~  580 (907)
                      .+++|..+|..++-.+.|..
T Consensus       406 ~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  406 QKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             eeEEecCCCcEEEEEcCCce
Confidence            99999999999999998864

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=2.8e-20  Score=177.61  Aligned_cols=333  Identities=15%  Similarity=0.209  Sum_probs=228.4

Q ss_pred             EcccccceEEEEee-------CCEEEEEecCCcEEEEecCCCCccccceeeEe--cCCCcccEEEEcCCCC--CCEEEEE
Q 002564           89 WSRHSAKVNLLLLF-------GEHILSIDIDGNMFIWAFKGIEENLAPVGHVK--LDDKFTPTCIMHPDTY--LNKVIVG  157 (907)
Q Consensus        89 ~~~h~~~V~~l~~~-------g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~--~~~l~~~  157 (907)
                      ...|..+|..++|+       -+-+++++ .+.+.+|+.....-.. .+....  -+.....+|++.-+.+  ..++|+|
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir-~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR-LLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee-eeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            45677777777763       23344444 5667777765543200 011111  1233445677665543  2578889


Q ss_pred             ecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEEccCCceEEEEe--ecCCCCEEEEEEec
Q 002564          158 SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAFSS  234 (907)
Q Consensus       158 s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~-~~la~g~~dg~I~iwd~~~~~~~~~~~--~~~~~~v~~l~fs~  234 (907)
                      +.-|.|+|.|+.++++...+.+|+..|+.+.+.|+. ++|++++.|..|++||++++.++..|-  .+|.+.|.++.|++
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~  191 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL  191 (385)
T ss_pred             cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence            999999999999999999999999999999999975 689999999999999999999998887  35688999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCC
Q 002564          235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (907)
Q Consensus       235 dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (907)
                      +|. .+++++.|.+|++|++...+....+.       .+..|+|++...-            +.+.........+..-|.
T Consensus       192 ~gd-~i~ScGmDhslk~W~l~~~~f~~~lE-------~s~~~~~~~t~~p------------fpt~~~~fp~fst~diHr  251 (385)
T KOG1034|consen  192 DGD-RIASCGMDHSLKLWRLNVKEFKNKLE-------LSITYSPNKTTRP------------FPTPKTHFPDFSTTDIHR  251 (385)
T ss_pred             CCC-eeeccCCcceEEEEecChhHHhhhhh-------hhcccCCCCccCc------------CCcccccccccccccccc
Confidence            999 89999999999999998766554444       2255666653211            111111111122445799


Q ss_pred             CCCeEEEEecCCCEEEEEeCCCCEEEEEceecccc-eeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceE
Q 002564          315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS-RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (907)
Q Consensus       315 ~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  393 (907)
                      ..|.|++|..  .++++-+.++.|..|..-.-... ....                    +|            +.... 
T Consensus       252 nyVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vk--------------------p~------------es~~T-  296 (385)
T KOG1034|consen  252 NYVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVK--------------------PP------------ESATT-  296 (385)
T ss_pred             chHHHHHHHh--hheeecccCceEEEEecchhhhhhhccC--------------------CC------------cccee-
Confidence            9999999984  69999999999999976211110 0000                    00            00000 


Q ss_pred             EEeeCCceEEEEEeeeceecceeeecCCCCCCc--eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccccccc
Q 002564          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA--VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY  471 (907)
Q Consensus       394 ~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  471 (907)
                             .+.-+++               ....  ....++.+.++.|+.|...|.|++||+........-..    .-.
T Consensus       297 -------i~~~~~~---------------~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl----~~s  350 (385)
T KOG1034|consen  297 -------ILGEFDY---------------PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL----THS  350 (385)
T ss_pred             -------eeeEecc---------------CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE----Eec
Confidence                   0111111               1122  33457788899999999999999999988766321110    001


Q ss_pred             CcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       472 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  504 (907)
                      .....|...+|+.|+.+|+....|++|.-||.-
T Consensus       351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            234579999999999999999999999999853

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.86  E-value=8.5e-20  Score=173.75  Aligned_cols=285  Identities=17%  Similarity=0.238  Sum_probs=212.2

Q ss_pred             CeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCc----c-----eeEeccCCCCCCeEEEEe-------cCCCEEEEEe
Q 002564          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP----R-----LLRFRSGHSAPPLCIRFY-------ANGRHILSAG  333 (907)
Q Consensus       270 ~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~----~-----~~~~~~~h~~~v~~i~~~-------~~g~~l~s~~  333 (907)
                      -...+.|+|||..|++-+.|+.+.+|++.......    .     ...........|...+|.       |+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            45678999999999999999999999875432110    0     111111233456777776       5678899999


Q ss_pred             CCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceec
Q 002564          334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG  413 (907)
Q Consensus       334 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~  413 (907)
                      ++.-|++||..+++....+..-....                                                      
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~d------------------------------------------------------  156 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQD------------------------------------------------------  156 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHH------------------------------------------------------
Confidence            99999999998887655543211000                                                      


Q ss_pred             ceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC-CCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEE
Q 002564          414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMIS  491 (907)
Q Consensus       414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s  491 (907)
                               .-....+++|+|||..|++|. +..|++||+ +.|..-..+.... ....+..+-|.+++|+|.. +.++.
T Consensus       157 ---------e~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~-~~k~gq~giisc~a~sP~~~~~~a~  225 (406)
T KOG2919|consen  157 ---------EYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT-KGKFGQKGIISCFAFSPMDSKTLAV  225 (406)
T ss_pred             ---------hhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh-cccccccceeeeeeccCCCCcceee
Confidence                     014567899999999999885 568999999 5555443332110 0112447789999999965 58999


Q ss_pred             EecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeC-CCeEEEEEccc-ceeEEEeecCCC-CeeeE--EE
Q 002564          492 AGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD-DLVIRLFDVVA-LRMVRKFEGHTD-RITDF--CF  565 (907)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~~-~~~~~~~~~h~~-~I~~l--~f  565 (907)
                      ++...++-|+.-..+.++..+..+ +.|+.++|+++|+.|.+|.. |-.|..||++. +.++..+..|.+ .=..|  ..
T Consensus       226 gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl  305 (406)
T KOG2919|consen  226 GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDL  305 (406)
T ss_pred             ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEec
Confidence            999999999998888888777544 89999999999999999876 67899999975 456777877765 22334  45


Q ss_pred             CCCCcEEEEEeCCCcEEEEEcCC-CceeeEeeeCCc-eEEEEECCCCceEEEEEec
Q 002564          566 SEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVS-ITALSLSPNMDVLATAHVD  619 (907)
Q Consensus       566 spdg~~l~s~s~Dg~I~vwd~~~-~~~~~~~~~~~~-v~~l~~spdg~~lat~~~d  619 (907)
                      .|+|++|++|+.||.|++||+++ |..+..+..++. +..++++|--..+||++..
T Consensus       306 d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  306 DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            78999999999999999999998 776766665554 9999999998888888754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=3.8e-20  Score=179.79  Aligned_cols=249  Identities=20%  Similarity=0.308  Sum_probs=191.7

Q ss_pred             EcccccceEEEEe----eCCEEEEEecCCcEEEEecCCCC------------ccccceeeEecCCCcccEEEEcCCCCCC
Q 002564           89 WSRHSAKVNLLLL----FGEHILSIDIDGNMFIWAFKGIE------------ENLAPVGHVKLDDKFTPTCIMHPDTYLN  152 (907)
Q Consensus        89 ~~~h~~~V~~l~~----~g~~l~s~~~dg~v~vWd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~  152 (907)
                      ..+|.+.+..+..    +....++-+..|.|.||++....            ....|+.++..|........|+|..+ .
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~-g  225 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT-G  225 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-c
Confidence            4567777777763    34567777889999999985421            12356778888888888899999665 6


Q ss_pred             EEEEEecCCcEEEEecCCCeE---EEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEEccCCc-eEEEEeecCCCCE
Q 002564          153 KVIVGSQEGSLQLWNISTKKK---LYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAV  227 (907)
Q Consensus       153 ~l~~~s~dg~i~iwd~~~~~~---~~~~~~h~~~I~~l~~sp~~-~~la~g~~dg~I~iwd~~~~~-~~~~~~~~~~~~v  227 (907)
                      .+++|..-+.|++|...+|.=   ...|.+|+..|-.++|||.. .++|+|+.||+|+|||++.+. ....+...|.+.|
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV  305 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV  305 (440)
T ss_pred             ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence            789998888999999988653   23467899999999999965 589999999999999999883 2222224457899


Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEECCC---ceeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCC-
Q 002564          228 TALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDG-  302 (907)
Q Consensus       228 ~~l~fs~dg~~~l~sg~~dg~I~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~-  302 (907)
                      ..++|+.+-. +||+|+.||+++|||++.   ++++..+. -|..+|+++.|+|.. ..++++|.|++|.+||+..... 
T Consensus       306 NVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~  383 (440)
T KOG0302|consen  306 NVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE  383 (440)
T ss_pred             eeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence            9999999888 999999999999999975   46778888 899999999999954 5788889999999999865422 


Q ss_pred             --------------CcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEE
Q 002564          303 --------------DPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFS  342 (907)
Q Consensus       303 --------------~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd  342 (907)
                                    .++++. ...-...+..+.|++ ...++++.+.|| +.+|.
T Consensus       384 ee~~~~a~~~L~dlPpQLLF-VHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  384 EEIDQEAAEGLQDLPPQLLF-VHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             hhhccccccchhcCCceeEE-EecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence                          112222 112245678889998 445888888888 55554

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=4.5e-20  Score=183.35  Aligned_cols=241  Identities=17%  Similarity=0.319  Sum_probs=184.2

Q ss_pred             CCEEEEEecCCcEEEEecCCCCccccc--ee---------------eEecCCCcccEEEEcCCCCCCEEEEEecCCcEEE
Q 002564          103 GEHILSIDIDGNMFIWAFKGIEENLAP--VG---------------HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL  165 (907)
Q Consensus       103 g~~l~s~~~dg~v~vWd~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~i  165 (907)
                      |+++|.|..|-.|.|||++-.....+.  +.               .-..|...+..+.+..... +.|++||.|.+|.+
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~-nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR-NVLASGSADKTVKL  270 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc-eeEEecCCCceEEE
Confidence            789999999999999998754332111  00               0012232333333433332 78999999999999


Q ss_pred             EecCCCeEEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEEccCC-ceEEEEeecCCCCEEEEEEecCCCCEEEEE
Q 002564          166 WNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYD-EELVTFTHSMRGAVTALAFSSDGQPLLASG  243 (907)
Q Consensus       166 wd~~~~~~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~~~-~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg  243 (907)
                      ||+.+|++..++..|+..|.++.|+|. ..+|++|+.|++|.+.|.+.. ..-..+..  .+.|-.++|.|.....++++
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~  348 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDPHSENSFFVS  348 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEecCCCceeEEEe
Confidence            999999999999999999999999995 579999999999999999842 22223333  47899999999998888999


Q ss_pred             eCCCcEEEEECCCc-eeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEE
Q 002564          244 ASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR  321 (907)
Q Consensus       244 ~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~  321 (907)
                      ..||+|+-+|++.. +++.+++ +|.++|.++++++.-+ ++++++.|+.|++|+++....  +.+....-.-+...|.+
T Consensus       349 tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~--~~v~~~~~~~~rl~c~~  425 (463)
T KOG0270|consen  349 TDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP--KSVKEHSFKLGRLHCFA  425 (463)
T ss_pred             cCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC--cccccccccccceeecc
Confidence            99999999999876 8999998 9999999999998654 788999999999999986654  23322222233467777


Q ss_pred             EecCC-CEEEEEeCCCCEEEEEceecccc
Q 002564          322 FYANG-RHILSAGQDRAFRLFSVIQDQQS  349 (907)
Q Consensus       322 ~~~~g-~~l~s~~~dg~i~iwd~~~~~~~  349 (907)
                      +.|+- -.++.|+..+.+++||+.+....
T Consensus       426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  426 LDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cCCCcceEEEecCccceEEEeecccChhH
Confidence            88854 45677888888999999776543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=2.6e-20  Score=177.78  Aligned_cols=323  Identities=17%  Similarity=0.231  Sum_probs=220.5

Q ss_pred             cCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEEccCCc---eEEEEee-cCCCCEEEEEEecC---CCCEEEEEeC
Q 002564          178 KGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDE---ELVTFTH-SMRGAVTALAFSSD---GQPLLASGAS  245 (907)
Q Consensus       178 ~~h~~~I~~l~~sp-----~~~~la~g~~dg~I~iwd~~~~~---~~~~~~~-~~~~~v~~l~fs~d---g~~~l~sg~~  245 (907)
                      ..|+.+|..++|++     +.+.+|+.+. ..+.+|+....-   .++.+.. .+......++|+-|   +.+++|+|+.
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~  113 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY  113 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence            46789999999985     2346666665 578999887544   2333332 24667888888764   4568999999


Q ss_pred             CCcEEEEECCCceeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec
Q 002564          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA  324 (907)
Q Consensus       246 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~  324 (907)
                      -|.|+|.|+.++++...+. +|...|+.+.+.|+. +++++++.|.+|++|++.+.... .+..-..||.+.|.++.|++
T Consensus       114 ~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv-~VfGG~egHrdeVLSvD~~~  191 (385)
T KOG1034|consen  114 LGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV-AVFGGVEGHRDEVLSVDFSL  191 (385)
T ss_pred             eeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE-EEecccccccCcEEEEEEcC
Confidence            9999999999999999999 999999999999976 58899999999999999876321 12233468999999999999


Q ss_pred             CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEE
Q 002564          325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  404 (907)
Q Consensus       325 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~  404 (907)
                      +|.+++++|.|.+|++|++...+....+...      ..........++|..                            
T Consensus       192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s------~~~~~~~t~~pfpt~----------------------------  237 (385)
T KOG1034|consen  192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELS------ITYSPNKTTRPFPTP----------------------------  237 (385)
T ss_pred             CCCeeeccCCcceEEEEecChhHHhhhhhhh------cccCCCCccCcCCcc----------------------------
Confidence            9999999999999999998754332211110      000000000000000                            


Q ss_pred             EEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC-CCCccceeeeccccc-----cccCcCCcEE
Q 002564          405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSER-----SNYAHNGEVV  478 (907)
Q Consensus       405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~-~~~~~~~~~~~~~~~-----~~~~h~~~v~  478 (907)
                            ......+...+-|...|.|+.|-  |+++++-+-++.|..|.. +-++...........     ...-....|.
T Consensus       238 ------~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW  309 (385)
T KOG1034|consen  238 ------KTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW  309 (385)
T ss_pred             ------ccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE
Confidence                  00001111122344556666554  588888888899999987 222221111100000     0011223344


Q ss_pred             E--EEEcCCCCEEEEEecCCeEEEEECCCCceee--eeec---CcceeEEEEeeCCCEEEEEeCCCeEEEEEcc
Q 002564          479 G--VACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (907)
Q Consensus       479 ~--l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~---~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~  545 (907)
                      -  .+|++-++.|+.|...|.|.+||++..++..  ++.+   ...|...+|+.|+.+|+..++|++|.-||..
T Consensus       310 firf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  310 FIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            4  4567778999999999999999999876632  2222   3789999999999999999999999999864

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.85  E-value=9.2e-20  Score=173.75  Aligned_cols=342  Identities=13%  Similarity=0.170  Sum_probs=244.8

Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeec
Q 002564          186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE  265 (907)
Q Consensus       186 ~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~  265 (907)
                      -+.|||+|+++|+++.- .+.|-|..+-+..+.|..-  ..|..+.|..|..++|.....++.|.+|++...+-...+. 
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl--dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId-   88 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL--DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID-   88 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH--HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-
Confidence            46899999999999875 7888888877765555443  5788999999998788888899999999999999888888 


Q ss_pred             ccccCeEEEEEecCCCEE-EEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564          266 AHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (907)
                      ....++.+++|+|||+.+ .+...|-.|.+|.+.+..+  ..+   .-....+..++|+|||++.+.+++-...-..++.
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--~~~---~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~  163 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--YLL---PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS  163 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--EEe---cccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence            667789999999999655 5556689999999887643  122   2233456899999999998887654211111110


Q ss_pred             ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCC
Q 002564          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (907)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~  424 (907)
                      ..+                                        +                         -..+....-..
T Consensus       164 ~c~----------------------------------------~-------------------------W~ll~~f~~dT  178 (447)
T KOG4497|consen  164 SCK----------------------------------------A-------------------------WILLKEFKLDT  178 (447)
T ss_pred             hhH----------------------------------------H-------------------------HHHHHhcCCCc
Confidence            000                                        0                         00011111122


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  504 (907)
                      -..+.+.|+|||+.+++=.+-=.-.+|         .         ....-.+..++|+|.+++|+.|+.|+.+|+.+--
T Consensus       179 ~DltgieWsPdg~~laVwd~~Leykv~---------a---------Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  179 IDLTGIEWSPDGNWLAVWDNVLEYKVY---------A---------YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             ccccCceECCCCcEEEEecchhhheee---------e---------eeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence            456788999999998864321111111         1         1233568889999999999999999999886422


Q ss_pred             CCcee------------------------------------------------------------eeee-------cCcc
Q 002564          505 GRDLK------------------------------------------------------------SRWE-------VGCS  517 (907)
Q Consensus       505 ~~~~~------------------------------------------------------------~~~~-------~~~~  517 (907)
                      +-+..                                                            ..++       ....
T Consensus       241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g  320 (447)
T KOG4497|consen  241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG  320 (447)
T ss_pred             eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence            11100                                                            0000       0145


Q ss_pred             eeEEEEeeCCCEEEEEeCC--CeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEe
Q 002564          518 LVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI  595 (907)
Q Consensus       518 i~~~~~s~~~~~la~~~~d--g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~  595 (907)
                      +..++|++|+.++|+-.+.  +.+.+||++..++...+. ...+|....|.|....|+.+.....+.+|......++..-
T Consensus       321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP  399 (447)
T KOG4497|consen  321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP  399 (447)
T ss_pred             cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC
Confidence            6789999999999988654  589999999887766554 5578999999998888887777778999997665555554


Q ss_pred             eeCCceEEEEECCCCceEEEEEecC
Q 002564          596 HVDVSITALSLSPNMDVLATAHVDQ  620 (907)
Q Consensus       596 ~~~~~v~~l~~spdg~~lat~~~d~  620 (907)
                      ...-.|..+.|.-+|++++..+.|.
T Consensus       400 ~~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  400 KKGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             CCCceeeeEEecCCCcEEEEEcCCc
Confidence            4445699999999999999999987

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=7.7e-20  Score=175.73  Aligned_cols=287  Identities=19%  Similarity=0.324  Sum_probs=208.3

Q ss_pred             CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEEccCCceEEEEe--ecCCCCE
Q 002564          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAV  227 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp--~~~~la~g~~dg~I~iwd~~~~~~~~~~~--~~~~~~v  227 (907)
                      +.++++..+|.|++||..+++.+..|+++...++.+.|..  ....+.+|+.||.|++||+++......+.  ++...+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5699999999999999999999999999999999999977  46789999999999999999877655554  3323467


Q ss_pred             EEEEEecCCCCEEEEEe----CCCcEEEEECCCcee-eeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCC
Q 002564          228 TALAFSSDGQPLLASGA----SSGVISIWNLEKRRL-QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTD  301 (907)
Q Consensus       228 ~~l~fs~dg~~~l~sg~----~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~  301 (907)
                      .+++....++ ++++|.    .+-.|.+||++..+. +..+...|...|+++.|+|.. ++|++|+.||-|.++|+....
T Consensus       121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            7877776666 788876    466899999998866 788888999999999999965 589999999999999988765


Q ss_pred             CCcceeEeccCCCCCCeEEEEecCC-CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEee
Q 002564          302 GDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD  380 (907)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  380 (907)
                      ..-.++... .|...|.++.|..++ +.|.+-+..++..+|++..+.....+..+......                   
T Consensus       200 EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d-------------------  259 (376)
T KOG1188|consen  200 EEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD-------------------  259 (376)
T ss_pred             chhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh-------------------
Confidence            544444444 677889999999876 56888899999999999888755544432111100                   


Q ss_pred             ecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEE-EEEeCCCcEEEEeCC---CC
Q 002564          381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQ---SG  456 (907)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~i~d~~---~~  456 (907)
                         .+..+..                                  ..+.......++... +.|+..|...++-+.   ++
T Consensus       260 ---~r~~~~~----------------------------------dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~  302 (376)
T KOG1188|consen  260 ---LRKEDNC----------------------------------DYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSG  302 (376)
T ss_pred             ---HHhhhhh----------------------------------hheeecccCCCcceEEEeccccCceeEEEeeecccc
Confidence               0000000                                  001111111122333 333334555554433   22


Q ss_pred             c---cceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564          457 I---SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (907)
Q Consensus       457 ~---~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  503 (907)
                      .   ....+.       .+|..-|+++.|...+.++.|||.||.+.+|..
T Consensus       303 ~~~~~~a~l~-------g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  303 SLLTEPAILQ-------GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cccCcccccc-------CCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            2   222232       357788999999999999999999999999985

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=1.7e-18  Score=175.52  Aligned_cols=437  Identities=18%  Similarity=0.201  Sum_probs=272.0

Q ss_pred             cccccceEEEEeeC-CEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCC-------CCCCEEEEEecCC
Q 002564           90 SRHSAKVNLLLLFG-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD-------TYLNKVIVGSQEG  161 (907)
Q Consensus        90 ~~h~~~V~~l~~~g-~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~l~~~s~dg  161 (907)
                      ..|...|.++.+.+ .-++.++.|..+.+|.-.+.+.    ...+..+..++.+..+ +.       +....+++++.||
T Consensus        11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s----~~~~~~p~df~pt~~h-~~~rs~~~g~~~d~~~i~s~DG   85 (737)
T KOG1524|consen   11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS----VEVAKLPDDFVPTDMH-LGGRSSGGGKGSDTLLICSNDG   85 (737)
T ss_pred             cccceeEEeecccccceEEEeccCceEEEeecccchh----hhhhhCCcccCCcccc-ccccccCCCCCcceEEEEcCCc
Confidence            35666677777643 3455555577766665444333    2223333333333321 21       1235789999999


Q ss_pred             cEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (907)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~  241 (907)
                      .+.+.+ +.++.-.....|.+.|.|-.|+|+|.-|+++++||.|++|. ++|-...++.+. ..+|+|++|.|+...++.
T Consensus        86 kf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~-~~~v~c~~W~p~S~~vl~  162 (737)
T KOG1524|consen   86 RFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQN-EESIRCARWAPNSNSIVF  162 (737)
T ss_pred             eEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhc-CceeEEEEECCCCCceEE
Confidence            999998 68888889999999999999999999999999999999998 445544444443 578999999999986666


Q ss_pred             EEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEE
Q 002564          242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR  321 (907)
Q Consensus       242 sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~  321 (907)
                      +.+  +.+.|=.+.....+-..+ +|++-|.++.|++..+++++||.|-..++||-..     +.+.....|..+|++++
T Consensus       163 c~g--~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-----~~Lf~S~~~ey~ITSva  234 (737)
T KOG1524|consen  163 CQG--GHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-----ANLFTSAAEEYAITSVA  234 (737)
T ss_pred             ecC--CeEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecccC-----cccccCChhccceeeee
Confidence            554  678887777776677777 9999999999999999999999999999996432     45666678999999999


Q ss_pred             EecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCce
Q 002564          322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ  401 (907)
Q Consensus       322 ~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  401 (907)
                      |.|+ +.++.++.+ ++|+=                                                            
T Consensus       235 ~npd-~~~~v~S~n-t~R~~------------------------------------------------------------  252 (737)
T KOG1524|consen  235 FNPE-KDYLLWSYN-TARFS------------------------------------------------------------  252 (737)
T ss_pred             eccc-cceeeeeee-eeeec------------------------------------------------------------
Confidence            9999 555555432 22210                                                            


Q ss_pred             EEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----cceeeeccccc--------
Q 002564          402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-----SRGSYLDMSER--------  468 (907)
Q Consensus       402 v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~-----~~~~~~~~~~~--------  468 (907)
                                         ....+.|..++||+||..+++|+..|.+.+-..-..+     ...........        
T Consensus       253 -------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~  313 (737)
T KOG1524|consen  253 -------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATG  313 (737)
T ss_pred             -------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhh
Confidence                               1123789999999999999999999987653221111     00000000000        


Q ss_pred             --cccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeec-------------------CcceeE------E
Q 002564          469 --SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-------------------GCSLVK------I  521 (907)
Q Consensus       469 --~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~i~~------~  521 (907)
                        ..-.....|...+..-  ..|+++.. ..+++|.-........++.                   ...|+-      .
T Consensus       314 v~d~LE~p~rv~k~sL~Y--~hLvvaTs-~qvyiys~knwntpiiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~  390 (737)
T KOG1524|consen  314 VQDILEFPQRVVKFSLGY--GHLVVATS-LQVYIYSEKNWNTPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRL  390 (737)
T ss_pred             HHHHhhCccceeeeeece--eEEEEEec-cEEEEEecCCccCcEEEeccccchhHhhhhhhheEEecCcEEEEEEecCce
Confidence              0011223344444322  23333332 3455554332211111110                   011110      0


Q ss_pred             EEee-----------------CCCEEEEE--eCCCeEEEEEc-ccceeEE--EeecCCCCeeeEEECC----CCcEEEEE
Q 002564          522 VYHR-----------------VNGLLATV--ADDLVIRLFDV-VALRMVR--KFEGHTDRITDFCFSE----DGKWLLSS  575 (907)
Q Consensus       522 ~~s~-----------------~~~~la~~--~~dg~I~v~d~-~~~~~~~--~~~~h~~~I~~l~fsp----dg~~l~s~  575 (907)
                      .++|                 ....|+.-  .+...+++||. .+++...  .+-.|...|..++...    +.+.++.-
T Consensus       391 ~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFi  470 (737)
T KOG1524|consen  391 HLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFI  470 (737)
T ss_pred             ecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEE
Confidence            1111                 11223322  22335667776 5555432  1223666677776654    45677777


Q ss_pred             eCCCcEEEEEcCC-CceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564          576 GMDGSLRIWDVIL-ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       576 s~Dg~I~vwd~~~-~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (907)
                      ...+.+.|=.+++ |+.-..++...-|..++|+...+.| .+-.|+ .+.+|-.
T Consensus       471 Dknrdl~ItsvKrfgkee~I~KiGTmVhtLawndttNiL-cglqDt-~fsVWy~  522 (737)
T KOG1524|consen  471 DKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDTTNIL-CGLQDT-CFSVWYY  522 (737)
T ss_pred             ecCCcEEEEeehhcCchhhhhhhhhhhhhhhhcccccee-eeeccc-eEEEEEc
Confidence            7777777776654 3333444555668899998776655 455566 3899964

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=8.5e-19  Score=172.41  Aligned_cols=328  Identities=19%  Similarity=0.238  Sum_probs=213.3

Q ss_pred             CCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCCce---------EEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEE
Q 002564          181 GSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEE---------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (907)
Q Consensus       181 ~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~~~---------~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~  250 (907)
                      ..+|..+.|.++.. .+|+|+.|..|++|-+..+..         +..+ ..|...|+++.|+|+|. +||+|+.+|.|.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~ge-lLASg~D~g~v~   90 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPDGE-LLASGGDGGEVF   90 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCCcC-eeeecCCCceEE
Confidence            56888999988776 999999999999998864321         2223 33578999999999999 999999999999


Q ss_pred             EEECC--------C--------ceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCC
Q 002564          251 IWNLE--------K--------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (907)
Q Consensus       251 iwd~~--------~--------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (907)
                      +|-..        +        ......+. +|...|..++|+|++.++++++.|+++++||+..+    .+...+.+|.
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G----~l~~~~~dh~  165 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG----QLLAILDDHE  165 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCceeeeeeccceEEEEEeccc----eeEeeccccc
Confidence            99765        2        12333444 89999999999999999999999999999999876    6788889999


Q ss_pred             CCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEE
Q 002564          315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  394 (907)
Q Consensus       315 ~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  394 (907)
                      ..+..++|.|-++++++-+.|+..+.+++...+............                      .          ..
T Consensus       166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~----------------------~----------~~  213 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA----------------------K----------AF  213 (434)
T ss_pred             cccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeee----------------------c----------cc
Confidence            999999999999999999999988888776554433322100000                      0          00


Q ss_pred             EeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC----CCcE-----EEEeCCCCccceeeecc
Q 002564          395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----GGWI-----ERFNLQSGISRGSYLDM  465 (907)
Q Consensus       395 ~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----dg~i-----~i~d~~~~~~~~~~~~~  465 (907)
                      .+......+++.-.             .-+.....++|+|||..+++...    .|.+     ++|+-..-..       
T Consensus       214 ~~~e~~s~rLfhDe-------------TlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r-------  273 (434)
T KOG1009|consen  214 NEREGKSTRLFHDE-------------TLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR-------  273 (434)
T ss_pred             CCCCcceeeeeecC-------------chhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC-------
Confidence            00011111111111             11244567788899988887532    1111     1222110000       


Q ss_pred             ccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcc
Q 002564          466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV  545 (907)
Q Consensus       466 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~  545 (907)
                      +......-..++..+.++|-              .|.+.....       .+  .+.--|-+-.+|+++. ..|+|||.+
T Consensus       274 P~~~lp~~~k~~lavr~~pV--------------y~elrp~~~-------~~--~~~~lpyrlvfaiAt~-~svyvydtq  329 (434)
T KOG1009|consen  274 PAARLPSPKKPALAVRFSPV--------------YYELRPLSS-------EK--FLFVLPYRLVFAIATK-NSVYVYDTQ  329 (434)
T ss_pred             ceeecCCCCcceEEEEeeee--------------EEEeccccc-------cc--cccccccceEEEEeec-ceEEEeccc
Confidence            00000112222222333221              111110000       00  0111233445556654 589999999


Q ss_pred             cceeEEEeec-CCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCce
Q 002564          546 ALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ  591 (907)
Q Consensus       546 ~~~~~~~~~~-h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~  591 (907)
                      +..++..... |-..|++++|++||..|+..|.||...+--++..++
T Consensus       330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            9887776653 889999999999999999999999877766655443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=2.7e-19  Score=173.97  Aligned_cols=208  Identities=19%  Similarity=0.288  Sum_probs=167.3

Q ss_pred             cccEEEEcCCCCCCEEEEEecCCcEEEEecCC----------------CeEEEEEcCCCCCEEEEEEcCCC-CEEEEEec
Q 002564          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST----------------KKKLYEFKGWGSSISSCVSSPAL-DVVAVGCS  201 (907)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~----------------~~~~~~~~~h~~~I~~l~~sp~~-~~la~g~~  201 (907)
                      .+......+-+...+.++-+..|.|+|||+..                .++++++.+|...=..++|||-. ..|++|.-
T Consensus       153 ~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc  232 (440)
T KOG0302|consen  153 GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC  232 (440)
T ss_pred             ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCcc
Confidence            33344444444224566778899999999843                35788999999999999999932 35788877


Q ss_pred             CCeEEEEEccCCceEE---EEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeEEEEEe
Q 002564          202 DGKIHVHNVRYDEELV---TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFF  277 (907)
Q Consensus       202 dg~I~iwd~~~~~~~~---~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~  277 (907)
                      -+.|++|...++.-..   .|.. |...|..++|||....++++|+.||+|+|||++.+ +.......+|.+.|+.+.|+
T Consensus       233 ~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWn  311 (440)
T KOG0302|consen  233 VKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWN  311 (440)
T ss_pred             ccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEcc
Confidence            8899999998875332   2334 58899999999998889999999999999999988 22222224899999999999


Q ss_pred             cCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceeccc
Q 002564          278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQ  348 (907)
Q Consensus       278 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~  348 (907)
                      .+.++|++|+.||+++|||++.-... ..+..+.-|..+|+++.|+| +...|++++.|..|.+||+....-
T Consensus       312 r~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  312 RREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             CCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            99999999999999999999876544 56778889999999999999 667888999999999999875543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.2e-19  Score=180.27  Aligned_cols=284  Identities=20%  Similarity=0.276  Sum_probs=193.3

Q ss_pred             EEEEcCCCCCCEEEEEecCC-----cEEEEecCCCeEEEE---EcCCCCCEEEEEEcC-------CCCEEEEEecCCeEE
Q 002564          142 TCIMHPDTYLNKVIVGSQEG-----SLQLWNISTKKKLYE---FKGWGSSISSCVSSP-------ALDVVAVGCSDGKIH  206 (907)
Q Consensus       142 ~~~~~p~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~---~~~h~~~I~~l~~sp-------~~~~la~g~~dg~I~  206 (907)
                      -..+-|+.  +.|+++-.+.     .+++||-.. ..++.   +-- ...-.|++|..       .|+++|+|+.|..|.
T Consensus       130 e~~V~psD--nlIl~ar~eddvs~LEvYVyn~~e-~nlYvHHD~il-pafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie  205 (463)
T KOG0270|consen  130 EEQVKPSD--NLILCARNEDDVSYLEVYVYNEEE-ENLYVHHDFIL-PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE  205 (463)
T ss_pred             cceeccCC--cEEEEeeccCCceEEEEEEEcCCC-cceeEecceec-cCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence            34556766  6677764433     245555322 12211   110 23335555532       367999999999999


Q ss_pred             EEEccCCce---EEEE-----------------eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecc
Q 002564          207 VHNVRYDEE---LVTF-----------------THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA  266 (907)
Q Consensus       207 iwd~~~~~~---~~~~-----------------~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~  266 (907)
                      |||+.--..   ...+                 ..+|...|.+++|+..-+.+||+|+.|.+|++||+.++++..++. .
T Consensus       206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~  284 (463)
T KOG0270|consen  206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-H  284 (463)
T ss_pred             EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-h
Confidence            999862110   0000                 124567788999999888899999999999999999999999998 8


Q ss_pred             cccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEce
Q 002564          267 HDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       267 h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~  344 (907)
                      |...|.++.|+|.. ..|++|+.|++|.+.|.+.........    ...+.|-.++|.| ....++++..||+++-+|++
T Consensus       285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w----k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R  360 (463)
T KOG0270|consen  285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW----KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR  360 (463)
T ss_pred             cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE----EeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence            99999999999965 489999999999999887533222222    1234555566655 23344444455555555543


Q ss_pred             ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCC
Q 002564          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (907)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~  424 (907)
                      ..                                                                              
T Consensus       361 ~~------------------------------------------------------------------------------  362 (463)
T KOG0270|consen  361 NP------------------------------------------------------------------------------  362 (463)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            22                                                                              


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEEC
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDF  503 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~  503 (907)
                                                     ++++.+.        .+|.++|.++++++.. .++++++.|+.+++|++
T Consensus       363 -------------------------------~~~vwt~--------~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~  403 (463)
T KOG0270|consen  363 -------------------------------GKPVWTL--------KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF  403 (463)
T ss_pred             -------------------------------CCceeEE--------EeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence                                           1333333        3899999999998865 57889999999999999


Q ss_pred             CCCceeeeeecC---cceeEEEEeeCC-CEEEEEeCCCeEEEEEcccceeEE
Q 002564          504 KGRDLKSRWEVG---CSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRMVR  551 (907)
Q Consensus       504 ~~~~~~~~~~~~---~~i~~~~~s~~~-~~la~~~~dg~I~v~d~~~~~~~~  551 (907)
                      ..........+.   +...|+++.|+- ..+|+|+..+.++|||+.+...++
T Consensus       404 ~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  404 DVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            865543333322   456677777765 477888888899999998876554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=1.1e-19  Score=168.15  Aligned_cols=308  Identities=16%  Similarity=0.226  Sum_probs=214.2

Q ss_pred             eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEE
Q 002564          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (907)
Q Consensus       172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i  251 (907)
                      .+.+.+++|.+.|+++.|..+++ |.+|..-|.|++|++.+.+.+..+...+...|+.+.-.|++.  +.+-+.|+.+.+
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~--l~tqgRd~~L~l   81 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS--LDTQGRDPLLIL   81 (323)
T ss_pred             CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc--hhhcCCCceEEE
Confidence            35677889999999999988765 889999999999999999999988866688999999999865  788889999999


Q ss_pred             EECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (907)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s  331 (907)
                      |++..+..+.    -|.-.++++.|.+-.  +...+.   ...|-..............  ..+..+.+..-++..    
T Consensus        82 w~ia~s~~i~----i~Si~~nslgFCrfS--l~~~~k---~~eqll~yp~rgsde~h~~--D~g~~tqv~i~dd~~----  146 (323)
T KOG0322|consen   82 WTIAYSAFIS----IHSIVVNSLGFCRFS--LVKKPK---NSEQLLEYPSRGSDETHKQ--DGGDTTQVQIADDSE----  146 (323)
T ss_pred             EEccCcceEE----Eeeeeccccccccce--eccCCC---cchhheecCCcccchhhhh--ccCccceeEccCchh----
Confidence            9998755433    244556666665532  222211   1111111100000000000  000011111111000    


Q ss_pred             EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (907)
Q Consensus       332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~  411 (907)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (323)
T KOG0322|consen  147 --------------------------------------------------------------------------------  146 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecceeeecCCCCCCceEEEEEc-CCC--CEEEEEeCCCcEEEEeCCCCccceeeeccccc--cccCcCCcEEEEEEcCCC
Q 002564          412 LGEHILRPCPENPTAVKACTIS-ACG--NFAVLGTAGGWIERFNLQSGISRGSYLDMSER--SNYAHNGEVVGVACDSTN  486 (907)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s-~~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~s~~~  486 (907)
                               ....+.+.+..+. .|+  -++++|+++|.+.+||+.++...-.+......  ....|..+|.++.+.+.-
T Consensus       147 ---------~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~  217 (323)
T KOG0322|consen  147 ---------RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC  217 (323)
T ss_pred             ---------ccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence                     0011233333321 123  25678899999999999987544433321111  224799999999999877


Q ss_pred             CEEEEEecCCeEEEEECCCC--ce--eeeeec-CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCee
Q 002564          487 TLMISAGYHGDIKVWDFKGR--DL--KSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT  561 (907)
Q Consensus       487 ~~l~s~~~dg~i~iwd~~~~--~~--~~~~~~-~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~  561 (907)
                      ..=++++.+..+..|++...  .+  ...+.. +..+..+.+-||++.+|+++.|+.||||..++..++..+.-|.+.|+
T Consensus       218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn  297 (323)
T KOG0322|consen  218 DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN  297 (323)
T ss_pred             cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee
Confidence            77788898889999988743  22  222222 36788999999999999999999999999999999999999999999


Q ss_pred             eEEECCCCcEEEEEeCCCcEEEEEc
Q 002564          562 DFCFSEDGKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       562 ~l~fspdg~~l~s~s~Dg~I~vwd~  586 (907)
                      +++|+||...+|++|+|+.|.+|++
T Consensus       298 ~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  298 AVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999986

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.83  E-value=3.2e-18  Score=163.13  Aligned_cols=280  Identities=16%  Similarity=0.263  Sum_probs=206.3

Q ss_pred             CCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCC-------eE-----EEEEc-CCCCCEEEEEEc-------CCCCEE
Q 002564          137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-------KK-----LYEFK-GWGSSISSCVSS-------PALDVV  196 (907)
Q Consensus       137 ~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~-------~~-----~~~~~-~h~~~I~~l~~s-------p~~~~l  196 (907)
                      ..+...|-|+|++  ..|++-+.|..+.+|++...       ..     .-+++ .....|...+|-       |+..++
T Consensus        49 ~nf~kgckWSPDG--SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~  126 (406)
T KOG2919|consen   49 LNFLKGCKWSPDG--SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF  126 (406)
T ss_pred             hhhhccceeCCCC--ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence            4566788999999  89999999999999998421       11     11111 114556666654       677899


Q ss_pred             EEEecCCeEEEEEccCCceEEEEeec-CC---CCEEEEEEecCCCCEEEEEeCCCcEEEEEC-CCceeeee---ee---c
Q 002564          197 AVGCSDGKIHVHNVRYDEELVTFTHS-MR---GAVTALAFSSDGQPLLASGASSGVISIWNL-EKRRLQSV---IR---E  265 (907)
Q Consensus       197 a~g~~dg~I~iwd~~~~~~~~~~~~~-~~---~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~-~~~~~~~~---~~---~  265 (907)
                      |+.+.+.-|++||.-+|+....+..- |.   ....+++|+|||. .|++| ....|++||+ +.|+....   +.   .
T Consensus       127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEeec-ccceEEEeeccCCCCCCcchhhhhcccc
Confidence            99999999999999999988777632 12   2457899999999 66655 4789999999 45532221   11   1


Q ss_pred             ccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC-CCCEEEEEc
Q 002564          266 AHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSV  343 (907)
Q Consensus       266 ~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~-dg~i~iwd~  343 (907)
                      +..+-|.+++|+|-.. .++.++....+-++.-+..    +.+..+.+|.+.|+.++|.++|+.|++|+. |-.|..||+
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi  280 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI  280 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence            3367889999999665 8999999999988865544    567777899999999999999999999875 678999998


Q ss_pred             eecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCC
Q 002564          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (907)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~  423 (907)
                      +.......--.                                                      +          ..+.
T Consensus       281 R~~~~pv~~L~------------------------------------------------------r----------hv~~  296 (406)
T KOG2919|consen  281 RYSRDPVYALE------------------------------------------------------R----------HVGD  296 (406)
T ss_pred             hhccchhhhhh------------------------------------------------------h----------hccC
Confidence            75432211000                                                      0          0011


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCC
Q 002564          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG  496 (907)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg  496 (907)
                      ...-.-..+.|+|++|++|+.+|.|++||++. |.....+.        .|...+++++++|--.++++++...
T Consensus       297 TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--------~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  297 TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--------NYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             ccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--------cccccccceecCcccceeeeccCce
Confidence            12233456788999999999999999999998 66555553        7899999999999988888887643

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=8.7e-20  Score=202.28  Aligned_cols=288  Identities=18%  Similarity=0.303  Sum_probs=219.9

Q ss_pred             EEEEEEecCCCCEEEEEe----------CCCcEEEEECCCc------eeeeeeecccccCeEEEEEecCCCE----EEEE
Q 002564          227 VTALAFSSDGQPLLASGA----------SSGVISIWNLEKR------RLQSVIREAHDNAIISLHFFANEPV----LMSA  286 (907)
Q Consensus       227 v~~l~fs~dg~~~l~sg~----------~dg~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~~~~~~~----l~s~  286 (907)
                      -..++|+|++..++++|.          .+.++.||.+...      +.+..+.  -....+.++|.+.+..    |+.|
T Consensus         9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaGG   86 (1049)
T KOG0307|consen    9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAGG   86 (1049)
T ss_pred             cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeecc
Confidence            346789998876777663          2445566654322      2333333  4567889999987765    8888


Q ss_pred             cCCCcEEEEEccC--CCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564          287 SADNSIKMWIFDT--TDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (907)
Q Consensus       287 ~~d~~i~vw~~~~--~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  363 (907)
                      ..||.|.+|+...  .+.....+.....|.++|..+.|++ .++.|++|+.||.|.+||+...+......          
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~----------  156 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG----------  156 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----------
Confidence            9999999999876  3555567788889999999999999 45599999999999999986532211100          


Q ss_pred             ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (907)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (907)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (1049)
T KOG0307|consen  157 --------------------------------------------------------------------------------  156 (1049)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECCCCceeeeeecCc---cee
Q 002564          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVGC---SLV  519 (907)
Q Consensus       444 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~i~  519 (907)
                                                .......|.+++|+..- ..|++++.+|.+.|||++..+.+-.+....   .+.
T Consensus       157 --------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S  210 (1049)
T KOG0307|consen  157 --------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS  210 (1049)
T ss_pred             --------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence                                      01344567777777643 577888899999999999887776665553   478


Q ss_pred             EEEEeeCCC-EEEEEeCCC---eEEEEEcccc-eeEEEeecCCCCeeeEEECCCC-cEEEEEeCCCcEEEEEcCCCceee
Q 002564          520 KIVYHRVNG-LLATVADDL---VIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQID  593 (907)
Q Consensus       520 ~~~~s~~~~-~la~~~~dg---~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg-~~l~s~s~Dg~I~vwd~~~~~~~~  593 (907)
                      .+.|||++. .++++++|.   .|.+||++.- ..++.+.+|...|.++.|++.+ ++|+|++.|+.|.+|+..+|+.+.
T Consensus       211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~  290 (1049)
T KOG0307|consen  211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG  290 (1049)
T ss_pred             eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence            999999864 555555543   7999998753 5688889999999999999966 899999999999999999999999


Q ss_pred             EeeeCCc-eEEEEECCCCc-eEEEEEecCCeEEEeecccccc
Q 002564          594 AIHVDVS-ITALSLSPNMD-VLATAHVDQNGVYLWVNRCMFS  633 (907)
Q Consensus       594 ~~~~~~~-v~~l~~spdg~-~lat~~~d~~~i~lW~~~~~~~  633 (907)
                      .+..... +..+.|+|... .++.++-||. |.|+.+...-.
T Consensus       291 ~~p~~~nW~fdv~w~pr~P~~~A~asfdgk-I~I~sl~~~~~  331 (1049)
T KOG0307|consen  291 ELPAQGNWCFDVQWCPRNPSVMAAASFDGK-ISIYSLQGTDT  331 (1049)
T ss_pred             ecCCCCcceeeeeecCCCcchhhhheeccc-eeeeeeecCCc
Confidence            9977544 99999999766 8888899995 99999866553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.2e-18  Score=177.00  Aligned_cols=171  Identities=16%  Similarity=0.207  Sum_probs=139.9

Q ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecC-CCCEEEEEeCCCcEEE
Q 002564          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISI  251 (907)
Q Consensus       173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-g~~~l~sg~~dg~I~i  251 (907)
                      ....+.||.+.|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..+..+|...|.++.|-|. +..++++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            445688999999999999999999999999999999999999999999999999999999985 2348999999999999


Q ss_pred             EECCCc----------eeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCC------cceeEeccCCC
Q 002564          252 WNLEKR----------RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD------PRLLRFRSGHS  314 (907)
Q Consensus       252 wd~~~~----------~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~------~~~~~~~~~h~  314 (907)
                      +|+...          .....+. .|...|..++-.|++ ..+.+++.||+++.+|+..+..-      +..+......-
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            999852          2333344 799999999999999 58889999999999999764211      11122222333


Q ss_pred             CCCeEEEEec-CCCEEEEEeCCCCEEEEEce
Q 002564          315 APPLCIRFYA-NGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       315 ~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~  344 (907)
                      -...++..+| +..+|+.|+.|-..++||.+
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            4567889999 67789999999999999964

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.81  E-value=2.1e-18  Score=169.66  Aligned_cols=292  Identities=17%  Similarity=0.179  Sum_probs=212.0

Q ss_pred             ccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCC-----cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEE
Q 002564          268 DNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD-----PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  341 (907)
Q Consensus       268 ~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~-----~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iw  341 (907)
                      ..+|.++.|.++.. .++||+.|..|++|.+......     ...+..+..|...|++++|+|+|..|++|+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            45899999998876 9999999999999988765332     34556778999999999999999999999999999999


Q ss_pred             EceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCC
Q 002564          342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP  421 (907)
Q Consensus       342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~  421 (907)
                      -.......   .... ..+                                       ..-..         ..+.....
T Consensus        93 k~~~~~~~---~~d~-e~~---------------------------------------~~ke~---------w~v~k~lr  120 (434)
T KOG1009|consen   93 KQGDVRIF---DADT-EAD---------------------------------------LNKEK---------WVVKKVLR  120 (434)
T ss_pred             EecCcCCc---cccc-hhh---------------------------------------hCccc---------eEEEEEec
Confidence            75431100   0000 000                                       00000         11122233


Q ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEE
Q 002564          422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (907)
Q Consensus       422 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  501 (907)
                      +|...+..++|+|+++++++|+-|..+++||+..|.....+.        .|...+..++|+|.++++++-+.|...+.+
T Consensus       121 ~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~--------dh~~yvqgvawDpl~qyv~s~s~dr~~~~~  192 (434)
T KOG1009|consen  121 GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD--------DHEHYVQGVAWDPLNQYVASKSSDRHPEGF  192 (434)
T ss_pred             ccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc--------ccccccceeecchhhhhhhhhccCccccee
Confidence            567899999999999999999999999999999999998885        899999999999999999999999877777


Q ss_pred             ECCCCceeeeeec------------------------CcceeEEEEeeCCCEEEEEeC----CC-----eEEEEEccc-c
Q 002564          502 DFKGRDLKSRWEV------------------------GCSLVKIVYHRVNGLLATVAD----DL-----VIRLFDVVA-L  547 (907)
Q Consensus       502 d~~~~~~~~~~~~------------------------~~~i~~~~~s~~~~~la~~~~----dg-----~I~v~d~~~-~  547 (907)
                      .+...+.+.....                        ..-...++|+|+|.++++...    .+     ..++|+-.. .
T Consensus       193 ~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~  272 (434)
T KOG1009|consen  193 SAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK  272 (434)
T ss_pred             eeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence            7654433322220                        122446789999999987642    12     234444322 2


Q ss_pred             eeEEEeecCCCCeeeEEECC------------------CCcEEEEEeCCCcEEEEEcCCCceeeEee--eCCceEEEEEC
Q 002564          548 RMVRKFEGHTDRITDFCFSE------------------DGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLS  607 (907)
Q Consensus       548 ~~~~~~~~h~~~I~~l~fsp------------------dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~--~~~~v~~l~~s  607 (907)
                      ++...+.+...+...+.|+|                  -+-.++.++.+ .|.|||.++-.++....  +-.+++.++|+
T Consensus       273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws  351 (434)
T KOG1009|consen  273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWS  351 (434)
T ss_pred             CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeec
Confidence            34555666666666666665                  12234455554 59999999888776664  34569999999


Q ss_pred             CCCceEEEEEecC
Q 002564          608 PNMDVLATAHVDQ  620 (907)
Q Consensus       608 pdg~~lat~~~d~  620 (907)
                      +||.+|+..+.||
T Consensus       352 ~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  352 DDGSVLLVSSTDG  364 (434)
T ss_pred             CCCcEEEEeccCC
Confidence            9999999999999

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3.4e-18  Score=166.44  Aligned_cols=302  Identities=15%  Similarity=0.184  Sum_probs=213.1

Q ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEcc------CCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCc
Q 002564          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR------YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV  248 (907)
Q Consensus       175 ~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~------~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~  248 (907)
                      +.+.+|.+.|+++.||.++++|++|+.|..+++|++.      +.+++.....+|...|.|++|...++ .+.+|+.+++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~  128 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGT  128 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcce
Confidence            3467899999999999999999999999999999985      45677777788889999999998877 8999999999


Q ss_pred             EEEEECCCceeeeeeecccc---cCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-
Q 002564          249 ISIWNLEKRRLQSVIREAHD---NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-  324 (907)
Q Consensus       249 I~iwd~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-  324 (907)
                      |...|+++.+.+..+.  |.   +.|+.+..+|-.+.|++.+.++.|.+||.........+ ............+.|+| 
T Consensus       129 VI~HDiEt~qsi~V~~--~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~-~~~AN~~~~F~t~~F~P~  205 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVAN--ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL-VLPANSGKNFYTAEFHPE  205 (609)
T ss_pred             eEeeecccceeeeeec--ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce-eeecCCCccceeeeecCC
Confidence            9999999999888875  54   48999999999999999999999999998765432222 22334456678899999 


Q ss_pred             CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEE
Q 002564          325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV  404 (907)
Q Consensus       325 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~  404 (907)
                      ...+|++.+..+-+-+||.+..+.......                                                  
T Consensus       206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~--------------------------------------------------  235 (609)
T KOG4227|consen  206 TPALILVNSETGGPNVFDRRMQARPVYQRS--------------------------------------------------  235 (609)
T ss_pred             CceeEEeccccCCCCceeeccccchHHhhh--------------------------------------------------
Confidence            567788888888999999875432111000                                                  


Q ss_pred             EEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEc-
Q 002564          405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD-  483 (907)
Q Consensus       405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-  483 (907)
                                 .....+.....-..+.|+|+|+.+.+--....-..||                   -|.....-+.++ 
T Consensus       236 -----------~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D-------------------~~S~R~~V~k~D~  285 (609)
T KOG4227|consen  236 -----------MFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD-------------------FISQRCFVLKSDH  285 (609)
T ss_pred             -----------ccccCcccchhhhheeeCCCCCeehhhhccCCCEEee-------------------eecccceeEeccC
Confidence                       0000000011224456666666554321111111111                   122222222222 


Q ss_pred             -CCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc---------------
Q 002564          484 -STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---------------  547 (907)
Q Consensus       484 -~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~---------------  547 (907)
                       |+| ++-                        ...+.+++|..|. .+++|+++-.|++|.+...               
T Consensus       286 N~~G-Y~N------------------------~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~  339 (609)
T KOG4227|consen  286 NPNG-YCN------------------------IKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEE  339 (609)
T ss_pred             CCCc-cee------------------------eeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhh
Confidence             111 110                        1345567776544 4999999999999987431               


Q ss_pred             --------eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEc
Q 002564          548 --------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       548 --------~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~  586 (907)
                              +.+..++||..-++.+.|+|...+|++.+-...+++|.-
T Consensus       340 ~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  340 MPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             CchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence                    224568899999999999999999999999999999963

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=5.2e-18  Score=163.31  Aligned_cols=276  Identities=17%  Similarity=0.266  Sum_probs=194.0

Q ss_pred             CEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecC-CCCEEEEEeCCCcEEEEECCCceeeeeeec-ccc-cC
Q 002564          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISIWNLEKRRLQSVIRE-AHD-NA  270 (907)
Q Consensus       194 ~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-g~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~h~-~~  270 (907)
                      ..+|++..+|.|++||..+++.+..|..+ ...+..+.|..+ +.+.+.+|+.||+|++||++.......+.. +|. .+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~-~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~  119 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP-PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP  119 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCC-CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence            57899999999999999999999999887 778889999874 556899999999999999998866655552 343 46


Q ss_pred             eEEEEEecCCCEEEEEcC----CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEcee
Q 002564          271 IISLHFFANEPVLMSASA----DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ  345 (907)
Q Consensus       271 V~~l~~~~~~~~l~s~~~----d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~  345 (907)
                      ..+++..-+++.+++|..    |-.|.+||++.....  +-.....|...|++++|+| +.+.|++|+.||.+.+||+..
T Consensus       120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             ceEeeccCcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence            667776667777777753    678999999876532  2334468999999999999 778999999999999999865


Q ss_pred             cccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCC
Q 002564          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (907)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~  425 (907)
                      +.....+.                                                                        
T Consensus       198 d~EeDaL~------------------------------------------------------------------------  205 (376)
T KOG1188|consen  198 DNEEDALL------------------------------------------------------------------------  205 (376)
T ss_pred             CcchhhHH------------------------------------------------------------------------
Confidence            42111100                                                                        


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECC
Q 002564          426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~  504 (907)
                                                        ..         ..|...|..+.|..++ +.+.+-+..++..+|+++
T Consensus       206 ----------------------------------~v---------iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  206 ----------------------------------HV---------INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             ----------------------------------Hh---------hcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence                                              00         1345556666666655 346666666777777777


Q ss_pred             CCceeeeeecC-------------cceeEEEEeeCCCEEEEEeC-CCeEEEEEcc---c---ceeEEEeec-CCCCeeeE
Q 002564          505 GRDLKSRWEVG-------------CSLVKIVYHRVNGLLATVAD-DLVIRLFDVV---A---LRMVRKFEG-HTDRITDF  563 (907)
Q Consensus       505 ~~~~~~~~~~~-------------~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~---~---~~~~~~~~~-h~~~I~~l  563 (907)
                      .+.....+..+             ..+.......+....++++. -+...++-+.   +   .+.+..+.| |..-|.++
T Consensus       243 ~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i  322 (376)
T KOG1188|consen  243 DGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI  322 (376)
T ss_pred             CCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHH
Confidence            66544333221             11111112224445555544 4555554332   2   344566776 66778999


Q ss_pred             EECCCCcEEEEEeCCCcEEEEEcC
Q 002564          564 CFSEDGKWLLSSGMDGSLRIWDVI  587 (907)
Q Consensus       564 ~fspdg~~l~s~s~Dg~I~vwd~~  587 (907)
                      .|...+.++.||++||.+.+|..+
T Consensus       323 ~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  323 LFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             hhhcccceeeccCCCceEEEEecC
Confidence            999888999999999999999973

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.80  E-value=2.5e-17  Score=154.85  Aligned_cols=289  Identities=17%  Similarity=0.292  Sum_probs=209.2

Q ss_pred             CceEEEEeecCCCCEEEEEEe--cCCCCEEEEEe----CCCcEEEEEC--CCceeeeeeecccccCeEEEEEecCCC---
Q 002564          213 DEELVTFTHSMRGAVTALAFS--SDGQPLLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEP---  281 (907)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs--~dg~~~l~sg~----~dg~I~iwd~--~~~~~~~~~~~~h~~~V~~l~~~~~~~---  281 (907)
                      .+.+.++..+  -++.++.|+  ++.+..||.|+    ..+.|.|-.+  ++++.+..-...|..+++.+.|.|+..   
T Consensus        35 ~~eiy~Y~ap--~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~  112 (364)
T KOG0290|consen   35 RKEIYTYNAP--WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY  112 (364)
T ss_pred             cceEEEecCC--CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC
Confidence            4556666654  678999998  55666889887    3456666544  455555554446999999999999863   


Q ss_pred             --EEEEEcCCCcEEEEEccCCCCCcceeEe-----ccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeec
Q 002564          282 --VLMSASADNSIKMWIFDTTDGDPRLLRF-----RSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELS  353 (907)
Q Consensus       282 --~l~s~~~d~~i~vw~~~~~~~~~~~~~~-----~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~  353 (907)
                        +|++++  ..+|+|.+...+....+...     -..+..++++..|+. +.+++.+++-|-+..+||++++..     
T Consensus       113 pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-----  185 (364)
T KOG0290|consen  113 PDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-----  185 (364)
T ss_pred             cchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----
Confidence              555554  47999988754433222222     234567888888887 777888888888888888764310     


Q ss_pred             hhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEc
Q 002564          354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS  433 (907)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s  433 (907)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (364)
T KOG0290|consen  186 --------------------------------------------------------------------------------  185 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECCCCceeeee
Q 002564          434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW  512 (907)
Q Consensus       434 ~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~  512 (907)
                                            +.....+        .+|...|..++|...+ +.+++.|.||.+|++|++..+.-..+
T Consensus       186 ----------------------~~vkTQL--------IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII  235 (364)
T KOG0290|consen  186 ----------------------GTVKTQL--------IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII  235 (364)
T ss_pred             ----------------------cceeeEE--------EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence                                  0011111        3899999999999865 68899999999999999876544333


Q ss_pred             e---c-CcceeEEEEeeCC-CEEEEEeC-CCeEEEEEcccc-eeEEEeecCCCCeeeEEECCCC-cEEEEEeCCCcEEEE
Q 002564          513 E---V-GCSLVKIVYHRVN-GLLATVAD-DLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIW  584 (907)
Q Consensus       513 ~---~-~~~i~~~~~s~~~-~~la~~~~-dg~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg-~~l~s~s~Dg~I~vw  584 (907)
                      -   . ..+...++|+++. +++|+-.. ...|.|.|++.. ..+.++++|.+.|+.++|.|.. ..|+|++.|..+.+|
T Consensus       236 YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW  315 (364)
T KOG0290|consen  236 YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW  315 (364)
T ss_pred             ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEE
Confidence            2   1 3678889998844 56776544 468999999754 6789999999999999999965 689999999999999


Q ss_pred             EcCCCc------eeeEeeeCCceEEEEECC-CCceEEEEEecC
Q 002564          585 DVILAR------QIDAIHVDVSITALSLSP-NMDVLATAHVDQ  620 (907)
Q Consensus       585 d~~~~~------~~~~~~~~~~v~~l~~sp-dg~~lat~~~d~  620 (907)
                      |+.+--      ++-.+.....|..+.|++ .+++++.+....
T Consensus       316 Dl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kk  358 (364)
T KOG0290|consen  316 DLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKK  358 (364)
T ss_pred             ecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCe
Confidence            997532      334445566799999996 678888887654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=9.1e-20  Score=181.85  Aligned_cols=298  Identities=16%  Similarity=0.235  Sum_probs=237.0

Q ss_pred             CCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceE
Q 002564          314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (907)
Q Consensus       314 ~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  393 (907)
                      .-.+..+.|+.+|++++.|+..|.+..+|..+.....++..                                       
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---------------------------------------  169 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---------------------------------------  169 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh---------------------------------------
Confidence            34678899999999999999999999999998877776543                                       


Q ss_pred             EEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCc
Q 002564          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH  473 (907)
Q Consensus       394 ~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h  473 (907)
                                                    ...|..+.|-.+.++++++ ....+++||-.. ..+..+         ..
T Consensus       170 ------------------------------~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G-tElHCl---------k~  208 (545)
T KOG1272|consen  170 ------------------------------METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG-TELHCL---------KR  208 (545)
T ss_pred             ------------------------------hhhhhhhhhhcchHHHHhh-hhceEEEecCCC-cEEeeh---------hh
Confidence                                          1556677777777888776 566789998653 333333         23


Q ss_pred             CCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEE
Q 002564          474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK  552 (907)
Q Consensus       474 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~  552 (907)
                      ...|..+.|-|..-+|++++..|.++.-|+.+|+++..+... +.+..++-.|-+..+-+|..+|+|.+|.....+++..
T Consensus       209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK  288 (545)
T KOG1272|consen  209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK  288 (545)
T ss_pred             cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence            357889999999989999999999999999999999988766 7888899999999999999999999999999999999


Q ss_pred             eecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec----
Q 002564          553 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN----  628 (907)
Q Consensus       553 ~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~----  628 (907)
                      +-.|.++|.+|++.++|+|+||++.|..++|||++.-..+..++.+.+...+++|..| +||.+-.+  .|.+|.-    
T Consensus       289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~--~v~iw~d~~~~  365 (545)
T KOG1272|consen  289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGD--HVQIWKDALKG  365 (545)
T ss_pred             HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCC--eeeeehhhhcC
Confidence            9999999999999999999999999999999999998888888877789999999776 34444333  3999963    


Q ss_pred             ------------------ccccccCCCCccCCCCCcceeecCCCccCCCCccCCCCCCCCCccCCCCCCCCCCCCCcccc
Q 002564          629 ------------------RCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQ  690 (907)
Q Consensus       629 ------------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (907)
                                        ...|+|...+..+.....+..+-+|+.++...+..++..-.    ......|.+.-...+.|
T Consensus       366 s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfe----trKQRqE~EVr~LLeKi  441 (545)
T KOG1272|consen  366 SGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFE----TRKQRQEKEVRSLLEKI  441 (545)
T ss_pred             CCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcch----hhhHHhHHHHHHHHhhC
Confidence                              33566665555667777788889999888777665554321    11222222444566788


Q ss_pred             ccCceeec
Q 002564          691 IPDLVTLS  698 (907)
Q Consensus       691 ~~~l~tls  698 (907)
                      .++||+|-
T Consensus       442 ppElIsLd  449 (545)
T KOG1272|consen  442 PPELISLD  449 (545)
T ss_pred             ChHhEEec
Confidence            99999987

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.79  E-value=2.2e-16  Score=167.69  Aligned_cols=334  Identities=16%  Similarity=0.176  Sum_probs=209.0

Q ss_pred             CEE-EEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEE
Q 002564          152 NKV-IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (907)
Q Consensus       152 ~~l-~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l  230 (907)
                      +.+ ++-..+|.|.+.|..+.+.+..+......-..+.++|||+++++++.||.|.++|+.+++.+.++..+  ....++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceE
Confidence            344 44556899999999999999999875554456789999999999999999999999999999999876  568999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecc------cccCeEEEEEecCCCEEEEEcCC-CcEEEEEccCCCCC
Q 002564          231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA------HDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGD  303 (907)
Q Consensus       231 ~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~  303 (907)
                      ++++||+++++++...+.+.++|.++.+.+..+..+      ....+.++..+|..+.++..-.| +.|.+-|+...  .
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~--~  161 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP--K  161 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS--S
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc--c
Confidence            999999955555567899999999999999888732      23467888889998866655544 55544444332  2


Q ss_pred             cceeEeccCCCCCCeEEEEecCCCEEEEE-eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeec
Q 002564          304 PRLLRFRSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (907)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (907)
                      ....... ..........|+|++++++.+ ..+..+.++|..+.+....+..+.                          
T Consensus       162 ~~~~~~i-~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~--------------------------  214 (369)
T PF02239_consen  162 NLKVTTI-KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK--------------------------  214 (369)
T ss_dssp             CEEEEEE-E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS--------------------------
T ss_pred             ccceeee-cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc--------------------------
Confidence            2222222 334556778888888887664 345566666654432221110000                          


Q ss_pred             ccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (907)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~  462 (907)
                                                 .           .++.+...                                +
T Consensus       215 ---------------------------~-----------p~~~~~~~--------------------------------~  224 (369)
T PF02239_consen  215 ---------------------------K-----------PHPGPGAN--------------------------------F  224 (369)
T ss_dssp             ---------------------------S-----------BEETTEEE--------------------------------E
T ss_pred             ---------------------------c-----------cccccccc--------------------------------c
Confidence                                       0           00000000                                0


Q ss_pred             eccccccccCcCC--cEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEE----eCC
Q 002564          463 LDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV----ADD  536 (907)
Q Consensus       463 ~~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~----~~d  536 (907)
                               .|..  ++....  ..+...++.-....+.+||..+.+.++++...+.-.-+..||+++++.+.    ...
T Consensus       225 ---------php~~g~vw~~~--~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~  293 (369)
T PF02239_consen  225 ---------PHPGFGPVWATS--GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDA  293 (369)
T ss_dssp             ---------EETTTEEEEEEE--BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSH
T ss_pred             ---------cCCCcceEEeec--cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCC
Confidence                     1221  222221  22333333333456678999999999999887666888999999999998    455


Q ss_pred             CeEEEEEcccceeEEEeecC-CCCeeeEEECCCCcEEEEEeC--CCcEEEEEcCCCceeeEeee
Q 002564          537 LVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSGM--DGSLRIWDVILARQIDAIHV  597 (907)
Q Consensus       537 g~I~v~d~~~~~~~~~~~~h-~~~I~~l~fspdg~~l~s~s~--Dg~I~vwd~~~~~~~~~~~~  597 (907)
                      +.|.++|.++.+.+.++... ...+..+.|++||+++..+..  ++.|.+||..|.+.+..+..
T Consensus       294 ~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~  357 (369)
T PF02239_consen  294 DTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV  357 (369)
T ss_dssp             T-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred             ceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence            89999999999888887633 235889999999997665543  34799999999999998873

...

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.4e-16  Score=145.90  Aligned_cols=269  Identities=17%  Similarity=0.273  Sum_probs=194.4

Q ss_pred             cceEEEEEecCeEEEEEcCe---EEEEeC-----------Ce-eEEEEcccccceEEEEeeCCEEEEEecCCcEEEEecC
Q 002564           57 KKIRALASYRDYTFAAYGNH---IAVVKR-----------AH-QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFK  121 (907)
Q Consensus        57 ~~I~~la~~~~~~~~a~g~~---I~vw~~-----------~~-~~~~~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~  121 (907)
                      ..|-+-|++|-++|++.|+.   |.+...           ++ .+...++|.++|..+++..++|++++ ||.|+=|...
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeeh
Confidence            34556678899999988765   777752           22 24447999999999999999999998 7999999987


Q ss_pred             CCCcc---------ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCC
Q 002564          122 GIEEN---------LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA  192 (907)
Q Consensus       122 ~~~~~---------~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~  192 (907)
                      ..+..         ..|.+.-...-..+..+.+.|..  +-++.++.|+.++-||+++|+...++++|+..|.+++--..
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            65431         11111111122334566678887  77888889999999999999999999999999999998665


Q ss_pred             CCEEEEEecCCeEEEEEccCCceEEEEeec---------CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 002564          193 LDVVAVGCSDGKIHVHNVRYDEELVTFTHS---------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI  263 (907)
Q Consensus       193 ~~~la~g~~dg~I~iwd~~~~~~~~~~~~~---------~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~  263 (907)
                      ...+++|++||++++||.++++.+..+...         -...|-+++-+.|   .|++|+ ...+.+|+++..++...+
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp~lslwhLrsse~t~vf  243 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GPKLSLWHLRSSESTCVF  243 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CCceeEEeccCCCceEEE
Confidence            667999999999999999999988877532         1235677766544   677665 568999999999998888


Q ss_pred             ecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEE-EEeCCCCEEEE
Q 002564          264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLF  341 (907)
Q Consensus       264 ~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~-s~~~dg~i~iw  341 (907)
                      .  -...+..+.|..+  .+++++..+.|.-|.+..     .+...........++..+....-.++ .++....+.++
T Consensus       244 p--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G-----vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  244 P--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG-----VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             e--cccceeEeeeecc--eEEEeccccceeeeeecc-----EEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            6  6778899999755  688888888999996643     22222233333444555544333333 34555555554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=3e-16  Score=168.13  Aligned_cols=273  Identities=11%  Similarity=0.131  Sum_probs=184.7

Q ss_pred             EEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEe-CCCCEEEEEceecccceeechhhhhHHH
Q 002564          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRA  361 (907)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~  361 (907)
                      .++...++.|.+|+++.. +....+.... +.+.+..++++|++++|++++ .++.|.+|++..........        
T Consensus         5 y~~~~~~~~I~~~~~~~~-g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~--------   74 (330)
T PRK11028          5 YIASPESQQIHVWNLNHE-GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA--------   74 (330)
T ss_pred             EEEcCCCCCEEEEEECCC-CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee--------
Confidence            344467899999999643 3334455443 346678899999999987764 57888888875211111000        


Q ss_pred             hhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEE
Q 002564          362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL  441 (907)
Q Consensus       362 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  441 (907)
                                                                            ..    ........++++|+|+++++
T Consensus        75 ------------------------------------------------------~~----~~~~~p~~i~~~~~g~~l~v   96 (330)
T PRK11028         75 ------------------------------------------------------ES----PLPGSPTHISTDHQGRFLFS   96 (330)
T ss_pred             ------------------------------------------------------ee----cCCCCceEEEECCCCCEEEE
Confidence                                                                  00    01134568999999998888


Q ss_pred             Ee-CCCcEEEEeCCC-CccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCceee-------e
Q 002564          442 GT-AGGWIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS-------R  511 (907)
Q Consensus       442 g~-~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~-------~  511 (907)
                      ++ .++.|.+|++.. +........      ..+.....+++++|+++++++++ .++.|.+||+.+...+.       .
T Consensus        97 ~~~~~~~v~v~~~~~~g~~~~~~~~------~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~  170 (330)
T PRK11028         97 ASYNANCVSVSPLDKDGIPVAPIQI------IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT  170 (330)
T ss_pred             EEcCCCeEEEEEECCCCCCCCceee------ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence            76 478999999964 322111110      12234467788999999886555 66999999997632221       1


Q ss_pred             eecCcceeEEEEeeCCCEEEEEeC-CCeEEEEEccc--c--eeEEEeecCC------CCeeeEEECCCCcEEEEEe-CCC
Q 002564          512 WEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVA--L--RMVRKFEGHT------DRITDFCFSEDGKWLLSSG-MDG  579 (907)
Q Consensus       512 ~~~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~~--~--~~~~~~~~h~------~~I~~l~fspdg~~l~s~s-~Dg  579 (907)
                      .........++|+|+++++++++. ++.|.+||+..  +  +.+..+..+.      .....+.|+|||++|+++. .++
T Consensus       171 ~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~  250 (330)
T PRK11028        171 TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS  250 (330)
T ss_pred             cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC
Confidence            223456678999999999988876 89999999973  3  3344443221      1233688999999999885 478


Q ss_pred             cEEEEEcCCCc----eeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          580 SLRIWDVILAR----QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       580 ~I~vwd~~~~~----~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                      +|.+|++....    .+..+........+.|+|||++|++++...++|.+|++.
T Consensus       251 ~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        251 LISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            99999996532    233333333467899999999999998755579999864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=1.6e-18  Score=177.58  Aligned_cols=271  Identities=21%  Similarity=0.340  Sum_probs=200.8

Q ss_pred             eeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC----CCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC
Q 002564          262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT----TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (907)
Q Consensus       262 ~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~----~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~  337 (907)
                      ++. .|...|+.+.|.|..+.|++++.||.+++|++..    .......+.++.+|.++|.|+++.+++.++++|+-||+
T Consensus       289 tl~-s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  289 TLR-SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eee-cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            444 7889999999999999999999999999999832    22334567788999999999999999999999999999


Q ss_pred             EEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceee
Q 002564          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (907)
Q Consensus       338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~  417 (907)
                      |+.|++..........                                                       ..   ....
T Consensus       368 I~~w~~p~n~dp~ds~-------------------------------------------------------dp---~vl~  389 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSY-------------------------------------------------------DP---SVLS  389 (577)
T ss_pred             eeeeccCCCCCccccc-------------------------------------------------------Cc---chhc
Confidence            9999875221111000                                                       00   0111


Q ss_pred             ecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCC
Q 002564          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG  496 (907)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg  496 (907)
                      ....+|...+..+++|+....|+.++.||+++.|+...... ..|..      ....+...++.+-... ...++...-+
T Consensus       390 ~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~------~~e~g~Plsvd~~ss~~a~~~~s~~~~  462 (577)
T KOG0642|consen  390 GTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE------PKEHGYPLSVDRTSSRPAHSLASFRFG  462 (577)
T ss_pred             cceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC------ccccCCcceEeeccchhHhhhhhcccc
Confidence            22236778999999999999999999999999999987766 33321      1122333445544332 1222222223


Q ss_pred             eEEEEECCCCceeeeeecC--------cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCC
Q 002564          497 DIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (907)
Q Consensus       497 ~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd  568 (907)
                      .--+.++........+...        ..+..+..+|.+.+.+++..|+.|+++|..+++++.....|...++++++.|+
T Consensus       463 ~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~n  542 (577)
T KOG0642|consen  463 YTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPN  542 (577)
T ss_pred             cccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCC
Confidence            3333344444333333221        56788899999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCceeeEeeeC
Q 002564          569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD  598 (907)
Q Consensus       569 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~  598 (907)
                      |.+|++++.||.+++|.+....++.....+
T Consensus       543 g~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  543 GPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             CceEEeecCCceeehhhccchheeeccccc
Confidence            999999999999999999877776655443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=5.3e-19  Score=196.17  Aligned_cols=275  Identities=19%  Similarity=0.271  Sum_probs=208.4

Q ss_pred             ecCCcEEEEecCC--CCccccceeeEecCCCcccEEEEcCCCCC--CEEEEEecCCcEEEEecCCC------eEEEEEcC
Q 002564          110 DIDGNMFIWAFKG--IEENLAPVGHVKLDDKFTPTCIMHPDTYL--NKVIVGSQEGSLQLWNISTK------KKLYEFKG  179 (907)
Q Consensus       110 ~~dg~v~vWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~l~~~s~dg~i~iwd~~~~------~~~~~~~~  179 (907)
                      +.+.++-+|.++-  .+....++..+.....+ ...+|.+.+..  ..|+.|..||.|.+||...-      ..+.+...
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF-~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~  114 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGSLQSSNRF-NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK  114 (1049)
T ss_pred             ccccccceeeecccCccccccccccccccccc-eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc
Confidence            3455566665433  33222334444444444 34455554421  25888999999999998652      34667789


Q ss_pred             CCCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCCceEEEE-eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 002564          180 WGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (907)
Q Consensus       180 h~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~~~~~~~-~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~  257 (907)
                      |.+.|..+.|++... +||+|+.||.|.|||+..-+.-... .....+.|.+++|+..-.++|++++.+|.+.|||++..
T Consensus       115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~  194 (1049)
T KOG0307|consen  115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK  194 (1049)
T ss_pred             cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence            999999999999765 9999999999999999976655555 23235789999999888789999999999999999999


Q ss_pred             eeeeeeecccc--cCeEEEEEecCCC-EEEEEcCC---CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEE
Q 002564          258 RLQSVIREAHD--NAIISLHFFANEP-VLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHIL  330 (907)
Q Consensus       258 ~~~~~~~~~h~--~~V~~l~~~~~~~-~l~s~~~d---~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~  330 (907)
                      +.+-.+. .|.  ..+..++|+|+.. .+++++.|   -.|.+||++..+.   .++.+.+|...|.++.|++ |.++++
T Consensus       195 ~pii~ls-~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~~H~~GilslsWc~~D~~lll  270 (1049)
T KOG0307|consen  195 KPIIKLS-DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILEGHQRGILSLSWCPQDPRLLL  270 (1049)
T ss_pred             Ccccccc-cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhhcccccceeeeccCCCCchhhh
Confidence            8777776 343  3478999999874 56666654   3689999887653   4556689999999999999 558999


Q ss_pred             EEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeec
Q 002564          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (907)
Q Consensus       331 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~  410 (907)
                      +++.|+.+.+|+..+++...++..                                                        
T Consensus       271 SsgkD~~ii~wN~~tgEvl~~~p~--------------------------------------------------------  294 (1049)
T KOG0307|consen  271 SSGKDNRIICWNPNTGEVLGELPA--------------------------------------------------------  294 (1049)
T ss_pred             cccCCCCeeEecCCCceEeeecCC--------------------------------------------------------
Confidence            999999999999988776666532                                                        


Q ss_pred             eecceeeecCCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc
Q 002564          411 VLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERFNLQSGI  457 (907)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~i~d~~~~~  457 (907)
                                  ....+..+.|.|..- .+++++-+|.|.||.+.++.
T Consensus       295 ------------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  295 ------------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ------------CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence                        126677888888764 78899999999999998765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=6.8e-16  Score=165.45  Aligned_cols=281  Identities=11%  Similarity=0.098  Sum_probs=183.0

Q ss_pred             EEecCCeEEEEEccC-Cc--eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECC-CceeeeeeecccccCeEE
Q 002564          198 VGCSDGKIHVHNVRY-DE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE-KRRLQSVIREAHDNAIIS  273 (907)
Q Consensus       198 ~g~~dg~I~iwd~~~-~~--~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~h~~~V~~  273 (907)
                      +...++.|.+|++.+ ++  .+..+..  .+....++++|+++.+++++..++.|.+|++. +++....-.....+....
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            336689999999974 33  3344432  35678899999999333444568999999997 343321111123345789


Q ss_pred             EEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEe-CCCCEEEEEceeccccee
Q 002564          274 LHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRE  351 (907)
Q Consensus       274 l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~-~dg~i~iwd~~~~~~~~~  351 (907)
                      ++|+|+++++++++. ++.|.+|+++............ .+...+.+++++|+++++++++ .++.|.+||+.+......
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            999999998888764 8899999987432221222222 2334577889999999886554 568999999865322110


Q ss_pred             echhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEE
Q 002564          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (907)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  431 (907)
                      ...                                                            ......  .......++
T Consensus       164 ~~~------------------------------------------------------------~~~~~~--~g~~p~~~~  181 (330)
T PRK11028        164 QEP------------------------------------------------------------AEVTTV--EGAGPRHMV  181 (330)
T ss_pred             cCC------------------------------------------------------------CceecC--CCCCCceEE
Confidence            000                                                            000000  013456789


Q ss_pred             EcCCCCEEEEEeC-CCcEEEEeCCC--Ccc--ceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 002564          432 ISACGNFAVLGTA-GGWIERFNLQS--GIS--RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG  505 (907)
Q Consensus       432 ~s~~g~~l~~g~~-dg~i~i~d~~~--~~~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~  505 (907)
                      |+|+|+++++.+. ++.|.+|++..  +..  ...+...+  ....+......+.++|++++++++. .++.|.+|++..
T Consensus       182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP--ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC--CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            9999999988877 89999999974  322  22221100  0001222345789999999998886 478999999864


Q ss_pred             Cc----eeeeeecCcceeEEEEeeCCCEEEEEeC-CCeEEEEEcc
Q 002564          506 RD----LKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV  545 (907)
Q Consensus       506 ~~----~~~~~~~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~  545 (907)
                      ..    .+...........+.++|+|++|+++.. +++|.+|+++
T Consensus       260 ~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        260 DGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            32    2333333345678999999999998876 8899999874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=1.3e-17  Score=163.15  Aligned_cols=235  Identities=15%  Similarity=0.205  Sum_probs=184.5

Q ss_pred             EEEEcccccceEEEEe---eCCEEEEEecCCcEEEEecCCCCcc---ccceeeEecCCCcccEEEEcCCCCCCEEEEEec
Q 002564           86 VATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEEN---LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ  159 (907)
Q Consensus        86 ~~~~~~h~~~V~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~  159 (907)
                      .-.+.||+++|..+.|   +...|||||.|.+|.||++..+.+.   ..++..+.+|...+..+++||... |.|++++.
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~  152 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGS  152 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccC
Confidence            3447899999999996   6789999999999999999876653   345788889999999999999886 89999999


Q ss_pred             CCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCE
Q 002564          160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL  239 (907)
Q Consensus       160 dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~  239 (907)
                      |++|.+||+.+|+.+.++. |...|.++.|+.+|.++++++.|..|+|||.++++.+..-..|....-..+-|..+|. +
T Consensus       153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i  230 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I  230 (472)
T ss_pred             CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence            9999999999999999988 9999999999999999999999999999999999999888666455677778888998 6


Q ss_pred             EEEEe---CCCcEEEEECCCceeeeee-ecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCCC
Q 002564          240 LASGA---SSGVISIWNLEKRRLQSVI-REAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (907)
Q Consensus       240 l~sg~---~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (907)
                      +.+|.   ++..+.+||..+-..-..+ ....++.|.---|.+|...+..+| .|+.|+.|.+.....-...+..+ ...
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f-~S~  309 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF-SSK  309 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc-ccC
Confidence            66664   5789999987654322222 112456677777788888776555 59999999876543222222222 223


Q ss_pred             CCCeEEEEec
Q 002564          315 APPLCIRFYA  324 (907)
Q Consensus       315 ~~v~~i~~~~  324 (907)
                      .+-..+.|.|
T Consensus       310 epQRG~g~mP  319 (472)
T KOG0303|consen  310 EPQRGMGFMP  319 (472)
T ss_pred             Cccccccccc
Confidence            4455666665

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=1.7e-17  Score=153.92  Aligned_cols=291  Identities=17%  Similarity=0.223  Sum_probs=201.0

Q ss_pred             eeEEEEcccccceEEEEee-CCEEEEEecCCcEEEEecCCCCccccceeeEe-cCCCcccEEEEcCCCCCCEEEEEecCC
Q 002564           84 HQVATWSRHSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVK-LDDKFTPTCIMHPDTYLNKVIVGSQEG  161 (907)
Q Consensus        84 ~~~~~~~~h~~~V~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~l~~~s~dg  161 (907)
                      .+...+++|.+.|+++.|+ ..+|+++...|.|++|++.+...    ...+. ++..++...-.-|.+   .+.+-+.|+
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~----~~~~r~~g~~~it~lq~~p~d---~l~tqgRd~   77 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERD----LPLIRLFGRLFITNLQSIPND---SLDTQGRDP   77 (323)
T ss_pred             CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCcc----chhhhhhccceeeceeecCCc---chhhcCCCc
Confidence            3456788999999999995 66899999999999999999877    55555 344444444455543   588888999


Q ss_pred             cEEEEecCCCeEEEEEcCCCCCEEEEEEcC-----CCC----EEEEEecCC-eEEEEEccCCceEEEEe---ecCCCCEE
Q 002564          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSP-----ALD----VVAVGCSDG-KIHVHNVRYDEELVTFT---HSMRGAVT  228 (907)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp-----~~~----~la~g~~dg-~I~iwd~~~~~~~~~~~---~~~~~~v~  228 (907)
                      .+.+|++.-+.-+..   |.-.++++.|.+     .++    .++.-++.. .+++-|......+....   ....+.+.
T Consensus        78 ~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm  154 (323)
T KOG0322|consen   78 LLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM  154 (323)
T ss_pred             eEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence            999999976543322   223334444433     111    222211111 11222211111111111   11235677


Q ss_pred             EEEEecC--CCCEEEEEeCCCcEEEEECCCcee----------eeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEE
Q 002564          229 ALAFSSD--GQPLLASGASSGVISIWNLEKRRL----------QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (907)
Q Consensus       229 ~l~fs~d--g~~~l~sg~~dg~I~iwd~~~~~~----------~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~  296 (907)
                      |..+.-+  ...++++|..+|.+.+||+.++..          ..... .|..+|.++.|.+.-..=++++.+..+..|+
T Consensus       155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~a-sh~qpvlsldyas~~~rGisgga~dkl~~~S  233 (323)
T KOG0322|consen  155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNA-SHKQPVLSLDYASSCDRGISGGADDKLVMYS  233 (323)
T ss_pred             eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchh-hccCcceeeeechhhcCCcCCCccccceeee
Confidence            7664332  334677788999999999999833          33333 6899999999998766678888889999999


Q ss_pred             ccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCce
Q 002564          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (907)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  376 (907)
                      ++...+....-....-..-.+..++.-||++.++++|.|+.+|+|+.++......+.                       
T Consensus       234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-----------------------  290 (323)
T KOG0322|consen  234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-----------------------  290 (323)
T ss_pred             eccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-----------------------
Confidence            987755544433444445678899999999999999999999999988765544332                       


Q ss_pred             eEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 002564          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (907)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~  453 (907)
                                                                   .|...+.+++|+|+...++.++.|++|.+|++
T Consensus       291 ---------------------------------------------yHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  291 ---------------------------------------------YHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ---------------------------------------------hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                                                         45688999999999999999999999999986

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=1.4e-18  Score=185.01  Aligned_cols=285  Identities=20%  Similarity=0.271  Sum_probs=224.7

Q ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEE
Q 002564          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (907)
Q Consensus       173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iw  252 (907)
                      .+..+.+|...|.|..|...|.++++|+.|..++||..+++.++....+| .+.|+.++.+.+.. ++++++.|..|++|
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh-s~ditdlavs~~n~-~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH-SGDITDLAVSSNNT-MIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC-ccccchhccchhhh-hhhhcccCceEEEE
Confidence            34556789999999999999999999999999999999999999999887 88999999998887 89999999999999


Q ss_pred             ECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCC--CCcceeEeccCCCCCCeEEEEecCCCEEE
Q 002564          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD--GDPRLLRFRSGHSAPPLCIRFYANGRHIL  330 (907)
Q Consensus       253 d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~--~~~~~~~~~~~h~~~v~~i~~~~~g~~l~  330 (907)
                      .+.++.++..+. +|++.|++++|+|-.    +.+.||++++||.+...  ..++....  ....-+.++.|..++..++
T Consensus       260 rl~~~~pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~--~~~~~~~s~~~~~~~~~f~  332 (1113)
T KOG0644|consen  260 RLPDGAPVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKF--TEKDLVDSILFENNGDRFL  332 (1113)
T ss_pred             ecCCCchHHHHh-ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCc--ccccceeeeeccccccccc
Confidence            999999999999 999999999999975    77889999999987221  11122211  1235567788888888999


Q ss_pred             EEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeec
Q 002564          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (907)
Q Consensus       331 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~  410 (907)
                      |++.|+.-+.|.........                                                            
T Consensus       333 Tgs~d~ea~n~e~~~l~~~~------------------------------------------------------------  352 (1113)
T KOG0644|consen  333 TGSRDGEARNHEFEQLAWRS------------------------------------------------------------  352 (1113)
T ss_pred             cccCCcccccchhhHhhhhc------------------------------------------------------------
Confidence            99999988877653211000                                                            


Q ss_pred             eecceeeecCCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC-E
Q 002564          411 VLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-L  488 (907)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~  488 (907)
                                    ..+.-+..+.+ ..+.+++-.+-.+.+|++.+|.......        +|...+..+.++|-+. .
T Consensus       353 --------------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~--------ghsd~~yvLd~Hpfn~ri  410 (1113)
T KOG0644|consen  353 --------------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM--------GHSDEVYVLDVHPFNPRI  410 (1113)
T ss_pred             --------------cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc--------ccccceeeeeecCCCcHh
Confidence                          00000111111 1344555566778899999998877765        8999999999999774 4


Q ss_pred             EEEEecCCeEEEEECCCCceeeeee-cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccce
Q 002564          489 MISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR  548 (907)
Q Consensus       489 l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~  548 (907)
                      ..+++.||...|||+-.|.+++.+. .+..+....||+||..++...+-|.++|.....++
T Consensus       411 ~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  411 AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            5688999999999999988777664 35788889999999999999888999998765544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1.6e-17  Score=170.32  Aligned_cols=263  Identities=18%  Similarity=0.293  Sum_probs=192.2

Q ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccC--------CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCC
Q 002564          175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY--------DEELVTFTHSMRGAVTALAFSSDGQPLLASGASS  246 (907)
Q Consensus       175 ~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~--------~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d  246 (907)
                      .++..|...|+.++|.|....|++++.||.|.+|++..        -+++.+|..| .++|.|+++.+++. .+.+|+.|
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-~gPVl~v~v~~n~~-~~ysgg~D  365 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-EGPVLCVVVPSNGE-HCYSGGID  365 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc-cCceEEEEecCCce-EEEeeccC
Confidence            36678899999999999999999999999999999932        2467888876 89999999999999 89999999


Q ss_pred             CcEEEEECCCc----------eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCC
Q 002564          247 GVISIWNLEKR----------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP  316 (907)
Q Consensus       247 g~I~iwd~~~~----------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~  316 (907)
                      |+|+.|++...          .....+. ||...|+.+++++....|++++.||+++.|+.....  + +........+.
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~--~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES--P-CTFGEPKEHGY  441 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhcccee-ccccceeeeeecccccceeeecCCceEEeeccCCcC--c-cccCCccccCC
Confidence            99999965421          2344455 999999999999999999999999999999764432  2 21111222344


Q ss_pred             CeEEEEecCC-CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEE
Q 002564          317 PLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC  395 (907)
Q Consensus       317 v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  395 (907)
                      +.++.+.... .+.++...-+.--+.+.........+...                                        
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~----------------------------------------  481 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS----------------------------------------  481 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeecccc----------------------------------------
Confidence            5566654322 22222222222222222222211111100                                        


Q ss_pred             eeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCC
Q 002564          396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG  475 (907)
Q Consensus       396 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  475 (907)
                                           ..+.......+..+...|.+.+.+.+..++.|++||..++..+....        +|..
T Consensus       482 ---------------------~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~--------a~~~  532 (577)
T KOG0642|consen  482 ---------------------ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV--------AHKD  532 (577)
T ss_pred             ---------------------CCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee--------eccc
Confidence                                 00000112456777888899999999999999999999999988875        8999


Q ss_pred             cEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeee
Q 002564          476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW  512 (907)
Q Consensus       476 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  512 (907)
                      .++++++.|+|.+|++++.|+.+++|.+....++...
T Consensus       533 svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es  569 (577)
T KOG0642|consen  533 SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES  569 (577)
T ss_pred             eecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence            9999999999999999999999999998776655443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.2e-15  Score=159.68  Aligned_cols=432  Identities=14%  Similarity=0.150  Sum_probs=268.7

Q ss_pred             CCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecC------------eEEEEEcC---eEEEEeCCee--EE
Q 002564           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRD------------YTFAAYGN---HIAVVKRAHQ--VA   87 (907)
Q Consensus        25 ~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~------------~~~~a~g~---~I~vw~~~~~--~~   87 (907)
                      +...+++++.+..|.+-|..+.+.+.....|+..|+.+.|.|-            ...+|+++   +|.+||..-.  +.
T Consensus        24 ~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~  103 (1062)
T KOG1912|consen   24 SPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN  103 (1062)
T ss_pred             CccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence            4455667777899999999999999988999999999998854            34566654   4999995443  44


Q ss_pred             EEcccccceEEEEe-----eC-CEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCC
Q 002564           88 TWSRHSAKVNLLLL-----FG-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG  161 (907)
Q Consensus        88 ~~~~h~~~V~~l~~-----~g-~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg  161 (907)
                      .+..|..+|..+.|     +. +.|++.....++.+|+..+|+.    +-.............+.|-.. ..+..-+..|
T Consensus       104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k----~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g  178 (1062)
T KOG1912|consen  104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK----FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKG  178 (1062)
T ss_pred             hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce----eeccccCCcceeeeeeCCCCc-ceEEEEccCc
Confidence            48899999999986     23 6788888899999999999988    333333333333333555443 3444444556


Q ss_pred             cEEEEecC-------CCeEEEEEcCCCC------------CE-------------EEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          162 SLQLWNIS-------TKKKLYEFKGWGS------------SI-------------SSCVSSPALDVVAVGCSDGKIHVHN  209 (907)
Q Consensus       162 ~i~iwd~~-------~~~~~~~~~~h~~------------~I-------------~~l~~sp~~~~la~g~~dg~I~iwd  209 (907)
                      .+.+-+.-       .|+..+.-..|..            .+             -.++|+|.-+.+....-...+.++|
T Consensus       179 ~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~d  258 (1062)
T KOG1912|consen  179 FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFD  258 (1062)
T ss_pred             eEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEc
Confidence            66665442       2444444334322            01             1246788765555555567899999


Q ss_pred             ccCCceEEEEeecCCCCEEEEEEecCCC-CEEEEEeCCCcEEEEECCCceee----------------eeeecccccCeE
Q 002564          210 VRYDEELVTFTHSMRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKRRLQ----------------SVIREAHDNAII  272 (907)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~-~~l~sg~~dg~I~iwd~~~~~~~----------------~~~~~~h~~~V~  272 (907)
                      ++-..++...... .+.+.-+.+-|+++ ..|.+.-.||.+.+|--+.....                ..+..-..-.+.
T Consensus       259 le~~~~l~vvpie-r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~  337 (1062)
T KOG1912|consen  259 LEYECCLAVVPIE-RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV  337 (1062)
T ss_pred             chhhceeEEEEec-cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccc
Confidence            9998888888776 66777888888764 36788889999999976542111                111111111222


Q ss_pred             EEEEecC-CCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecC-----CCEEEEEeCCCCEEEEEceec
Q 002564          273 SLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFRLFSVIQD  346 (907)
Q Consensus       273 ~l~~~~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-----g~~l~s~~~dg~i~iwd~~~~  346 (907)
                      .....|. ...++.--.+|.+.+|.+..+...   .....+...-+..+.|+..     ...+.+-+.||.     ...+
T Consensus       338 ~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~---~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~-----h~sG  409 (1062)
T KOG1912|consen  338 IGASCPSTPSALAVLYSSGDSTFWQLSNGRIH---LDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGS-----HSSG  409 (1062)
T ss_pred             eeecCCCChhhhhhhhhcchhHHHhhhcCCcC---cccccccccccccccccCceeehhhccccchhhcCC-----CCCC
Confidence            2333343 333444445778889977643211   1111111222222233221     112333344440     0000


Q ss_pred             ccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCc
Q 002564          347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA  426 (907)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~  426 (907)
                      ....+.                     .|.                                                ..
T Consensus       410 s~~~~~---------------------~p~------------------------------------------------p~  420 (1062)
T KOG1912|consen  410 STCVRM---------------------RPM------------------------------------------------PE  420 (1062)
T ss_pred             ceeeec---------------------ccC------------------------------------------------cc
Confidence            000000                     000                                                00


Q ss_pred             eEEEEEcCCC-------CEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE-------
Q 002564          427 VKACTISACG-------NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-------  492 (907)
Q Consensus       427 v~~~~~s~~g-------~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-------  492 (907)
                      .+-....|.|       ..+++|+++|+|.++|+.++.....+.        .|.+.|.++.|.....++-.+       
T Consensus       421 ~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs--------vht~~VkgleW~g~sslvSfsys~~n~~  492 (1062)
T KOG1912|consen  421 LTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS--------VHTSLVKGLEWLGNSSLVSFSYSHVNSA  492 (1062)
T ss_pred             cceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc--------ccccceeeeeeccceeEEEeeecccccc
Confidence            1111111111       368999999999999999999988885        899999999998765544222       


Q ss_pred             --ecCCeEEEEECCCCceeeee--e--cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc
Q 002564          493 --GYHGDIKVWDFKGRDLKSRW--E--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (907)
Q Consensus       493 --~~dg~i~iwd~~~~~~~~~~--~--~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~  547 (907)
                        +.-+.+.+-|+.+|..+...  +  ...+|..+..|..++|+++...+.-+.+||+++.
T Consensus       493 sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  493 SGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             ccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence              22245778888888654433  2  2389999999999999999999999999999664

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=3.1e-16  Score=171.50  Aligned_cols=290  Identities=19%  Similarity=0.325  Sum_probs=208.1

Q ss_pred             CEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecc--cccCeEEEEEecC--CCEEEEEcCCCcEEEEEccCCC
Q 002564          226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD  301 (907)
Q Consensus       226 ~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~  301 (907)
                      +...+.|+|-.. .+++++..-.|+|||.+.++.+..+..+  ....|+.+.+..+  ..++++|+.||.||||+--...
T Consensus      1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            456778888777 7888887789999999999998877632  2457999999874  4589999999999999633222


Q ss_pred             -CCcceeEeccCCC-------CCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564          302 -GDPRLLRFRSGHS-------APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (907)
Q Consensus       302 -~~~~~~~~~~~h~-------~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (907)
                       +.++++....+-+       +.-.-+.|.....+|+++|.-+.|++||.........+..                   
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~------------------- 1205 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY------------------- 1205 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc-------------------
Confidence             4445554333221       1123455666555777777788899999876655444322                   


Q ss_pred             CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 002564          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFN  452 (907)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~i~d  452 (907)
                                                                      +....++++.-+. .|+.+++|..||.|++||
T Consensus      1206 ------------------------------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD 1237 (1387)
T KOG1517|consen 1206 ------------------------------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYD 1237 (1387)
T ss_pred             ------------------------------------------------CCCccceeecccccCCceEEEeecCCceEEee
Confidence                                                            1124455554433 369999999999999999


Q ss_pred             CCCCccceeeeccccccccCcCCc--EEEEEEcCCCC-EEEEEecCCeEEEEECCCCceeeee------ecCcceeEEEE
Q 002564          453 LQSGISRGSYLDMSERSNYAHNGE--VVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRW------EVGCSLVKIVY  523 (907)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~i~~~~~  523 (907)
                      ...........     ....|...  |..+.+-+.|- .|++|+.||.|++||+........+      +.++..+++..
T Consensus      1238 ~R~a~~ds~v~-----~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1238 RRMAPPDSLVC-----VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred             cccCCccccce-----eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeee
Confidence            87654421111     11478776  99999988764 5999999999999999874222222      22346999999


Q ss_pred             eeCCCEEEEEeCCCeEEEEEcccceeEEEeec-------CCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCc
Q 002564          524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR  590 (907)
Q Consensus       524 s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~-------h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~  590 (907)
                      |++...+|+|+. +.|.||++...+ +..++.       ..+.+.+++|+|.--.||.|+.|.+|.||....++
T Consensus      1313 H~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1313 HEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            999999999998 999999987433 222221       23568999999999899999999999999876553

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=7.6e-15  Score=143.37  Aligned_cols=272  Identities=15%  Similarity=0.249  Sum_probs=199.6

Q ss_pred             cCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe---EEEEeCCee--EEEEcccccceEE
Q 002564           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ--VATWSRHSAKVNL   98 (907)
Q Consensus        24 ~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---I~vw~~~~~--~~~~~~h~~~V~~   98 (907)
                      .++..+++.+.-.-.++|++......+-.......|.-+-|+.....++.-.+   +++.+..+.  +..+. -..+|.+
T Consensus        14 Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~   92 (391)
T KOG2110|consen   14 NQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILA   92 (391)
T ss_pred             ccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEE
Confidence            34455555555566789998876554333444566778888888777776433   777765443  33322 2357889


Q ss_pred             EEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecC-CCcccEEEEcCCCCCCEEEE--EecCCcEEEEecCCCeEEE
Q 002564           99 LLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD-DKFTPTCIMHPDTYLNKVIV--GSQEGSLQLWNISTKKKLY  175 (907)
Q Consensus        99 l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~l~~--~s~dg~i~iwd~~~~~~~~  175 (907)
                      +..+.++|+.+-.+. |.|||+.+.+.    +.++... ......|+++|+....+++.  ....|.|.+||..+-+.+.
T Consensus        93 VrmNr~RLvV~Lee~-IyIydI~~Mkl----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~  167 (391)
T KOG2110|consen   93 VRMNRKRLVVCLEES-IYIYDIKDMKL----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN  167 (391)
T ss_pred             EEEccceEEEEEccc-EEEEeccccee----ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee
Confidence            999999999998554 99999999988    6666544 44555788888775457775  3346899999999999999


Q ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEecCCe-EEEEEccCCceEEEEeecC-CCCEEEEEEecCCCCEEEEEeCCCcEEEEE
Q 002564          176 EFKGWGSSISSCVSSPALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWN  253 (907)
Q Consensus       176 ~~~~h~~~I~~l~~sp~~~~la~g~~dg~-I~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd  253 (907)
                      .+..|.+++-|++|+++|.+||+++..|+ |||+.+.+|+.+..|+.+. ...|.+++|+||++ +|++.+..++|.+|.
T Consensus       168 ~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFK  246 (391)
T KOG2110|consen  168 TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFK  246 (391)
T ss_pred             EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEE
Confidence            99999999999999999999999999987 6899999999999998653 24789999999999 888888999999998


Q ss_pred             CCCceee-------------------------------------eeeeccccc--CeEEEEEecCCCEEEEEcCCCcEEE
Q 002564          254 LEKRRLQ-------------------------------------SVIREAHDN--AIISLHFFANEPVLMSASADNSIKM  294 (907)
Q Consensus       254 ~~~~~~~-------------------------------------~~~~~~h~~--~V~~l~~~~~~~~l~s~~~d~~i~v  294 (907)
                      ++.....                                     ...+....+  .+..+.-.+..+++..++.||.+..
T Consensus       247 L~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~  326 (391)
T KOG2110|consen  247 LEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYS  326 (391)
T ss_pred             ecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEE
Confidence            8643100                                     000000011  2233332346778889999999999


Q ss_pred             EEccCCCC
Q 002564          295 WIFDTTDG  302 (907)
Q Consensus       295 w~~~~~~~  302 (907)
                      |.++..++
T Consensus       327 y~l~~~~g  334 (391)
T KOG2110|consen  327 YRLPPKEG  334 (391)
T ss_pred             EEcCCCCC
Confidence            99887643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=2e-16  Score=173.01  Aligned_cols=308  Identities=15%  Similarity=0.227  Sum_probs=215.4

Q ss_pred             CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCC---CCCEEEEE
Q 002564          112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCV  188 (907)
Q Consensus       112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h---~~~I~~l~  188 (907)
                      +..|..||......          .......+.+||-.  ..++++...-.|++||.+.++.+..|..+   ...|+.+.
T Consensus      1049 t~~i~~W~~~~~~~----------n~~~pk~~~~hpf~--p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~ 1116 (1387)
T KOG1517|consen 1049 TNPIGNWDQKFMTG----------NNQPPKTLKFHPFE--PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLE 1116 (1387)
T ss_pred             cccccchHHHHHhc----------CCCCCceeeecCCC--ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceee
Confidence            45566776543222          22344567788877  77888887788999999999998888654   46788888


Q ss_pred             EcC--CCCEEEEEecCCeEEEEEccCC-----ceEEEEee------cCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 002564          189 SSP--ALDVVAVGCSDGKIHVHNVRYD-----EELVTFTH------SMRGAVTALAFSSDGQPLLASGASSGVISIWNLE  255 (907)
Q Consensus       189 ~sp--~~~~la~g~~dg~I~iwd~~~~-----~~~~~~~~------~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~  255 (907)
                      +-.  |..++.+|+.||.|+||+--..     +.+..+..      ...+.-.-+.|..... +|.+++.-..|+|||..
T Consensus      1117 liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1117 LINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred             eecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecc
Confidence            765  4458999999999999974322     22222221      1011113456666655 44555557899999999


Q ss_pred             CceeeeeeecccccCeEEEEEec-CCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCC--CeEEEEecCCC-EEEE
Q 002564          256 KRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGR-HILS  331 (907)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~g~-~l~s  331 (907)
                      .......+..+....|+++.-.. .|+.++.|..||+|++||.+..... ..+...+.|...  |..+.+.+.|- .|++
T Consensus      1196 ~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvS 1274 (1387)
T KOG1517|consen 1196 KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVS 1274 (1387)
T ss_pred             cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceee
Confidence            99999888867777888887654 4689999999999999998876543 345556678877  99999988654 4999


Q ss_pred             EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (907)
Q Consensus       332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~  411 (907)
                      |+.||.|++||++.......+.                                                          
T Consensus      1275 gs~~G~I~~~DlR~~~~e~~~~---------------------------------------------------------- 1296 (1387)
T KOG1517|consen 1275 GSQDGDIQLLDLRMSSKETFLT---------------------------------------------------------- 1296 (1387)
T ss_pred             eccCCeEEEEecccCcccccce----------------------------------------------------------
Confidence            9999999999987531100000                                                          


Q ss_pred             ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEE
Q 002564          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (907)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  491 (907)
                                       -                  +.-|                    ...+..+++.+++....+++
T Consensus      1297 -----------------i------------------v~~~--------------------~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1297 -----------------I------------------VAHW--------------------EYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred             -----------------e------------------eecc--------------------ccCccceeeeeccCCCeeee
Confidence                             0                  0000                    11224778888888888888


Q ss_pred             EecCCeEEEEECCCCceeeeeec-------CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc
Q 002564          492 AGYHGDIKVWDFKGRDLKSRWEV-------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (907)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~~~-------~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~  547 (907)
                      |+. +.|+||++...++......       ...+.|++|||-.-++|+|+.|..|.||.....
T Consensus      1322 Gs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1322 GSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            887 8888888765433222111       167799999999999999999999999987654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=1.5e-16  Score=149.48  Aligned_cols=296  Identities=18%  Similarity=0.219  Sum_probs=202.8

Q ss_pred             CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecC-------CcEEEEecCCC---------eEEE
Q 002564          112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-------GSLQLWNISTK---------KKLY  175 (907)
Q Consensus       112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~d-------g~i~iwd~~~~---------~~~~  175 (907)
                      |+.|.+-+++.+.-.. ..+.+..+.+.+...+-+|... ..|+++..+       -...||.+...         +++.
T Consensus        39 dNqVhll~~d~e~s~l-~skvf~h~agEvw~las~P~d~-~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~  116 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSEL-LSKVFFHHAGEVWDLASSPFDQ-RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA  116 (370)
T ss_pred             cceeEEEEecCccchh-hhhhhhcCCcceehhhcCCCCC-ceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence            6777777776544311 1244555677778888888773 455555431       23678988543         2333


Q ss_pred             EEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCce-EEEEee----cCCCCEEEEEEec--CCCCEEEEEeCCC
Q 002564          176 EFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE-LVTFTH----SMRGAVTALAFSS--DGQPLLASGASSG  247 (907)
Q Consensus       176 ~~~-~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~-~~~~~~----~~~~~v~~l~fs~--dg~~~l~sg~~dg  247 (907)
                      .+. .+-+.|.|+.|.|+++.+|+-. |..|.+|++..+.. +..+..    .+....++-+|+|  ||. .+++ ..|+
T Consensus       117 ~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~t-t~d~  193 (370)
T KOG1007|consen  117 SLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVAT-TSDS  193 (370)
T ss_pred             cCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEE-eCCC
Confidence            443 3456899999999999988776 78899999997765 333332    2345678889999  555 4554 4589


Q ss_pred             cEEEEECCCceeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-C
Q 002564          248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N  325 (907)
Q Consensus       248 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~  325 (907)
                      ++..||+++.+....+..+|...|..+.|.|+.+ +|++|+.||.|++||.+..+   ..+..+.+|...|.+++|+| .
T Consensus       194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCcc
Confidence            9999999999999999889999999999999875 78899999999999987654   45778889999999999999 5


Q ss_pred             CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEE
Q 002564          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (907)
Q Consensus       326 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w  405 (907)
                      .+++++++.|..|.+|....-.....+....-..   .........+.                                
T Consensus       271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~des---e~e~~dseer~--------------------------------  315 (370)
T KOG1007|consen  271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDES---ESEDEDSEERV--------------------------------  315 (370)
T ss_pred             ceEEEecCCCceeEEEeccccccccccccccccc---cCcchhhHHhc--------------------------------
Confidence            6788999999999999765432211111000000   00000000000                                


Q ss_pred             EeeeceecceeeecCCCCCCceEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 002564          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQ  454 (907)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~i~d~~  454 (907)
                          +.+....+.....|...|.+++||.-..++ ++-+.||++.|=++.
T Consensus       316 ----kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  316 ----KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ----ccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                011123344555788999999999877665 556789988876654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2e-15  Score=138.42  Aligned_cols=285  Identities=15%  Similarity=0.173  Sum_probs=204.2

Q ss_pred             CeEEEEEecCCCEEEEEcCCCcEEEEEccCCC------CCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEc
Q 002564          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTD------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (907)
Q Consensus       270 ~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~------~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~  343 (907)
                      .|.+-+++|.+++|+.|..+|.|.+..+....      .....+....+|.+++..++|+  ..+|++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            45666889999999999999999999876431      1122334457999999999999  34677776 599999987


Q ss_pred             eecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCC
Q 002564          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (907)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~  423 (907)
                      +......                                                 +.-++|.........      .-.
T Consensus        89 ~E~~es~-------------------------------------------------~~K~lwe~~~P~~~~------~~e  113 (325)
T KOG0649|consen   89 NEEEESL-------------------------------------------------ATKRLWEVKIPMQVD------AVE  113 (325)
T ss_pred             hhhhhhc-------------------------------------------------cchhhhhhcCccccC------ccc
Confidence            5433211                                                 111122222111000      011


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (907)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  503 (907)
                      -..|.++.+.|..+-++.+..|+.++.||+.+|+....+.        +|.+.|.+++--..+..+++|+.||++|+||.
T Consensus       114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~  185 (325)
T KOG0649|consen  114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDT  185 (325)
T ss_pred             CCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--------CCcceeeeeeecccCcceeecCCCccEEEEec
Confidence            2568899999998888888899999999999999999996        99999999998666667999999999999999


Q ss_pred             CCCceeeeeecC-----------cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEE
Q 002564          504 KGRDLKSRWEVG-----------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL  572 (907)
Q Consensus       504 ~~~~~~~~~~~~-----------~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l  572 (907)
                      ++++.+..+..-           ..|.+  ..-+...+++|+ ...+.+|.+.+.++...|. -..++..+.|-.|  .+
T Consensus       186 kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~v  259 (325)
T KOG0649|consen  186 KTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CV  259 (325)
T ss_pred             cccceeEEeccccChhhcCcccCceeEE--EeccCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeecc--eE
Confidence            999988877542           22333  344567777765 4579999999988887776 5567888889654  68


Q ss_pred             EEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCCCceEEEEEecCCeEEEee
Q 002564          573 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       573 ~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~  627 (907)
                      ++++..+.|.-|.+. |.+-....+.++ +++..|+..--.++++....+.+.+..
T Consensus       260 l~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  260 LIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             EEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence            888888899999875 666566665554 778887755444444433333466654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.74  E-value=4.6e-15  Score=157.71  Aligned_cols=327  Identities=13%  Similarity=0.093  Sum_probs=209.1

Q ss_pred             EEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEE
Q 002564          107 LSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISS  186 (907)
Q Consensus       107 ~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~  186 (907)
                      ++-..+|.|.|.|..+.+.    +.++......-....++|++  +++++++.||.|.++|+.+++.+.+++. .....+
T Consensus        10 V~~~~~~~v~viD~~t~~~----~~~i~~~~~~h~~~~~s~Dg--r~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~   82 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKV----VARIPTGGAPHAGLKFSPDG--RYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRG   82 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SE----EEEEE-STTEEEEEE-TT-S--SEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEE
T ss_pred             EEecCCCEEEEEECCCCeE----EEEEcCCCCceeEEEecCCC--CEEEEEcCCCeEEEEECCcccEEEEEec-CCCcce
Confidence            4455689999999999888    88887665554556789999  8899999999999999999999999987 556788


Q ss_pred             EEEcCCCCEEEEEe-cCCeEEEEEccCCceEEEEeec------CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564          187 CVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHS------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (907)
Q Consensus       187 l~~sp~~~~la~g~-~dg~I~iwd~~~~~~~~~~~~~------~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~  259 (907)
                      +++|+||++++++. ..+.+.++|.++.+.+..+...      ....+.++..++....++++--..+.|.+-|....+.
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~  162 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN  162 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence            99999999998775 5799999999999999887643      1346788888888874444444568898889877654


Q ss_pred             eeeeecccccCeEEEEEecCCCEEEEE-cCCCcEEEEEccCCCCCcceeEec----cCCCCCCeEEEEecCCCEEEEEeC
Q 002564          260 QSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYANGRHILSAGQ  334 (907)
Q Consensus       260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~g~~l~s~~~  334 (907)
                      ................|.|++++++.+ ..++.|-++|....    ......    ..|..+...+ .+|....+...+.
T Consensus       163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~----k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~  237 (369)
T PF02239_consen  163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG----KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSG  237 (369)
T ss_dssp             EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT----EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEB
T ss_pred             cceeeecccccccccccCcccceeeecccccceeEEEeeccc----eEEEEeeccccccccccccc-cCCCcceEEeecc
Confidence            432222345567889999999987664 55678888876543    222111    1233332222 2232211111111


Q ss_pred             CCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecc
Q 002564          335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE  414 (907)
Q Consensus       335 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~  414 (907)
                      .                                                                               
T Consensus       238 ~-------------------------------------------------------------------------------  238 (369)
T PF02239_consen  238 L-------------------------------------------------------------------------------  238 (369)
T ss_dssp             S-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             eeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE--
Q 002564          415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA--  492 (907)
Q Consensus       415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~--  492 (907)
                                           +...+..-..+.+.+|+..+.+....+.        ...+. ..+..+|+++++.+.  
T Consensus       239 ---------------------~~~~~~~ig~~~v~v~d~~~wkvv~~I~--------~~G~g-lFi~thP~s~~vwvd~~  288 (369)
T PF02239_consen  239 ---------------------GYFAIPLIGTDPVSVHDDYAWKVVKTIP--------TQGGG-LFIKTHPDSRYVWVDTF  288 (369)
T ss_dssp             ---------------------SSSEEEEEE--TTT-STTTBTSEEEEEE---------SSSS---EE--TT-SEEEEE-T
T ss_pred             ---------------------cceecccccCCccccchhhcCeEEEEEE--------CCCCc-ceeecCCCCccEEeecc
Confidence                                 1111111112234456666777777664        33444 778889999999988  


Q ss_pred             --ecCCeEEEEECCCCceeeeeecCc--ceeEEEEeeCCCEEEEEeC--CCeEEEEEcccceeEEEee
Q 002564          493 --GYHGDIKVWDFKGRDLKSRWEVGC--SLVKIVYHRVNGLLATVAD--DLVIRLFDVVALRMVRKFE  554 (907)
Q Consensus       493 --~~dg~i~iwd~~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~~~--dg~I~v~d~~~~~~~~~~~  554 (907)
                        ...+.|.++|..+.+....+....  .+..+.|+++|+.+.++..  ++.|.+||..+.+.+.++.
T Consensus       289 ~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  289 LNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             T-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence              455899999999998887776554  4999999999997666544  3479999999999998887

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=4.1e-16  Score=158.79  Aligned_cols=225  Identities=19%  Similarity=0.284  Sum_probs=160.9

Q ss_pred             cCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEec--CCCEEEEEcCCCcEEEEEccC
Q 002564          222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDT  299 (907)
Q Consensus       222 ~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~i~vw~~~~  299 (907)
                      +|.+.|.|+.|+.||. +|++|+.|-.+.|||.-..++++.+..+|...|.++.|.|  +.+++++|..|..|+++|++.
T Consensus        48 GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             cccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            3589999999999999 9999999999999999999999999999999999999999  456899999999999999985


Q ss_pred             CCC------CcceeEeccCCCCCCeEEEEecCC-CEEEEEeCCCCEEEEEceecccceeec-hhhhhHHHhhccchhhhc
Q 002564          300 TDG------DPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELS-QRHVAKRARKLKMKEEEL  371 (907)
Q Consensus       300 ~~~------~~~~~~~~~~h~~~v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  371 (907)
                      ..+      .....+....|...|..++..|++ ..+.+++.||+++-+|++.......-. .+..              
T Consensus       127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~--------------  192 (758)
T KOG1310|consen  127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI--------------  192 (758)
T ss_pred             ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH--------------
Confidence            322      223445567899999999999987 788999999999999998643221100 0000              


Q ss_pred             ccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC-CEEEEEeCCCcEEE
Q 002564          372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIER  450 (907)
Q Consensus       372 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~i  450 (907)
                                                                   +......--...++.++|.. .++++|+++--.++
T Consensus       193 ---------------------------------------------l~ny~~~lielk~ltisp~rp~~laVGgsdpfarL  227 (758)
T KOG1310|consen  193 ---------------------------------------------LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARL  227 (758)
T ss_pred             ---------------------------------------------HHHhchhhheeeeeeecCCCCceEEecCCCchhhh
Confidence                                                         00000011456788888865 67899999999999


Q ss_pred             EeCCC--------Cc----------cceeeeccccccccC-cC---CcEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 002564          451 FNLQS--------GI----------SRGSYLDMSERSNYA-HN---GEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  506 (907)
Q Consensus       451 ~d~~~--------~~----------~~~~~~~~~~~~~~~-h~---~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  506 (907)
                      ||...        +.          .+..|.........+ ..   ..++-++|+|+|.-|+..-....|+++|+..+
T Consensus       228 YD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  228 YDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             hhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence            99421        11          011111000000011 00   12567889999977766666678899987654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=2.5e-16  Score=147.94  Aligned_cols=251  Identities=16%  Similarity=0.225  Sum_probs=190.5

Q ss_pred             EcccccceEEEE--e-eCCEEEEEecC-------CcEEEEecCCCCcc-----ccceeeEec-CCCcccEEEEcCCCCCC
Q 002564           89 WSRHSAKVNLLL--L-FGEHILSIDID-------GNMFIWAFKGIEEN-----LAPVGHVKL-DDKFTPTCIMHPDTYLN  152 (907)
Q Consensus        89 ~~~h~~~V~~l~--~-~g~~l~s~~~d-------g~v~vWd~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~p~~~~~  152 (907)
                      +..|.+.|..++  | +...|+++-.+       -.+.||.+......     ...+..+.. +-+.+.++.|.|++  .
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns--~  136 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS--D  136 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC--C
Confidence            777889999988  3 56677776542       13789998764432     112333321 22345666799988  7


Q ss_pred             EEEEEecCCcEEEEecCCCeE-EEEEc-----CCCCCEEEEEEcC--CCCEEEEEecCCeEEEEEccCCceEEEEeecCC
Q 002564          153 KVIVGSQEGSLQLWNISTKKK-LYEFK-----GWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR  224 (907)
Q Consensus       153 ~l~~~s~dg~i~iwd~~~~~~-~~~~~-----~h~~~I~~l~~sp--~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~  224 (907)
                      ++++-. +..|.+|++..+.. +..+.     ++....++-+|+|  +++.+++.+ |+++..||+++.+....+...|.
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHg  214 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHG  214 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhc
Confidence            888775 77899999987765 44332     3566778889999  677777755 68999999999999999988888


Q ss_pred             CCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeEEEEEecC-CCEEEEEcCCCcEEEEEccCCCC
Q 002564          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDG  302 (907)
Q Consensus       225 ~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~i~vw~~~~~~~  302 (907)
                      ..|..+.|+|+.+++|++|+.||.|++||.+.- .++..+. +|...|.++.|+|. .++++++|.|..|.+|....-..
T Consensus       215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS  293 (370)
T KOG1007|consen  215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS  293 (370)
T ss_pred             ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence            899999999999999999999999999999865 4566666 99999999999995 45888999999999995432210


Q ss_pred             C-------------------------cceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEce
Q 002564          303 D-------------------------PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       303 ~-------------------------~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~  344 (907)
                      .                         -..+.++..|...|.+++|+. |.=.+++-+.||.+.|=++.
T Consensus       294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            0                         112346678999999999998 66667888999999886653

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.74  E-value=7.2e-16  Score=160.07  Aligned_cols=488  Identities=14%  Similarity=0.102  Sum_probs=280.2

Q ss_pred             cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (907)
Q Consensus       324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  403 (907)
                      |...+++....||.+++|+...++...++...                                      ..-.+.+...
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~--------------------------------------~~~s~t~~~~   44 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI--------------------------------------ASLSGTCTYT   44 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccc--------------------------------------hhccCcceeE
Confidence            34568999999999999999988877765431                                      1112334455


Q ss_pred             EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEc
Q 002564          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  483 (907)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  483 (907)
                      .|.+.-..........       -.....+.+-..++.|...|.|.+|+...|+....+..      ..|.+.|.++.++
T Consensus        45 ~w~L~~~~s~~k~~~~-------~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st------~~h~~~v~~~~~~  111 (541)
T KOG4547|consen   45 KWGLSADYSPMKWLSL-------EKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLST------DKHYGNVNEILDA  111 (541)
T ss_pred             EEEEEeccchHHHHhH-------HHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEec------CCCCCcceeeecc
Confidence            5654322111111100       01112234556789999999999999999999888863      5799999999999


Q ss_pred             CCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeee
Q 002564          484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD  562 (907)
Q Consensus       484 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~  562 (907)
                      .+-..|.+++.|+.+..|+...++.++.+... ..+.+++++||+..+++++  +.|++||+++++.+..|.||.++|.+
T Consensus       112 ~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t  189 (541)
T KOG4547|consen  112 QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRT  189 (541)
T ss_pred             cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEE
Confidence            99999999999999999999999999988766 6788999999999999986  78999999999999999999999999


Q ss_pred             EEECCC-----CcEEE-EEeCCCcEEEEEcCC----CceeeEeeeCCc-eEEEEE-CCCCc---eEEEEEecCCeEEEee
Q 002564          563 FCFSED-----GKWLL-SSGMDGSLRIWDVIL----ARQIDAIHVDVS-ITALSL-SPNMD---VLATAHVDQNGVYLWV  627 (907)
Q Consensus       563 l~fspd-----g~~l~-s~s~Dg~I~vwd~~~----~~~~~~~~~~~~-v~~l~~-spdg~---~lat~~~d~~~i~lW~  627 (907)
                      +.|.-+     |.++. ++..+..+.+|-+..    +.....+..+.. ++.=.+ ..|+.   .+|+...++  +..|.
T Consensus       190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~~~l~lAst~~~g--~v~~~  267 (541)
T KOG4547|consen  190 LSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGTIPLVLASTLIPG--IVHLK  267 (541)
T ss_pred             EEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEeccccccccccceEEeeeccCc--eeeec
Confidence            999877     66655 445667788887654    233344444332 322222 23443   244444443  55554


Q ss_pred             cccccccCCCCccCCCCCcceeecCCCccCCCCccCC--C-CCCCCCccCCCCCCCCCCC----CCcccc--ccCceeec
Q 002564          628 NRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDE--N-SSQPDVHRTDRVPKDSFGL----PTFKQQ--IPDLVTLS  698 (907)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~l~tls  698 (907)
                      ....-.-...  .+...........|+.-...-..+.  . ..-.+ -....-......+    ...+..  ....+++.
T Consensus       268 ~~nl~~l~~~--~~~kv~~~~~~~s~g~~a~~~~~~~~~~~l~~g~-~~~ps~~~vsln~~~~l~l~~R~l~~~~~~~~~  344 (541)
T KOG4547|consen  268 LSNLIILLHK--KIVKVNGYNADSSKGFLAALFGIDKAHALLAYGS-LVNPSFVRVSLNLGQKLHLMDRDLSGSGKLKLV  344 (541)
T ss_pred             cccHHHHhcC--ccccccceeeecccchhhhhcccchhhhhhhccc-ccCchhhhhhhhhcchhhhhhhhccCCccccee
Confidence            3221111110  0000000011111210000000000  0 00000 0000000000000    000000  00011111


Q ss_pred             CCchhhhhhccchHHHhhhCCCC-CCCCCCCCCCccccCCCCCCcccccCCCCCCcccchhhhccCCCC--CCC-CccHH
Q 002564          699 LLPKSQWQSLINLDIIKARNKPI-EPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTK--PDI-PVSQF  774 (907)
Q Consensus       699 ~~p~~~~~~l~~l~~i~~r~kp~-~~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~  774 (907)
                      ..-...-|...|-+.  +=+.|. +.+++|.-.  -||+... ..  +.+...+.  .-....-...+.  ... ..-.+
T Consensus       345 ~~k~~~rqv~~n~~~--k~~~~~~~q~~~p~~~--~l~v~~~-~g--~iEv~~ea--rl~~l~i~~~~~~~k~~~~tll~  415 (541)
T KOG4547|consen  345 TSKEGKRQVVLNSVA--KLGEAEVIQEEPPLTE--DLPVLTK-GG--DIEVSTEA--RLSALDINLTSNADKSDESTLLA  415 (541)
T ss_pred             eeecccceeecchhh--hhcchhhhcccCcchh--cchhhhc-CC--cceeeehh--hhhhcccccccccchhhhhccch
Confidence            110111111111000  000110 000000000  0111110 00  00000000  000000000000  011 11245


Q ss_pred             HHHHhhccccCChHHHHHHHHhCCCCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHhc-CCCHHhHHHHH
Q 002564          775 IQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISC-RNNFEFIQAVI  853 (907)
Q Consensus       775 ~~~l~~~~~~~~~~~~~~~l~~~~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  853 (907)
                      ...|.++...+++.-.-++|.+++|-.|+.++-++.+               +.+..|+..+..++++ ..+-.....|+
T Consensus       416 s~~l~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~---------------st~~pll~ela~rlq~~~~~~~~~l~w~  480 (541)
T KOG4547|consen  416 SVSLNQALSSRDSHILTDVLISRDEELIKSTVLRMEE---------------STAPPLLEELAPRLQSRASRGRILLVWL  480 (541)
T ss_pred             hhhhhhhhcccccccchhhhccCChHHHHHHHhhcCh---------------hhccchhccchhhhccccccCchhhhhh
Confidence            6777888889999999999999999999999999876               7788899999999999 77888899999


Q ss_pred             HHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002564          854 RLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQ  893 (907)
Q Consensus       854 ~~~l~~h~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  893 (907)
                      +..|-.|+.+|++.|.....+..+.+.-.+..+.+..++.
T Consensus       481 k~~l~~h~~yl~sv~~~~~~l~~~~~~~~~~ae~~~~~la  520 (541)
T KOG4547|consen  481 KTRLTSHNSYLSSVPDQLETLSGKMQKDLRTAEQLGHLLA  520 (541)
T ss_pred             hhhhhcccceeecCcchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999987666677666666666666665543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.73  E-value=8.5e-16  Score=167.02  Aligned_cols=284  Identities=14%  Similarity=0.179  Sum_probs=200.6

Q ss_pred             CcEEEEECCCc-eeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCC--cceeEeccCCCCCCeEEEE
Q 002564          247 GVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPPLCIRF  322 (907)
Q Consensus       247 g~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~--~~~~~~~~~h~~~v~~i~~  322 (907)
                      +.+.+|++... .+...+  .-...|.++.|+|.. .+++.|..+|.|.+||+......  ..+-.....|..+++.+.|
T Consensus       222 ~~~~vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVL--ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCCceEEE--ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            47999999887 333333  367899999999955 57778888999999999876652  2333444578999999999


Q ss_pred             ecCC--CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCc
Q 002564          323 YANG--RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA  400 (907)
Q Consensus       323 ~~~g--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  400 (907)
                      ..+.  .-+++++.||.|..|+++.-....+........                                         
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~-----------------------------------------  338 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK-----------------------------------------  338 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhccccccc-----------------------------------------
Confidence            8744  459999999999999876544322211100000                                         


Q ss_pred             eEEEEEeeeceecceeeecCCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEE
Q 002564          401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG  479 (907)
Q Consensus       401 ~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  479 (907)
                                    + ..........++++.|.+. -+.+++|+..|.|..-+-...................|.+.|..
T Consensus       339 --------------~-~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~  403 (555)
T KOG1587|consen  339 --------------H-KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYA  403 (555)
T ss_pred             --------------c-cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEe
Confidence                          0 0000012256788888875 47799999999998854443332221111111122478999999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEECC-CCceeeeeecC-cceeEEEEeeCC-CEEEEEeCCCeEEEEEcccc--eeEEEee
Q 002564          480 VACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVN-GLLATVADDLVIRLFDVVAL--RMVRKFE  554 (907)
Q Consensus       480 l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~i~~~~~s~~~-~~la~~~~dg~I~v~d~~~~--~~~~~~~  554 (907)
                      +.++|-+..++..+.|.++++|... ...++..+... ..+++++|||-. ..++++..||.+.+||+...  .++.+..
T Consensus       404 v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~  483 (555)
T KOG1587|consen  404 VSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK  483 (555)
T ss_pred             eecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence            9999988665555559999999987 56666666555 559999999965 47788888999999999654  4455555


Q ss_pred             cCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCC
Q 002564          555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (907)
Q Consensus       555 ~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~  588 (907)
                      -+....+.+.|+++|+.|+.|...|++.+|++..
T Consensus       484 ~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  484 VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            5566677888999999999999999999999964

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.73  E-value=4.3e-16  Score=158.20  Aligned_cols=263  Identities=19%  Similarity=0.239  Sum_probs=187.8

Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEec-------CCCEEEEEcCCCcEEEEE
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-------NEPVLMSASADNSIKMWI  296 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-------~~~~l~s~~~d~~i~vw~  296 (907)
                      ...+.|+.|+.+.. ++.+++ |..+.+|.-.+......+....+.-.+.+..-+       ....++.++.||.+.+.+
T Consensus        14 ~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   14 SEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ceeEEeecccccce-EEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            45677899998877 565555 555555543333222222211111111111111       223788888899888874


Q ss_pred             ccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCce
Q 002564          297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (907)
Q Consensus       297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  376 (907)
                      -     ..+..+....|.+.+.+-+|+|||.-|+++|.||.|++|+-...-. ..                         
T Consensus        92 k-----~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR-St-------------------------  140 (737)
T KOG1524|consen   92 K-----SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR-ST-------------------------  140 (737)
T ss_pred             c-----cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH-HH-------------------------
Confidence            2     2256677789999999999999999999999999999998432110 00                         


Q ss_pred             eEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 002564          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  456 (907)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~  456 (907)
                                                                 ......+|.|++|.|+.+.++.+ ..|++.+=.++..
T Consensus       141 -------------------------------------------l~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n  176 (737)
T KOG1524|consen  141 -------------------------------------------VVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAAN  176 (737)
T ss_pred             -------------------------------------------HhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccc
Confidence                                                       01234789999999998877664 5667777777766


Q ss_pred             ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC
Q 002564          457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD  536 (907)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d  536 (907)
                      ...-...        +|.+-|.++.|++.+.++++||.|-..++||-....+...-.+..+|++++|.|+ ..+++++.+
T Consensus       177 ~k~i~Wk--------AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n  247 (737)
T KOG1524|consen  177 SKIIRWR--------AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN  247 (737)
T ss_pred             cceeEEe--------ccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee
Confidence            6666554        9999999999999999999999999999999877777667777799999999998 666666542


Q ss_pred             CeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEE
Q 002564          537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  584 (907)
Q Consensus       537 g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vw  584 (907)
                       +.+           --....+.|..++||+||..++.|+..|.+.+=
T Consensus       248 -t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  248 -TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             -eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence             333           112345789999999999999999888877653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.72  E-value=9.8e-16  Score=150.22  Aligned_cols=209  Identities=17%  Similarity=0.235  Sum_probs=167.5

Q ss_pred             eEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCC-------eEEEEEcCCCCCEEEEEEcCC-CCEEEEEecCC
Q 002564          132 HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-------KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDG  203 (907)
Q Consensus       132 ~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~-------~~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg  203 (907)
                      .+.+|.+.+....|.|-.. +.||+||.|.+|.||.+..+       +++..+.+|...|--++|+|. .++|++++.|.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            3446777788888988775 78999999999999998654       457788999999999999996 46899999999


Q ss_pred             eEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeccccc-CeEEEEEecCCCE
Q 002564          204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN-AIISLHFFANEPV  282 (907)
Q Consensus       204 ~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~  282 (907)
                      .|.+||+.+|+.+.++.  |...|++++|+.||. ++++.+.|..|+|||.++++.+..-. +|.+ .-..+.|..++..
T Consensus       155 ~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~i  230 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD--HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGKI  230 (472)
T ss_pred             eEEEEeccCCceeeecC--CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCce
Confidence            99999999999999887  579999999999999 99999999999999999999998886 7765 4456778888884


Q ss_pred             EEEEc---CCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE-EeCCCCEEEEEceecc
Q 002564          283 LMSAS---ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS-AGQDRAFRLFSVIQDQ  347 (907)
Q Consensus       283 l~s~~---~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s-~~~dg~i~iwd~~~~~  347 (907)
                      +-||-   .++.+-+||-+.-... ..+..+ ..+..|.---|.+|...++. |-.|+.||.|.+..+.
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP-~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEP-IALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eeeccccccccceeccCcccccCc-ceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            44442   3788999976654432 233333 34556666667777777765 5579999999987665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2.6e-15  Score=149.54  Aligned_cols=193  Identities=21%  Similarity=0.266  Sum_probs=155.5

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCc
Q 002564          428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD  507 (907)
Q Consensus       428 ~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  507 (907)
                      .+++++.+|..+++|..||.+++|+..+........        .|.+.|.++.|+|||++|++.+.| ..+||+..++.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~--------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~  218 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI--------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA  218 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH--------hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence            789999999999999999999999988777666654        899999999999999999999999 99999999996


Q ss_pred             eeeeeec---CcceeEEEEeeCC-----CEEEEEeCCCeEEEEEccccee-----EEEeecCCCCeeeEEECCCCcEEEE
Q 002564          508 LKSRWEV---GCSLVKIVYHRVN-----GLLATVADDLVIRLFDVVALRM-----VRKFEGHTDRITDFCFSEDGKWLLS  574 (907)
Q Consensus       508 ~~~~~~~---~~~i~~~~~s~~~-----~~la~~~~dg~I~v~d~~~~~~-----~~~~~~h~~~I~~l~fspdg~~l~s  574 (907)
                      .+.....   +.....+.|+.|+     .+.+....-+.|+.||+..++-     .++...-...|++++.|+||++++.
T Consensus       219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence            6665542   3567778888877     3344444556788877765432     1222223357999999999999999


Q ss_pred             EeCCCcEEEEEcCCCceeeEeee-CC-ceEEEEECCCCceEEEEEecCCeEEEeeccc
Q 002564          575 SGMDGSLRIWDVILARQIDAIHV-DV-SITALSLSPNMDVLATAHVDQNGVYLWVNRC  630 (907)
Q Consensus       575 ~s~Dg~I~vwd~~~~~~~~~~~~-~~-~v~~l~~spdg~~lat~~~d~~~i~lW~~~~  630 (907)
                      |+.||.|-|++..+-+++..++. |. -|+.+.|+||.+++++.+.+. .+.|-.+..
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~-~~~v~~l~v  355 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN-EAAVTKLAV  355 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC-ceeEEEEee
Confidence            99999999999999888877754 33 399999999999999988887 477776543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=8.5e-15  Score=143.03  Aligned_cols=310  Identities=14%  Similarity=0.156  Sum_probs=209.9

Q ss_pred             EcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC--CeEEEEEccCCceEEEEeec
Q 002564          145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD--GKIHVHNVRYDEELVTFTHS  222 (907)
Q Consensus       145 ~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d--g~I~iwd~~~~~~~~~~~~~  222 (907)
                      |..+.  ..|.+|+.+| .++++.+...........+..|.-+-|+..  ++|..+.+  ..+++++.+.+..+..+...
T Consensus        13 ~Nqd~--~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp   87 (391)
T KOG2110|consen   13 FNQDS--TLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFP   87 (391)
T ss_pred             eccce--eEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecC
Confidence            45555  5678888888 788887765543333333556777778765  55555544  56999999999999888775


Q ss_pred             CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecc--cccCeEEEEEecCCCEEEEEc--CCCcEEEEEcc
Q 002564          223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFANEPVLMSAS--ADNSIKMWIFD  298 (907)
Q Consensus       223 ~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~~--~d~~i~vw~~~  298 (907)
                        .+|.++.++.+   .|+++-.+ .|.|||+++.++++++...  +...+.++.+++++.+++.-+  ..|.|.+||..
T Consensus        88 --t~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~  161 (391)
T KOG2110|consen   88 --TSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI  161 (391)
T ss_pred             --CceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc
Confidence              68999999765   35555443 4999999999999998844  566677777777777888644  36899999877


Q ss_pred             CCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC-EEEEEceecccceeechhhhhHHHhhccchhhhcccCcee
Q 002564          299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA-FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  377 (907)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  377 (907)
                      .-    +....+..|.+++.+++|+++|.+|++++..|+ ||+|.+.+++...++..+..                    
T Consensus       162 nl----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------------------  217 (391)
T KOG2110|consen  162 NL----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------------------  217 (391)
T ss_pred             cc----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------------------
Confidence            55    456677799999999999999999999999997 59999988877777644211                    


Q ss_pred             EeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 002564          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI  457 (907)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~  457 (907)
                                                                    ...|.+++|+|++++|++.++.++|++|.+....
T Consensus       218 ----------------------------------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  218 ----------------------------------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             ----------------------------------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence                                                          2678999999999999999999999999987654


Q ss_pred             cceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCc--ceeEEEEeeCCCEEEEEeC
Q 002564          458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC--SLVKIVYHRVNGLLATVAD  535 (907)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~~~  535 (907)
                      ... ...       .....-..-.++   +.+.+---.+.-.+||....-....+...+  .+..+.-.+....+.+++.
T Consensus       252 ~~~-~~~-------p~~~~~~~~~~s---k~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~  320 (391)
T KOG2110|consen  252 NNP-PES-------PTAGTSWFGKVS---KAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASY  320 (391)
T ss_pred             cCC-CCC-------CCCCCcccchhh---hhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEc
Confidence            111 000       000000000000   000000001112235544332223333323  3333333357789999999


Q ss_pred             CCeEEEEEccc
Q 002564          536 DLVIRLFDVVA  546 (907)
Q Consensus       536 dg~I~v~d~~~  546 (907)
                      ||.++.|.+.-
T Consensus       321 dG~~y~y~l~~  331 (391)
T KOG2110|consen  321 DGHLYSYRLPP  331 (391)
T ss_pred             CCeEEEEEcCC
Confidence            99999997753

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=2e-14  Score=137.77  Aligned_cols=227  Identities=16%  Similarity=0.288  Sum_probs=166.9

Q ss_pred             CCeEEEEEEeCCeEEEEEcCcceEEEecCCCC--cceEEEEEecCeEEEEEcCe--------EEEEeC--CeeEEEEccc
Q 002564           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLP--KKIRALASYRDYTFAAYGNH--------IAVVKR--AHQVATWSRH   92 (907)
Q Consensus        25 ~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~--~~I~~la~~~~~~~~a~g~~--------I~vw~~--~~~~~~~~~h   92 (907)
                      .+..-.++..+.-++||+++-.+.......+.  -.|.-|-|--+...++-|+.        +.|||-  .+++.++. -
T Consensus        15 QD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f   93 (346)
T KOG2111|consen   15 QDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-F   93 (346)
T ss_pred             cCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-e
Confidence            33333445557889999998644333222222  34444555555444444443        999994  33444433 4


Q ss_pred             ccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEE-EecCCcEEEEecCCC
Q 002564           93 SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIV-GSQEGSLQLWNISTK  171 (907)
Q Consensus        93 ~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~-~s~dg~i~iwd~~~~  171 (907)
                      ..+|.++....++|+.+- ++.|.||...+.-..   +..+.......-.|++.|......||. |-.-|.|+|-|+...
T Consensus        94 ~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~---l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~  169 (346)
T KOG2111|consen   94 NSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKL---LHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST  169 (346)
T ss_pred             ccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhh---eeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence            678999999999999997 889999999855442   444444333344777777764334443 556799999999766


Q ss_pred             eE--EEEEcCCCCCEEEEEEcCCCCEEEEEecCCe-EEEEEccCCceEEEEeecC-CCCEEEEEEecCCCCEEEEEeCCC
Q 002564          172 KK--LYEFKGWGSSISSCVSSPALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSG  247 (907)
Q Consensus       172 ~~--~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~-I~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~dg~~~l~sg~~dg  247 (907)
                      +.  ...+..|.+.|.|++.+.+|.++|+++..|+ |+|||..+|+.+..++.+. ...|++++|||++. +||+++..|
T Consensus       170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKg  248 (346)
T KOG2111|consen  170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKG  248 (346)
T ss_pred             CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCC
Confidence            65  5788999999999999999999999999987 7999999999999998653 35899999999999 999999999


Q ss_pred             cEEEEECCCc
Q 002564          248 VISIWNLEKR  257 (907)
Q Consensus       248 ~I~iwd~~~~  257 (907)
                      +|.|+.++..
T Consensus       249 TlHiF~l~~~  258 (346)
T KOG2111|consen  249 TLHIFSLRDT  258 (346)
T ss_pred             eEEEEEeecC
Confidence            9999998764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.4e-15  Score=148.46  Aligned_cols=307  Identities=14%  Similarity=0.138  Sum_probs=219.4

Q ss_pred             eEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecC------CCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCe
Q 002564          132 HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS------TKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGK  204 (907)
Q Consensus       132 ~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~------~~~~~~~~~-~h~~~I~~l~~sp~~~~la~g~~dg~  204 (907)
                      .+..|.+.+....|+.++  +.|++|+.|..+++|++.      +.+++.... .|.+.|.|++|......|.+|..+++
T Consensus        51 D~~~H~GCiNAlqFS~N~--~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHND--RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhccccceeeeccCC--eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            344577788888899998  899999999999999985      346666554 45689999999999999999999999


Q ss_pred             EEEEEccCCceEEEEeec-CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce-eeeeee-cccccCeEEEEEecCCC
Q 002564          205 IHVHNVRYDEELVTFTHS-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIR-EAHDNAIISLHFFANEP  281 (907)
Q Consensus       205 I~iwd~~~~~~~~~~~~~-~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~-~~~~~~-~~h~~~V~~l~~~~~~~  281 (907)
                      |...|+++.+.+..+... ..+.|+.+..+|-.. .+++.+.+|.|.+||.+... ....+. ........++.|+|..+
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence            999999999999888754 246899999999876 89999999999999998764 222221 13456778999999776


Q ss_pred             -EEEEEcCCCcEEEEEccCCCCCcceeEeccCC---CCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhh
Q 002564          282 -VLMSASADNSIKMWIFDTTDGDPRLLRFRSGH---SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV  357 (907)
Q Consensus       282 -~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h---~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  357 (907)
                       +|++.+..+-+.+||........-...-..+-   ...-.++.|+|+|..+++.-....-.+||+.+..+...      
T Consensus       208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~------  281 (609)
T KOG4227|consen  208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVL------  281 (609)
T ss_pred             eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeE------
Confidence             66778888899999987654211000011111   22236788999999998877666667777655332111      


Q ss_pred             hHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCC
Q 002564          358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  437 (907)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  437 (907)
                                          .++..+.               +.                    .+...+.+++|-.+-.
T Consensus       282 --------------------k~D~N~~---------------GY--------------------~N~~T~KS~~F~~D~~  306 (609)
T KOG4227|consen  282 --------------------KSDHNPN---------------GY--------------------CNIKTIKSMTFIDDYT  306 (609)
T ss_pred             --------------------eccCCCC---------------cc--------------------eeeeeeeeeeeeccee
Confidence                                0000000               00                    0113466677765544


Q ss_pred             EEEEEeCCCcEEEEeCCCCcccee---------------eeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          438 FAVLGTAGGWIERFNLQSGISRGS---------------YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (907)
Q Consensus       438 ~l~~g~~dg~i~i~d~~~~~~~~~---------------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  502 (907)
                       +++|+.+-.|++|.+.......-               +.......+.+|..-+..+.|+|...+|++.|....+++|.
T Consensus       307 -v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  307 -VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             -eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence             88898888999998754322211               11112224579999999999999999999999999999997


Q ss_pred             C
Q 002564          503 F  503 (907)
Q Consensus       503 ~  503 (907)
                      -
T Consensus       386 ~  386 (609)
T KOG4227|consen  386 D  386 (609)
T ss_pred             c
Confidence            4

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.71  E-value=1.6e-15  Score=168.82  Aligned_cols=267  Identities=17%  Similarity=0.211  Sum_probs=184.4

Q ss_pred             Ee-CCeeEEEEcccccceEEEEe---eCCEEEEEecCCcEEEEecCCCCcccc---ceeeEecCCCcccEEEEcCCCCCC
Q 002564           80 VK-RAHQVATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLA---PVGHVKLDDKFTPTCIMHPDTYLN  152 (907)
Q Consensus        80 w~-~~~~~~~~~~h~~~V~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~  152 (907)
                      |+ +|..++++..|+..|..++.   .+.+++|||.||+|++||...-.....   ...+............+-+.+  +
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~--~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG--D 1111 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC--C
Confidence            55 46778889999999998885   468999999999999999876443211   122222233444445566666  7


Q ss_pred             EEEEEecCCcEEEEecCCC--e-----EEEEEcCC-CCCEEE-EEEcCC-CC-EEEEEecCCeEEEEEccCCceEEEEee
Q 002564          153 KVIVGSQEGSLQLWNISTK--K-----KLYEFKGW-GSSISS-CVSSPA-LD-VVAVGCSDGKIHVHNVRYDEELVTFTH  221 (907)
Q Consensus       153 ~l~~~s~dg~i~iwd~~~~--~-----~~~~~~~h-~~~I~~-l~~sp~-~~-~la~g~~dg~I~iwd~~~~~~~~~~~~  221 (907)
                      .+|+++.||.|++.++.-.  +     +....+.+ .+.+.. -+|... +. .|+.+...+.|..||++......+++.
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence            8999999999999988652  1     11112222 233333 344332 33 788888889999999998776555542


Q ss_pred             c-CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC---EEEEEc--CCCcEEEE
Q 002564          222 S-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP---VLMSAS--ADNSIKMW  295 (907)
Q Consensus       222 ~-~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~~--~d~~i~vw  295 (907)
                      . ..|.|++++.+|.+. ++++|+..|.+.+||++-+.++......+..++..+..+|-.+   ..++++  ..+.|.+|
T Consensus      1192 ~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             CccccceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence            2 247899999999999 9999999999999999999999888877788899888877433   444444  47889999


Q ss_pred             EccCCCCCcceeEe---------cc------CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccc
Q 002564          296 IFDTTDGDPRLLRF---------RS------GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  349 (907)
Q Consensus       296 ~~~~~~~~~~~~~~---------~~------~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~  349 (907)
                      ++..+.....+...         ..      .+.-......+...+..+++|+.|..||.||.......
T Consensus      1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            98876432211111         00      11122233334445668899999999999998765443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.71  E-value=5.3e-15  Score=141.53  Aligned_cols=165  Identities=12%  Similarity=0.151  Sum_probs=138.1

Q ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc---eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEE
Q 002564          176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (907)
Q Consensus       176 ~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~---~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iw  252 (907)
                      .+.-...+|+|.+|++|+..+|++..+..|.||......   ...++..| ...|+.+.|+|... .+++|+.|..-++|
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H-d~~vtgvdWap~sn-rIvtcs~drnayVw   82 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH-DKIVTGVDWAPKSN-RIVTCSHDRNAYVW   82 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh-CcceeEEeecCCCC-ceeEccCCCCcccc
Confidence            344446799999999999999999999999999987554   55666665 88999999999997 79999999999999


Q ss_pred             EC-CCc--eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEE
Q 002564          253 NL-EKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (907)
Q Consensus       253 d~-~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l  329 (907)
                      .. ..+  +..-.+. .+....+++.|+|.++.+++|+..+.|.||-++..+.-+........+...|+++.|+|++-++
T Consensus        83 ~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl  161 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL  161 (361)
T ss_pred             ccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence            98 444  3333444 5889999999999999999999999999998887665444444455677889999999999999


Q ss_pred             EEEeCCCCEEEEEc
Q 002564          330 LSAGQDRAFRLFSV  343 (907)
Q Consensus       330 ~s~~~dg~i~iwd~  343 (907)
                      +.|+.|+..|+|+.
T Consensus       162 aaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  162 AAGSTDGKCRVFSA  175 (361)
T ss_pred             cccccCcceeEEEE
Confidence            99999999999985

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.70  E-value=3.9e-17  Score=174.03  Aligned_cols=284  Identities=17%  Similarity=0.256  Sum_probs=218.3

Q ss_pred             eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC
Q 002564          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (907)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~  337 (907)
                      +.+..+. +|.+.|+|+.|...|.++++|+.|..++||..++.    .++....||.+.++.++.+.+...+++++.|..
T Consensus       181 k~ikrLl-gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~----~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  181 KNIKRLL-GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA----RCLASCRGHSGDITDLAVSSNNTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHHH-hhhhheeeeeeccccceEeecCccceeeeeeccch----hhhccCCCCccccchhccchhhhhhhhcccCce
Confidence            4455565 89999999999999999999999999999986654    678888999999999999999899999999999


Q ss_pred             EEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceee
Q 002564          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (907)
Q Consensus       338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~  417 (907)
                      |++|.+..+..+..+                                                                 
T Consensus       256 IrvWrl~~~~pvsvL-----------------------------------------------------------------  270 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVL-----------------------------------------------------------------  270 (1113)
T ss_pred             EEEEecCCCchHHHH-----------------------------------------------------------------
Confidence            999998776544332                                                                 


Q ss_pred             ecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCe
Q 002564          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (907)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  497 (907)
                         .+|.+.|++++|+|-.    +.+.||++++||..- ..+. +.  +.........-+.++.+...+..++|++.|+.
T Consensus       271 ---rghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~-y~--prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e  339 (1113)
T KOG0644|consen  271 ---RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRI-YV--PRPLKFTEKDLVDSILFENNGDRFLTGSRDGE  339 (1113)
T ss_pred             ---hccccceeeeccCccc----cCCCCCceEeccccc-cccc-cC--CCCCCcccccceeeeeccccccccccccCCcc
Confidence               2577999999999976    667899999999871 1111 11  01111123356777888888889999999999


Q ss_pred             EEEEECCCCceeeeeecCcceeEEEEeeC-CCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCc-EEEEE
Q 002564          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSS  575 (907)
Q Consensus       498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~-~l~s~  575 (907)
                      -..|.+.-.....     ..+.-+..+.+ +.+.+++-.+..+.+|++.+|.+.+.+.+|...+..+.++|-+. ...++
T Consensus       340 a~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa  414 (1113)
T KOG0644|consen  340 ARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA  414 (1113)
T ss_pred             cccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence            9888765321110     01111111112 24566666778899999999999999999999999999999664 45589


Q ss_pred             eCCCcEEEEEcCCCceeeEee-eCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564          576 GMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       576 s~Dg~I~vwd~~~~~~~~~~~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (907)
                      +.||...|||+-.|.+++.+. +|..+..-.||+||..++....-| .++|...
T Consensus       415 g~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hg-ql~i~g~  467 (1113)
T KOG0644|consen  415 GYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHG-QLYILGT  467 (1113)
T ss_pred             cCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCC-ceEEecc
Confidence            999999999999999887765 466688999999999988876666 5777753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=2.2e-15  Score=167.87  Aligned_cols=342  Identities=18%  Similarity=0.202  Sum_probs=222.9

Q ss_pred             EEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-------eeeeeeecccccCeEEEEEecCC
Q 002564          208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-------RLQSVIREAHDNAIISLHFFANE  280 (907)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-------~~~~~~~~~h~~~V~~l~~~~~~  280 (907)
                      |+.+ |..+..+..| ...+..++.+++...++++|+.||+|++||+..-       +...++. ...+.+.++...+++
T Consensus      1034 W~p~-G~lVAhL~Eh-s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEH-SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNG 1110 (1431)
T ss_pred             CCcc-ceEeehhhhc-cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCC
Confidence            6654 6677777665 6777788888776449999999999999998642       2222222 246789999999999


Q ss_pred             CEEEEEcCCCcEEEEEccCCCCCc---ceeEeccCCC-CCCeEE-EEec-CCC-EEEEEeCCCCEEEEEceecccceeec
Q 002564          281 PVLMSASADNSIKMWIFDTTDGDP---RLLRFRSGHS-APPLCI-RFYA-NGR-HILSAGQDRAFRLFSVIQDQQSRELS  353 (907)
Q Consensus       281 ~~l~s~~~d~~i~vw~~~~~~~~~---~~~~~~~~h~-~~v~~i-~~~~-~g~-~l~s~~~dg~i~iwd~~~~~~~~~~~  353 (907)
                      ..+|+++.||.|++.+++......   ...+....+. +.+.++ +|.. .+. .++.+...+.+..||++.......+.
T Consensus      1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred             CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence            999999999999999988732221   1122222222 223333 3332 333 67788888899999987644322211


Q ss_pred             hhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEc
Q 002564          354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS  433 (907)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s  433 (907)
                      .                                                                  ....+.|++++++
T Consensus      1191 ~------------------------------------------------------------------~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1191 N------------------------------------------------------------------QLRHGLVTSIVID 1204 (1431)
T ss_pred             c------------------------------------------------------------------CccccceeEEEec
Confidence            0                                                                  0123789999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC---CEEEEEe--cCCeEEEEECCCCce
Q 002564          434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN---TLMISAG--YHGDIKVWDFKGRDL  508 (907)
Q Consensus       434 ~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~--~dg~i~iwd~~~~~~  508 (907)
                      |.++++++|++.|.+.+||++-+..+....       .++..++..+..+|..   ...++++  ..+.|.+|++.+|..
T Consensus      1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~-------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWE-------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             CCceEEEEecCCceEEEEEeecCceeeccc-------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence            999999999999999999999998888876       4666888888887743   3555554  468899999999866


Q ss_pred             eeeeecCc--------------------ceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeE-EEeecCCCCeeeEEECC
Q 002564          509 KSRWEVGC--------------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV-RKFEGHTDRITDFCFSE  567 (907)
Q Consensus       509 ~~~~~~~~--------------------~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~-~~~~~h~~~I~~l~fsp  567 (907)
                      ...+-...                    .....++...+.++.+|+.|..|+.||....+.. ....|..........+.
T Consensus      1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~ 1357 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY 1357 (1431)
T ss_pred             eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhc
Confidence            55543220                    1122333344678999999999999999766544 23333333333333332


Q ss_pred             CCcEEEEEeC--CC------------cEE-EEEcCCCceeeEeeeCCceEEEEECCC-CceEEEEEecCCeEEEee
Q 002564          568 DGKWLLSSGM--DG------------SLR-IWDVILARQIDAIHVDVSITALSLSPN-MDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       568 dg~~l~s~s~--Dg------------~I~-vwd~~~~~~~~~~~~~~~v~~l~~spd-g~~lat~~~d~~~i~lW~  627 (907)
                      + .-++.++.  |-            ..+ .=.+..+.......+|.+|+++++... ..+|++++.|| .|+||.
T Consensus      1358 ~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG-~IkiWk 1431 (1431)
T KOG1240|consen 1358 D-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDG-VIKIWK 1431 (1431)
T ss_pred             c-ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCC-eeeecC
Confidence            2 12222221  10            000 001112222233345777999988754 46888999999 599994

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.70  E-value=3.7e-15  Score=162.13  Aligned_cols=274  Identities=18%  Similarity=0.201  Sum_probs=196.9

Q ss_pred             CeEEEEEccCC-ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee-----eeeeecccccCeEEEEE
Q 002564          203 GKIHVHNVRYD-EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-----QSVIREAHDNAIISLHF  276 (907)
Q Consensus       203 g~I~iwd~~~~-~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~-----~~~~~~~h~~~V~~l~~  276 (907)
                      +.+.+|+++.. ..-..+..  ...|+++.|+|....+++.|..+|.|.+||+..+..     +......|..+++.+.|
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~--~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLES--PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCCceEEEec--CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            47999999876 33333333  589999999999888999999999999999988755     22333578999999999


Q ss_pred             ecCCCE--EEEEcCCCcEEEEEccCCCCCcc--eeEec------cCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEcee
Q 002564          277 FANEPV--LMSASADNSIKMWIFDTTDGDPR--LLRFR------SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ  345 (907)
Q Consensus       277 ~~~~~~--l~s~~~d~~i~vw~~~~~~~~~~--~~~~~------~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~  345 (907)
                      ..+..-  +++++.||.|..|+++.-.....  +....      ..-...++++.|.+ +...++.|+.+|.|..-+-..
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            886654  99999999999998775432111  11111      12235788999998 677899999999876533211


Q ss_pred             cccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCC
Q 002564          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (907)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~  425 (907)
                      .+...+.                                                   +         .........|.+
T Consensus       380 ~~~~~~~---------------------------------------------------~---------~~~~~~~~~h~g  399 (555)
T KOG1587|consen  380 YTPAPEV---------------------------------------------------S---------YKGHSTFITHIG  399 (555)
T ss_pred             Ccccccc---------------------------------------------------c---------ccccccccccCc
Confidence            1100000                                                   0         011112234568


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEEC
Q 002564          426 AVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDF  503 (907)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~  503 (907)
                      .+.++.++|-+..++..+.|.++++|... ...++..+.        .+...|++++|||.. ..++++..||.+.+||+
T Consensus       400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~--------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL  471 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD--------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL  471 (555)
T ss_pred             ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh--------hccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence            99999999998777666669999999987 555555443        677779999999987 46677778999999999


Q ss_pred             CCCc--eeeeeec-CcceeEEEEeeCCCEEEEEeCCCeEEEEEccc
Q 002564          504 KGRD--LKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  546 (907)
Q Consensus       504 ~~~~--~~~~~~~-~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~  546 (907)
                      ....  ++.+... ....+.+.|+++|+.|++|...|.+++|++..
T Consensus       472 l~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  472 LQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             hccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            7543  3333322 35667778888899999999999999999853

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.6e-14  Score=140.31  Aligned_cols=197  Identities=18%  Similarity=0.275  Sum_probs=143.6

Q ss_pred             CCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcC-CCCCEEEEEEcCCC-CEEEEEecCCeEEEEEccCC-
Q 002564          137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-WGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYD-  213 (907)
Q Consensus       137 ~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-h~~~I~~l~~sp~~-~~la~g~~dg~I~iwd~~~~-  213 (907)
                      .......++|+..  ..++++..|-.|++||-++ ++...++. ....|+|++|-|.+ ..|++|+.. -|.+|....- 
T Consensus        98 ~~dlr~~aWhqH~--~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHI--IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhh--hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc
Confidence            3344567788866  7899999999999999766 55555543 36789999999964 588888875 5899986521 


Q ss_pred             ---c--------eEEEEeecCCCCEEEEEEecCCCCEEEEEe-CCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC
Q 002564          214 ---E--------ELVTFTHSMRGAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP  281 (907)
Q Consensus       214 ---~--------~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~  281 (907)
                         .        ....+......+|++|.|.+||. .+++++ .+..|.|||..++..+.... ...+.++-+.|+||+.
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd  251 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGD  251 (445)
T ss_pred             ccccccccccccchhheeCCCCceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCC
Confidence               1        11222222236899999999999 777776 67899999999998877765 4567889999999999


Q ss_pred             EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564          282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (907)
                      +|+++.-|+..++|+....   +...+...+ .+.|...+|+|+|++|+.+... .-+++++.
T Consensus       252 ~lfaAt~davfrlw~e~q~---wt~erw~lg-sgrvqtacWspcGsfLLf~~sg-sp~lysl~  309 (445)
T KOG2139|consen  252 VLFAATCDAVFRLWQENQS---WTKERWILG-SGRVQTACWSPCGSFLLFACSG-SPRLYSLT  309 (445)
T ss_pred             EEEEecccceeeeehhccc---ceecceecc-CCceeeeeecCCCCEEEEEEcC-CceEEEEe
Confidence            9999999999999954322   122222222 3489999999999987765432 33455543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3.1e-16  Score=157.92  Aligned_cols=317  Identities=14%  Similarity=0.166  Sum_probs=235.0

Q ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCC-CCEEEEEeCCCcEEE
Q 002564          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVISI  251 (907)
Q Consensus       173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg-~~~l~sg~~dg~I~i  251 (907)
                      +...+..|.+.|..+.|...|..|++|+.|..|.+||...++....|..+|...|....|-|.. ..-+++++.||.+++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            4466889999999999999999999999999999999999999999999888889888888853 235888999999998


Q ss_pred             EECCCce-ee--eeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCC---CCeEEEEec
Q 002564          252 WNLEKRR-LQ--SVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA---PPLCIRFYA  324 (907)
Q Consensus       252 wd~~~~~-~~--~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~---~v~~i~~~~  324 (907)
                      =.+.... +.  ..+ ..|.++|..++.-|+.+ -|.+++.|+.+.-.|+.......... ....+..   ....++..|
T Consensus       214 s~i~~t~~~e~t~rl-~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  214 SEILETGYVENTKRL-APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeccccceecceec-ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCC
Confidence            8765432 22  233 37999999999999875 68899999999988887664433333 3334444   567888888


Q ss_pred             -CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564          325 -NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (907)
Q Consensus       325 -~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  403 (907)
                       +...+++++.|..+++||.+.-.....-.                     ++..                         
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~---------------------~~~~-------------------------  325 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRIDKEENNG---------------------VLDK-------------------------  325 (559)
T ss_pred             CCccccccCChhhhhhhhcccchhhccccc---------------------hhhh-------------------------
Confidence             55589999999999999976432211000                     0000                         


Q ss_pred             EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccce--eee---ccccccccCcCC--c
Q 002564          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG--SYL---DMSERSNYAHNG--E  476 (907)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~--~~~---~~~~~~~~~h~~--~  476 (907)
                             .+..+...   ..+..|++++++.++.-+++.+.|-.|++|+-.-+.-..  ...   .......++|..  .
T Consensus       326 -------f~p~hl~~---d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T  395 (559)
T KOG1334|consen  326 -------FCPHHLVE---DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT  395 (559)
T ss_pred             -------cCCccccc---cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc
Confidence                   00011111   234789999999999999999999999999643322100  000   000111357754  4


Q ss_pred             EEEEEE-cCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccc
Q 002564          477 VVGVAC-DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL  547 (907)
Q Consensus       477 v~~l~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~  547 (907)
                      |.++-| -|...++++|+.-|.|.||+-+++++++.++.. .-|+|+.-||--..||+.+-|..|+||-..+.
T Consensus       396 VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  396 VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             cceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            677765 677899999999999999999999999888665 57889999999999999999999999976443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.9e-16  Score=159.49  Aligned_cols=306  Identities=14%  Similarity=0.215  Sum_probs=230.1

Q ss_pred             EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC--CCEEEEEcCCCcEEE
Q 002564          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKM  294 (907)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~i~v  294 (907)
                      ..+.. |.+.|..+.|...|. .+++|+.|..|.+||...++....+..+|...|....|.|.  .+.+++++.||.+++
T Consensus       136 ~kL~~-H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  136 KKLNK-HKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hcccC-CCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            33444 489999999999999 99999999999999999999999998899999999999884  458999999999998


Q ss_pred             EEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (907)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (907)
                      =.+..... ..-...+..|.++|..++..| ....|++++.|+.+.-+|++.+.....+.                    
T Consensus       214 s~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--------------------  272 (559)
T KOG1334|consen  214 SEILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--------------------  272 (559)
T ss_pred             eeeccccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--------------------
Confidence            87654432 222455668999999999999 45678899999999999987665433321                    


Q ss_pred             CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 002564          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERFN  452 (907)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~i~d  452 (907)
                                           |...+..                     ..-....+++.|... .+++|+.+-.+++||
T Consensus       273 ---------------------cr~~~~~---------------------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD  310 (559)
T KOG1334|consen  273 ---------------------CREADEK---------------------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYD  310 (559)
T ss_pred             ---------------------eeccCCc---------------------cceeeeeEecCCCCccccccCChhhhhhhhc
Confidence                                 1111000                     002456677777664 789999999999999


Q ss_pred             CCCCccc------eeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCC--C----------ceeee-ee
Q 002564          453 LQSGISR------GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG--R----------DLKSR-WE  513 (907)
Q Consensus       453 ~~~~~~~------~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~----------~~~~~-~~  513 (907)
                      ...-...      ..+....  ........|+|++++.++.-+.++-.|-.|+++.-.-  |          ..... ++
T Consensus       311 ~R~~~~e~~n~~~~~f~p~h--l~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK  388 (559)
T KOG1334|consen  311 QRRIDKEENNGVLDKFCPHH--LVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK  388 (559)
T ss_pred             ccchhhccccchhhhcCCcc--ccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhc
Confidence            7653322      2222100  0012345799999998887777777888899985332  2          11222 33


Q ss_pred             cC---cceeEEE-EeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCC
Q 002564          514 VG---CSLVKIV-YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA  589 (907)
Q Consensus       514 ~~---~~i~~~~-~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~  589 (907)
                      .+   ..|..+- |-|...++++|++-|.|.||+-.++++++-+.|...-|++|.-+|--..||+++-|..|+||--.+.
T Consensus       389 GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  389 GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             ccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            33   3455554 5678899999999999999999999999999998889999999999999999999999999986444

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.8e-14  Score=140.01  Aligned_cols=304  Identities=18%  Similarity=0.277  Sum_probs=196.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc---
Q 002564          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---  257 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~---  257 (907)
                      ...+..++|++.-..+|++..|-.|++||-.. +....++......|+|++|.|.+..-+++|+.. -|.+|.....   
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence            34577889999877889999999999999765 666667666677899999999987788888864 5999986532   


Q ss_pred             -eee--------eeee-cccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC
Q 002564          258 -RLQ--------SVIR-EAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (907)
Q Consensus       258 -~~~--------~~~~-~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g  326 (907)
                       +.+        ..++ .+| .+|++++|.+||..+++++. |..|.+||.+++...+..    ....+.+.-+.|+|||
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~----~~glgg~slLkwSPdg  250 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI----PKGLGGFSLLKWSPDG  250 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc----ccCCCceeeEEEcCCC
Confidence             111        1112 234 68999999999999999886 678999999887553322    2344678899999999


Q ss_pred             CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEE
Q 002564          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (907)
Q Consensus       327 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~  406 (907)
                      .+|+.+.-|+..++|+....                                                          |.
T Consensus       251 d~lfaAt~davfrlw~e~q~----------------------------------------------------------wt  272 (445)
T KOG2139|consen  251 DVLFAATCDAVFRLWQENQS----------------------------------------------------------WT  272 (445)
T ss_pred             CEEEEecccceeeeehhccc----------------------------------------------------------ce
Confidence            99999999999999964321                                                          11


Q ss_pred             eeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC
Q 002564          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN  486 (907)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  486 (907)
                      .+...+          .++.+...+|+|+|++++..... .-.+|.                           +.|+...
T Consensus       273 ~erw~l----------gsgrvqtacWspcGsfLLf~~sg-sp~lys---------------------------l~f~~~~  314 (445)
T KOG2139|consen  273 KERWIL----------GSGRVQTACWSPCGSFLLFACSG-SPRLYS---------------------------LTFDGED  314 (445)
T ss_pred             ecceec----------cCCceeeeeecCCCCEEEEEEcC-CceEEE---------------------------EeecCCC
Confidence            111111          12588999999999998776432 222333                           3332211


Q ss_pred             CEEE-EEecCCeEEEEECCCCceee-eeecCcceeEEEEeeCCCEEEEEeCCC--------eEEEEEcccceeEEEe-ec
Q 002564          487 TLMI-SAGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVNGLLATVADDL--------VIRLFDVVALRMVRKF-EG  555 (907)
Q Consensus       487 ~~l~-s~~~dg~i~iwd~~~~~~~~-~~~~~~~i~~~~~s~~~~~la~~~~dg--------~I~v~d~~~~~~~~~~-~~  555 (907)
                      ..+. .++.-..+-+-|+..-.... .-...+++.+++|.|.|.+||+....+        .|.+||....-.+.-. -|
T Consensus       315 ~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg  394 (445)
T KOG2139|consen  315 SVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCG  394 (445)
T ss_pred             ccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecc
Confidence            1111 12222222233332111000 111237889999999999999986644        3666776543332221 11


Q ss_pred             C--CCCeeeEEECC---CCcEEEEEeCCCcEEEEEcC
Q 002564          556 H--TDRITDFCFSE---DGKWLLSSGMDGSLRIWDVI  587 (907)
Q Consensus       556 h--~~~I~~l~fsp---dg~~l~s~s~Dg~I~vwd~~  587 (907)
                      -  ...-..|+|+|   +|++|..+=.-|.+.-|++.
T Consensus       395 ~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  395 MIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             cccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            1  11244566766   56677766667777777653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.1e-15  Score=152.11  Aligned_cols=203  Identities=22%  Similarity=0.247  Sum_probs=154.4

Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 002564          228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (907)
Q Consensus       228 ~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~  307 (907)
                      .+++|+.+|. .|++|+.||++|||+..+...+.... .|...|.++.|+|||+.|++.+.| ..+||+.+.+..-.  .
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a--~  222 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA--R  222 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh--h
Confidence            7899999998 99999999999999988887777776 799999999999999999999999 99999887762211  1


Q ss_pred             EeccCCCCCCeEEEEecCC---C--EEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeec
Q 002564          308 RFRSGHSAPPLCIRFYANG---R--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (907)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~g---~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (907)
                      ............++|..|+   .  .++....-+.++.|++........+.                             
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~-----------------------------  273 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR-----------------------------  273 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc-----------------------------
Confidence            1112334456778888766   2  22233344566666653222110000                             


Q ss_pred             ccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (907)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~  462 (907)
                                                        ..........++++++|+||+++++|+.+|.|.+|+..+.+.....
T Consensus       274 ----------------------------------~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v  319 (398)
T KOG0771|consen  274 ----------------------------------LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV  319 (398)
T ss_pred             ----------------------------------hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee
Confidence                                              0000112268999999999999999999999999999998888877


Q ss_pred             eccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 002564          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  505 (907)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  505 (907)
                      +       .+|...|+++.|+|+.+++++.+.|....+..+.-
T Consensus       320 k-------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  320 K-------EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             h-------hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            6       69999999999999999999999988888876653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.67  E-value=3.3e-13  Score=149.21  Aligned_cols=273  Identities=15%  Similarity=0.190  Sum_probs=195.1

Q ss_pred             CcceEEEEEecCeEEEEEcCeEEEEeCCee--------EEEEcccccceEEEE-eeCCEEEEEecCCcEEEEecCCCCcc
Q 002564           56 PKKIRALASYRDYTFAAYGNHIAVVKRAHQ--------VATWSRHSAKVNLLL-LFGEHILSIDIDGNMFIWAFKGIEEN  126 (907)
Q Consensus        56 ~~~I~~la~~~~~~~~a~g~~I~vw~~~~~--------~~~~~~h~~~V~~l~-~~g~~l~s~~~dg~v~vWd~~~~~~~  126 (907)
                      -++..+.++-.++.+++.|..|.+||....        ..-+..|  .+.... ..+..++++..-+.+.+=+...... 
T Consensus         7 ~~~l~~~~~~~~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H--~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~-   83 (967)
T KOG0974|consen    7 LGPLNLPQLVSDYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH--RGEGKVKLLSGKIVTCAKSDEVYVKEASNQII-   83 (967)
T ss_pred             cccccchhhccceeeecCCCceEEeeCCchhHhhhhhhhcccccc--cccccceeccceEEEEEeecceeecchhhhhh-
Confidence            345555665558888888999999985332        1114455  111111 2566777777655544333222111 


Q ss_pred             ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCC----EEEEEEcCCCCEEEEEecC
Q 002564          127 LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS----ISSCVSSPALDVVAVGCSD  202 (907)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~----I~~l~~sp~~~~la~g~~d  202 (907)
                          ..   -...+..+-+....  .++++++.++.+.+||...+............    ..-+.++++.-++++|+.-
T Consensus        84 ----~~---~s~wi~g~~l~~e~--k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~  154 (967)
T KOG0974|consen   84 ----ER---FSDWIFGAKLFEEN--KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF  154 (967)
T ss_pred             ----hh---ccccccccchhhhc--ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence                11   12222234445555  68999999999999999888777766543221    1223456777799999999


Q ss_pred             CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCE
Q 002564          203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV  282 (907)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  282 (907)
                      +.|.+|+....+.-..+.+ |.+.|.++.|+-||+ ++++.+.|.++++|++++.+.....--+|+..|..+.|+|+  .
T Consensus       155 ~~iivW~~~~dn~p~~l~G-HeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~  230 (967)
T KOG0974|consen  155 GEIIVWKPHEDNKPIRLKG-HEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R  230 (967)
T ss_pred             ccEEEEeccccCCcceecc-cCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--e
Confidence            9999999984443333444 589999999999999 99999999999999999998877333489999999999999  8


Q ss_pred             EEEEcCCCcEEEEEccCCCCCcceeEeccCCCC-CCeEEEEecCCCEEEEEeCCCCEEEEEceecccc
Q 002564          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA-PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  349 (907)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~-~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~  349 (907)
                      +++++.|.+.++|+.+..     .+..+.+|.. .+..+...++...+++++.|+.+++|++......
T Consensus       231 i~t~gedctcrvW~~~~~-----~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e  293 (967)
T KOG0974|consen  231 IITVGEDCTCRVWGVNGT-----QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE  293 (967)
T ss_pred             eEEeccceEEEEEecccc-----eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence            999999999999965543     3446667754 6889999998889999999999999998765443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.67  E-value=2.8e-14  Score=134.51  Aligned_cols=290  Identities=17%  Similarity=0.247  Sum_probs=201.3

Q ss_pred             CCeEEEEEcCCCCCEEEEEEcC---CCCEEEEEec----CCeEEEEEcc--CCceEEEEeecCCCCEEEEEEecCCC---
Q 002564          170 TKKKLYEFKGWGSSISSCVSSP---ALDVVAVGCS----DGKIHVHNVR--YDEELVTFTHSMRGAVTALAFSSDGQ---  237 (907)
Q Consensus       170 ~~~~~~~~~~h~~~I~~l~~sp---~~~~la~g~~----dg~I~iwd~~--~~~~~~~~~~~~~~~v~~l~fs~dg~---  237 (907)
                      .++.++.+.. .-++.++.|+.   ...+||.|+-    .+.|.|..+.  +++.+..-...|.-+++.+.|.|+..   
T Consensus        34 r~~eiy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~  112 (364)
T KOG0290|consen   34 RRKEIYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY  112 (364)
T ss_pred             ccceEEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC
Confidence            3455666665 46778888883   2348888874    3667776554  45555544455678999999999862   


Q ss_pred             -CEEEEEeCCCcEEEEECCCc--ee--eeee----ecccccCeEEEEEec-CCCEEEEEcCCCcEEEEEccCCCCCccee
Q 002564          238 -PLLASGASSGVISIWNLEKR--RL--QSVI----REAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (907)
Q Consensus       238 -~~l~sg~~dg~I~iwd~~~~--~~--~~~~----~~~h~~~V~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~  307 (907)
                       .+||+++  ..+++|.+...  +.  ...+    ...+..++++..|.. +-+++.+++-|-+..|||+..+. .....
T Consensus       113 pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-~~~vk  189 (364)
T KOG0290|consen  113 PDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-SGTVK  189 (364)
T ss_pred             cchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-cccee
Confidence             3666654  48999998742  11  1111    124667999999987 45688899999999999998762 11334


Q ss_pred             EeccCCCCCCeEEEEecCC-CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccc
Q 002564          308 RFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  386 (907)
Q Consensus       308 ~~~~~h~~~v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  386 (907)
                      ..+-.|...|..++|...+ +.+++.|.||++|+||++.-.....+-.                                
T Consensus       190 TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE--------------------------------  237 (364)
T KOG0290|consen  190 TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE--------------------------------  237 (364)
T ss_pred             eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec--------------------------------
Confidence            5556899999999999854 5788999999999999986543332211                                


Q ss_pred             ccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC-CEEEEEeC-CCcEEEEeCCCC-ccceeee
Q 002564          387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTA-GGWIERFNLQSG-ISRGSYL  463 (907)
Q Consensus       387 ~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~-dg~i~i~d~~~~-~~~~~~~  463 (907)
                                                       .+....+...+++++.. +++++-.. ...|.+.|++.. ..+..+ 
T Consensus       238 ---------------------------------~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L-  283 (364)
T KOG0290|consen  238 ---------------------------------DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL-  283 (364)
T ss_pred             ---------------------------------CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh-
Confidence                                             00112455666666644 56655443 457888998754 333333 


Q ss_pred             ccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECCCCc------eeeeeecCcceeEEEEee-CCCEEEEEeC
Q 002564          464 DMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRD------LKSRWEVGCSLVKIVYHR-VNGLLATVAD  535 (907)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~i~~~~~s~-~~~~la~~~~  535 (907)
                             .+|.+.|++++|.|.. ..|+++|.|..+-+||+...-      ++..+.....|..+.|++ .+..++++..
T Consensus       284 -------~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  284 -------RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             -------hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence                   5999999999999965 789999999999999997542      233445568999999996 5667777654


Q ss_pred             C
Q 002564          536 D  536 (907)
Q Consensus       536 d  536 (907)
                      .
T Consensus       357 k  357 (364)
T KOG0290|consen  357 K  357 (364)
T ss_pred             C
Confidence            3

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=5e-15  Score=163.52  Aligned_cols=236  Identities=17%  Similarity=0.188  Sum_probs=164.1

Q ss_pred             CCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCC
Q 002564          160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG  236 (907)
Q Consensus       160 dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg  236 (907)
                      +..|.+||.... ..+.+..|...+.+.+|||+|+.|+.++.+   ..|.+||+.+++.... ... .+...+++|+|||
T Consensus       183 ~~~i~i~d~dg~-~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~-~g~~~~~~wSPDG  259 (429)
T PRK01742        183 PYEVRVADYDGF-NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASF-RGHNGAPAFSPDG  259 (429)
T ss_pred             eEEEEEECCCCC-CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecC-CCccCceeECCCC
Confidence            468999998544 456677788899999999999999987643   4799999988764322 111 2345578999999


Q ss_pred             CCEEEEEeCCCcEEEE--ECCCceeeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCC
Q 002564          237 QPLLASGASSGVISIW--NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH  313 (907)
Q Consensus       237 ~~~l~sg~~dg~I~iw--d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h  313 (907)
                      +.++++.+.+|.+.||  |+.++.. ..+. .+...+....|+|||+.|+.++ .++...+|+++...+..+.+    .+
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~  333 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GG  333 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cC
Confidence            9444444567765555  6666654 3444 5667788999999999776554 57889999887655433222    33


Q ss_pred             CCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceE
Q 002564          314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV  393 (907)
Q Consensus       314 ~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  393 (907)
                      ..  ....|+|||++++.++.++ +.+||+.++..... ..                                       
T Consensus       334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l-t~---------------------------------------  370 (429)
T PRK01742        334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL-SS---------------------------------------  370 (429)
T ss_pred             CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe-cC---------------------------------------
Confidence            33  4578999999998887765 55588765432110 00                                       


Q ss_pred             EEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCccceeeecccccccc
Q 002564          394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ--SGISRGSYLDMSERSNY  471 (907)
Q Consensus       394 ~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~  471 (907)
                                                  .  .....++|+|+|++++.++.+|.+.+|.+.  .|.....+.        
T Consensus       371 ----------------------------~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~--------  412 (429)
T PRK01742        371 ----------------------------T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP--------  412 (429)
T ss_pred             ----------------------------C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc--------
Confidence                                        0  112346799999999999999988877753  466555553        


Q ss_pred             CcCCcEEEEEEcCC
Q 002564          472 AHNGEVVGVACDST  485 (907)
Q Consensus       472 ~h~~~v~~l~~s~~  485 (907)
                      .|.+.+...+|+|-
T Consensus       413 ~~~g~~~~p~wsp~  426 (429)
T PRK01742        413 GSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCCCcccCCC
Confidence            67888888999874

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.66  E-value=2.3e-12  Score=142.68  Aligned_cols=189  Identities=16%  Similarity=0.205  Sum_probs=152.7

Q ss_pred             eeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCc----ccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEE
Q 002564          101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF----TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE  176 (907)
Q Consensus       101 ~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~  176 (907)
                      +....++.+..++.+.+||...+..    ...+......    ...+..+++.  -++++|+.-+.|.+|+....+....
T Consensus        97 ~e~k~i~l~~~~ns~~i~d~~~~~~----~~~i~~~er~~l~~~~~~g~s~~~--~~i~~gsv~~~iivW~~~~dn~p~~  170 (967)
T KOG0974|consen   97 EENKKIALVTSRNSLLIRDSKNSSV----LSKIQSDERCTLYSSLIIGDSAEE--LYIASGSVFGEIIVWKPHEDNKPIR  170 (967)
T ss_pred             hhcceEEEEEcCceEEEEecccCce----ehhcCCCceEEEEeEEEEeccCcE--EEEEeccccccEEEEeccccCCcce
Confidence            4677888888899999999987766    3333322222    2233356666  6899999999999999874444447


Q ss_pred             EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 002564          177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (907)
Q Consensus       177 ~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~  256 (907)
                      +.+|.+.|..+.++-+|.++++.+.|.++++|++++.+.......+|...|..+.|.|+   .+++++.|.+.++|+.+ 
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~-  246 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVN-  246 (967)
T ss_pred             ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecc-
Confidence            89999999999999999999999999999999999998877444556899999999998   58999999999999754 


Q ss_pred             ceeeeeeeccc-ccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564          257 RRLQSVIREAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (907)
Q Consensus       257 ~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (907)
                      ++.+..+. +| ...|..++..++...++|++.|+.+++|++...
T Consensus       247 ~~~l~~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  247 GTQLEVYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             cceehhhh-hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            44444676 55 457999999999999999999999999987543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=8.4e-14  Score=147.93  Aligned_cols=452  Identities=14%  Similarity=0.111  Sum_probs=280.0

Q ss_pred             ccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCC------------CEEEEEecCCeEEE
Q 002564          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL------------DVVAVGCSDGKIHV  207 (907)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~------------~~la~g~~dg~I~i  207 (907)
                      ...+-++|.|   .++.|+ ...|.+-|..+.+.++.+.-|...|+.+.|.|..            -+||++...|.|.+
T Consensus        18 ~~A~Dw~~~G---LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   18 RNAADWSPSG---LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             ccccccCccc---eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            3455588887   455564 4569999999999999999999999999998732            16778888899999


Q ss_pred             EEccCCceEEEEeecCCCCEEEEEEec---CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEec-CCCEE
Q 002564          208 HNVRYDEELVTFTHSMRGAVTALAFSS---DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL  283 (907)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~v~~l~fs~---dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l  283 (907)
                      ||...+..+..+.++ ..++..++|-+   +.+.+|++-....+|.+|+..+|+...... .......|+.+.| |.+.+
T Consensus        94 ~d~~~~s~~~~l~~~-~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~~DPfd~rh~  171 (1062)
T KOG1912|consen   94 VDFVLASVINWLSHS-NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFRVDPFDSRHF  171 (1062)
T ss_pred             EEehhhhhhhhhcCC-CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeeeeCCCCcceE
Confidence            999999888888776 78899999876   444577777778899999999999888877 4445667788888 55566


Q ss_pred             EEEcCCCcEEEEEccCCC---CCcceeEeccCCCC----------------CC---------eEEEEecCCCEEEEEeCC
Q 002564          284 MSASADNSIKMWIFDTTD---GDPRLLRFRSGHSA----------------PP---------LCIRFYANGRHILSAGQD  335 (907)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~---~~~~~~~~~~~h~~----------------~v---------~~i~~~~~g~~l~s~~~d  335 (907)
                      ..-+..|.+-+-++-...   ...+..+....|+.                ..         ..++|+|.-+.++.....
T Consensus       172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p  251 (1062)
T KOG1912|consen  172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP  251 (1062)
T ss_pred             EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence            666666766666543221   11222222222222                11         124567765556656667


Q ss_pred             CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeecee---
Q 002564          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL---  412 (907)
Q Consensus       336 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~---  412 (907)
                      +.+.++|++-...........               ...++...-..    .. ...+.|.-.+|.+.+|..+....   
T Consensus       252 rellv~dle~~~~l~vvpier---------------~~akfv~vlP~----~~-rd~LfclH~nG~ltirvrk~~~~~f~  311 (1062)
T KOG1912|consen  252 RELLVFDLEYECCLAVVPIER---------------GGAKFVDVLPD----PR-RDALFCLHSNGRLTIRVRKEEPTEFK  311 (1062)
T ss_pred             cceEEEcchhhceeEEEEecc---------------CCcceeEeccC----CC-cceEEEEecCCeEEEEEeeccCcccc
Confidence            779999987665544432211               01112222111    11 22345555667788886554211   


Q ss_pred             ----------cceeeecCCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEE
Q 002564          413 ----------GEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA  481 (907)
Q Consensus       413 ----------~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  481 (907)
                                +.+.-....-....+......|. .+.+++-.++|.+.+|.+.+|+.......       +...-+..+.
T Consensus       312 ~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s-------~~iel~~pf~  384 (1062)
T KOG1912|consen  312 KPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRS-------SSIELVLPFD  384 (1062)
T ss_pred             ccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccc-------cccccccccc
Confidence                      11110001111122233333444 55666777889999999998765443321       1111122222


Q ss_pred             EcCC-----CCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCC-------CEEEEEeCCCeEEEEEccccee
Q 002564          482 CDST-----NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVN-------GLLATVADDLVIRLFDVVALRM  549 (907)
Q Consensus       482 ~s~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~-------~~la~~~~dg~I~v~d~~~~~~  549 (907)
                      |...     ...+..-+.||     ...+|............+...-.|.+       .++|+|...|+|.++|+.++..
T Consensus       385 f~~~~~~v~k~~l~~LS~dg-----~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v  459 (1062)
T KOG1912|consen  385 FNLSTKLVGKTSLISLSDDG-----SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAV  459 (1062)
T ss_pred             ccCceeehhhccccchhhcC-----CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhh
Confidence            2111     12334444555     11222222221111111111111212       3789999999999999999999


Q ss_pred             EEEeecCCCCeeeEEECCCCcEEEEE---------eCCCcEEEEEcCCCcee--eEeee--CCceEEEEECCCCceEEEE
Q 002564          550 VRKFEGHTDRITDFCFSEDGKWLLSS---------GMDGSLRIWDVILARQI--DAIHV--DVSITALSLSPNMDVLATA  616 (907)
Q Consensus       550 ~~~~~~h~~~I~~l~fspdg~~l~s~---------s~Dg~I~vwd~~~~~~~--~~~~~--~~~v~~l~~spdg~~lat~  616 (907)
                      .+.+..|+..|.++.|-...+++-.+         +.-+.+.+-|+++|.-.  +.++.  .++|..+..|.-|+||+..
T Consensus       460 ~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~  539 (1062)
T KOG1912|consen  460 AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAIL  539 (1062)
T ss_pred             hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEE
Confidence            99999999999999998766544322         12245778899998543  22232  4469999999999999999


Q ss_pred             EecCCeEEEeeccc
Q 002564          617 HVDQNGVYLWVNRC  630 (907)
Q Consensus       617 ~~d~~~i~lW~~~~  630 (907)
                      ..+. -+.+||.+.
T Consensus       540 Fr~~-plEiwd~kt  552 (1062)
T KOG1912|consen  540 FRRE-PLEIWDLKT  552 (1062)
T ss_pred             eccc-chHHHhhcc
Confidence            9999 499999854

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=6.2e-13  Score=137.29  Aligned_cols=356  Identities=15%  Similarity=0.196  Sum_probs=226.1

Q ss_pred             EEEEecCCcEEEEecCCCeEEEEEcCC---CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEE
Q 002564          154 VIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL  230 (907)
Q Consensus       154 l~~~s~dg~i~iwd~~~~~~~~~~~~h---~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l  230 (907)
                      +++=+..+ +.+|+....+.......+   ..+.+..++|++|+++|.+. +..+.|++..++..+.+...  . .++++
T Consensus         5 ~aVRsSe~-~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~-~~~~L   79 (566)
T KOG2315|consen    5 YAVRSSEG-FYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--K-KTYDL   79 (566)
T ss_pred             EEEEccce-eEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--c-eeeee
Confidence            34444444 889987654443333333   45578889999999888766 47899999998875544433  2 79999


Q ss_pred             EEecCCCCEEEEEe----------CCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564          231 AFSSDGQPLLASGA----------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (907)
Q Consensus       231 ~fs~dg~~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (907)
                      .|+|-|. +|.+--          ....+.+|+++++.....+....... ++..|+.|..+.+-- ..+.+.+|+....
T Consensus        80 ~fSP~g~-yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f  156 (566)
T KOG2315|consen   80 LFSPKGN-YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSF  156 (566)
T ss_pred             eeccccc-ccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhh-hcceEEEEecCCc
Confidence            9999988 555421          12467899999977776666333333 689999998643322 2567999987653


Q ss_pred             CCCcceeEeccCCCCCCeEEEEecCC--CEEEE-----EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564          301 DGDPRLLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (907)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~g--~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (907)
                      ..   ...  .-|...+....++|.+  ..+++     .|.-+.+++|..........+.....                
T Consensus       157 ~~---~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF----------------  215 (566)
T KOG2315|consen  157 KT---IQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF----------------  215 (566)
T ss_pred             cc---eee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc----------------
Confidence            22   222  2356778888888853  33332     34445677776542221111110000                


Q ss_pred             CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 002564          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (907)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~  453 (907)
                                                                       ....-..+.|.+-|.-|++            
T Consensus       216 -------------------------------------------------Fkadkvqm~WN~~gt~LLv------------  234 (566)
T KOG2315|consen  216 -------------------------------------------------FKADKVQMKWNKLGTALLV------------  234 (566)
T ss_pred             -------------------------------------------------cccceeEEEeccCCceEEE------------
Confidence                                                             0011112222222221111            


Q ss_pred             CCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEE-
Q 002564          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT-  532 (907)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~-  532 (907)
                                             +....++..+.   +--.+.++++.++......-.+...++|.++.|+|+++-+++ 
T Consensus       235 -----------------------LastdVDktn~---SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~Vv  288 (566)
T KOG2315|consen  235 -----------------------LASTDVDKTNA---SYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVV  288 (566)
T ss_pred             -----------------------EEEEeecCCCc---cccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEE
Confidence                                   01111222221   111245677777775555556666799999999999986655 


Q ss_pred             -EeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCC---CcEEEEEcCCCceeeEeeeCCceEEEEECC
Q 002564          533 -VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSP  608 (907)
Q Consensus       533 -~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~v~~l~~sp  608 (907)
                       |..-..+.|||++ +.++..|  ..++-+++-|+|.|++|+.+|-+   |.|-|||+.+.+++..+.... .+-+.|+|
T Consensus       289 yGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~P  364 (566)
T KOG2315|consen  289 YGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSP  364 (566)
T ss_pred             EecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcC
Confidence             4556789999986 4555544  45777889999999999988854   899999999988888876543 56689999


Q ss_pred             CCceEEEEEec-----CCeEEEeecc
Q 002564          609 NMDVLATAHVD-----QNGVYLWVNR  629 (907)
Q Consensus       609 dg~~lat~~~d-----~~~i~lW~~~  629 (907)
                      ||++++|+...     .++++||+..
T Consensus       365 dGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  365 DGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CCcEEEEEeccccEEecCCeEEEEec
Confidence            99999999853     2369999863

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.63  E-value=2.7e-11  Score=122.14  Aligned_cols=437  Identities=13%  Similarity=0.137  Sum_probs=262.9

Q ss_pred             EecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE-------ecCCeE
Q 002564          133 VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG-------CSDGKI  205 (907)
Q Consensus       133 ~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g-------~~dg~I  205 (907)
                      +.+|.-+.......|+=+...++..+.|. +..+++.+|+..+. ..|-+-|+.-.|+|+|+.+|..       ...+.+
T Consensus        32 ~~~h~~cM~n~~l~PDI~GD~IiFt~~Dd-lWe~slk~g~~~ri-tS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDl  109 (668)
T COG4946          32 IGFHEFCMKNYYLNPDIYGDRIIFTCCDD-LWEYSLKDGKPLRI-TSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADL  109 (668)
T ss_pred             ehhhhhhhhhhhcCCcccCcEEEEEechH-HHHhhhccCCeeEE-ecccceeccccCCCCCcEEEEEEEEecCCCccccE
Confidence            33454444445577887666666665554 66667788877654 4457888999999999988862       223568


Q ss_pred             EEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcE----EEEECCCcee-eeeeecccccCeEEEEEecCC
Q 002564          206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI----SIWNLEKRRL-QSVIREAHDNAIISLHFFANE  280 (907)
Q Consensus       206 ~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I----~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~  280 (907)
                      .+++.+.|+..+.--.+ ..--.-.-|.|||+ ++++...-.-.    .+|.+..... ...+   .-++.+.+.+- ||
T Consensus       110 y~v~~e~Ge~kRiTyfG-r~fT~VaG~~~dg~-iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L---nlGpathiv~~-dg  183 (668)
T COG4946         110 YVVPSEDGEAKRITYFG-RRFTRVAGWIPDGE-IIVSTDFHTPFSQWTELYKVNVDGIKTEPL---NLGPATHIVIK-DG  183 (668)
T ss_pred             EEEeCCCCcEEEEEEec-cccceeeccCCCCC-EEEEeccCCCcccceeeeEEccCCceeeec---cCCceeeEEEe-CC
Confidence            88888888754433322 22233455999998 66665432222    2222221111 1111   22344444443 34


Q ss_pred             CEEEEEcCCC------------cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceeccc
Q 002564          281 PVLMSASADN------------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ  348 (907)
Q Consensus       281 ~~l~s~~~d~------------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~  348 (907)
                       .++.|-.--            .=++|.-..+.......-.+.+|-..+.   .- .++..+....||.=.++++.-...
T Consensus       184 -~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~Pm---IV-~~RvYFlsD~eG~GnlYSvdldGk  258 (668)
T COG4946         184 -IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPM---IV-GERVYFLSDHEGVGNLYSVDLDGK  258 (668)
T ss_pred             -EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCce---EE-cceEEEEecccCccceEEeccCCc
Confidence             333322111            1245533222212233333344433222   11 122223334454444444321110


Q ss_pred             ceeechhhhhHHHhhccchhhhcccCceeEeeeccccc--ccccceEEEeeCCceEEEEEeeeceecceeeecCCC-CCC
Q 002564          349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE--RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE-NPT  425 (907)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~-~~~  425 (907)
                             .+                ..-+.|.-...|.  .|+..++  -...+.++++|..+..+.+..+..... ...
T Consensus       259 -------Dl----------------rrHTnFtdYY~R~~nsDGkrIv--Fq~~GdIylydP~td~lekldI~lpl~rk~k  313 (668)
T COG4946         259 -------DL----------------RRHTNFTDYYPRNANSDGKRIV--FQNAGDIYLYDPETDSLEKLDIGLPLDRKKK  313 (668)
T ss_pred             -------hh----------------hhcCCchhccccccCCCCcEEE--EecCCcEEEeCCCcCcceeeecCCccccccc
Confidence                   00                0001111111222  2333333  345678899998877664443331111 111


Q ss_pred             c------eEEEE-EcC-CCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCC-
Q 002564          426 A------VKACT-ISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-  496 (907)
Q Consensus       426 ~------v~~~~-~s~-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-  496 (907)
                      .      ..-+. +++ +|++++..+ -|...+.+...+-.++          -+|.+.|.-..+..+++-++.|..|| 
T Consensus       314 ~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq----------v~~~~~VrY~r~~~~~e~~vigt~dgD  382 (668)
T COG4946         314 QPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ----------VGKKGGVRYRRIQVDPEGDVIGTNDGD  382 (668)
T ss_pred             cccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE----------cCCCCceEEEEEccCCcceEEeccCCc
Confidence            1      11111 222 466766654 4567777766555444          37888898888888888899999999 


Q ss_pred             eEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEe
Q 002564          497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG  576 (907)
Q Consensus       497 ~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s  576 (907)
                      .+-|+|..+++.......-+.|.++..+++|++++++.+...+.++|++++.....=+...+-|+.+.|||+++|+|-+-
T Consensus       383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf  462 (668)
T COG4946         383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF  462 (668)
T ss_pred             eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec
Confidence            89999999998777777779999999999999999999999999999999987655555668899999999999999887


Q ss_pred             CCC----cEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEe
Q 002564          577 MDG----SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV  618 (907)
Q Consensus       577 ~Dg----~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~  618 (907)
                      -+|    .|+++|+.+++..+.-.....-.+-+|.|||++|..-+.
T Consensus       463 P~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         463 PEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             CcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence            665    699999999887776555444667889999999887654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=9.1e-13  Score=136.06  Aligned_cols=374  Identities=13%  Similarity=0.174  Sum_probs=237.3

Q ss_pred             EEecCCcEEEEecCCCCccccceeeEecC--CCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEE
Q 002564          108 SIDIDGNMFIWAFKGIEENLAPVGHVKLD--DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSIS  185 (907)
Q Consensus       108 s~~~dg~v~vWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~  185 (907)
                      .....-.+.+|+.......   ..++...  ......+++++++  +.++.+ .+..+.|++..++..+.+....  .+.
T Consensus         6 aVRsSe~~~l~~~~~~~~~---~~~f~~~~~~~~~~v~~~S~~G--~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~   77 (566)
T KOG2315|consen    6 AVRSSEGFYLFNGPGSKDA---VTVFEQNKTSRPCNVFAYSNNG--RLFAYS-DNQVVKVFEIATLKVVLCVELK--KTY   77 (566)
T ss_pred             EEEccceeEEeccCCcccc---ccccccCCCCCcceeEEEcCCC--cEEEEE-cCCeEEEEEccCCcEEEEeccc--eee
Confidence            3334555788877654331   1222221  2224577788888  455554 6677999999988766666553  889


Q ss_pred             EEEEcCCCCEEEEE-----ec-----CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 002564          186 SCVSSPALDVVAVG-----CS-----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE  255 (907)
Q Consensus       186 ~l~~sp~~~~la~g-----~~-----dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~  255 (907)
                      ++.|||.|.+|.+=     ..     .-.+.+|+++++.....+....+.. .+..|+.|..  +++--..+.+.+|++.
T Consensus        78 ~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEs--l~arlv~nev~f~~~~  154 (566)
T KOG2315|consen   78 DLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDES--LAARLVSNEVQFYDLG  154 (566)
T ss_pred             eeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchh--hhhhhhcceEEEEecC
Confidence            99999999988752     11     2357899999977666666543333 6999999986  4433456789999998


Q ss_pred             CceeeeeeecccccCeEEEEEecCC-C-EEEE-----EcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCE
Q 002564          256 KRRLQSVIREAHDNAIISLHFFANE-P-VLMS-----ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (907)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~~~~~-~-~l~s-----~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~  328 (907)
                      +.+....-  -|...|+.+.++|.+ . .+++     .|.-..|++|.+.... ....+....-....=..+.|++-|.-
T Consensus       155 ~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~~~~a~ksFFkadkvqm~WN~~gt~  231 (566)
T KOG2315|consen  155 SFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QHQPVANKSFFKADKVQMKWNKLGTA  231 (566)
T ss_pred             Cccceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-ccchhhhccccccceeEEEeccCCce
Confidence            85544443  378889999999983 3 3333     3445678998765221 11111111111222234555554433


Q ss_pred             EEE-EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEe
Q 002564          329 ILS-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (907)
Q Consensus       329 l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~  407 (907)
                      |+. ++.|       +.                                                               
T Consensus       232 LLvLastd-------VD---------------------------------------------------------------  241 (566)
T KOG2315|consen  232 LLVLASTD-------VD---------------------------------------------------------------  241 (566)
T ss_pred             EEEEEEEe-------ec---------------------------------------------------------------
Confidence            221 1111       00                                                               


Q ss_pred             eeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC
Q 002564          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT  487 (907)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  487 (907)
                                                ..+   .+-+...++++++++.....-.+         ...++|.++.|+|+++
T Consensus       242 --------------------------ktn---~SYYGEq~Lyll~t~g~s~~V~L---------~k~GPVhdv~W~~s~~  283 (566)
T KOG2315|consen  242 --------------------------KTN---ASYYGEQTLYLLATQGESVSVPL---------LKEGPVHDVTWSPSGR  283 (566)
T ss_pred             --------------------------CCC---ccccccceEEEEEecCceEEEec---------CCCCCceEEEECCCCC
Confidence                                      000   00012234455555421111111         4578999999999997


Q ss_pred             EEEEE--ecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC---CeEEEEEcccceeEEEeecCCCCeee
Q 002564          488 LMISA--GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITD  562 (907)
Q Consensus       488 ~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---g~I~v~d~~~~~~~~~~~~h~~~I~~  562 (907)
                      -++++  -+-..+.|+|++. .++..+ ..++-+++-|+|.|++++.++-+   |.+.|||+.+.+++..+.....  +-
T Consensus       284 EF~VvyGfMPAkvtifnlr~-~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~  359 (566)
T KOG2315|consen  284 EFAVVYGFMPAKVTIFNLRG-KPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TV  359 (566)
T ss_pred             EEEEEEecccceEEEEcCCC-CEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eE
Confidence            66554  3667899999764 333333 23677899999999999887764   7999999999999988876543  45


Q ss_pred             EEECCCCcEEEEEeC------CCcEEEEEcCCCceeeEeeeCCceEEEEECC
Q 002564          563 FCFSEDGKWLLSSGM------DGSLRIWDVILARQIDAIHVDVSITALSLSP  608 (907)
Q Consensus       563 l~fspdg~~l~s~s~------Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~sp  608 (907)
                      +.|+|||+|++|++.      |..++||++. |..+..-...+....+.|-|
T Consensus       360 ~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P  410 (566)
T KOG2315|consen  360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRP  410 (566)
T ss_pred             EEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeee
Confidence            789999999998874      7789999974 77776655555566666655

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.62  E-value=2.4e-15  Score=150.69  Aligned_cols=268  Identities=15%  Similarity=0.202  Sum_probs=209.1

Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (907)
                      ....+.+.++.+|+ +|+.|+..|.|..+|..++++...+.  -...|.++.|..+.++++++- .+.+.|||-.  .  
T Consensus       129 eFGPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--G--  200 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGR-HLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--G--  200 (545)
T ss_pred             ccCCeeeeecCCcc-EEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhh-hceEEEecCC--C--
Confidence            34568899999999 78889999999999999999998886  567899999999998888775 5678888532  2  


Q ss_pred             cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecc
Q 002564          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  383 (907)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  383 (907)
                       ..+..+..| ..|..+.|.|---+|++++..|.++.-|+.+++.+.++..+                            
T Consensus       201 -tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~----------------------------  250 (545)
T KOG1272|consen  201 -TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG----------------------------  250 (545)
T ss_pred             -cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc----------------------------
Confidence             334444444 57889999998878889999999999999988876654321                            


Q ss_pred             cccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeee
Q 002564          384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  463 (907)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~  463 (907)
                                                              .+.+..++-+|-...+-+|..+|+|.+|...+..++..+.
T Consensus       251 ----------------------------------------~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL  290 (545)
T KOG1272|consen  251 ----------------------------------------AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL  290 (545)
T ss_pred             ----------------------------------------CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence                                                    2566777778888889999999999999999998888775


Q ss_pred             ccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEE
Q 002564          464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD  543 (907)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d  543 (907)
                              .|.++|.+++++++|++++|+|.|..++|||+.....+.++....+...+++|..| +||++ ....|.||.
T Consensus       291 --------cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~-~G~~v~iw~  360 (545)
T KOG1272|consen  291 --------CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALS-YGDHVQIWK  360 (545)
T ss_pred             --------hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeee-cCCeeeeeh
Confidence                    89999999999999999999999999999999998877777777788888998644 44444 345788884


Q ss_pred             -cccce--eEEEeecC--CCCeeeEEECCCCcEEEEEeCCC
Q 002564          544 -VVALR--MVRKFEGH--TDRITDFCFSEDGKWLLSSGMDG  579 (907)
Q Consensus       544 -~~~~~--~~~~~~~h--~~~I~~l~fspdg~~l~s~s~Dg  579 (907)
                       .-.+.  .-..+-.|  .++|.++.|.|-...|-.|-..|
T Consensus       361 d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  361 DALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             hhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence             22211  11112223  25788999998776666655444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=3.8e-14  Score=156.53  Aligned_cols=235  Identities=9%  Similarity=0.095  Sum_probs=164.1

Q ss_pred             CCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCC---CcEEEEEccCCCCCcceeEeccCCCCCCeEEEE
Q 002564          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF  322 (907)
Q Consensus       246 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~  322 (907)
                      +..|.+||..... ...+. .|...+.+..|+|||+.|+.++.+   ..|++|++..+  ..+.+....+|.   ..++|
T Consensus       183 ~~~i~i~d~dg~~-~~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg--~~~~l~~~~g~~---~~~~w  255 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG--ARKVVASFRGHN---GAPAF  255 (429)
T ss_pred             eEEEEEECCCCCC-ceEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC--ceEEEecCCCcc---CceeE
Confidence            4689999986655 34454 677889999999999999887654   36899987643  333444444443   46899


Q ss_pred             ecCCCEEEEEe-CCCCEEEEEce--ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCC
Q 002564          323 YANGRHILSAG-QDRAFRLFSVI--QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (907)
Q Consensus       323 ~~~g~~l~s~~-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  399 (907)
                      +|||+.|+.++ .+|...+|.+.  ++.. ..+                                               
T Consensus       256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~l-----------------------------------------------  287 (429)
T PRK01742        256 SPDGSRLAFASSKDGVLNIYVMGANGGTP-SQL-----------------------------------------------  287 (429)
T ss_pred             CCCCCEEEEEEecCCcEEEEEEECCCCCe-Eee-----------------------------------------------
Confidence            99999888764 67876666442  2110 000                                               


Q ss_pred             ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccceeeeccccccccCcCCcEE
Q 002564          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (907)
Q Consensus       400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (907)
                                           ..+...+...+|+|||+.++..+ .+|...+|++..........        .+..  .
T Consensus       288 ---------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--------~~~~--~  336 (429)
T PRK01742        288 ---------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--------GGRG--Y  336 (429)
T ss_pred             ---------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--------cCCC--C
Confidence                                 01224567889999999877655 56888888765322211111        2222  3


Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcc--cceeEEEeecC
Q 002564          479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV--ALRMVRKFEGH  556 (907)
Q Consensus       479 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~--~~~~~~~~~~h  556 (907)
                      ...|+|+|+.++.++.++ +.+||+.+++....... .......|+|+|++++.++.++.+.+|++.  +++..+++.+|
T Consensus       337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~  414 (429)
T PRK01742        337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS  414 (429)
T ss_pred             CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence            578999999998888765 55599988875433222 234567899999999999999988888763  57888999999


Q ss_pred             CCCeeeEEECCC
Q 002564          557 TDRITDFCFSED  568 (907)
Q Consensus       557 ~~~I~~l~fspd  568 (907)
                      .+.+...+|||-
T Consensus       415 ~g~~~~p~wsp~  426 (429)
T PRK01742        415 DGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCcccCCC
Confidence            999999999984

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.61  E-value=1.8e-12  Score=132.05  Aligned_cols=359  Identities=13%  Similarity=0.183  Sum_probs=239.4

Q ss_pred             EEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEE
Q 002564          164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG  243 (907)
Q Consensus       164 ~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg  243 (907)
                      ..|+..+...-..+....-++...++||.|.+|++.... .|.+|.-..+..+..+.+   ..|..+.|+|.+. +|.+-
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~k-YL~tw   89 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH---PDVKYLDFSPNEK-YLVTW   89 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeeec---CCceecccCcccc-eeeee
Confidence            345555555545555467889999999999999988775 489999888777766665   4699999999999 88876


Q ss_pred             eCC---------------CcEEEEECCCceeeeeeecccccC--eE-EEEEecCCCEEEEEcCCCcEEEEEccCCCCCcc
Q 002564          244 ASS---------------GVISIWNLEKRRLQSVIREAHDNA--II-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPR  305 (907)
Q Consensus       244 ~~d---------------g~I~iwd~~~~~~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~  305 (907)
                      +..               +.+.+||+.+|.++..+. .-..+  .. -+.|+-+..+++-.. ...++++++ +.+-...
T Consensus        90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~  166 (561)
T COG5354          90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEH  166 (561)
T ss_pred             ccCCccChhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccC
Confidence            543               359999999999999887 44443  44 678888887766553 457899986 3322211


Q ss_pred             eeEeccCCCCCCeEEEEecCC--CEEEE-----EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeE
Q 002564          306 LLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (907)
Q Consensus       306 ~~~~~~~h~~~v~~i~~~~~g--~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  378 (907)
                      ....+  ....+....|+|.+  ..|+.     .+.++++++|.+........-.                         
T Consensus       167 p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-------------------------  219 (561)
T COG5354         167 PFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-------------------------  219 (561)
T ss_pred             chhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-------------------------
Confidence            11211  13567777888853  33332     3455666666665322221100                         


Q ss_pred             eeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe-----------CCCc
Q 002564          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-----------AGGW  447 (907)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-----------~dg~  447 (907)
                                               ++.                  ..-..+.|.+.|+++++-.           ....
T Consensus       220 -------------------------lfk------------------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn  256 (561)
T COG5354         220 -------------------------LFK------------------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN  256 (561)
T ss_pred             -------------------------eEe------------------ecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence                                     000                  1122345566666554321           1246


Q ss_pred             EEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe--cCCeEEEEECCCCceeeeeecCcceeEEEEee
Q 002564          448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR  525 (907)
Q Consensus       448 i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~  525 (907)
                      +++++++.......         ..-.++|...+|.|.++.+++.+  .+..+.++|+...  +..+-....-..+.|+|
T Consensus       257 Lyl~~~~e~~i~V~---------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp  325 (561)
T COG5354         257 LYLLRITERSIPVE---------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP  325 (561)
T ss_pred             EEEEeeccccccee---------ccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC
Confidence            77888774333222         14578999999999887766544  7788999998876  33344445667789999


Q ss_pred             CCCEEEEEeCC---CeEEEEEcccceeEE-EeecCCCCeeeEEECCCCcEEEEEe------CCCcEEEEEcCCCceeeEe
Q 002564          526 VNGLLATVADD---LVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSG------MDGSLRIWDVILARQIDAI  595 (907)
Q Consensus       526 ~~~~la~~~~d---g~I~v~d~~~~~~~~-~~~~h~~~I~~l~fspdg~~l~s~s------~Dg~I~vwd~~~~~~~~~~  595 (907)
                      .++++++++-|   |.|.+||......+. .+.+...  +-+.|+|||+++.++.      .|..|.+||+......   
T Consensus       326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f---  400 (561)
T COG5354         326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF---  400 (561)
T ss_pred             cccEEEEecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh---
Confidence            99999887665   689999988765444 6765443  3457999999988764      3788999998744322   


Q ss_pred             eeCCceEEEEECCCCceEEEEEecC
Q 002564          596 HVDVSITALSLSPNMDVLATAHVDQ  620 (907)
Q Consensus       596 ~~~~~v~~l~~spdg~~lat~~~d~  620 (907)
                          ..+.+.|.|.|++.-+.+...
T Consensus       401 ----el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         401 ----ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ----hhhhccccCCcccceeeccCC
Confidence                466789999988877766554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.60  E-value=2.4e-13  Score=130.37  Aligned_cols=208  Identities=13%  Similarity=0.159  Sum_probs=164.9

Q ss_pred             CCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCC---eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccC
Q 002564          136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY  212 (907)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~  212 (907)
                      -...+...+++++.  ..++++..+..|.||.....   +..++++.|...|+++.|+|..+.|++++.|..-.+|....
T Consensus         9 ~~~pitchAwn~dr--t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDR--TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCC--ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence            34556677899998  88999999999999987654   57899999999999999999999999999999999999843


Q ss_pred             C---ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee---eeeeecccccCeEEEEEecCCCEEEEE
Q 002564          213 D---EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSA  286 (907)
Q Consensus       213 ~---~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~  286 (907)
                      +   ++...+... +...+++.|+|.+. .+|+|+....|.||=.+...-   -+.++..+.+.|+++.|+|++-+|++|
T Consensus        87 ~~~WkptlvLlRi-NrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   87 GGTWKPTLVLLRI-NRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCeeccceeEEEe-ccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            3   233444443 67899999999998 899999999999998765532   223334678899999999999999999


Q ss_pred             cCCCcEEEEEccCC-----CC---------CcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecc
Q 002564          287 SADNSIKMWIFDTT-----DG---------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  347 (907)
Q Consensus       287 ~~d~~i~vw~~~~~-----~~---------~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~  347 (907)
                      +.|+..+++..-..     ..         -..++.......+.+..+.|+|+|..|+-.+.|+++.+-|...+.
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            99999999854211     10         011222333556789999999999999999999999998876553

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=2.8e-13  Score=139.51  Aligned_cols=271  Identities=14%  Similarity=0.180  Sum_probs=196.8

Q ss_pred             ccccCeEEEEEecCCCEEE-EEcCCCcEEEEEccCCCCCcceeEeccCC-CCCCeEEEEecCCCEEEEEeCCCCEEEEEc
Q 002564          266 AHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (907)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~  343 (907)
                      .|....+.|..+|||++++ +|..--.|++||+....     ++.-... ...|.-.-.+.|-..++.--.|++|-+..-
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccce-----eeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence            4777889999999999765 55567899999886542     2222122 223333334445445555555665544321


Q ss_pred             eecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCC
Q 002564          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (907)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~  423 (907)
                      ....                                                                   ..++.    
T Consensus       124 ~G~h-------------------------------------------------------------------y~~RI----  132 (703)
T KOG2321|consen  124 YGRH-------------------------------------------------------------------YRTRI----  132 (703)
T ss_pred             cCee-------------------------------------------------------------------eeeec----
Confidence            1000                                                                   00000    


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (907)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  503 (907)
                      +..-..++++.-..-|+++.....|+.+|+..|..+..+.        ...+.++++.+++...+|++|+.+|.|.+||.
T Consensus       133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~--------~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp  204 (703)
T KOG2321|consen  133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE--------TDSGELNVVSINEEHGLLACGTEDGVVEFWDP  204 (703)
T ss_pred             CcCCccccccCCCccEEEeecCcceEEEEccccccccccc--------cccccceeeeecCccceEEecccCceEEEecc
Confidence            1222344444444456667777889999999999988875        55688999999999999999999999999999


Q ss_pred             CCCceeeeeecCc------------ceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee-cCCCCeeeEEECCC--
Q 002564          504 KGRDLKSRWEVGC------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSED--  568 (907)
Q Consensus       504 ~~~~~~~~~~~~~------------~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~-~h~~~I~~l~fspd--  568 (907)
                      .....+.++....            .|+++.|+.+|-.+++|+.+|.|.|||+.+.+++..-. +..-+|..+.|.+.  
T Consensus       205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence            9887777665443            39999999999999999999999999999988765433 33467889999775  


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCC
Q 002564          569 GKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN  621 (907)
Q Consensus       569 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~  621 (907)
                      +..++|. ....++|||-.+|+....+....++..+|+-|++-++.+|-.+..
T Consensus       285 q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~  336 (703)
T KOG2321|consen  285 QNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSK  336 (703)
T ss_pred             CceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCc
Confidence            3455554 456899999999999999998888999999999999999987764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.59  E-value=1.7e-13  Score=132.35  Aligned_cols=331  Identities=16%  Similarity=0.219  Sum_probs=215.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCce----EEEEeecC------------CCCEEEEEEecCCC-CEEEEE
Q 002564          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE----LVTFTHSM------------RGAVTALAFSSDGQ-PLLASG  243 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~----~~~~~~~~------------~~~v~~l~fs~dg~-~~l~sg  243 (907)
                      ..-|.++.|...|.+||+|..+|.|.++.-.....    ..+..+.|            ...|..+.|.+++. ..+...
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            56789999999999999999999999997543221    22222222            24688899988764 245556


Q ss_pred             eCCCcEEEEECCCce-----------------------------------eeeeeecccccCeEEEEEecCCCEEEEEcC
Q 002564          244 ASSGVISIWNLEKRR-----------------------------------LQSVIREAHDNAIISLHFFANEPVLMSASA  288 (907)
Q Consensus       244 ~~dg~I~iwd~~~~~-----------------------------------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~  288 (907)
                      +.|.+|++|-+....                                   +...+..+|..-|.++.+..|+..++++. 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence            679999999875331                                   12223357889999999999999888875 


Q ss_pred             CCcEEEEEccCCCCCcceeEeccC----CCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564          289 DNSIKMWIFDTTDGDPRLLRFRSG----HSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK  363 (907)
Q Consensus       289 d~~i~vw~~~~~~~~~~~~~~~~~----h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  363 (907)
                      |=.|.+|+++..++...++.....    -+.-|++..|+| .-..++..+..|+|++.|++.......-           
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h-----------  252 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH-----------  252 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch-----------
Confidence            778999999887766555543322    134578888888 4567777888899999887643211000           


Q ss_pred             ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (907)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (907)
                                                                                                      
T Consensus       253 --------------------------------------------------------------------------------  252 (433)
T KOG1354|consen  253 --------------------------------------------------------------------------------  252 (433)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC-CCceeeeeecC-------
Q 002564          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG-------  515 (907)
Q Consensus       444 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-------  515 (907)
                          -.+|.......-..+       ...--..|..+.|++.|+++++-+. -+|++||+. ..+++.+++.+       
T Consensus       253 ----sKlfEepedp~~rsf-------fseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  253 ----SKLFEEPEDPSSRSF-------FSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             ----hhhhccccCCcchhh-------HHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence                000000000000000       0134467889999999999988765 799999994 55666666543       


Q ss_pred             ---------cceeEEEEeeCCCEEEEEeCCCeEEEEEccccee-EEEeecCCCC--eeeEEECCCCcEEEEEeCCCcEEE
Q 002564          516 ---------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRI  583 (907)
Q Consensus       516 ---------~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~-~~~~~~h~~~--I~~l~fspdg~~l~s~s~Dg~I~v  583 (907)
                               -.-..++|+.++..+++|+.....++|+...|.. -.++......  ...+   ..-+.+.+++....   
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~---  394 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKR---  394 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCccc---
Confidence                     1224578998899999999999999999766533 2233322221  1111   11233444444433   


Q ss_pred             EEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEee
Q 002564          584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       584 wd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~  627 (907)
                          ..--+..+.....+...+|+|..+.+|.+..+.  ++++.
T Consensus       395 ----~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn--lyif~  432 (433)
T KOG1354|consen  395 ----DEISVDALDFRKKILHTAWHPKENSIAVAATNN--LYIFQ  432 (433)
T ss_pred             ----cccccchhhhhhHHHhhccCCccceeeeeecCc--eEEec
Confidence                222234445555678899999999999998876  77763

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=7.3e-12  Score=132.02  Aligned_cols=518  Identities=12%  Similarity=0.130  Sum_probs=318.8

Q ss_pred             CCcceEEEEEecCeEEEEEcCe---EEEEeCCee-----------------EEEEcccccceEEEEee--CCEEEEEecC
Q 002564           55 LPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ-----------------VATWSRHSAKVNLLLLF--GEHILSIDID  112 (907)
Q Consensus        55 ~~~~I~~la~~~~~~~~a~g~~---I~vw~~~~~-----------------~~~~~~h~~~V~~l~~~--g~~l~s~~~d  112 (907)
                      ......|++|..+.-|+|+|+.   ++|.+.+..                 -+++.||.+.|.-+.|+  .+.|-|.+.+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            3456789999999999999876   666653211                 23488999999999995  5678888889


Q ss_pred             CcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEE--EEcCCCCCEEEEEEc
Q 002564          113 GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY--EFKGWGSSISSCVSS  190 (907)
Q Consensus       113 g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~h~~~I~~l~~s  190 (907)
                      |.|.||-+-.+.-....+.  .-....+.++.|..+|  .++.+...||.|.+=.++. ..+.  .+++  .....+.|+
T Consensus        93 GlIiVWmlykgsW~EEMiN--nRnKSvV~SmsWn~dG--~kIcIvYeDGavIVGsvdG-NRIwgKeLkg--~~l~hv~ws  165 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMIN--NRNKSVVVSMSWNLDG--TKICIVYEDGAVIVGSVDG-NRIWGKELKG--QLLAHVLWS  165 (1189)
T ss_pred             ceEEEEeeecccHHHHHhh--CcCccEEEEEEEcCCC--cEEEEEEccCCEEEEeecc-ceecchhcch--heccceeec
Confidence            9999998877654111111  1123455666677777  7777777787776655532 2222  2332  334578899


Q ss_pred             CCCCEEEEEecCCeEEEEEccCCc-------eEEEEeec---CCCCEEEEEEe--------cCCCCEEEEEeCCCcEEEE
Q 002564          191 PALDVVAVGCSDGKIHVHNVRYDE-------ELVTFTHS---MRGAVTALAFS--------SDGQPLLASGASSGVISIW  252 (907)
Q Consensus       191 p~~~~la~g~~dg~I~iwd~~~~~-------~~~~~~~~---~~~~v~~l~fs--------~dg~~~l~sg~~dg~I~iw  252 (907)
                      +|.+.+..+-.+|.+++||....-       +.....+.   ....|..+.|.        ||.. .++++..+|.+.|-
T Consensus       166 ~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiM  244 (1189)
T KOG2041|consen  166 EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIM  244 (1189)
T ss_pred             ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhh
Confidence            999998889999999999976321       11111111   12246666664        3544 89999999999888


Q ss_pred             ECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCC---------cEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN---------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (907)
Q Consensus       253 d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~---------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (907)
                      .-++......+.  ..-.+....|+++|..|+.+|.+.         .|.++.     .-...+.++.-....|++++|-
T Consensus       245 R~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-----p~G~i~gtlkvpg~~It~lsWE  317 (1189)
T KOG2041|consen  245 RSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-----PYGHIVGTLKVPGSCITGLSWE  317 (1189)
T ss_pred             hhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEec-----cchhheEEEecCCceeeeeEEc
Confidence            766554444444  236789999999999999998652         344441     1224566666677889999998


Q ss_pred             cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEE-e---eCC
Q 002564          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC-H---MDT  399 (907)
Q Consensus       324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~---~~~  399 (907)
                      ..|-.++.+ .|+.|.+=+++..-.-..+..                                    .++.. .   ...
T Consensus       318 g~gLriA~A-vdsfiyfanIRP~ykWgy~e~------------------------------------TvVy~y~~~e~p~  360 (1189)
T KOG2041|consen  318 GTGLRIAIA-VDSFIYFANIRPEYKWGYIEE------------------------------------TVVYVYQKEELPQ  360 (1189)
T ss_pred             CCceEEEEE-ecceEEEEeecccceEEEeee------------------------------------EEEEEEccCCCcc
Confidence            877666554 467777766654322111110                                    01111 0   112


Q ss_pred             ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccc---cccCcCCc
Q 002564          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER---SNYAHNGE  476 (907)
Q Consensus       400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~h~~~  476 (907)
                      ..+..||..+.......       -....++++..+--.++.-..+|.+.-++.-.......+......   .....-..
T Consensus       361 y~i~Fwdtk~nek~vK~-------V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytd  433 (1189)
T KOG2041|consen  361 YGIMFWDTKTNEKTVKT-------VTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTD  433 (1189)
T ss_pred             eEEEEEecccChhhhhh-------hcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcce
Confidence            45667887665332111       134556677766667777777777766632211111101000000   00011111


Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCCCcee-------------------------eee--------ecCcceeEEEE
Q 002564          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-------------------------SRW--------EVGCSLVKIVY  523 (907)
Q Consensus       477 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~--------~~~~~i~~~~~  523 (907)
                      |.-.-..-++..++.++. ..+.+|.+...+..                         ..+        ....+|..++.
T Consensus       434 irP~Fv~vn~~~vviAS~-e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~  512 (1189)
T KOG2041|consen  434 IRPKFVCVNGICVVIASE-ERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCI  512 (1189)
T ss_pred             eeeeEEEecceEEEEecc-ccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeee
Confidence            222222234555666665 45677865432110                         000        11256767766


Q ss_pred             eeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcC---CCceeeEe-eeCC
Q 002564          524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI---LARQIDAI-HVDV  599 (907)
Q Consensus       524 s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~---~~~~~~~~-~~~~  599 (907)
                      +  .+++.++-..|.|.-|.+.+.-+..... -...|.+++.+-+...++.-..-|.+.+.|+.   +|..+..+ +...
T Consensus       513 s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~er  589 (1189)
T KOG2041|consen  513 S--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSER  589 (1189)
T ss_pred             c--ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhh
Confidence            5  6889999999999999998876665554 44678899998888888888888888888886   45555533 3333


Q ss_pred             -ceEEEEECCCCceEEEEEecCCeEEEeecccccccCC
Q 002564          600 -SITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDS  636 (907)
Q Consensus       600 -~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~~~  636 (907)
                       .|+.+.|..|...|.+--... .+++++....-.|++
T Consensus       590 rDVWd~~Wa~dNp~llAlmeKt-rmyifrgndpeEp~s  626 (1189)
T KOG2041|consen  590 RDVWDYEWAQDNPNLLALMEKT-RMYIFRGNDPEEPSS  626 (1189)
T ss_pred             hhhhhhhhccCCchHHhhhhhc-eEEEecCcCcccccc
Confidence             499999999887666554444 488888765555544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=2.6e-13  Score=133.76  Aligned_cols=273  Identities=13%  Similarity=0.183  Sum_probs=192.1

Q ss_pred             CCEEEEEEecCCCCEEEEEe-CCCcEEEEECCCceeeeeee-----cccccCeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564          225 GAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (907)
Q Consensus       225 ~~v~~l~fs~dg~~~l~sg~-~dg~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (907)
                      ..|++++|..|++.-+..+. .+..+..+.+....+.....     .....+|..+... |+ .|++|-.+|.+.+|...
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEecc
Confidence            57888888877654444444 66777777777665555431     1345667777664 33 68888889999999876


Q ss_pred             CCCCCcceeEeccCCCCCCeEEEEecC-CCEEEEEeCC--CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCc
Q 002564          299 TTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQD--RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP  375 (907)
Q Consensus       299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~-g~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (907)
                      .++.....+..+..+ .++..+.-++. ...+++||..  ..+.+||+...+++                          
T Consensus       134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--------------------------  186 (412)
T KOG3881|consen  134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--------------------------  186 (412)
T ss_pred             CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee--------------------------
Confidence            544222222222222 34555555553 3345557777  67788887654222                          


Q ss_pred             eeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 002564          376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS  455 (907)
Q Consensus       376 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~  455 (907)
                                                   |...+-.                       +. +     -+=.|-+     
T Consensus       187 -----------------------------w~aKNvp-----------------------nD-~-----L~LrVPv-----  203 (412)
T KOG3881|consen  187 -----------------------------WSAKNVP-----------------------ND-R-----LGLRVPV-----  203 (412)
T ss_pred             -----------------------------eeccCCC-----------------------Cc-c-----ccceeee-----
Confidence                                         1111100                       00 0     0001222     


Q ss_pred             CccceeeeccccccccCcCCcEEEEEEcCC--CCEEEEEecCCeEEEEECCCC-ceeeeeecC-cceeEEEEeeCCCEEE
Q 002564          456 GISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNGLLA  531 (907)
Q Consensus       456 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~s~~~~~la  531 (907)
                                          .++++.|-+.  ...+++++.-+.+++||...+ +++..+... .+++++...|.+++++
T Consensus       204 --------------------W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy  263 (412)
T KOG3881|consen  204 --------------------WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY  263 (412)
T ss_pred             --------------------eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE
Confidence                                3455666665  778999999999999999865 466666654 8999999999999999


Q ss_pred             EEeCCCeEEEEEcccceeEEE-eecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCC
Q 002564          532 TVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPN  609 (907)
Q Consensus       532 ~~~~dg~I~v~d~~~~~~~~~-~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spd  609 (907)
                      +|..-+.+..||+++++.... +.|-.+.|+++..+|.+++|+++|.|..|||+|+++.+++......+.++++.+.++
T Consensus       264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            999999999999999998877 889999999999999999999999999999999999888888877777888777654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.58  E-value=8.6e-14  Score=142.14  Aligned_cols=95  Identities=15%  Similarity=0.293  Sum_probs=88.1

Q ss_pred             cCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEE
Q 002564          473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR  551 (907)
Q Consensus       473 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~  551 (907)
                      -.+.|..++|+|||++||+.+.||.+||+|+.+.+++...+.- +...|++|||||++|++|++|.-|.||.+..++++.
T Consensus       289 ~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  289 GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA  368 (636)
T ss_pred             ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence            3458999999999999999999999999999998887766543 889999999999999999999999999999999999


Q ss_pred             EeecCCCCeeeEEECC
Q 002564          552 KFEGHTDRITDFCFSE  567 (907)
Q Consensus       552 ~~~~h~~~I~~l~fsp  567 (907)
                      .-+||...|+.++|.|
T Consensus       369 RGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccccccceeeEeecc
Confidence            9999999999999987

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.57  E-value=1e-13  Score=141.64  Aligned_cols=239  Identities=17%  Similarity=0.340  Sum_probs=174.0

Q ss_pred             eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEE-----cCCCCCCEEEEEecCCcEEEEecCCCeEEEE
Q 002564          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIM-----HPDTYLNKVIVGSQEGSLQLWNISTKKKLYE  176 (907)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~  176 (907)
                      .|++|+-.- -..+.+|+...+.....++....+.......-.|     .|.+  --+++|-..|.+++.|....+..+.
T Consensus       134 ~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g--~dllIGf~tGqvq~idp~~~~~skl  210 (636)
T KOG2394|consen  134 KGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKG--LDLLIGFTTGQVQLIDPINFEVSKL  210 (636)
T ss_pred             CCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCC--cceEEeeccCceEEecchhhHHHHh
Confidence            367776643 4568899988765544445444443322222222     2334  3588888889999998755322221


Q ss_pred             Ec----CCCCCEEEEEEcCCCC-EEEEEecCCeEEEEEccC--------------C--------------ceEEEEeecC
Q 002564          177 FK----GWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRY--------------D--------------EELVTFTHSM  223 (907)
Q Consensus       177 ~~----~h~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~--------------~--------------~~~~~~~~~~  223 (907)
                      +.    -....|+|+.|-|.++ .++++-.+|.+.+||...              +              .++..+... 
T Consensus       211 fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~-  289 (636)
T KOG2394|consen  211 FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIG-  289 (636)
T ss_pred             hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEec-
Confidence            21    1257899999999654 566677889999997531              1              112222222 


Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (907)
                      .+.|...+|+|||+ +||+.+.||.++|||..+.+++..++ ..-+...|++|+|||+++++|+.|--|.||.+...   
T Consensus       290 ~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er---  364 (636)
T KOG2394|consen  290 EGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER---  364 (636)
T ss_pred             cccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEeccc---
Confidence            46889999999999 99999999999999999999988887 77789999999999999999999999999988755   


Q ss_pred             cceeEeccCCCCCCeEEEEec-----------------------------------CC-------------CEEEEEeCC
Q 002564          304 PRLLRFRSGHSAPPLCIRFYA-----------------------------------NG-------------RHILSAGQD  335 (907)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~-----------------------------------~g-------------~~l~s~~~d  335 (907)
                       +++..-.+|...|..++|.|                                   ++             -.|.+.+.|
T Consensus       365 -RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqD  443 (636)
T KOG2394|consen  365 -RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQD  443 (636)
T ss_pred             -eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeeccccc
Confidence             77778889999999999982                                   01             146688899


Q ss_pred             CCEEEEEceecccce
Q 002564          336 RAFRLFSVIQDQQSR  350 (907)
Q Consensus       336 g~i~iwd~~~~~~~~  350 (907)
                      ..+.+||+..+....
T Consensus       444 TqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  444 TQLCLWDLTEDVLVP  458 (636)
T ss_pred             ceEEEEecchhhccc
Confidence            999999997665433

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=7.2e-13  Score=136.51  Aligned_cols=275  Identities=12%  Similarity=0.184  Sum_probs=197.4

Q ss_pred             cCCcceeEEEcCCeEEEEEEe-CCeEEEEEcCcceEEEecCCCCcceEEEEEecCeE---EEEEcCeEEEEeCCee-EEE
Q 002564           14 TSSVPFSVQRLGTENFVTVSV-GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYT---FAAYGNHIAVVKRAHQ-VAT   88 (907)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~-~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~---~~a~g~~I~vw~~~~~-~~~   88 (907)
                      |+.+..+   ++++|+++++. --.|++||+.++.+.+..+-....|.-.-.+.|..   ++-....|.+-..... ..+
T Consensus        54 st~ik~s---~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~  130 (703)
T KOG2321|consen   54 STRIKVS---PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRT  130 (703)
T ss_pred             cceeEec---CCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeee
Confidence            4555555   88888876665 77899999999999988754445555555666632   2222222433221111 111


Q ss_pred             EcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEec
Q 002564           89 WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI  168 (907)
Q Consensus        89 ~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~  168 (907)
                      -.+..+.=.+..--.--|+.++....|.-.+++.|..    +..+....+....|.+++-.  .+|++|+.+|.|..||.
T Consensus       131 RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf----L~P~~~~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDp  204 (703)
T KOG2321|consen  131 RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF----LNPFETDSGELNVVSINEEH--GLLACGTEDGVVEFWDP  204 (703)
T ss_pred             ecCcCCccccccCCCccEEEeecCcceEEEEcccccc----ccccccccccceeeeecCcc--ceEEecccCceEEEecc
Confidence            0011111111111122345555567799999999988    67777777888888899888  78999999999999999


Q ss_pred             CCCeEEEEEc------CCCC-----CEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCC
Q 002564          169 STKKKLYEFK------GWGS-----SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (907)
Q Consensus       169 ~~~~~~~~~~------~h~~-----~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~  237 (907)
                      ++...+.++.      .|.+     .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-.+...-+|..+.|.+.+.
T Consensus       205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence            8877666553      2333     4999999999999999999999999999999999888777677999999977632


Q ss_pred             -CEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564          238 -PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (907)
Q Consensus       238 -~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (907)
                       ..+++. ....++|||-.+|+....+.  ....+..+++.|++.+++++-.+..+..|-+...
T Consensus       285 q~~v~S~-Dk~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  285 QNKVVSM-DKRILKIWDECTGKPMASIE--PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             CceEEec-chHHhhhcccccCCceeecc--ccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence             245544 46789999999999998887  4556999999999999999998887777755443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=1.9e-13  Score=134.67  Aligned_cols=267  Identities=18%  Similarity=0.281  Sum_probs=191.4

Q ss_pred             CCCEEEEEEcCCCC--EEEEEecCCeEEEEEccCCceEEEE-----eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEE
Q 002564          181 GSSISSCVSSPALD--VVAVGCSDGKIHVHNVRYDEELVTF-----THSMRGAVTALAFSSDGQPLLASGASSGVISIWN  253 (907)
Q Consensus       181 ~~~I~~l~~sp~~~--~la~g~~dg~I~iwd~~~~~~~~~~-----~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd  253 (907)
                      ...|+.++|.-+++  .+...+.+..+..+...........     .....++|..++.. ||  .|++|-.+|.+.+|.
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg--~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG--TLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC--EEEEEecCCcEEEEe
Confidence            45677788876554  4444446666777666655544432     11124677777765 44  578888999999999


Q ss_pred             CCCce----eeeeeecccccCeEEEEEecCCC-EEEEEcCC--CcEEEEEccCCCCCcceeEecc---C--CCCCCeEEE
Q 002564          254 LEKRR----LQSVIREAHDNAIISLHFFANEP-VLMSASAD--NSIKMWIFDTTDGDPRLLRFRS---G--HSAPPLCIR  321 (907)
Q Consensus       254 ~~~~~----~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d--~~i~vw~~~~~~~~~~~~~~~~---~--h~~~v~~i~  321 (907)
                      .+.+.    .+..+.  ...++..+.-++..+ ++++||..  +.+++||+......+......+   +  -.-.++.+.
T Consensus       132 ~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             ccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence            88542    222222  335667777777655 45558888  8899999876522111100000   0  112467888


Q ss_pred             EecC--CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCC
Q 002564          322 FYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (907)
Q Consensus       322 ~~~~--g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  399 (907)
                      |.+.  ...|++++.-+.+|+||.+.++.                          |+..+++                  
T Consensus       210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRR--------------------------PV~~fd~------------------  245 (412)
T KOG3881|consen  210 FLEGSPNYKFATITRYHQVRLYDTRHQRR--------------------------PVAQFDF------------------  245 (412)
T ss_pred             ecCCCCCceEEEEecceeEEEecCcccCc--------------------------ceeEecc------------------
Confidence            9886  78999999999999999875432                          2222222                  


Q ss_pred             ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEE
Q 002564          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG  479 (907)
Q Consensus       400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~  479 (907)
                                             ...+++++...|+|+++++|...|.+..||+..+.......       .+..+.|++
T Consensus       246 -----------------------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~-------kg~tGsirs  295 (412)
T KOG3881|consen  246 -----------------------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL-------KGITGSIRS  295 (412)
T ss_pred             -----------------------ccCcceeeeecCCCcEEEEecccchhheecccCceeecccc-------CCccCCcce
Confidence                                   23789999999999999999999999999999999888743       488999999


Q ss_pred             EEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeC
Q 002564          480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV  526 (907)
Q Consensus       480 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~  526 (907)
                      +..+|.+++++++|.|..|||+|+++.+++........++++.+.++
T Consensus       296 ih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  296 IHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             EEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            99999999999999999999999999888888777788888777653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.56  E-value=5.3e-09  Score=123.78  Aligned_cols=478  Identities=14%  Similarity=0.106  Sum_probs=277.7

Q ss_pred             cccceEEEEe--eCCEEEEEecCCcEEEE----ecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEE
Q 002564           92 HSAKVNLLLL--FGEHILSIDIDGNMFIW----AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL  165 (907)
Q Consensus        92 h~~~V~~l~~--~g~~l~s~~~dg~v~vW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~i  165 (907)
                      ..+.|.++.+  +...|+.+..+|.|.+.    +..+...  ..+..   -...+..++|+||.  ..|+..+.+|++.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~---vd~GI~a~~WSPD~--Ella~vT~~~~l~~  146 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI--EIVGS---VDSGILAASWSPDE--ELLALVTGEGNLLL  146 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee--EEEEE---EcCcEEEEEECCCc--CEEEEEeCCCEEEE
Confidence            3467888875  67788888999999998    4433322  11222   34556788899999  88999999998887


Q ss_pred             EecCCCeEEE------------------------EEcC------------------------CCCCEEEEEEcCCCCEEE
Q 002564          166 WNISTKKKLY------------------------EFKG------------------------WGSSISSCVSSPALDVVA  197 (907)
Q Consensus       166 wd~~~~~~~~------------------------~~~~------------------------h~~~I~~l~~sp~~~~la  197 (907)
                      .+ ++..++.                        .|+|                        +...-..++|-.||.++|
T Consensus       147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA  225 (928)
T PF04762_consen  147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA  225 (928)
T ss_pred             Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence            64 2222221                        1111                        122446788999999999


Q ss_pred             EEec---C---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeC---CCcEEEEECCCceeeeeeec---
Q 002564          198 VGCS---D---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS---SGVISIWNLEKRRLQSVIRE---  265 (907)
Q Consensus       198 ~g~~---d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~---dg~I~iwd~~~~~~~~~~~~---  265 (907)
                      +.+-   .   ..++||+-+ |....+-. .-.+--.+++|.|.|. ++|+...   ...|.+|.- +|-....+..   
T Consensus       226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~  301 (928)
T PF04762_consen  226 VSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFER-NGLRHGEFTLRFD  301 (928)
T ss_pred             EEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEec-CCcEeeeEecCCC
Confidence            8874   2   579999965 55433333 3345567899999999 7777653   356777773 4433333321   


Q ss_pred             ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEecc-CCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEc
Q 002564          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV  343 (907)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~  343 (907)
                      .....|..+.|++|+..|+....|. |.+|-..  +..+-+.+.+. .....+..+.|+| +...|...+.+|.+..++.
T Consensus       302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~--NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS--NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCCceeeEEEECCCCCEEEEEecCC-ceEEEee--CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            3466899999999999999987655 9999543  33333333332 2233455699999 5666777777787776654


Q ss_pred             eecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCC
Q 002564          344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN  423 (907)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~  423 (907)
                      .-.....                                ..... .+.-.++--++..+.+-.+.............-..
T Consensus       379 ~~~v~~s--------------------------------~~~~~-~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~  425 (928)
T PF04762_consen  379 AWDVSRS--------------------------------PGSSP-NDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL  425 (928)
T ss_pred             EEEEEec--------------------------------CCCCc-cCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence            3211100                                00000 01112233344455555554443322221111233


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccce--------eeecc--ccccccCcCCcEEEEEEcCCCCEEEEEe
Q 002564          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG--------SYLDM--SERSNYAHNGEVVGVACDSTNTLMISAG  493 (907)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~--------~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~  493 (907)
                      +..|.+++|++++..+++-+.+|.+.+|.........        .+...  ...........+..++|..++..++...
T Consensus       426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (928)
T PF04762_consen  426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD  505 (928)
T ss_pred             CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Confidence            5789999999999999999999999999865443221        11100  0000012245678888888877766665


Q ss_pred             cC---CeEEEEECCCCce---eee-eecCcceeEEEEeeCCCEEEEEeCCCeEEEEEccccee-EEEeecCCCCeeeEEE
Q 002564          494 YH---GDIKVWDFKGRDL---KSR-WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCF  565 (907)
Q Consensus       494 ~d---g~i~iwd~~~~~~---~~~-~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~-~~~~~~h~~~I~~l~f  565 (907)
                      .+   ..+.++++...+.   ... ......+..+...++...++.-..+|.+..++...... +..|......+..+.+
T Consensus       506 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~  585 (928)
T PF04762_consen  506 SDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQI  585 (928)
T ss_pred             cCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEE
Confidence            54   6788888743322   122 22235555555555555577777788888666554322 2223222222222222


Q ss_pred             CCCC--cEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          566 SEDG--KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       566 spdg--~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                      ....  ..++.-+..|.+++    .++.+     ...|+++..+  +.+|+.+.... .+++..+.
T Consensus       586 ~~~~~~~~~~GLs~~~~Ly~----n~~~l-----a~~~tSF~v~--~~~Ll~TT~~h-~l~fv~L~  639 (928)
T PF04762_consen  586 NGSEDKRVLFGLSSNGRLYA----NSRLL-----ASNCTSFAVT--DSFLLFTTTQH-TLKFVHLN  639 (928)
T ss_pred             CCccceeEEEEECCCCEEEE----CCEEE-----ecCCceEEEE--cCEEEEEecCc-eEEEEECc
Confidence            2221  13333344444433    12222     3567888874  46666666655 47777765

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.1e-12  Score=144.34  Aligned_cols=236  Identities=13%  Similarity=0.145  Sum_probs=156.9

Q ss_pred             cEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (907)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~---dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~  238 (907)
                      .|.+||...... +.+..+...+.+.+|||||+.|+..+.   +..|.+|++.+++.......  .+.+.+.+|+|||+.
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~~~SPDG~~  256 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAPAFSPDGSK  256 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCeEECCCCCE
Confidence            689999865443 444456778999999999999886542   35799999988764332221  344567899999994


Q ss_pred             EEEEEeCCC--cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCC
Q 002564          239 LLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (907)
Q Consensus       239 ~l~sg~~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (907)
                      ++++.+.+|  .|.+||+.+++......  +...+....|+|||+.|+.++. ++...+|.++..++..+.+   ..+..
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l---t~~~~  331 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI---TWEGS  331 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe---ecCCC
Confidence            544545455  58999998887654433  4456789999999998877665 4567777666554433322   22334


Q ss_pred             CCeEEEEecCCCEEEEEeCCC---CEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccce
Q 002564          316 PPLCIRFYANGRHILSAGQDR---AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV  392 (907)
Q Consensus       316 ~v~~i~~~~~g~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  392 (907)
                      ......|+|||++++..+.++   .|.+||+.++... .+                                        
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~L----------------------------------------  370 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL----------------------------------------  370 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ee----------------------------------------
Confidence            456789999999998766442   3566665443211 10                                        


Q ss_pred             EEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCc---EEEEeCCCCccceeeecccccc
Q 002564          393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW---IERFNLQSGISRGSYLDMSERS  469 (907)
Q Consensus       393 ~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~---i~i~d~~~~~~~~~~~~~~~~~  469 (907)
                                               ..  .  .......|+|||++++.++.++.   +.++++. |.....+.      
T Consensus       371 -------------------------t~--~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~------  414 (429)
T PRK03629        371 -------------------------TD--T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP------  414 (429)
T ss_pred             -------------------------CC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc------
Confidence                                     00  0  11234679999999999887764   6677774 44444443      


Q ss_pred             ccCcCCcEEEEEEcC
Q 002564          470 NYAHNGEVVGVACDS  484 (907)
Q Consensus       470 ~~~h~~~v~~l~~s~  484 (907)
                        +|.+.+...+|+|
T Consensus       415 --~~~~~~~~p~Wsp  427 (429)
T PRK03629        415 --ATDGQVKFPAWSP  427 (429)
T ss_pred             --cCCCCcCCcccCC
Confidence              6778888888887

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.55  E-value=9.2e-12  Score=119.71  Aligned_cols=237  Identities=14%  Similarity=0.230  Sum_probs=168.7

Q ss_pred             EEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCC--CEEEEEEcCCCCEEE-EEecC------CeEEEEEccC
Q 002564          142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS--SISSCVSSPALDVVA-VGCSD------GKIHVHNVRY  212 (907)
Q Consensus       142 ~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~--~I~~l~~sp~~~~la-~g~~d------g~I~iwd~~~  212 (907)
                      ++.|+-|.  ..+++|..+| .+||+.+.-+.......+.+  .+.-|-|-  .++|| +|+.+      ..+.|||-..
T Consensus        10 svs~NQD~--ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen   10 SVSFNQDH--SCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             EEEEccCC--ceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEeccc
Confidence            36677777  7788888887 99999876544333222222  23333332  34554 44333      5799999777


Q ss_pred             CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECC-Cceeeeeeecc-cccCeEEEEEecCCCEEEEEc-CC
Q 002564          213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE-KRRLQSVIREA-HDNAIISLHFFANEPVLMSAS-AD  289 (907)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~~-~d  289 (907)
                      .+++.++...  .+|.++.++++   .+++.- .+.|.||... +.+.++.+... ......+++-..+..+|+.-| .-
T Consensus        85 ~~~i~el~f~--~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~  158 (346)
T KOG2111|consen   85 ERCIIELSFN--SEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT  158 (346)
T ss_pred             CcEEEEEEec--cceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence            7788887764  89999999987   344443 5799999987 44666665521 233445554444445666544 36


Q ss_pred             CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC-EEEEEceecccceeechhhhhHHHhhccchh
Q 002564          290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA-FRLFSVIQDQQSRELSQRHVAKRARKLKMKE  368 (907)
Q Consensus       290 ~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (907)
                      |.|.+-++......  .-.....|...|.|++.+-+|..++|++..|+ ||+||..++....++..+.            
T Consensus       159 GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------------  224 (346)
T KOG2111|consen  159 GQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------------  224 (346)
T ss_pred             ceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC------------
Confidence            89999988765431  22445699999999999999999999999998 5999999998888765421            


Q ss_pred             hhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcE
Q 002564          369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI  448 (907)
Q Consensus       369 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  448 (907)
                                                                            ....+.+++|||++.++++.+..|++
T Consensus       225 ------------------------------------------------------d~A~iy~iaFSp~~s~LavsSdKgTl  250 (346)
T KOG2111|consen  225 ------------------------------------------------------DRADIYCIAFSPNSSWLAVSSDKGTL  250 (346)
T ss_pred             ------------------------------------------------------chheEEEEEeCCCccEEEEEcCCCeE
Confidence                                                                  13679999999999999999999999


Q ss_pred             EEEeCCCCc
Q 002564          449 ERFNLQSGI  457 (907)
Q Consensus       449 ~i~d~~~~~  457 (907)
                      ++|.+....
T Consensus       251 HiF~l~~~~  259 (346)
T KOG2111|consen  251 HIFSLRDTE  259 (346)
T ss_pred             EEEEeecCC
Confidence            999987643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.55  E-value=7.3e-11  Score=126.34  Aligned_cols=306  Identities=15%  Similarity=0.178  Sum_probs=198.3

Q ss_pred             EEEEeCC----CcEEEEEC--CCceeeeeeecccccCeEEEEEecCCCEEEEEcC----CCcEEEEEccCCCCCcceeEe
Q 002564          240 LASGASS----GVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASA----DNSIKMWIFDTTDGDPRLLRF  309 (907)
Q Consensus       240 l~sg~~d----g~I~iwd~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----d~~i~vw~~~~~~~~~~~~~~  309 (907)
                      +++|+..    +.|.+|++  +++++...-..........++++|++++|.++..    ++.|..|.++..++....+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            3445544    68888887  5554433222234556788999999999998876    578999998876555555555


Q ss_pred             ccCCCCCCeEEEEecCCCEEEEEe-CCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccccc
Q 002564          310 RSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD  388 (907)
Q Consensus       310 ~~~h~~~v~~i~~~~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  388 (907)
                      .......+..++++|++++|+++. .+|.+.++++...........                                  
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~----------------------------------  127 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ----------------------------------  127 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE----------------------------------
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee----------------------------------
Confidence            544556778899999999999886 589999999876432222110                                  


Q ss_pred             ccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCc--cce--eee
Q 002564          389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERFNLQSGI--SRG--SYL  463 (907)
Q Consensus       389 ~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~i~d~~~~~--~~~--~~~  463 (907)
                                     ++....     .-..+.........++.++|+|+++++... ...|.+|++....  ...  .+.
T Consensus       128 ---------------~~~~~g-----~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~  187 (345)
T PF10282_consen  128 ---------------TVRHEG-----SGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK  187 (345)
T ss_dssp             ---------------EEESEE-----EESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE
T ss_pred             ---------------ecccCC-----CCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc
Confidence                           000000     000111223467889999999999888764 3589999987665  211  111


Q ss_pred             ccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECC--CCce--eeeeec-------CcceeEEEEeeCCCEEE
Q 002564          464 DMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK--GRDL--KSRWEV-------GCSLVKIVYHRVNGLLA  531 (907)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~--~~~~--~~~~~~-------~~~i~~~~~s~~~~~la  531 (907)
                             .......+.++|+|++++++... .++.|.++++.  ++..  +..+..       ......++++|||++|.
T Consensus       188 -------~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly  260 (345)
T PF10282_consen  188 -------VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY  260 (345)
T ss_dssp             -------CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE
T ss_pred             -------cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEE
Confidence                   24556789999999999886665 67889999988  4422  222221       12578899999999988


Q ss_pred             EEeC-CCeEEEEEcc--cc--eeEEEeecCCCCeeeEEECCCCcEEEEEe-CCCcEEEEEc--CCCceeeEee--eCCce
Q 002564          532 TVAD-DLVIRLFDVV--AL--RMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILARQIDAIH--VDVSI  601 (907)
Q Consensus       532 ~~~~-dg~I~v~d~~--~~--~~~~~~~~h~~~I~~l~fspdg~~l~s~s-~Dg~I~vwd~--~~~~~~~~~~--~~~~v  601 (907)
                      ++.. .+.|.+|++.  ++  +.+..+.........++++|+|++|+++. .++.|.+|++  .+|.+...-.  .-...
T Consensus       261 vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p  340 (345)
T PF10282_consen  261 VSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSP  340 (345)
T ss_dssp             EEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSE
T ss_pred             EEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCC
Confidence            8764 5789999993  23  34445554445578999999999999877 5678999976  5676554432  12225


Q ss_pred             EEEEE
Q 002564          602 TALSL  606 (907)
Q Consensus       602 ~~l~~  606 (907)
                      .|+.|
T Consensus       341 ~ci~f  345 (345)
T PF10282_consen  341 VCIVF  345 (345)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            56655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.54  E-value=2.8e-11  Score=129.53  Aligned_cols=281  Identities=15%  Similarity=0.216  Sum_probs=186.1

Q ss_pred             EEEEcCC----CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC----CCCEEEEEceec-ccceeec
Q 002564          283 LMSASAD----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ----DRAFRLFSVIQD-QQSRELS  353 (907)
Q Consensus       283 l~s~~~d----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~----dg~i~iwd~~~~-~~~~~~~  353 (907)
                      ++.|+..    +.|.+|+++..++....+... .....+..++++|++++|++...    ++.|..|++... .....+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            3445544    789999998777655555442 34456678999999999998876    467777776654 1111111


Q ss_pred             hhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEc
Q 002564          354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS  433 (907)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s  433 (907)
                      .                                                             . .   ........++++
T Consensus        81 ~-------------------------------------------------------------~-~---~~g~~p~~i~~~   95 (345)
T PF10282_consen   81 S-------------------------------------------------------------V-P---SGGSSPCHIAVD   95 (345)
T ss_dssp             E-------------------------------------------------------------E-E---ESSSCEEEEEEC
T ss_pred             e-------------------------------------------------------------e-c---cCCCCcEEEEEe
Confidence            0                                                             0 0   012556789999


Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCC-Cccceeeecc-----ccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 002564          434 ACGNFAVLGT-AGGWIERFNLQS-GISRGSYLDM-----SERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG  505 (907)
Q Consensus       434 ~~g~~l~~g~-~dg~i~i~d~~~-~~~~~~~~~~-----~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~  505 (907)
                      |++++++++. .+|.|.+|++.. |.........     .............++.++|+++++++.. ....|.+|++..
T Consensus        96 ~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~  175 (345)
T PF10282_consen   96 PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD  175 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred             cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            9999998886 589999999987 3333321100     0000012234578899999999888876 445899999976


Q ss_pred             Cc--eee----eeecCcceeEEEEeeCCCEEEEEeC-CCeEEEEEcc--cce--eEEEeecC------CCCeeeEEECCC
Q 002564          506 RD--LKS----RWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV--ALR--MVRKFEGH------TDRITDFCFSED  568 (907)
Q Consensus       506 ~~--~~~----~~~~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~--~~~--~~~~~~~h------~~~I~~l~fspd  568 (907)
                      ..  +..    .+........++|+|+++++.+..+ ++.|.++++.  ++.  .+..+...      ......|+++||
T Consensus       176 ~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd  255 (345)
T PF10282_consen  176 DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD  255 (345)
T ss_dssp             TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT
T ss_pred             CCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC
Confidence            55  322    2344478899999999998877665 6789999998  443  33333221      125778999999


Q ss_pred             CcEEEEEe-CCCcEEEEEcC--CCce--eeEeeeCC-ceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          569 GKWLLSSG-MDGSLRIWDVI--LARQ--IDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       569 g~~l~s~s-~Dg~I~vwd~~--~~~~--~~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                      |++|.++. .+.+|.+|++.  +|++  +..+.... ....++++|+|++|+++..+++.|.+|++.
T Consensus       256 g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  256 GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            99988665 56789999993  3443  34444433 389999999999999999888889999864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=2.6e-12  Score=141.53  Aligned_cols=170  Identities=13%  Similarity=0.051  Sum_probs=119.1

Q ss_pred             eEEEEEcCCCCEEEEE-eCCC--cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecC-Ce--EEE
Q 002564          427 VKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-GD--IKV  500 (907)
Q Consensus       427 v~~~~~s~~g~~l~~g-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g~--i~i  500 (907)
                      ....+|+|||+.++.. +.+|  .|++||+.++......         .+...+....|+|+|+.|+..+.+ +.  |.+
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt---------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~  315 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT---------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK  315 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc---------CCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence            4467999999988865 4445  5889999887654432         334567889999999988776653 44  555


Q ss_pred             EECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC---CeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeC
Q 002564          501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  577 (907)
Q Consensus       501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~  577 (907)
                      +|+.+++...............|+|||++++..+.+   ..|.+||+.+++.. .+... .......|+|||++|+.++.
T Consensus       316 ~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        316 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             EECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEc
Confidence            577776554433333455678999999999887643   36889999888643 33322 23456789999999999887


Q ss_pred             CCc---EEEEEcCCCceeeEeee-CCceEEEEECC
Q 002564          578 DGS---LRIWDVILARQIDAIHV-DVSITALSLSP  608 (907)
Q Consensus       578 Dg~---I~vwd~~~~~~~~~~~~-~~~v~~l~~sp  608 (907)
                      ++.   +.++++ +|.....+.. ...+...+|+|
T Consensus       394 ~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        394 QGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            764   677777 4665566654 34588889987

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=7.9e-12  Score=138.50  Aligned_cols=232  Identities=14%  Similarity=0.054  Sum_probs=153.8

Q ss_pred             cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCC---CCEEEEEceecccceeechhhhhHHHhhccch
Q 002564          291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (907)
Q Consensus       291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  367 (907)
                      .|.+||.+..  .   .+.+..+...+.+.+|+|||+.|+..+.+   ..|.+|++.+++....                
T Consensus       185 ~l~i~D~~g~--~---~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l----------------  243 (433)
T PRK04922        185 ALQVADSDGY--N---PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV----------------  243 (433)
T ss_pred             EEEEECCCCC--C---ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe----------------
Confidence            5777766432  2   22234566789999999999999987643   3577777754332110                


Q ss_pred             hhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEE-eCCC
Q 002564          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG  446 (907)
Q Consensus       368 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg  446 (907)
                                                                        .   .......+..|+|+|+.++.. +.+|
T Consensus       244 --------------------------------------------------~---~~~g~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        244 --------------------------------------------------A---SFRGINGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             --------------------------------------------------c---cCCCCccCceECCCCCEEEEEEeCCC
Confidence                                                              0   011334567999999987654 4555


Q ss_pred             --cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCe--EEEEECCCCceeeeeecCcceeEE
Q 002564          447 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGD--IKVWDFKGRDLKSRWEVGCSLVKI  521 (907)
Q Consensus       447 --~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~i~~~  521 (907)
                        .|++||+.++.....         ..+.......+|+|+|+.++.++ .+|.  |.++|+.+++..............
T Consensus       271 ~~~Iy~~d~~~g~~~~l---------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~  341 (433)
T PRK04922        271 NPEIYVMDLGSRQLTRL---------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA  341 (433)
T ss_pred             CceEEEEECCCCCeEEC---------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence              699999988765432         14444556789999999888766 3444  666777776654433333345578


Q ss_pred             EEeeCCCEEEEEeCCC---eEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCC---CcEEEEEcCCCceeeEe
Q 002564          522 VYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAI  595 (907)
Q Consensus       522 ~~s~~~~~la~~~~dg---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D---g~I~vwd~~~~~~~~~~  595 (907)
                      +|+|+|+.++..+.++   .|.+||+.+++.. .+. +........|+|||++|+..+.+   +.|.++++. |.....+
T Consensus       342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l  418 (433)
T PRK04922        342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRL  418 (433)
T ss_pred             EECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEc
Confidence            9999999998876443   6999999887754 343 33345678999999998876653   458888875 4455555


Q ss_pred             ee-CCceEEEEECC
Q 002564          596 HV-DVSITALSLSP  608 (907)
Q Consensus       596 ~~-~~~v~~l~~sp  608 (907)
                      .. ...+...+|+|
T Consensus       419 ~~~~g~~~~p~wsp  432 (433)
T PRK04922        419 VSADGEVREPAWSP  432 (433)
T ss_pred             ccCCCCCCCCccCC
Confidence            43 34577788876

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.52  E-value=6.8e-11  Score=116.76  Aligned_cols=272  Identities=14%  Similarity=0.223  Sum_probs=187.6

Q ss_pred             CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCC---CCEEEEEceecccceeechhhhhHHHhhcc
Q 002564          289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLK  365 (907)
Q Consensus       289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  365 (907)
                      +.-|.+|++++..+....+.. -.+.+.++-++|+|++++|+++..+   |.+..|.+....                  
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~------------------   75 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD------------------   75 (346)
T ss_pred             CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC------------------
Confidence            567999999977765444433 3677889999999999999988655   556655554320                  


Q ss_pred             chhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe-C
Q 002564          366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-A  444 (907)
Q Consensus       366 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~  444 (907)
                                                        +.+..-+-            ......+.+.++++++|++++++. .
T Consensus        76 ----------------------------------G~Lt~ln~------------~~~~g~~p~yvsvd~~g~~vf~AnY~  109 (346)
T COG2706          76 ----------------------------------GRLTFLNR------------QTLPGSPPCYVSVDEDGRFVFVANYH  109 (346)
T ss_pred             ----------------------------------CeEEEeec------------cccCCCCCeEEEECCCCCEEEEEEcc
Confidence                                              11111110            001113448899999999998875 5


Q ss_pred             CCcEEEEeCCC-CccceeeeccccccccCcCCc----------EEEEEEcCCCCEEEEEe-cCCeEEEEECCCCceeee-
Q 002564          445 GGWIERFNLQS-GISRGSYLDMSERSNYAHNGE----------VVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSR-  511 (907)
Q Consensus       445 dg~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~----------v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~-  511 (907)
                      .|.|.++-++. |........      ..|.+.          +....++|++++|++.+ .--.|.+|++..+++... 
T Consensus       110 ~g~v~v~p~~~dG~l~~~v~~------~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~  183 (346)
T COG2706         110 SGSVSVYPLQADGSLQPVVQV------VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD  183 (346)
T ss_pred             CceEEEEEcccCCccccceee------eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc
Confidence            68999999866 433322211      123333          77889999999999887 335799999998876543 


Q ss_pred             ---eecCcceeEEEEeeCCCEEEEEeC-CCeEEEEEcccc-eeEEEeec---------CCCCeeeEEECCCCcEEEEEeC
Q 002564          512 ---WEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVAL-RMVRKFEG---------HTDRITDFCFSEDGKWLLSSGM  577 (907)
Q Consensus       512 ---~~~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~~~-~~~~~~~~---------h~~~I~~l~fspdg~~l~s~s~  577 (907)
                         ++.+.....+.|+|++++..+.++ +++|.+|..+.. ..+..++.         -.....+|..+|||++|.++..
T Consensus       184 ~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         184 PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence               344578899999999999888776 789999998873 22222222         1245678899999999997642


Q ss_pred             -CCcEEEEEcCC--Ccee--eEeeeCCc-eEEEEECCCCceEEEEEecCCeEEEeecccc
Q 002564          578 -DGSLRIWDVIL--ARQI--DAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCM  631 (907)
Q Consensus       578 -Dg~I~vwd~~~--~~~~--~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~~~~  631 (907)
                       ...|.+|.+..  |++.  .....+.. .....|+|+|++|++++.++..|.++.....
T Consensus       264 g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         264 GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence             23688887754  3322  22222333 7899999999999999999988999987543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.5e-12  Score=143.53  Aligned_cols=178  Identities=13%  Similarity=0.123  Sum_probs=122.5

Q ss_pred             CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCC
Q 002564          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (907)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~  237 (907)
                      ..|.++|. +|.....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +... .+.+.+.+|+|||+
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~-~g~~~~~~~SPDG~  252 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANF-KGSNSAPAWSPDGR  252 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecC-CCCccceEECCCCC
Confidence            35777786 555555666778899999999999999877643   469999999887543 3222 35677899999998


Q ss_pred             CEEEEEeCCCcEEEEE--CCCceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCC
Q 002564          238 PLLASGASSGVISIWN--LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS  314 (907)
Q Consensus       238 ~~l~sg~~dg~I~iwd--~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (907)
                      .++++.+.+|...||.  +.++. ...+. .+........|+|||+.|+..+. ++...+|.++..++..+.+. ..  .
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~--g  327 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FT--G  327 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cC--C
Confidence            5555667777766664  54444 33444 45556677899999998876654 57788888775544333332 22  2


Q ss_pred             CCCeEEEEecCCCEEEEEeCCC---CEEEEEceec
Q 002564          315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQD  346 (907)
Q Consensus       315 ~~v~~i~~~~~g~~l~s~~~dg---~i~iwd~~~~  346 (907)
                      .......|+|||++++..+.++   .|.+||+.++
T Consensus       328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            2344678999999998777554   4777776543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.51  E-value=3.1e-11  Score=123.23  Aligned_cols=335  Identities=15%  Similarity=0.201  Sum_probs=218.4

Q ss_pred             EEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEE
Q 002564          206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS  285 (907)
Q Consensus       206 ~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  285 (907)
                      .+|+..+...-..+.. ..-++...+|||.|. +|++... ..|.+|.-.....+..+.  | ..|..+.|+|++++|.+
T Consensus        15 ~f~~~~s~~~~~~~~~-~~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~t   88 (561)
T COG5354          15 VFWNSQSEVIHTRFES-ENWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVT   88 (561)
T ss_pred             EeecCccccccccccc-cCcchhheeecCcch-heehhhc-cceEEccccchhheeeee--c-CCceecccCcccceeee
Confidence            4555555554444443 256899999999999 6776554 569999988877665555  4 46899999999999998


Q ss_pred             EcCC---------------CcEEEEEccCCCCCcceeEeccCCCCC--Ce-EEEEecCCCEEEEEeCCCCEEEEEceecc
Q 002564          286 ASAD---------------NSIKMWIFDTTDGDPRLLRFRSGHSAP--PL-CIRFYANGRHILSAGQDRAFRLFSVIQDQ  347 (907)
Q Consensus       286 ~~~d---------------~~i~vw~~~~~~~~~~~~~~~~~h~~~--v~-~i~~~~~g~~l~s~~~dg~i~iwd~~~~~  347 (907)
                      =+..               +.+.+||+..+    .++..+.+...+  .. -+.|+-+.++++-. ....+.++++ ++.
T Consensus        89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg----~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n  162 (561)
T COG5354          89 WSREPIIEPEIEISPFTSKNNVFVWDIASG----MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN  162 (561)
T ss_pred             eccCCccChhhccCCccccCceeEEeccCc----eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCc
Confidence            6543               34889987655    566666665555  44 56777777666644 2335777775 221


Q ss_pred             cceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCce
Q 002564          348 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV  427 (907)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v  427 (907)
                      .. ...                                                            .+.+     ....+
T Consensus       163 ~~-~~p------------------------------------------------------------~~~l-----r~~gi  176 (561)
T COG5354         163 IE-EHP------------------------------------------------------------FKNL-----RPVGI  176 (561)
T ss_pred             cc-cCc------------------------------------------------------------hhhc-----cccce
Confidence            11 000                                                            0000     01445


Q ss_pred             EEEEEcCCCCE--EEE-----EeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-------
Q 002564          428 KACTISACGNF--AVL-----GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-------  493 (907)
Q Consensus       428 ~~~~~s~~g~~--l~~-----g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-------  493 (907)
                      ...+++|.|+.  ++.     +...+.+++|.+..+..+....        -....=..+.|.+.|++++.--       
T Consensus       177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~--------lfk~~~~qLkW~~~g~~ll~l~~t~~ksn  248 (561)
T COG5354         177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN--------LFKVSGVQLKWQVLGKYLLVLVMTHTKSN  248 (561)
T ss_pred             eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--------eEeecccEEEEecCCceEEEEEEEeeecc
Confidence            56666665432  222     2355678888887665554432        1122223566777777665321       


Q ss_pred             ----cCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEe--CCCeEEEEEcccceeEEEeecCCCCeeeEEECC
Q 002564          494 ----YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE  567 (907)
Q Consensus       494 ----~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~--~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp  567 (907)
                          ....+.++++......-.....++|...+|.|.++.+++.+  .+..+.++|+... +.  +......=+.+.|||
T Consensus       249 KsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp  325 (561)
T COG5354         249 KSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSP  325 (561)
T ss_pred             cceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccC
Confidence                23568888887555444445579999999999988776654  6778999999866 33  333455667789999


Q ss_pred             CCcEEEEEeCC---CcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEec-----CCeEEEeecc
Q 002564          568 DGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD-----QNGVYLWVNR  629 (907)
Q Consensus       568 dg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d-----~~~i~lW~~~  629 (907)
                      .++|++.++-|   |.|-+||......+..--.....+-+.|+|||+|+-++...     .++|.||++-
T Consensus       326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             cccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            99999998865   78999998755444422223346677899999998887532     2369999974

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2e-12  Score=143.28  Aligned_cols=178  Identities=16%  Similarity=0.134  Sum_probs=122.9

Q ss_pred             CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCC
Q 002564          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (907)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~  237 (907)
                      ..|.+||.. +...+.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +... .+...+.+|+|||+
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~-~g~~~~~~~SpDG~  260 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASF-RGINGAPSFSPDGR  260 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccC-CCCccCceECCCCC
Confidence            368999985 55555566677889999999999999987643   469999998876543 2222 34566889999999


Q ss_pred             CEEEEEeCCC--cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCCC
Q 002564          238 PLLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS  314 (907)
Q Consensus       238 ~~l~sg~~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (907)
                      .++++.+.+|  .|.+||+.+++... +. .+.......+|+|||+.|+.++ .++...+|.++..++..+.+.   .+.
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt---~~g  335 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLTR-LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT---FQG  335 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee---cCC
Confidence            5555666555  59999998887543 33 4555567889999999888766 355656665554443323222   222


Q ss_pred             CCCeEEEEecCCCEEEEEeCCC---CEEEEEceec
Q 002564          315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQD  346 (907)
Q Consensus       315 ~~v~~i~~~~~g~~l~s~~~dg---~i~iwd~~~~  346 (907)
                      ......+|+|||++++..+.++   .|.+|++.++
T Consensus       336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g  370 (433)
T PRK04922        336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG  370 (433)
T ss_pred             CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence            3345789999999998765443   4777776543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.50  E-value=2e-12  Score=125.18  Aligned_cols=247  Identities=17%  Similarity=0.270  Sum_probs=183.1

Q ss_pred             EEEEcccccceEEEE--eeCCEEEEEecCCcEEEEec-CCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCc
Q 002564           86 VATWSRHSAKVNLLL--LFGEHILSIDIDGNMFIWAF-KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS  162 (907)
Q Consensus        86 ~~~~~~h~~~V~~l~--~~g~~l~s~~~dg~v~vWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~  162 (907)
                      +..++||.+.|.+..  +-...+++++.|.+++||-- +.++. .+.+...  -+.......+++..  .+|++|-.+|+
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~-wpsI~~~--mP~~~~~~~y~~e~--~~L~vg~~ngt   91 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY-WPSIYHY--MPSPCSAMEYVSES--RRLYVGQDNGT   91 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc-Cchhhhh--CCCCceEeeeeccc--eEEEEEEecce
Confidence            344789988888755  46788999999999999954 44444 2222211  22334455577777  78999999999


Q ss_pred             EEEEec----CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564          163 LQLWNI----STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (907)
Q Consensus       163 i~iwd~----~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~  238 (907)
                      +.-+.+    +....++....|...|..+.|+-...++++.+.|..+.-.-.+.+..+..+...  .+.+++.|.-.   
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--~~~t~~~~d~~---  166 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE--TPASALQFDAL---  166 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee--ccCCCCceeeE---
Confidence            988854    344556667789999999999999999999999988766666677665554432  22222222221   


Q ss_pred             EEEEEeCCCcEEEEECC--CceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCC
Q 002564          239 LLASGASSGVISIWNLE--KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP  316 (907)
Q Consensus       239 ~l~sg~~dg~I~iwd~~--~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~  316 (907)
                      +...|...|.|.+-.+.  .-.++.++. +|.+.+.+++|.+...+|++|..|..+.+||+-...+   ......+|...
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g---~~~el~gh~~k  242 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG---TAYELQGHNDK  242 (404)
T ss_pred             EEEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc---eeeeeccchhh
Confidence            44556666666665543  446677777 9999999999999999999999999999999876654   34556799999


Q ss_pred             CeEEEEecCCCEEEEEeCCCCEEEEEceec
Q 002564          317 PLCIRFYANGRHILSAGQDRAFRLFSVIQD  346 (907)
Q Consensus       317 v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~  346 (907)
                      |..+.+.+--+.+++++.||.|.+|+....
T Consensus       243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  243 VQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            999999998899999999999999998643

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.49  E-value=2.2e-12  Score=124.47  Aligned_cols=148  Identities=20%  Similarity=0.349  Sum_probs=110.2

Q ss_pred             EEEEEcCCCCEEEEEec----------CCeEEEEECC-CCceeeeeec--CcceeEEEEeeCCCEEEEEe--CCCeEEEE
Q 002564          478 VGVACDSTNTLMISAGY----------HGDIKVWDFK-GRDLKSRWEV--GCSLVKIVYHRVNGLLATVA--DDLVIRLF  542 (907)
Q Consensus       478 ~~l~~s~~~~~l~s~~~----------dg~i~iwd~~-~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~--~dg~I~v~  542 (907)
                      ..+.|++.|.+|+.-..          -|...+|.++ .......+..  .++|.+++|+|+|+.+|+..  .++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45778888877664432          1334555552 2233444433  35799999999999876653  56799999


Q ss_pred             EcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCC---CcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEec
Q 002564          543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD  619 (907)
Q Consensus       543 d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d  619 (907)
                      |++ ++.+..+.  ...++.+.|||+|++|++++.+   |.|.+||+.+.+.+....+. .++.++|||||++++++...
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence            997 66666664  5678899999999999998744   67999999999888887654 47899999999999999863


Q ss_pred             -----CCeEEEeecc
Q 002564          620 -----QNGVYLWVNR  629 (907)
Q Consensus       620 -----~~~i~lW~~~  629 (907)
                           .++++||+..
T Consensus       165 ~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  165 PRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cceeccccEEEEEec
Confidence                 2369999964

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=8.8e-12  Score=138.36  Aligned_cols=175  Identities=13%  Similarity=0.118  Sum_probs=121.0

Q ss_pred             CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCC
Q 002564          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (907)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~---dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~  237 (907)
                      ..|.+||. .+...+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+... .+.+.+.+|+|||+
T Consensus       182 ~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~-~g~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNF-PGMTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecC-CCcccCcEECCCCC
Confidence            37889997 45555667778889999999999999887753   468999999888653 33332 46788999999998


Q ss_pred             CEEEEEeCCCc--EEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCC
Q 002564          238 PLLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS  314 (907)
Q Consensus       238 ~~l~sg~~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (907)
                      .++++.+.++.  |.+||+.++.... +. .+........|+|||+.++..+. ++...+|.++...+..+.+.   .+.
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---~~~  333 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTR-LT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS---FGG  333 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEE-cc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee---cCC
Confidence            55566665554  7788998876544 43 45566778999999998887663 44444444443333222222   234


Q ss_pred             CCCeEEEEecCCCEEEEEeCCC---CEEEEEc
Q 002564          315 APPLCIRFYANGRHILSAGQDR---AFRLFSV  343 (907)
Q Consensus       315 ~~v~~i~~~~~g~~l~s~~~dg---~i~iwd~  343 (907)
                      ..+....|+|+|+.|+..+.++   .|.+|++
T Consensus       334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~  365 (435)
T PRK05137        334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP  365 (435)
T ss_pred             CcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence            4566788999999998776432   3555554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.3e-11  Score=136.25  Aligned_cols=239  Identities=13%  Similarity=0.113  Sum_probs=154.9

Q ss_pred             CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeC-C--CcEEEEECCCceeeeeeecccccCeEEEEEecC
Q 002564          203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-S--GVISIWNLEKRRLQSVIREAHDNAIISLHFFAN  279 (907)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~-d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~  279 (907)
                      ..|.++|.. +.....+..+ ...+.+.+|+|||+ .|+..+. +  ..|.+||+.+++.....  ...+.+.+..|+||
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~-~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~--~~~g~~~~~~~SPD  250 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSS-PEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVA--NFKGSNSAPAWSPD  250 (427)
T ss_pred             cEEEEECCC-CCCceEeccC-CCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEee--cCCCCccceEECCC
Confidence            457777764 4444444443 57899999999998 5555542 2  45999999988764332  24456678999999


Q ss_pred             CCEEE-EEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC-CCCEEEEEceecccceeechhhh
Q 002564          280 EPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHV  357 (907)
Q Consensus       280 ~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~  357 (907)
                      |+.|+ +.+.++...+|.++...+.   ...+..+........|+|||+.|+..+. +|...+|.+..            
T Consensus       251 G~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~------------  315 (427)
T PRK02889        251 GRTLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA------------  315 (427)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC------------
Confidence            98776 5677888888887765433   2233345555667789999888776553 34444544321            


Q ss_pred             hHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCC
Q 002564          358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN  437 (907)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  437 (907)
                                                                                                      
T Consensus       316 --------------------------------------------------------------------------------  315 (427)
T PRK02889        316 --------------------------------------------------------------------------------  315 (427)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCC---eEEEEECCCCceeeeeec
Q 002564          438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG---DIKVWDFKGRDLKSRWEV  514 (907)
Q Consensus       438 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~  514 (907)
                                      .++......         .+.......+|+|+|++++..+.++   .|.+||+.+++..... .
T Consensus       316 ----------------~~g~~~~lt---------~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~  369 (427)
T PRK02889        316 ----------------SGGAAQRVT---------FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-D  369 (427)
T ss_pred             ----------------CCCceEEEe---------cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-C
Confidence                            111100000         0011122457888888887766544   6999999888755433 2


Q ss_pred             CcceeEEEEeeCCCEEEEEeCCC---eEEEEEcccceeEEEeecCCCCeeeEEECCC
Q 002564          515 GCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (907)
Q Consensus       515 ~~~i~~~~~s~~~~~la~~~~dg---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd  568 (907)
                      ........|+|||+.|+.++.++   .+.+.+. +++..+.+..+.+.+...+|+|-
T Consensus       370 ~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        370 TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            33456789999999988887654   4666666 46666777777788888899874

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.48  E-value=5.8e-12  Score=122.12  Aligned_cols=335  Identities=15%  Similarity=0.198  Sum_probs=219.8

Q ss_pred             eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEc-cCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEE
Q 002564          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV-RYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (907)
Q Consensus       172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~-~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~  250 (907)
                      ..++.++||...|+....-|...-+++.+.|.+++||-- ..++.-..+.+....+++++.+.++.. .|++|-..|++.
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvt   93 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEE
Confidence            345677899999999888888888999999999999953 455555555555568999999999988 899999999999


Q ss_pred             EEECCC----ceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC
Q 002564          251 IWNLEK----RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (907)
Q Consensus       251 iwd~~~----~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g  326 (907)
                      -+.+..    ....+... .|...|..+-|+-....+++.+.|..+.---.+.+........     ....+++.+.-. 
T Consensus        94 efs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----~~~~t~~~~d~~-  166 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-----ETPASALQFDAL-  166 (404)
T ss_pred             EEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-----eccCCCCceeeE-
Confidence            887643    34444454 8999999999998888999999987764322222211111100     011111111111 


Q ss_pred             CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEE
Q 002564          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (907)
Q Consensus       327 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~  406 (907)
                       +.+.|...|.+....+....                                                           
T Consensus       167 -~~fvGd~~gqvt~lr~~~~~-----------------------------------------------------------  186 (404)
T KOG1409|consen  167 -YAFVGDHSGQITMLKLEQNG-----------------------------------------------------------  186 (404)
T ss_pred             -EEEecccccceEEEEEeecC-----------------------------------------------------------
Confidence             33344444444443332111                                                           


Q ss_pred             eeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC
Q 002564          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN  486 (907)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  486 (907)
                             -..+....+|...+++++|.+....+++|..|..+.+||+..........       .+|...|..+...+.-
T Consensus       187 -------~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el-------~gh~~kV~~l~~~~~t  252 (404)
T KOG1409|consen  187 -------CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL-------QGHNDKVQALSYAQHT  252 (404)
T ss_pred             -------CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee-------ccchhhhhhhhhhhhh
Confidence                   11122233567899999999999999999999999999998766655544       5899999999998888


Q ss_pred             CEEEEEecCCeEEEEECCCCceeee------------------------------eecC----cceeEEEEeeCCCEEEE
Q 002564          487 TLMISAGYHGDIKVWDFKGRDLKSR------------------------------WEVG----CSLVKIVYHRVNGLLAT  532 (907)
Q Consensus       487 ~~l~s~~~dg~i~iwd~~~~~~~~~------------------------------~~~~----~~i~~~~~s~~~~~la~  532 (907)
                      +.+++++.||.|-+|+++.......                              ..++    +...+...+.+.....+
T Consensus       253 ~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~  332 (404)
T KOG1409|consen  253 RQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPT  332 (404)
T ss_pred             eeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccc
Confidence            9999999999999999875421100                              0000    11111111111111222


Q ss_pred             EeCCCeEEEEEccc-------ceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCC
Q 002564          533 VADDLVIRLFDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL  588 (907)
Q Consensus       533 ~~~dg~I~v~d~~~-------~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~  588 (907)
                      -+..-.+|+-|.--       ...+..+..-...|+.+.+..+-.+|+|++.|..|+|||+..
T Consensus       333 mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  333 MGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             ccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            22233445444211       122444433335699999988888999999999999999863

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.48  E-value=3.3e-10  Score=117.37  Aligned_cols=277  Identities=9%  Similarity=0.001  Sum_probs=180.1

Q ss_pred             CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEec----------CCeEEEEEccCCceEEEEeecCC------
Q 002564          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS----------DGKIHVHNVRYDEELVTFTHSMR------  224 (907)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~----------dg~I~iwd~~~~~~~~~~~~~~~------  224 (907)
                      ++|.+.|..+++.+..+..-..+- .+ +|||++.|+++..          +..|.+||..+.+.+..+..+.+      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            889999999999999887533333 34 9999998887765          68999999999999998886422      


Q ss_pred             CCEEEEEEecCCCCEEEEEe-C-CCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCC
Q 002564          225 GAVTALAFSSDGQPLLASGA-S-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG  302 (907)
Q Consensus       225 ~~v~~l~fs~dg~~~l~sg~-~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~  302 (907)
                      .....++++|||+ +|++.. . +..|.+.|+.+++.+..+..  .++..-...+++. .+ +-+.||......++....
T Consensus       105 ~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       105 TYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGN  179 (352)
T ss_pred             CccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCc-cE-EEeecCceEEEEecCCCc
Confidence            1334889999999 555444 4 79999999999999998872  2222222222222 22 223355555544433221


Q ss_pred             CcceeEecc-CCC--CCC-eEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCcee
Q 002564          303 DPRLLRFRS-GHS--APP-LCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  377 (907)
Q Consensus       303 ~~~~~~~~~-~h~--~~v-~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  377 (907)
                       .. ..... .+.  .++ ..-.|.+ +|++++.... |.|.+.|+........                          
T Consensus       180 -~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~--------------------------  230 (352)
T TIGR02658       180 -PK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL--------------------------  230 (352)
T ss_pred             -eE-EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec--------------------------
Confidence             11 11110 111  000 0004566 7877777666 9999999654332111                          


Q ss_pred             EeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe----------CCCc
Q 002564          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT----------AGGW  447 (907)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~----------~dg~  447 (907)
                                               ..|...+......-     -.+....-++++++|+.+++..          ..+.
T Consensus       231 -------------------------~~~~~~~~~~~~~~-----wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~  280 (352)
T TIGR02658       231 -------------------------PAIEAFTEAEKADG-----WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF  280 (352)
T ss_pred             -------------------------ceeeeccccccccc-----cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence                                     01111100000000     0124444599999999998853          2247


Q ss_pred             EEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC-EEEEEe-cCCeEEEEECCCCceeeee
Q 002564          448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG-YHGDIKVWDFKGRDLKSRW  512 (907)
Q Consensus       448 i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~  512 (907)
                      |.++|..+++....+.         -...+.+++++||++ +|++.. .++.|.+.|..+++.+..+
T Consensus       281 V~ViD~~t~kvi~~i~---------vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       281 LFVVDAKTGKRLRKIE---------LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEECCCCeEEEEEe---------CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            9999999999998875         245789999999999 777666 6788999999999998887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2e-11  Score=135.52  Aligned_cols=232  Identities=15%  Similarity=0.131  Sum_probs=155.0

Q ss_pred             cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC---CCCEEEEEceecccceeechhhhhHHHhhccch
Q 002564          291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK  367 (907)
Q Consensus       291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  367 (907)
                      .|.+||.+..  .   .+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.++.... +               
T Consensus       183 ~l~~~d~dg~--~---~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l---------------  241 (435)
T PRK05137        183 RLAIMDQDGA--N---VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-V---------------  241 (435)
T ss_pred             EEEEECCCCC--C---cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-e---------------
Confidence            5666655432  2   2334467788999999999999887753   3568888875543211 0               


Q ss_pred             hhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEE-EeCCC
Q 002564          368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GTAGG  446 (907)
Q Consensus       368 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~dg  446 (907)
                                                                        .   .....+...+|+|||+.++. .+.+|
T Consensus       242 --------------------------------------------------~---~~~g~~~~~~~SPDG~~la~~~~~~g  268 (435)
T PRK05137        242 --------------------------------------------------G---NFPGMTFAPRFSPDGRKVVMSLSQGG  268 (435)
T ss_pred             --------------------------------------------------e---cCCCcccCcEECCCCCEEEEEEecCC
Confidence                                                              0   11245567899999998764 44455


Q ss_pred             --cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec-CC--eEEEEECCCCceeeeeecCcceeEE
Q 002564          447 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDFKGRDLKSRWEVGCSLVKI  521 (907)
Q Consensus       447 --~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~i~~~  521 (907)
                        .|++||+.++.... +        ..+........|+|||+.++..+. +|  .|.+||+.+++..........+...
T Consensus       269 ~~~Iy~~d~~~~~~~~-L--------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~  339 (435)
T PRK05137        269 NTDIYTMDLRSGTTTR-L--------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP  339 (435)
T ss_pred             CceEEEEECCCCceEE-c--------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence              47788988776543 2        245555677899999998887663 33  6888898877665544444556778


Q ss_pred             EEeeCCCEEEEEeCC---CeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCC------CcEEEEEcCCCcee
Q 002564          522 VYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD------GSLRIWDVILARQI  592 (907)
Q Consensus       522 ~~s~~~~~la~~~~d---g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D------g~I~vwd~~~~~~~  592 (907)
                      .|+|+|+.|+....+   ..|.+||+.++.. +.+. +...+....|+|||++|+..+.+      ..+.++|+..+.. 
T Consensus       340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-  416 (435)
T PRK05137        340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-  416 (435)
T ss_pred             EECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-
Confidence            899999999887653   3688889865543 3333 23357788999999998866543      2577888765544 


Q ss_pred             eEeeeCCceEEEEECC
Q 002564          593 DAIHVDVSITALSLSP  608 (907)
Q Consensus       593 ~~~~~~~~v~~l~~sp  608 (907)
                      ..+.....+...+|+|
T Consensus       417 ~~l~~~~~~~~p~Wsp  432 (435)
T PRK05137        417 REVPTPGDASDPAWSP  432 (435)
T ss_pred             EEccCCCCccCcccCC
Confidence            4444444467777876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.47  E-value=4.8e-12  Score=122.05  Aligned_cols=158  Identities=18%  Similarity=0.270  Sum_probs=116.7

Q ss_pred             eEEEEEcCCCCEEEEEeC----------CCcEEEEeCCC-CccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE--e
Q 002564          427 VKACTISACGNFAVLGTA----------GGWIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA--G  493 (907)
Q Consensus       427 v~~~~~s~~g~~l~~g~~----------dg~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~--~  493 (907)
                      -..+.|+++|++|++-..          -|...+|.+.. +.....+.       ....++|.+++|+|+|+.+++.  .
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-------l~~~~~I~~~~WsP~g~~favi~g~   80 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-------LKKEGPIHDVAWSPNGNEFAVIYGS   80 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-------ccCCCceEEEEECcCCCEEEEEEcc
Confidence            356789999988876544          13445555522 22222222       1345679999999999887554  3


Q ss_pred             cCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeC---CCeEEEEEcccceeEEEeecCCCCeeeEEECCCCc
Q 002564          494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK  570 (907)
Q Consensus       494 ~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~---dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~  570 (907)
                      .++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++.   .|.+.+||+++.+.+..+. |. .++.++|||||+
T Consensus        81 ~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr  156 (194)
T PF08662_consen   81 MPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGR  156 (194)
T ss_pred             CCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCC
Confidence            67899999996 56666554 467789999999999999874   4679999999999888776 33 478999999999


Q ss_pred             EEEEEeC------CCcEEEEEcCCCceeeEee
Q 002564          571 WLLSSGM------DGSLRIWDVILARQIDAIH  596 (907)
Q Consensus       571 ~l~s~s~------Dg~I~vwd~~~~~~~~~~~  596 (907)
                      +|++++.      |..++||+.. |+++....
T Consensus       157 ~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  157 YLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             EEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            9998864      7889999985 77766544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.46  E-value=7.2e-10  Score=114.83  Aligned_cols=270  Identities=13%  Similarity=0.112  Sum_probs=176.7

Q ss_pred             CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEe---------CCCcEEEEECCCceeeeeeeccc------
Q 002564          203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA---------SSGVISIWNLEKRRLQSVIREAH------  267 (907)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~---------~dg~I~iwd~~~~~~~~~~~~~h------  267 (907)
                      ++|.+.|..+++.+.++..+..  ...+ ++|||+.+.++.+         .+..|.+||..+.+.+..+..+-      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~--P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFL--PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCC--Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            8999999999999999987622  2335 9999995555666         68899999999999998887321      


Q ss_pred             ccCeEEEEEecCCCEEEEEc-C-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEE--------eCCCC
Q 002564          268 DNAIISLHFFANEPVLMSAS-A-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA--------GQDRA  337 (907)
Q Consensus       268 ~~~V~~l~~~~~~~~l~s~~-~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~--------~~dg~  337 (907)
                      ......++++|||++|+... . ++.|.+.|+...    +.+....-           |++..++..        +.||.
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~----kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~  168 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK----AFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGS  168 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCC----cEEEEEeC-----------CCCcEEEEecCCccEEEeecCc
Confidence            22344889999999888766 3 789999988765    34433322           333333333        23444


Q ss_pred             EEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceee
Q 002564          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (907)
Q Consensus       338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~  417 (907)
                      .....+........                                                ....+++...    ... 
T Consensus       169 ~~~v~~d~~g~~~~------------------------------------------------~~~~vf~~~~----~~v-  195 (352)
T TIGR02658       169 LAKVGYGTKGNPKI------------------------------------------------KPTEVFHPED----EYL-  195 (352)
T ss_pred             eEEEEecCCCceEE------------------------------------------------eeeeeecCCc----ccc-
Confidence            33332222111000                                                0000000000    000 


Q ss_pred             ecCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcc-----ceeeeccccccccCcCCcEEEEEEcCCCCEEEE
Q 002564          418 RPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGIS-----RGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (907)
Q Consensus       418 ~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  491 (907)
                         ..  .+    .+++ +|+++.+.+. |.|.+.|+.....     ...+.. ......-..+.+..++++++++.++.
T Consensus       196 ---~~--rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~~~wrP~g~q~ia~~~dg~~lyV  264 (352)
T TIGR02658       196 ---IN--HP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKADGWRPGGWQQVAYHRARDRIYL  264 (352)
T ss_pred             ---cc--CC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc-cccccccCCCcceeEEEcCCCCEEEE
Confidence               00  11    3355 8888888877 9999999644322     221110 00000123445556999999988887


Q ss_pred             Ee----------cCCeEEEEECCCCceeeeeecCcceeEEEEeeCCC-EEEEEe-CCCeEEEEEcccceeEEEee
Q 002564          492 AG----------YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVA-DDLVIRLFDVVALRMVRKFE  554 (907)
Q Consensus       492 ~~----------~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~-~dg~I~v~d~~~~~~~~~~~  554 (907)
                      ..          ..+.|.++|..+++.+..+.....+..++++||++ +|++.. .++.|.++|..+++.++++.
T Consensus       265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       265 LADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            43          22579999999999999999999999999999999 877776 57889999999999999873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=5.3e-11  Score=122.46  Aligned_cols=328  Identities=10%  Similarity=0.102  Sum_probs=205.3

Q ss_pred             EEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEE
Q 002564          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS  242 (907)
Q Consensus       163 i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~s  242 (907)
                      ...||.........-....-.-+-+.|||.|.||++--..| |.+|--.+-..++.|.+.   .|.-+.|||..+ +|++
T Consensus       192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp---~Vq~idfSP~Ek-YLVT  266 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP---GVQFIDFSPNEK-YLVT  266 (698)
T ss_pred             EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC---CceeeecCCccc-eEEE
Confidence            45677544322211111123346789999999999987765 889987777777777654   599999999998 7887


Q ss_pred             EeC-----------CCcEEEEECCCceeeeeeecc-cccC-eEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEe
Q 002564          243 GAS-----------SGVISIWNLEKRRLQSVIREA-HDNA-IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF  309 (907)
Q Consensus       243 g~~-----------dg~I~iwd~~~~~~~~~~~~~-h~~~-V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~  309 (907)
                      -+.           ...++|||+.+|.....+... .... -.-..||.|++++|.-.. ++|.|++...    ..++..
T Consensus       267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps----f~lld~  341 (698)
T KOG2314|consen  267 YSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS----FMLLDK  341 (698)
T ss_pred             ecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc----eeeecc
Confidence            652           257999999999988887721 1122 234689999999998876 5788885332    233333


Q ss_pred             ccCCCCCCeEEEEecCCCEEEEEeCC-----CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccc
Q 002564          310 RSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (907)
Q Consensus       310 ~~~h~~~v~~i~~~~~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  384 (907)
                      ..-....|....|+|.++.|+.-...     ..+.+..+.+.+.++.                                 
T Consensus       342 Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt---------------------------------  388 (698)
T KOG2314|consen  342 KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT---------------------------------  388 (698)
T ss_pred             cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee---------------------------------
Confidence            33445678888999987766643211     1122222222111111                                 


Q ss_pred             ccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe----------CCCcEEEEeCC
Q 002564          385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT----------AGGWIERFNLQ  454 (907)
Q Consensus       385 ~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~----------~dg~i~i~d~~  454 (907)
                                       ..+++                  -.=..+.|-.+|.+|++-.          .-.++.||.+.
T Consensus       389 -----------------~nlfn------------------VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir  433 (698)
T KOG2314|consen  389 -----------------KNLFN------------------VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR  433 (698)
T ss_pred             -----------------cccee------------------eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence                             00111                  1112234555666665431          12245666665


Q ss_pred             CCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec---CCeEEEEECCC-C---ceeeeeecCcceeEEEEeeCC
Q 002564          455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKVWDFKG-R---DLKSRWEVGCSLVKIVYHRVN  527 (907)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~-~---~~~~~~~~~~~i~~~~~s~~~  527 (907)
                      .....-...        .-...|...+|.|.|..+++-+.   ..++.+|.+.+ .   +++..+.. ...+.+.|+|.|
T Consensus       434 eKdIpve~v--------elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG  504 (698)
T KOG2314|consen  434 EKDIPVEVV--------ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKG  504 (698)
T ss_pred             ccCCCceee--------ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCC
Confidence            443322221        45677899999999987766543   35788898773 2   23333333 567889999999


Q ss_pred             CEEEEE---eCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeC
Q 002564          528 GLLATV---ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  577 (907)
Q Consensus       528 ~~la~~---~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~  577 (907)
                      ++++++   +..|.+..+|+.-..+...-.......+.+.|.|.|+|+++++.
T Consensus       505 ~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  505 RFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             cEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence            988876   45789999998743332222222234678899999999999875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.45  E-value=2.2e-08  Score=118.63  Aligned_cols=474  Identities=11%  Similarity=0.090  Sum_probs=273.1

Q ss_pred             cCCeEEEEEEeCCeEEEE----EcCcceEEEecCCCCcceEEEEEecCeEEEE--EcC-eEEEEeC--------------
Q 002564           24 LGTENFVTVSVGKAFHIY----NCAKLNLVLVGPQLPKKIRALASYRDYTFAA--YGN-HIAVVKR--------------   82 (907)
Q Consensus        24 ~~~~~~~~~~~~~~v~iw----d~~~~~~~~~~~~~~~~I~~la~~~~~~~~a--~g~-~I~vw~~--------------   82 (907)
                      .+.+.++++..+|-|.++    |........++ ..+..|.|++||||+..+|  +|. ++.+-.+              
T Consensus        85 ~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG-~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~  163 (928)
T PF04762_consen   85 ADSESLCIALASGDIILVREDPDPDEDEIEIVG-SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDD  163 (928)
T ss_pred             cCCCcEEEEECCceEEEEEccCCCCCceeEEEE-EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccc
Confidence            567788888889999999    76666655555 4588999999999966654  444 3333210              


Q ss_pred             -----------CeeEEEEcc------------------------cccceEEEEe--eCCEEEEEec---C---CcEEEEe
Q 002564           83 -----------AHQVATWSR------------------------HSAKVNLLLL--FGEHILSIDI---D---GNMFIWA  119 (907)
Q Consensus        83 -----------~~~~~~~~~------------------------h~~~V~~l~~--~g~~l~s~~~---d---g~v~vWd  119 (907)
                                 |++.-+|.|                        +...-..|+|  ||.++|+.+.   .   ..++||+
T Consensus       164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~  243 (928)
T PF04762_consen  164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS  243 (928)
T ss_pred             cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence                       111111221                        2223345666  8999988775   3   3599999


Q ss_pred             cCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEec---CCcEEEEecCCCeEEEEEc----CCCCCEEEEEEcCC
Q 002564          120 FKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ---EGSLQLWNISTKKKLYEFK----GWGSSISSCVSSPA  192 (907)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~----~h~~~I~~l~~sp~  192 (907)
                      .+ |.+    ..+-+.-.+.....+|.|.|  +.|++...   ...|.+|. ++|-.-..|.    .....|..+.|+++
T Consensus       244 Re-G~L----~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~d  315 (928)
T PF04762_consen  244 RE-GEL----QSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSD  315 (928)
T ss_pred             CC-ceE----EeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCC
Confidence            87 433    22222234445677899999  88888754   34566676 4555444443    34678999999999


Q ss_pred             CCEEEEEecCCeEEEEEccCCce--EEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccC
Q 002564          193 LDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA  270 (907)
Q Consensus       193 ~~~la~g~~dg~I~iwd~~~~~~--~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~  270 (907)
                      +.+||+...|. |.+|-..+..-  .+.+.......+..+.|+|.....|...+.+|.+..+++.-........      
T Consensus       316 s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~------  388 (928)
T PF04762_consen  316 SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS------  388 (928)
T ss_pred             CCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC------
Confidence            99999988765 99999887653  2333333234566699999887678888877888777652111111000      


Q ss_pred             eEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccc
Q 002564          271 IISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  349 (907)
Q Consensus       271 V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~  349 (907)
                            .|+.. .+++. ....+++-.+....-.|..-...-....+|.+++|++++..+++-..||.+.+|........
T Consensus       389 ------~~~D~g~vaVI-DG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~  461 (928)
T PF04762_consen  389 ------SPNDNGTVAVI-DGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMW  461 (928)
T ss_pred             ------CccCceEEEEE-eCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcc
Confidence                  11111 12222 22345555555443332222222244678999999999888999999999999986543221


Q ss_pred             eeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEE
Q 002564          350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA  429 (907)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~  429 (907)
                      .. ..+......                                            ...     .............+..
T Consensus       462 ~~-~~~~~~~~~--------------------------------------------~~~-----~~~~~~~~~~~~~~~~  491 (928)
T PF04762_consen  462 SV-KPPKLLSSI--------------------------------------------SLD-----SMDISDSELPLGSLRQ  491 (928)
T ss_pred             cc-cCcchhhhc--------------------------------------------ccc-----cccccccccccccEEE
Confidence            10 000000000                                            000     0000000111256777


Q ss_pred             EEEcCCCCEEEEEeCC---CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 002564          430 CTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR  506 (907)
Q Consensus       430 ~~~s~~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  506 (907)
                      ++|..+...+++...+   +.+.+++............     ...-.+.+..+...+....++.-..+|.+...+....
T Consensus       492 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~  566 (928)
T PF04762_consen  492 LAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVES-----STEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE  566 (928)
T ss_pred             EEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEE-----EeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence            8888877777666654   5777887744332211110     0123445555555555554666677888886665543


Q ss_pred             cee-eeeecCcceeEEEEeeCCC--EEEEE-eCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEE
Q 002564          507 DLK-SRWEVGCSLVKIVYHRVNG--LLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR  582 (907)
Q Consensus       507 ~~~-~~~~~~~~i~~~~~s~~~~--~la~~-~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~  582 (907)
                      ... ..+....+-..++...+..  .++.| +..|.+++    .++.+.      ..+++++++  +.+|+.......++
T Consensus       567 ~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la------~~~tSF~v~--~~~Ll~TT~~h~l~  634 (928)
T PF04762_consen  567 LSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA------SNCTSFAVT--DSFLLFTTTQHTLK  634 (928)
T ss_pred             ccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe------cCCceEEEE--cCEEEEEecCceEE
Confidence            222 2233333333333333333  23444 44454443    222222      567777775  45777777788899


Q ss_pred             EEEcC
Q 002564          583 IWDVI  587 (907)
Q Consensus       583 vwd~~  587 (907)
                      +.++.
T Consensus       635 fv~L~  639 (928)
T PF04762_consen  635 FVHLN  639 (928)
T ss_pred             EEECc
Confidence            99988

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=3.7e-10  Score=119.46  Aligned_cols=501  Identities=11%  Similarity=0.109  Sum_probs=296.2

Q ss_pred             EcCCeEEEEEEeCCeEEEEEcCcce----E-----------EEecCCCCcceEEEEEecCeEEEEEcCe---EEEEeCCe
Q 002564           23 RLGTENFVTVSVGKAFHIYNCAKLN----L-----------VLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAH   84 (907)
Q Consensus        23 ~~~~~~~~~~~~~~~v~iwd~~~~~----~-----------~~~~~~~~~~I~~la~~~~~~~~a~g~~---I~vw~~~~   84 (907)
                      ....+++++++.||.+.|..+.+..    .           -....+|...|.-+.|..+.+-+.+.++   |.||-.-+
T Consensus        23 Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlyk  102 (1189)
T KOG2041|consen   23 NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYK  102 (1189)
T ss_pred             cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeec
Confidence            3568899999999999999876421    1           1133689999999999988777766544   99996433


Q ss_pred             e--EE--EEcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEe
Q 002564           85 Q--VA--TWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS  158 (907)
Q Consensus        85 ~--~~--~~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s  158 (907)
                      .  ..  .-....+.|.++.|  +|..++.+-.||.|.|=.++........++     ......+.+++|.  ..++.+-
T Consensus       103 gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk-----g~~l~hv~ws~D~--~~~Lf~~  175 (1189)
T KOG2041|consen  103 GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK-----GQLLAHVLWSEDL--EQALFKK  175 (1189)
T ss_pred             ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc-----hheccceeecccH--HHHHhhh
Confidence            2  11  12334667888887  799999999999998888877665322221     2223467889988  6788888


Q ss_pred             cCCcEEEEecCCC-------eEEE----EEcCCCCCEEEEEEc--------CCCCEEEEEecCCeEEEEEccCCceEEEE
Q 002564          159 QEGSLQLWNISTK-------KKLY----EFKGWGSSISSCVSS--------PALDVVAVGCSDGKIHVHNVRYDEELVTF  219 (907)
Q Consensus       159 ~dg~i~iwd~~~~-------~~~~----~~~~h~~~I~~l~~s--------p~~~~la~g~~dg~I~iwd~~~~~~~~~~  219 (907)
                      .+|.+.++|....       .+..    .+......|-.+.|.        |+...+|++..+|.+.|-.-.++.....+
T Consensus       176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~  255 (1189)
T KOG2041|consen  176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV  255 (1189)
T ss_pred             cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE
Confidence            8999999986432       1111    122223345555553        57789999999999999877766655555


Q ss_pred             eecCCCCEEEEEEecCCCCEEEEEeCC---------CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCC
Q 002564          220 THSMRGAVTALAFSSDGQPLLASGASS---------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN  290 (907)
Q Consensus       220 ~~~~~~~v~~l~fs~dg~~~l~sg~~d---------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~  290 (907)
                      ..+  -.+..+.|+++|. +||+++.+         +.|.+|. .-|+.+.+++ .....|++++|-..|-.++.+- |+
T Consensus       256 dtg--m~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlk-vpg~~It~lsWEg~gLriA~Av-ds  329 (1189)
T KOG2041|consen  256 DTG--MKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLK-VPGSCITGLSWEGTGLRIAIAV-DS  329 (1189)
T ss_pred             ecc--cEeecceecCCCc-EEEEccCcccccCccccceEEEec-cchhheEEEe-cCCceeeeeEEcCCceEEEEEe-cc
Confidence            543  6799999999999 88888754         2455555 4567777777 6778999999987776666554 66


Q ss_pred             cEEEEEccCCCC----CcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccc
Q 002564          291 SIKMWIFDTTDG----DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM  366 (907)
Q Consensus       291 ~i~vw~~~~~~~----~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  366 (907)
                      .|.+=+++..-.    ....+....+...+-.+                  |.+||..+++.......+...-..     
T Consensus       330 fiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~------------------i~Fwdtk~nek~vK~V~~~~~~a~-----  386 (1189)
T KOG2041|consen  330 FIYFANIRPEYKWGYIEETVVYVYQKEELPQYG------------------IMFWDTKTNEKTVKTVTHFENMAF-----  386 (1189)
T ss_pred             eEEEEeecccceEEEeeeEEEEEEccCCCcceE------------------EEEEecccChhhhhhhcceeehhe-----
Confidence            776655443210    00111111222222223                  333333332211110000000000     


Q ss_pred             hhhhcccCceeEeeecccccccccceEEEeeCCceE----------EEEEeeec-eecceeeecCCCCCCceEEEEEcCC
Q 002564          367 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA----------YVWRLQNF-VLGEHILRPCPENPTAVKACTISAC  435 (907)
Q Consensus       367 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v----------~~w~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~  435 (907)
                                     +    .+ -.++....+++.+          ++|-+.-. .+|    .+.+..-..|.-.-..-+
T Consensus       387 ---------------~----~e-hCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIG----T~lD~kytdirP~Fv~vn  442 (1189)
T KOG2041|consen  387 ---------------Y----RE-HCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIG----TSLDYKYTDIRPKFVCVN  442 (1189)
T ss_pred             ---------------e----cc-cEEEEeccccCCCcchhhhhcccceEEEeeecccC----CcCCCCcceeeeeEEEec
Confidence                           0    00 0000000000000          00000000 000    000000111222222223


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCccceeeec------------------------cccccccCcCCcEEEEEEcCCCCEEEE
Q 002564          436 GNFAVLGTAGGWIERFNLQSGISRGSYLD------------------------MSERSNYAHNGEVVGVACDSTNTLMIS  491 (907)
Q Consensus       436 g~~l~~g~~dg~i~i~d~~~~~~~~~~~~------------------------~~~~~~~~h~~~v~~l~~s~~~~~l~s  491 (907)
                      |.++++++.+ .+.+|.....+....+..                        .......+..++|..++.+  .++++.
T Consensus       443 ~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~v  519 (1189)
T KOG2041|consen  443 GICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMV  519 (1189)
T ss_pred             ceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEE
Confidence            4455555443 345554322211111000                        0001224566788888876  468899


Q ss_pred             EecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcc---cceeEE-EeecCCCCeeeEEECC
Q 002564          492 AGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV---ALRMVR-KFEGHTDRITDFCFSE  567 (907)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~---~~~~~~-~~~~h~~~I~~l~fsp  567 (907)
                      +-..|.|.-+.+.+.-+...+.....+.++...-+...+|+..--|.+.+.|+.   ++..+. .+......|.++.|..
T Consensus       520 areSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~  599 (1189)
T KOG2041|consen  520 ARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQ  599 (1189)
T ss_pred             EeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhcc
Confidence            999999999999999999999889999999999989999988888889888876   333333 3444556799999998


Q ss_pred             CCcEEEEEeCCCcEEEEEc
Q 002564          568 DGKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       568 dg~~l~s~s~Dg~I~vwd~  586 (907)
                      |+..|..--....+.|++-
T Consensus       600 dNp~llAlmeKtrmyifrg  618 (1189)
T KOG2041|consen  600 DNPNLLALMEKTRMYIFRG  618 (1189)
T ss_pred             CCchHHhhhhhceEEEecC
Confidence            8876665444445666653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.43  E-value=1.7e-09  Score=106.96  Aligned_cols=302  Identities=13%  Similarity=0.149  Sum_probs=201.1

Q ss_pred             CCcEEEEECCCc--eeeeeeecccccCeEEEEEecCCCEEEEEcC---CCcEEEEEccCCCCCcceeEeccCCCCCCeEE
Q 002564          246 SGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (907)
Q Consensus       246 dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (907)
                      +.-|.+|++.+.  +........+.+.++-|+|+|++++|.++..   +|.|..|.++..++....+........+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            577999998733  3222222357788999999999999888754   58899999988766656665555555667999


Q ss_pred             EEecCCCEEEEEeC-CCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCC
Q 002564          321 RFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (907)
Q Consensus       321 ~~~~~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  399 (907)
                      +++++|++++++.. -|.|.++-+..........+                        .              ..|.+ 
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~------------------------~--------------~~h~g-  135 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ------------------------V--------------VKHTG-  135 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCcccccee------------------------e--------------eecCC-
Confidence            99999999998864 47888888765433222111                        0              00000 


Q ss_pred             ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCccceeeeccccccccCcCCcEE
Q 002564          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (907)
Q Consensus       400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (907)
                                    ..  ...++....+....++|+++++++.+-. -.|.+|++..|.....-...     -.-....+
T Consensus       136 --------------~~--p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-----v~~G~GPR  194 (346)
T COG2706         136 --------------SG--PHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-----VKPGAGPR  194 (346)
T ss_pred             --------------CC--CCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-----cCCCCCcc
Confidence                          00  0011122447888999999999887644 58999999977665433210     13345678


Q ss_pred             EEEEcCCCCEEEEEe-cCCeEEEEECCCC-ceeeee----------ecCcceeEEEEeeCCCEEEEEeC-CCeEEEEEcc
Q 002564          479 GVACDSTNTLMISAG-YHGDIKVWDFKGR-DLKSRW----------EVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV  545 (907)
Q Consensus       479 ~l~~s~~~~~l~s~~-~dg~i~iwd~~~~-~~~~~~----------~~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~  545 (907)
                      .|+|+|++++..... .+++|-+|.++.. .....+          ........+.+++||++|.++.. ...|.+|.+.
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            999999999887666 7899999998873 112111          22367788999999999998765 2378888765


Q ss_pred             c--cee--EEEeecCCCCeeeEEECCCCcEEEEEeCC-CcEEEEEcC--CCceeeEeee-C-CceEEEEEC
Q 002564          546 A--LRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVI--LARQIDAIHV-D-VSITALSLS  607 (907)
Q Consensus       546 ~--~~~--~~~~~~h~~~I~~l~fspdg~~l~s~s~D-g~I~vwd~~--~~~~~~~~~~-~-~~v~~l~~s  607 (907)
                      .  +++  +.....+...-.+..|+|+|++|+++..+ .+|.+|.+.  +|++-..... . ....|+.|.
T Consensus       275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            3  332  23333344557889999999999988865 468888664  5665443331 1 125566553

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.39  E-value=7e-11  Score=123.46  Aligned_cols=194  Identities=17%  Similarity=0.257  Sum_probs=151.8

Q ss_pred             CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEE-------------------EEcCCCCCCEEEEEecCCcE
Q 002564          103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-------------------IMHPDTYLNKVIVGSQEGSL  163 (907)
Q Consensus       103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~p~~~~~~l~~~s~dg~i  163 (907)
                      +.++|....||.+++||...++............+..+...                   -.+.++  ..++.|...|.|
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t--~~lvlgt~~g~v   82 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT--SMLVLGTPQGSV   82 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCc--eEEEeecCCccE
Confidence            56778888888888888887766321111111111111110                   012233  568889999999


Q ss_pred             EEEecCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564          164 QLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (907)
Q Consensus       164 ~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~  241 (907)
                      .+|++..|+..+.+.  .|.+.|+++.++.+-..|.+++.|+.+..|+...++.++.+... +..+.+++.+|||. +++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~is~D~~-~l~  160 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLCISPDGK-ILL  160 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEEEcCCCC-EEE
Confidence            999999999998886  68999999999999999999999999999999999999988877 67899999999998 888


Q ss_pred             EEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC-----CCEEEE-EcCCCcEEEEEccCCCCC
Q 002564          242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-----EPVLMS-ASADNSIKMWIFDTTDGD  303 (907)
Q Consensus       242 sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~s-~~~d~~i~vw~~~~~~~~  303 (907)
                      +++  +.|++||+++++.+..+. +|.++|.++.|..+     |.++++ ...+.-+.+|-.+.....
T Consensus       161 ~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kk  225 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKK  225 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEccccc
Confidence            876  789999999999999999 99999999999887     555554 455777889987765433

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.34  E-value=7.8e-11  Score=114.27  Aligned_cols=292  Identities=12%  Similarity=0.171  Sum_probs=185.7

Q ss_pred             cccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCC-CCcceeEeccCCC------------CCCeEEEEecC--CCEEEE
Q 002564          267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-GDPRLLRFRSGHS------------APPLCIRFYAN--GRHILS  331 (907)
Q Consensus       267 h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~-~~~~~~~~~~~h~------------~~v~~i~~~~~--g~~l~s  331 (907)
                      ...-|.++.|...|.+|++|..+|.|.++.-+... +.......+..|.            ..|..++|.++  ...++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            44578899999999999999999999998543322 2333444444443            46889999984  457788


Q ss_pred             EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (907)
Q Consensus       332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~  411 (907)
                      .+.|.+|++|.+.......+-..  ...  ..-......+++|.+...+.          .+.+                
T Consensus       104 stNdktiKlWKi~er~~k~~~~~--~~~--~~~~~~~~~lr~p~~~~~~~----------~vea----------------  153 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYN--LPE--EGPPGTITSLRLPVEGRHDL----------EVEA----------------  153 (433)
T ss_pred             ecCCcceeeeeeecccccccccc--ccc--cCCCCccceeeceeeccccc----------eeee----------------
Confidence            89999999999875443321000  000  00000000111111111100          0000                


Q ss_pred             ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEE
Q 002564          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMI  490 (907)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~  490 (907)
                        .........|...+.++.++.|+..++++ .|=.|-+|++.-......+....+..+..-..-|++..|+|.. ..++
T Consensus       154 --~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~  230 (433)
T KOG1354|consen  154 --SPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFV  230 (433)
T ss_pred             --eeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEE
Confidence              01111123566789999999999988876 5678999998754444333322222222223457888899954 6777


Q ss_pred             EEecCCeEEEEECCCCcee----eeee-------------cCcceeEEEEeeCCCEEEEEeCCCeEEEEEc-ccceeEEE
Q 002564          491 SAGYHGDIKVWDFKGRDLK----SRWE-------------VGCSLVKIVYHRVNGLLATVADDLVIRLFDV-VALRMVRK  552 (907)
Q Consensus       491 s~~~dg~i~iwd~~~~~~~----~~~~-------------~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~-~~~~~~~~  552 (907)
                      -++..|+|++-|++...+.    ..+.             .-..|..+.|+++|+++++-.. -+|++||+ ...+++.+
T Consensus       231 YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t  309 (433)
T KOG1354|consen  231 YSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVET  309 (433)
T ss_pred             EecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceE
Confidence            7788899999999843221    1111             0167889999999999987643 68999999 45677777


Q ss_pred             eecCC------------CCe---eeEEECCCCcEEEEEeCCCcEEEEEcCCCcee
Q 002564          553 FEGHT------------DRI---TDFCFSEDGKWLLSSGMDGSLRIWDVILARQI  592 (907)
Q Consensus       553 ~~~h~------------~~I---~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~  592 (907)
                      ++-|.            +.|   ..++||.++.+++||+.....+++++..|...
T Consensus       310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence            76653            223   34789999999999999999999997766543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=2.1e-09  Score=110.97  Aligned_cols=321  Identities=11%  Similarity=0.132  Sum_probs=201.8

Q ss_pred             cEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEec-----------CCeEEEEE
Q 002564          141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS-----------DGKIHVHN  209 (907)
Q Consensus       141 ~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~-----------dg~I~iwd  209 (907)
                      .-+.|+|.|  .+|++--..| |.+|--++...++.|..  ..|.-+.|||..+||++-+.           ...++|||
T Consensus       214 tyv~wSP~G--TYL~t~Hk~G-I~lWGG~~f~r~~RF~H--p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  214 TYVRWSPKG--TYLVTFHKQG-IALWGGESFDRIQRFYH--PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeEEecCCc--eEEEEEeccc-eeeecCccHHHHHhccC--CCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            345699999  8999998877 99998777677777652  46889999999999998642           25799999


Q ss_pred             ccCCceEEEEeecCCC--CEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc
Q 002564          210 VRYDEELVTFTHSMRG--AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS  287 (907)
Q Consensus       210 ~~~~~~~~~~~~~~~~--~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~  287 (907)
                      +.+|.....|......  .-.-..||.|++ ++|--.. ..|.||+..+..++..-. -.-..|....|+|.+++||.=.
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~lld~Ks-lki~gIr~FswsP~~~llAYwt  365 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFMLLDKKS-LKISGIRDFSWSPTSNLLAYWT  365 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCceeeecccc-cCCccccCcccCCCcceEEEEc
Confidence            9999999888763111  223467999999 6765554 579999987755443333 3456789999999988777543


Q ss_pred             CC-----CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHh
Q 002564          288 AD-----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (907)
Q Consensus       288 ~d-----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  362 (907)
                      ..     ..+.+-.+...    +.+++.+-|.-.=..+.|-.+|.+|+.--.-       ....+....           
T Consensus       366 pe~~~~parvtL~evPs~----~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR-------~tK~~~~g~-----------  423 (698)
T KOG2314|consen  366 PETNNIPARVTLMEVPSK----REIRTKNLFNVSDCKLHWQKSGDYLCVKVDR-------HTKSKVKGQ-----------  423 (698)
T ss_pred             ccccCCcceEEEEecCcc----ceeeeccceeeeccEEEeccCCcEEEEEEEe-------eccccccce-----------
Confidence            21     12333333222    3445444444444455666677777642110       000000000           


Q ss_pred             hccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEE
Q 002564          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  442 (907)
Q Consensus       363 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  442 (907)
                                                          -..+.++.+....+....+.    -...+...+|.|.|+.+++-
T Consensus       424 ------------------------------------f~n~eIfrireKdIpve~ve----lke~vi~FaWEP~gdkF~vi  463 (698)
T KOG2314|consen  424 ------------------------------------FSNLEIFRIREKDIPVEVVE----LKESVIAFAWEPHGDKFAVI  463 (698)
T ss_pred             ------------------------------------EeeEEEEEeeccCCCceeee----cchheeeeeeccCCCeEEEE
Confidence                                                00111222222222111111    12678899999999877665


Q ss_pred             eC---CCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe---cCCeEEEEECCCCceeee-eecC
Q 002564          443 TA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKGRDLKSR-WEVG  515 (907)
Q Consensus       443 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~-~~~~  515 (907)
                      +.   ..++.+|.+.+......+..      .-.....+.+.|+|.|++++.++   ..|.+.++|..-..+..+ ...+
T Consensus       464 ~g~~~k~tvsfY~~e~~~~~~~lVk------~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh  537 (698)
T KOG2314|consen  464 SGNTVKNTVSFYAVETNIKKPSLVK------ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH  537 (698)
T ss_pred             EccccccceeEEEeecCCCchhhhh------hhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc
Confidence            43   35788888774222211110      12235678899999999998775   568899999885332222 2233


Q ss_pred             cceeEEEEeeCCCEEEEEeCCC
Q 002564          516 CSLVKIVYHRVNGLLATVADDL  537 (907)
Q Consensus       516 ~~i~~~~~s~~~~~la~~~~dg  537 (907)
                      ...+.+.|.|.|+++++++.-.
T Consensus       538 ~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  538 FAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             cccccceECCCCCEEEEeeehh
Confidence            6678899999999999987643

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.33  E-value=1.3e-09  Score=119.28  Aligned_cols=300  Identities=12%  Similarity=0.090  Sum_probs=187.1

Q ss_pred             CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEE
Q 002564          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (907)
                      +++++++.+|.|..+|..+|+.+..+...........  .++..+++++.+|.+..+|..+|+.+.+....  +.+.+..
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~p  141 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVLSPP  141 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceeecCC
Confidence            5799999999999999999999988765433222222  24678888999999999999999988776643  3333222


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe-----EEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcce
Q 002564          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI-----ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL  306 (907)
Q Consensus       232 fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~  306 (907)
                      ...++  .++.++.+|.|..||.++|+.+.... .....+     .+.... + ..++.+..++.+..+|...+...++.
T Consensus       142 ~v~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       142 LVANG--LVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             EEECC--EEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee
Confidence            22233  46667789999999999998877765 221111     111121 2 36777778888888876554322111


Q ss_pred             eEe-ccCCCC--CCeEEEEec--CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeee
Q 002564          307 LRF-RSGHSA--PPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (907)
Q Consensus       307 ~~~-~~~h~~--~v~~i~~~~--~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  381 (907)
                      ... ..+...  ....+.-.|  .+..++.++.+|.+..||..+++..                                
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~--------------------------------  264 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL--------------------------------  264 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE--------------------------------
Confidence            000 000000  000010111  3457888888999999987655432                                


Q ss_pred             cccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccee
Q 002564          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (907)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~  461 (907)
                                             |....               .....  ....+..+++++.+|.++.+|..+|+.+..
T Consensus       265 -----------------------W~~~~---------------~~~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~  304 (377)
T TIGR03300       265 -----------------------WKRDA---------------SSYQG--PAVDDNRLYVTDADGVVVALDRRSGSELWK  304 (377)
T ss_pred             -----------------------Eeecc---------------CCccC--ceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence                                   22210               00011  112467888888999999999999987765


Q ss_pred             eeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCc-ceeEEEEeeCCCEEEEEeCCCeEE
Q 002564          462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC-SLVKIVYHRVNGLLATVADDLVIR  540 (907)
Q Consensus       462 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~~~~s~~~~~la~~~~dg~I~  540 (907)
                      ...       ...........  .+..+++++.+|.|.++|..+++.+..++.+. .+..--...+ +.|++++.||.|+
T Consensus       305 ~~~-------~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~  374 (377)
T TIGR03300       305 NDE-------LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLY  374 (377)
T ss_pred             ccc-------ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEE
Confidence            421       11111222222  35688899999999999999999998887654 3332222233 4588888999887


Q ss_pred             EE
Q 002564          541 LF  542 (907)
Q Consensus       541 v~  542 (907)
                      .|
T Consensus       375 ~~  376 (377)
T TIGR03300       375 AF  376 (377)
T ss_pred             Ee
Confidence            65

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=4.1e-10  Score=124.63  Aligned_cols=172  Identities=16%  Similarity=0.168  Sum_probs=112.8

Q ss_pred             cEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (907)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~  238 (907)
                      .|.++|..... .+.+..+...+.+..|||||+.|+..+.+   ..|.+||+.+++... +... .+.....+|+|||+.
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~-~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF-PGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC-CCCcCCeeECCCCCE
Confidence            57777864443 34555567789999999999988876543   368889998876533 2221 344567899999995


Q ss_pred             EEEEEeCCCc--EEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCCCC
Q 002564          239 LLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (907)
Q Consensus       239 ~l~sg~~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (907)
                      ++++.+.+|.  |.++|+.+++.... . .+........|+||++.++..+ .++...+|.++..++..+.+. ..++  
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~l-t-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~--  350 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTRI-T-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGE--  350 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEEC-c-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCC--
Confidence            5556666665  88889888765443 3 3555667889999999776655 356666666665444333332 2222  


Q ss_pred             CCeEEEEecCCCEEEEEeC-CCCEEEE
Q 002564          316 PPLCIRFYANGRHILSAGQ-DRAFRLF  341 (907)
Q Consensus       316 ~v~~i~~~~~g~~l~s~~~-dg~i~iw  341 (907)
                      .....+|+|||++++..+. ++...+|
T Consensus       351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~  377 (448)
T PRK04792        351 QNLGGSITPDGRSMIMVNRTNGKFNIA  377 (448)
T ss_pred             CCcCeeECCCCCEEEEEEecCCceEEE
Confidence            2345689999999887654 3433443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.31  E-value=3.5e-10  Score=125.99  Aligned_cols=177  Identities=16%  Similarity=0.133  Sum_probs=120.2

Q ss_pred             CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCC
Q 002564          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (907)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~  237 (907)
                      ..|.++|.. +...+.+..+...+...+|+|+|++|+.+...   ..|.+||+.+++...... . .+.+.+++|+|||+
T Consensus       170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~-~~~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-F-PGMNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-C-CCCccceEECCCCC
Confidence            368888875 44445555667789999999999999987654   479999999886543322 2 45677899999998


Q ss_pred             CEEEEEeCCC--cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCC
Q 002564          238 PLLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS  314 (907)
Q Consensus       238 ~~l~sg~~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~  314 (907)
                      .++++.+.++  .|.+||+.++......  .+........|+|+++.|+.++. ++...+|.++..++...   .+..+.
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~---~l~~~~  321 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR---RLTFRG  321 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECC--CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE---EeecCC
Confidence            5555555444  5899999887654333  34455567899999998876554 44444544443333222   222344


Q ss_pred             CCCeEEEEecCCCEEEEEeCCC---CEEEEEcee
Q 002564          315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQ  345 (907)
Q Consensus       315 ~~v~~i~~~~~g~~l~s~~~dg---~i~iwd~~~  345 (907)
                      .......|+|+|++++.++.++   .|.+||+.+
T Consensus       322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             CCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence            5667889999999999887765   566666543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.30  E-value=4.2e-10  Score=125.37  Aligned_cols=207  Identities=14%  Similarity=0.047  Sum_probs=144.3

Q ss_pred             CceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccceeeeccccccccCcCC
Q 002564          399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNG  475 (907)
Q Consensus       399 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~  475 (907)
                      ...+.++|......  ..+.   .+...+...+|+|+|++++.....   ..|++|++.++......         .+.+
T Consensus       169 ~~~l~~~d~~g~~~--~~l~---~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---------~~~~  234 (417)
T TIGR02800       169 RYELQVADYDGANP--QTIT---RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA---------SFPG  234 (417)
T ss_pred             cceEEEEcCCCCCC--EEee---cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---------cCCC
Confidence            34566666543221  1111   223467888999999999887654   47999999887654322         3455


Q ss_pred             cEEEEEEcCCCCEEEE-EecCC--eEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC-C--eEEEEEccccee
Q 002564          476 EVVGVACDSTNTLMIS-AGYHG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRM  549 (907)
Q Consensus       476 ~v~~l~~s~~~~~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-g--~I~v~d~~~~~~  549 (907)
                      .+.+++|+|+++.|+. .+.++  .|.+||+.+++...............|+|+++.|+..+.. +  .|+++|+.+++.
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~  314 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV  314 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            6677899999987764 44444  5889999887665544444445577899999988776653 2  688888887664


Q ss_pred             EEEeecCCCCeeeEEECCCCcEEEEEeCCC---cEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCC
Q 002564          550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDG---SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN  621 (907)
Q Consensus       550 ~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg---~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~  621 (907)
                      . .+..+...+....|+|||++|+.++.++   .|.+||+.++... .+..........|+|||++|+.+..++.
T Consensus       315 ~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~  387 (417)
T TIGR02800       315 R-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTRGG  387 (417)
T ss_pred             E-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeCCC
Confidence            3 4444556678889999999999888776   7999999876543 3332333556789999999998888763

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.29  E-value=4.1e-09  Score=115.32  Aligned_cols=298  Identities=15%  Similarity=0.185  Sum_probs=187.5

Q ss_pred             EeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcC
Q 002564          100 LLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG  179 (907)
Q Consensus       100 ~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  179 (907)
                      ...++.++.++.+|.|..+|..+++.    +-+...........+.  ++  +.+++++.+|.+..+|..+|+.+.....
T Consensus        62 ~v~~~~v~v~~~~g~v~a~d~~tG~~----~W~~~~~~~~~~~p~v--~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~  133 (377)
T TIGR03300        62 AVAGGKVYAADADGTVVALDAETGKR----LWRVDLDERLSGGVGA--DG--GLVFVGTEKGEVIALDAEDGKELWRAKL  133 (377)
T ss_pred             EEECCEEEEECCCCeEEEEEccCCcE----eeeecCCCCcccceEE--cC--CEEEEEcCCCEEEEEECCCCcEeeeecc
Confidence            45688999999999999999999987    4444444333222222  23  6788999999999999999999987764


Q ss_pred             CCCCEEE-EEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCE-----EEEEEecCCCCEEEEEeCCCcEEEEE
Q 002564          180 WGSSISS-CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV-----TALAFSSDGQPLLASGASSGVISIWN  253 (907)
Q Consensus       180 h~~~I~~-l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v-----~~l~fs~dg~~~l~sg~~dg~I~iwd  253 (907)
                      .. .+.+ ...  .++.+++++.+|.+..||.++|+.+.++.... ..+     .+.... ++  .++.+..+|.+..+|
T Consensus       134 ~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~-~~--~v~~~~~~g~v~ald  206 (377)
T TIGR03300       134 SS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVT-PALTLRGSASPVIA-DG--GVLVGFAGGKLVALD  206 (377)
T ss_pred             Cc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCC-CceeecCCCCCEEE-CC--EEEEECCCCEEEEEE
Confidence            32 2221 111  34577788889999999999999887776431 111     111221 33  567788889999999


Q ss_pred             CCCceeeeeeeccccc---C------e-EEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564          254 LEKRRLQSVIREAHDN---A------I-ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (907)
Q Consensus       254 ~~~~~~~~~~~~~h~~---~------V-~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (907)
                      ..+|+.+.........   .      + .+..+  .+..++.++.+|.+..||..++.    .+.... .. ......  
T Consensus       207 ~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~----~~W~~~-~~-~~~~p~--  276 (377)
T TIGR03300       207 LQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGR----VLWKRD-AS-SYQGPA--  276 (377)
T ss_pred             ccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCc----EEEeec-cC-CccCce--
Confidence            9999876554311110   0      0 01111  24477778889999999876543    221111 11 111112  


Q ss_pred             cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (907)
Q Consensus       324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  403 (907)
                      ..+..++.++.+|.+..+|..+++...+                                                    
T Consensus       277 ~~~~~vyv~~~~G~l~~~d~~tG~~~W~----------------------------------------------------  304 (377)
T TIGR03300       277 VDDNRLYVTDADGVVVALDRRSGSELWK----------------------------------------------------  304 (377)
T ss_pred             EeCCEEEEECCCCeEEEEECCCCcEEEc----------------------------------------------------
Confidence            2456788888999999999866543221                                                    


Q ss_pred             EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcE-EEEEE
Q 002564          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV-VGVAC  482 (907)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~  482 (907)
                         .....          .  ....+..+  .+..+++++.+|.++++|..+|+.+..+.        .+...+ ...++
T Consensus       305 ---~~~~~----------~--~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~--------~~~~~~~~sp~~  359 (377)
T TIGR03300       305 ---NDELK----------Y--RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK--------TDGSGIASPPVV  359 (377)
T ss_pred             ---ccccc----------C--CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE--------cCCCccccCCEE
Confidence               10000          0  01111111  36789999999999999999999988775        333222 22222


Q ss_pred             cCCCCEEEEEecCCeEEEE
Q 002564          483 DSTNTLMISAGYHGDIKVW  501 (907)
Q Consensus       483 s~~~~~l~s~~~dg~i~iw  501 (907)
                      . + ..|+.++.||.|..+
T Consensus       360 ~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       360 V-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             E-C-CEEEEEeCCceEEEe
Confidence            2 3 358888899988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=1.5e-09  Score=119.00  Aligned_cols=133  Identities=9%  Similarity=-0.006  Sum_probs=90.4

Q ss_pred             EEEEEEcCCCCEEEEEe-cCCeEEEE--ECCC-Cceeeeee-cCcceeEEEEeeCCCEEEEEeCC---CeEEEEEcccce
Q 002564          477 VVGVACDSTNTLMISAG-YHGDIKVW--DFKG-RDLKSRWE-VGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALR  548 (907)
Q Consensus       477 v~~l~~s~~~~~l~s~~-~dg~i~iw--d~~~-~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~d---g~I~v~d~~~~~  548 (907)
                      ....+|+|||+.|+..+ .+|...+|  ++.. +.....+. ....+....|+|||+.|+....+   ..|.+||+.+++
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            34568899998777655 45655555  4432 22223232 23466788999999998877553   479999999887


Q ss_pred             eEEEeecCCCCeeeEEECCCCcEEEEEeC---CCcEEEEEcCCCceeeEeeeCCceEEEEECCCC
Q 002564          549 MVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSPNM  610 (907)
Q Consensus       549 ~~~~~~~h~~~I~~l~fspdg~~l~s~s~---Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg  610 (907)
                      ... +......+....|+|||++|+..+.   ...|.+||+.+++..........+...+|+|-.
T Consensus       363 ~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        363 DYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             eEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            644 3333446778999999998875443   357889999888766655555557788888754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.1e-09  Score=121.28  Aligned_cols=169  Identities=13%  Similarity=0.008  Sum_probs=111.2

Q ss_pred             EEEEEcCCCCEEEE-EeCCCc--EEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec-CC--eEEEE
Q 002564          428 KACTISACGNFAVL-GTAGGW--IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVW  501 (907)
Q Consensus       428 ~~~~~s~~g~~l~~-g~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg--~i~iw  501 (907)
                      ...+|+|||+.++. .+.+|.  |+++|+.++......         .+.......+|+||++.++..+. ++  .|.++
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt---------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~  335 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT---------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRV  335 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            46789999998875 455664  778888877654322         34455677899999998876553 33  46667


Q ss_pred             ECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC-C--eEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCC
Q 002564          502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD  578 (907)
Q Consensus       502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-g--~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D  578 (907)
                      |+.+++..............+|+|||++++..+.+ +  .|.++|+.+++.. .+... .......|+|||++|+..+.+
T Consensus       336 dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        336 NLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             ECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEec
Confidence            88777654432222333457899999998887653 3  5666788877653 33322 122355899999998866543


Q ss_pred             -C--cEEEEEcCCCceeeEeeeC-CceEEEEECC
Q 002564          579 -G--SLRIWDVILARQIDAIHVD-VSITALSLSP  608 (907)
Q Consensus       579 -g--~I~vwd~~~~~~~~~~~~~-~~v~~l~~sp  608 (907)
                       +  .+.+++. +|.....+..+ ..+...+|||
T Consensus       414 ~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        414 QGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence             3  3777786 56666666543 3477788887

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.3e-09  Score=121.52  Aligned_cols=176  Identities=18%  Similarity=0.155  Sum_probs=115.6

Q ss_pred             cEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564          162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (907)
Q Consensus       162 ~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~  238 (907)
                      .|.++|...+. .+.+..+...+....|+|||+.|+..+.+   ..|.+||+.+++... +... .+.+...+|+|||+.
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~-~g~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNF-EGLNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCC-CCCcCCeEECCCCCE
Confidence            47788876444 45555667889999999999998876543   468999998886543 2222 345667999999994


Q ss_pred             EEEEEeCCC--cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCC
Q 002564          239 LLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (907)
Q Consensus       239 ~l~sg~~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (907)
                      ++++.+.+|  .|.+||+.+++... +. .+........|+||++.++..+. ++...+|.++..++..+.+. ..+  .
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~-lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~--~  331 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSR-VT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVG--N  331 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEE-cc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCC--C
Confidence            555555555  68888998886543 33 35556677899999997766553 45545554444433333222 112  2


Q ss_pred             CCeEEEEecCCCEEEEEeCC-C--CEEEEEcee
Q 002564          316 PPLCIRFYANGRHILSAGQD-R--AFRLFSVIQ  345 (907)
Q Consensus       316 ~v~~i~~~~~g~~l~s~~~d-g--~i~iwd~~~  345 (907)
                      ......|+|+|+.++..+.+ +  .|.++|+.+
T Consensus       332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t  364 (430)
T PRK00178        332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR  364 (430)
T ss_pred             CccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence            23457899999999877643 3  355566544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.26  E-value=1.4e-07  Score=95.88  Aligned_cols=265  Identities=12%  Similarity=0.120  Sum_probs=169.1

Q ss_pred             CCcceEEEEEecCeEEEEEcC----eEEEEeC-CeeEEE-EcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCcccc
Q 002564           55 LPKKIRALASYRDYTFAAYGN----HIAVVKR-AHQVAT-WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA  128 (907)
Q Consensus        55 ~~~~I~~la~~~~~~~~a~g~----~I~vw~~-~~~~~~-~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~  128 (907)
                      .++.|+|=.+-.+.+|..+.-    +|+--|. ++.++. ..-|.--...+..||+.++-. ..|.|.++|.++......
T Consensus       224 l~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekl  302 (668)
T COG4946         224 LDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKL  302 (668)
T ss_pred             cCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceee
Confidence            344555555555555555532    2444443 222222 111122223333578887764 478999999988765321


Q ss_pred             cee-eEe---cCCCcccEE----EEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 002564          129 PVG-HVK---LDDKFTPTC----IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC  200 (907)
Q Consensus       129 ~~~-~~~---~~~~~~~~~----~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~  200 (907)
                      .+. .+.   ....++..+    -|++..- ++++..|. |...+.+...+-.++.  +|.+.|.-..+.-+++-++.|.
T Consensus       303 dI~lpl~rk~k~~k~~~pskyledfa~~~G-d~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt  378 (668)
T COG4946         303 DIGLPLDRKKKQPKFVNPSKYLEDFAVVNG-DYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGT  378 (668)
T ss_pred             ecCCccccccccccccCHHHhhhhhccCCC-cEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEec
Confidence            111 000   001111000    0222211 56777755 5678887766665543  4667799999988888899999


Q ss_pred             cCC-eEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC
Q 002564          201 SDG-KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN  279 (907)
Q Consensus       201 ~dg-~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~  279 (907)
                      .|| .+-|+|..+++... +... -+.|.++..++||+ .++++.....|.+.|++++.....-+ ...+-|+...|+|+
T Consensus       379 ~dgD~l~iyd~~~~e~kr-~e~~-lg~I~av~vs~dGK-~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~n  454 (668)
T COG4946         379 NDGDKLGIYDKDGGEVKR-IEKD-LGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHPN  454 (668)
T ss_pred             cCCceEEEEecCCceEEE-eeCC-ccceEEEEEcCCCc-EEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcCC
Confidence            998 89999998776444 3333 57899999999999 78888888999999999998765555 67788999999999


Q ss_pred             CCEEEEEcCCC----cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEe
Q 002564          280 EPVLMSASADN----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG  333 (907)
Q Consensus       280 ~~~l~s~~~d~----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~  333 (907)
                      ++++|-+--+|    .|+++|++...    .... ....+.=.+-+|.||+++|..-+
T Consensus       455 sr~iAYafP~gy~tq~Iklydm~~~K----iy~v-TT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         455 SRWIAYAFPEGYYTQSIKLYDMDGGK----IYDV-TTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ceeEEEecCcceeeeeEEEEecCCCe----EEEe-cCCcccccCcccCCCCcEEEEEe
Confidence            99999887664    68899887642    2211 11222234567889999887554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=2.3e-09  Score=119.40  Aligned_cols=193  Identities=18%  Similarity=0.049  Sum_probs=131.9

Q ss_pred             CCceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEE-EEecCC--e
Q 002564          424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHG--D  497 (907)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg--~  497 (907)
                      ...+....|+|+|+.++..+.+   ..|++|++.++......         ...+.+....|+|+|+.|+ +...+|  .
T Consensus       198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---------~~~g~~~~~~~SpDG~~la~~~~~~g~~~  268 (430)
T PRK00178        198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---------NFEGLNGAPAWSPDGSKLAFVLSKDGNPE  268 (430)
T ss_pred             CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---------CCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence            3568899999999998776543   36899999888654322         2233455789999998876 444454  6


Q ss_pred             EEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeC-C--CeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEE
Q 002564          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD-D--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  574 (907)
Q Consensus       498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-d--g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s  574 (907)
                      |.+||+.+++...............|+|||+.++..+. +  ..|+++|+.+++..+... .........|+|||++|+.
T Consensus       269 Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~  347 (430)
T PRK00178        269 IYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVM  347 (430)
T ss_pred             EEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEE
Confidence            88889998876554444455667889999998877664 2  367888888776533221 2223446789999999987


Q ss_pred             EeCC-C--cEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCe--EEEee
Q 002564          575 SGMD-G--SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG--VYLWV  627 (907)
Q Consensus       575 ~s~D-g--~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~--i~lW~  627 (907)
                      .+.+ +  .|.+||+.+++... +..........|+|||++++.++.++..  |++++
T Consensus       348 ~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~  404 (430)
T PRK00178        348 VHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVS  404 (430)
T ss_pred             EEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence            7643 3  58889998886533 3222223456899999999988765432  44444

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=2.1e-11  Score=131.63  Aligned_cols=271  Identities=16%  Similarity=0.206  Sum_probs=194.5

Q ss_pred             eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCC-
Q 002564          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR-  336 (907)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg-  336 (907)
                      +...++. .|....+|++|+-+.++|+.|+-.|.|+++++.++.    .....++|..+++.+.-+.+|..+++.+.-. 
T Consensus      1092 r~w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~----~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1092 RSWRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS----MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred             ccchhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCcc----ccccccccccccccccccCCcceeeeeccccC
Confidence            3344555 678899999999999999999999999999998774    3455679999999999999998887665433 


Q ss_pred             -CEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecce
Q 002564          337 -AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (907)
Q Consensus       337 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~  415 (907)
                       -..+|++..-...                                                                .|
T Consensus      1167 PlsaLW~~~s~~~~----------------------------------------------------------------~H 1182 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGP----------------------------------------------------------------RH 1182 (1516)
T ss_pred             chHHHhccccccCc----------------------------------------------------------------cc
Confidence             2456665321000                                                                11


Q ss_pred             eeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecC
Q 002564          416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  495 (907)
Q Consensus       416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  495 (907)
                      .+       ..-.++.|+..-.+-++|+......+||++++....++.....    +....-++..|+|+.++++-   |
T Consensus      1183 sf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~----~~~y~~n~a~FsP~D~LIln---d 1248 (1516)
T KOG1832|consen 1183 SF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV----TSSYSNNLAHFSPCDTLILN---D 1248 (1516)
T ss_pred             cc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch----hhhhhccccccCCCcceEee---C
Confidence            11       3345677777777778888888999999999998887542211    22233477889999887763   4


Q ss_pred             CeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEE
Q 002564          496 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  575 (907)
Q Consensus       496 g~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~  575 (907)
                      |.  +||....+.++.+.--..-..-.|||.|.-++..+     .|||++|.++++....-.  -..+.|+..|..+...
T Consensus      1249 Gv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1249 GV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             ce--eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhh
Confidence            43  79999887777775444334457999999888765     489999998877655322  2456787777654432


Q ss_pred             e-----C------------CCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecC
Q 002564          576 G-----M------------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  620 (907)
Q Consensus       576 s-----~------------Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~  620 (907)
                      -     .            -...|.+|....+.+.++.+..++..++-+|...+|+..-..+
T Consensus      1320 ~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe~~~ 1381 (1516)
T KOG1832|consen 1320 LNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIEMED 1381 (1516)
T ss_pred             hhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEeccC
Confidence            1     0            1246677777888899999999999999999999888765543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=4e-09  Score=115.78  Aligned_cols=196  Identities=12%  Similarity=0.027  Sum_probs=129.4

Q ss_pred             CceEEEEEcCCCCE---EEEEeCCC--cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec-----
Q 002564          425 TAVKACTISACGNF---AVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-----  494 (907)
Q Consensus       425 ~~v~~~~~s~~g~~---l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----  494 (907)
                      ....+-.|||||+.   +++...+|  .|++.++.++......         ...+.....+|+|||+.|+..+.     
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt---------~~~g~~~~p~wSPDG~~Laf~s~~~g~~  255 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL---------ALQGNQLMPTFSPRKKLLAFISDRYGNP  255 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee---------cCCCCccceEECCCCCEEEEEECCCCCc
Confidence            44567799999975   33555554  6888888877654432         23444566899999988876552     


Q ss_pred             CCeEEEEECCCC---ceeeeeecC-cceeEEEEeeCCCEEEEEeC-CCeEEEE--Eccc-ceeEEEeecCCCCeeeEEEC
Q 002564          495 HGDIKVWDFKGR---DLKSRWEVG-CSLVKIVYHRVNGLLATVAD-DLVIRLF--DVVA-LRMVRKFEGHTDRITDFCFS  566 (907)
Q Consensus       495 dg~i~iwd~~~~---~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-dg~I~v~--d~~~-~~~~~~~~~h~~~I~~l~fs  566 (907)
                      +..+..|++..+   +........ ......+|+|||+.|+..+. +|...+|  ++.. +.....+..+...+....||
T Consensus       256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS  335 (428)
T PRK01029        256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS  335 (428)
T ss_pred             ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence            223445776653   333333322 34467899999998887663 5644444  5432 23345555555677889999


Q ss_pred             CCCcEEEEEeCC---CcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecC--CeEEEeecc
Q 002564          567 EDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ--NGVYLWVNR  629 (907)
Q Consensus       567 pdg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~--~~i~lW~~~  629 (907)
                      |||++|+..+.+   ..|.+||+.+++..........+.+..|+|||++|+....++  ..|++|++.
T Consensus       336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            999999876543   469999999887755444434578899999999988665432  247777753

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.19  E-value=2.9e-10  Score=120.85  Aligned_cols=287  Identities=16%  Similarity=0.267  Sum_probs=184.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEEccC-CceEEEEeecCCCCEEEEEEecCCC-CEEEEEeCCCcEEEEECCCc-
Q 002564          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR-  257 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~dg~-~~l~sg~~dg~I~iwd~~~~-  257 (907)
                      .+++.++..+|.|+-+|.++.-|. .+.|+.. +....-+.+...-.|-...|+|... .+-++......-.+|++... 
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            567889999999999999998775 4556553 3444444433344677888887532 24444555666778987643 


Q ss_pred             -eeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCC
Q 002564          258 -RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  335 (907)
Q Consensus       258 -~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d  335 (907)
                       +.+.-+..+|...|+.+.|.|..+ .+++++.|-.+..||+....   +.+.....-......+.|+-....++..+..
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---~p~ys~~~w~s~asqVkwnyk~p~vlasshg  179 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---RPFYSTSSWRSAASQVKWNYKDPNVLASSHG  179 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---cceeeeecccccCceeeecccCcchhhhccC
Confidence             444444459999999999999765 78899999999999887653   2222222223334455555422233333333


Q ss_pred             CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecce
Q 002564          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (907)
Q Consensus       336 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~  415 (907)
                      +.+++||.+                                                                       
T Consensus       180 ~~i~vwd~r-----------------------------------------------------------------------  188 (1081)
T KOG0309|consen  180 NDIFVWDLR-----------------------------------------------------------------------  188 (1081)
T ss_pred             CceEEEecc-----------------------------------------------------------------------
Confidence            445555543                                                                       


Q ss_pred             eeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC-CCEEEEEec
Q 002564          416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGY  494 (907)
Q Consensus       416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~  494 (907)
                                                             .|.......       ++|...|.+++|..- ...+.+++.
T Consensus       189 ---------------------------------------~gs~pl~s~-------K~~vs~vn~~~fnr~~~s~~~s~~~  222 (1081)
T KOG0309|consen  189 ---------------------------------------KGSTPLCSL-------KGHVSSVNSIDFNRFKYSEIMSSSN  222 (1081)
T ss_pred             ---------------------------------------CCCcceEEe-------cccceeeehHHHhhhhhhhhcccCC
Confidence                                                   322211111       367777777777642 346788999


Q ss_pred             CCeEEEEECCCC--ceeeeeecCcceeEEEEeeCCCEEEEE--eCCCeEEEEEcc---------c-ceeEEEeecCCCCe
Q 002564          495 HGDIKVWDFKGR--DLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIRLFDVV---------A-LRMVRKFEGHTDRI  560 (907)
Q Consensus       495 dg~i~iwd~~~~--~~~~~~~~~~~i~~~~~s~~~~~la~~--~~dg~I~v~d~~---------~-~~~~~~~~~h~~~I  560 (907)
                      ||+|++||....  +..++.....+|..-++.|-|.-.++-  -.+..+.+++.+         + .+.+.+|.||.+.|
T Consensus       223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V  302 (1081)
T KOG0309|consen  223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV  302 (1081)
T ss_pred             CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence            999999998754  344555566788888888855422221  122244444332         2 36789999999998


Q ss_pred             eeEEECCCC----------cEEEEEeCCCcEEEEEcCC
Q 002564          561 TDFCFSEDG----------KWLLSSGMDGSLRIWDVIL  588 (907)
Q Consensus       561 ~~l~fspdg----------~~l~s~s~Dg~I~vwd~~~  588 (907)
                      ....|-..+          -.|+|-|.|.++|+|-+.+
T Consensus       303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            877774422          2699999999999998764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.18  E-value=5.7e-09  Score=99.62  Aligned_cols=271  Identities=14%  Similarity=0.161  Sum_probs=181.0

Q ss_pred             cCCeEEEEEccCCceEE--EEeecCCCCEEEEEEec---CCCCEEEEEeCCCcEEEEECCCceeeeeeecccc------c
Q 002564          201 SDGKIHVHNVRYDEELV--TFTHSMRGAVTALAFSS---DGQPLLASGASSGVISIWNLEKRRLQSVIREAHD------N  269 (907)
Q Consensus       201 ~dg~I~iwd~~~~~~~~--~~~~~~~~~v~~l~fs~---dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~------~  269 (907)
                      ..|.+.+|++...+...  ++.......+..+.|+-   +|...++-+...|.|.++..........+. +-.      .
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~-~ls~~ki~~~  122 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLR-GLSSKKISVV  122 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeec-ccchhhhhhe
Confidence            34778899887665433  23322245677777763   455466777788999999876655444444 111      1


Q ss_pred             CeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceeccc
Q 002564          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQ  348 (907)
Q Consensus       270 ~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~  348 (907)
                      ...++.|++.+..++++..+|.+.+-+....  .....+..+.|.-+.....|+. +.+.+++||.|+.+..||++.+..
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~--~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEM--VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEeccee--eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence            2457889999999999999999985543322  1122347789999999999987 567889999999999999862210


Q ss_pred             ceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceE
Q 002564          349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK  428 (907)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~  428 (907)
                                                                                                      
T Consensus       201 --------------------------------------------------------------------------------  200 (339)
T KOG0280|consen  201 --------------------------------------------------------------------------------  200 (339)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcC-CCCEEEEEecCCeEEEEECC-CC
Q 002564          429 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFK-GR  506 (907)
Q Consensus       429 ~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~-~~  506 (907)
                               +           +|.-                ..-|...|.+|.-+| ...++++|+.|..|++||.+ -+
T Consensus       201 ---------~-----------i~~n----------------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~  244 (339)
T KOG0280|consen  201 ---------F-----------IWHN----------------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG  244 (339)
T ss_pred             ---------e-----------eeec----------------ceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence                     0           0100                025777888888776 56799999999999999998 46


Q ss_pred             ceeeeeecCcceeEEEEeeCCC-EEEEEeCCCeEEEEEcccc--e---eEEEeecCCCCeeeEEECCCCcEEEEEe-CCC
Q 002564          507 DLKSRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL--R---MVRKFEGHTDRITDFCFSEDGKWLLSSG-MDG  579 (907)
Q Consensus       507 ~~~~~~~~~~~i~~~~~s~~~~-~la~~~~dg~I~v~d~~~~--~---~~~~~~~h~~~I~~l~fspdg~~l~s~s-~Dg  579 (907)
                      +++..-...+.|..+..+|.-. .+.+++.-+-.+|.+.+.+  +   .......|.+-...-.|.....+|+|++ .|+
T Consensus       245 kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk  324 (339)
T KOG0280|consen  245 KPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDK  324 (339)
T ss_pred             CccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecccc
Confidence            7777777779999999999433 3333334444666666544  2   3344556766666666644445788865 577


Q ss_pred             cEE-EEEcCCCc
Q 002564          580 SLR-IWDVILAR  590 (907)
Q Consensus       580 ~I~-vwd~~~~~  590 (907)
                      .++ +|-.-++.
T Consensus       325 ~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  325 KIRQLWLHITGE  336 (339)
T ss_pred             ceeeeeeeccCC
Confidence            655 77655543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.15  E-value=1.8e-08  Score=94.88  Aligned_cols=272  Identities=11%  Similarity=0.088  Sum_probs=178.9

Q ss_pred             cCCcEEEEecCCCe--EEEEEcCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEE
Q 002564          159 QEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA  231 (907)
Q Consensus       159 ~dg~i~iwd~~~~~--~~~~~~~h~~~I~~l~~sp-----~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~  231 (907)
                      ....+-+|++-+..  .+...       +.+.|.|     .-.+||.|+..|...+|...+.+....+-..+...|+-..
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~  122 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK  122 (344)
T ss_pred             ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence            34457777765433  22222       2344554     3458999999999999999977655544433333333322


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeE-ec
Q 002564          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR-FR  310 (907)
Q Consensus       232 fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-~~  310 (907)
                      =..|...-+..++.|.++++.+++.+........ ..-.+.+++++++++++++.+....|-.|.++....  .+++ ..
T Consensus       123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--y~~~~~~  199 (344)
T KOG4532|consen  123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--YIENIYE  199 (344)
T ss_pred             hhcccccceeeccCCcceeEEEEecCcccceeec-cccceeeeEEcCCCceEEEecCCCcceEEEeCCccc--eeeeeEe
Confidence            2223333466778889999998876654444321 112388999999999999999999999998876543  2333 33


Q ss_pred             cCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccccccc
Q 002564          311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (907)
Q Consensus       311 ~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  390 (907)
                      ...+..-.+..|+.....++++.+||++.+||++........                                      
T Consensus       200 a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~--------------------------------------  241 (344)
T KOG4532|consen  200 APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE--------------------------------------  241 (344)
T ss_pred             cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh--------------------------------------
Confidence            445556678899998899999999999999999865432211                                      


Q ss_pred             ceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCccceeeeccccc
Q 002564          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQSGISRGSYLDMSER  468 (907)
Q Consensus       391 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~  468 (907)
                                               .-...+.|.+.++.+.|++-|  .+|+..-.-+.+.+.|+.++............
T Consensus       242 -------------------------~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~  296 (344)
T KOG4532|consen  242 -------------------------ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV  296 (344)
T ss_pred             -------------------------hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc
Confidence                                     011123467899999999877  45666666789999999998776665433222


Q ss_pred             cccCcC-CcEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 002564          469 SNYAHN-GEVVGVACDSTNTLMISAGYHGDIKVWDFKG  505 (907)
Q Consensus       469 ~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~  505 (907)
                      . ..|. ..|.+-.|+.++..+.+...+ .+.=|++.+
T Consensus       297 ~-~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  297 E-RKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             c-ccccccccccccccCCCcccccccch-hhheeeccc
Confidence            2 2344 348888888888766665543 344455543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.15  E-value=3.7e-10  Score=131.21  Aligned_cols=224  Identities=14%  Similarity=0.242  Sum_probs=170.2

Q ss_pred             CEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEE
Q 002564          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS  273 (907)
Q Consensus       194 ~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~  273 (907)
                      +.......++...-|..+-+...   ..++-..|.++.=+|... +.++|+.||.+++|....+..+...+.+-...|+.
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~~~---~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVM---IKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred             ccCCcccCCccccceecccceeE---eecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence            33444444555555554432222   223345788888888887 78899999999999999999888888666689999


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEe---CCCCEEEEEceecccce
Q 002564          274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQDQQSR  350 (907)
Q Consensus       274 l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~---~dg~i~iwd~~~~~~~~  350 (907)
                      +.|+.+|+.+..+..||.+.+|...     ++.......|.......+|-.  ..+++++   .++.+.+||..-.    
T Consensus      2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~---- 2325 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP---- 2325 (2439)
T ss_pred             hhhcccCCceeeeccCCceeecccC-----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC----
Confidence            9999999999999999999999765     356667778888888888875  4566654   3456666663210    


Q ss_pred             eechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEE
Q 002564          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (907)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (907)
                                                                                                      
T Consensus      2326 -------------------------------------------------------------------------------- 2325 (2439)
T KOG1064|consen 2326 -------------------------------------------------------------------------------- 2325 (2439)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceee
Q 002564          431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS  510 (907)
Q Consensus       431 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  510 (907)
                                                .......       ..|.+.++++++-|..+.+++||.+|.|++||++..++++
T Consensus      2326 --------------------------~~~s~v~-------~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2326 --------------------------PMNSLVH-------TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred             --------------------------cccceee-------eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence                                      0000000       2899999999999999999999999999999999988888


Q ss_pred             eeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee
Q 002564          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE  554 (907)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~  554 (907)
                      .++.        ++ ...++++|+..|.++||++.....+..+.
T Consensus      2373 ~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2373 TFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             Hhhh--------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            7765        33 56789999999999999999887777765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.13  E-value=5.7e-10  Score=129.74  Aligned_cols=182  Identities=16%  Similarity=0.251  Sum_probs=144.1

Q ss_pred             cCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP  238 (907)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~  238 (907)
                      .++...-|..+.+...  ++.+-..|.++.-+|...+-++|+.||.|++|....+..+..+.......|+.+.|+.+|. 
T Consensus      2188 ~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn- 2264 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN- 2264 (2439)
T ss_pred             CCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-
Confidence            3444444554333222  2334567888888999999999999999999999999999999876678999999999998 


Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC---CCcEEEEEccCCCCCcceeEeccCCCC
Q 002564          239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (907)
Q Consensus       239 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (907)
                      -+..+..||.+.+|... .+.....+ .|........|..  ..+++++.   ++.+.+||....... .++.  ..|.+
T Consensus      2265 k~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCHDG 2337 (2439)
T ss_pred             ceeeeccCCceeecccC-Ccceeccc-cCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-ceee--eecCC
Confidence            67888889999999986 66666666 8999999999986  56777653   689999986554432 2333  68999


Q ss_pred             CCeEEEEecCCCEEEEEeCCCCEEEEEceecccce
Q 002564          316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (907)
Q Consensus       316 ~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~  350 (907)
                      .+++++|.|..+.|++||.+|.+++||++..+...
T Consensus      2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred             CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence            99999999999999999999999999997655433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.09  E-value=8.6e-09  Score=98.44  Aligned_cols=237  Identities=13%  Similarity=0.111  Sum_probs=159.0

Q ss_pred             EEEEEecCCcEEEEecCCCCcc--ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeE--EEEEcCC
Q 002564          105 HILSIDIDGNMFIWAFKGIEEN--LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK--LYEFKGW  180 (907)
Q Consensus       105 ~l~s~~~dg~v~vWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~h  180 (907)
                      .|+-+..+|.|.++.....+..  ..++...........+.-|++.+  ..++++-.+|.+.+-+......  +++.++|
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~--~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H  164 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSG--TKIFVSDSRGSISGVYETEMVLEKVQTWKVH  164 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccC--ceEEEEcCCCcEEEEecceeeeeeccccccc
Confidence            4555666888888876554331  11122111111223344578888  7899999999999777655544  4488999


Q ss_pred             CCCEEEEEEcCC-CCEEEEEecCCeEEEEEcc-CCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC-c
Q 002564          181 GSSISSCVSSPA-LDVVAVGCSDGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-R  257 (907)
Q Consensus       181 ~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~-~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~-~  257 (907)
                      .-+.+.+.|+.. .+++.+|+.||.+..||++ .++.+..-..-|...|.+|.-+|...+++++|+.|-.|++||.++ +
T Consensus       165 e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~  244 (339)
T KOG0280|consen  165 EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG  244 (339)
T ss_pred             ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence            999999999864 4689999999999999999 444554433344678999999988777999999999999999984 5


Q ss_pred             eeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCC-cceeEeccCCCCCCeEEEEecCCCEEEEEe-C
Q 002564          258 RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAG-Q  334 (907)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~-~  334 (907)
                      +++..-.  -.+.|..+.++|.-. .++.++.-+-.++-+.+..... ...+...+.|.+-...-.|......+++|+ .
T Consensus       245 kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY  322 (339)
T KOG0280|consen  245 KPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY  322 (339)
T ss_pred             CccccCc--cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecc
Confidence            6665544  558999999998543 3333444445677666544332 123445556666555555544345677765 5


Q ss_pred             CCCEE-EEEcee
Q 002564          335 DRAFR-LFSVIQ  345 (907)
Q Consensus       335 dg~i~-iwd~~~  345 (907)
                      |+.++ +|-..+
T Consensus       323 Dk~~~~~Wl~~t  334 (339)
T KOG0280|consen  323 DKKIRQLWLHIT  334 (339)
T ss_pred             ccceeeeeeecc
Confidence            66655 775443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.08  E-value=9.3e-08  Score=104.98  Aligned_cols=304  Identities=13%  Similarity=0.103  Sum_probs=182.4

Q ss_pred             CEEEEEecCCcEEEEecCCCeEEEEEcCCCC-CE-E-----EEEEcC--CCCEEEEEecCCeEEEEEccCCceEEEEeec
Q 002564          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGS-SI-S-----SCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHS  222 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~-~I-~-----~l~~sp--~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~  222 (907)
                      +++++++.+|.+.-+|.++|+.+........ .+ .     .+.-+|  ++..+++++.+|.+..+|.++|+.+.+....
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  149 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA  149 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence            5788998999999999999999988754220 00 0     001111  3567788888999999999999998877654


Q ss_pred             CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeccccc----CeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564          223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN----AIISLHFFANEPVLMSASADNSIKMWIFD  298 (907)
Q Consensus       223 ~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~----~V~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (907)
                        +.+.+--.-.++  .++.++.+|.|..+|..+|+.+.........    ...+-...  +..++.++.++.+..++..
T Consensus       150 --~~~~ssP~v~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        150 --GEALSRPVVSDG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             --CceecCCEEECC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEEEEcc
Confidence              333321111244  4666778899999999999988777621110    00111111  2356667778888777765


Q ss_pred             CCCCCcceeEec-cC-CC-CCCeEEEEec--CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564          299 TTDGDPRLLRFR-SG-HS-APPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (907)
Q Consensus       299 ~~~~~~~~~~~~-~~-h~-~~v~~i~~~~--~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (907)
                      .+...++..... .+ +. .....+..+|  .+..++.++.+|.+..+|..+++..                        
T Consensus       224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~------------------------  279 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV------------------------  279 (394)
T ss_pred             CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE------------------------
Confidence            543222211000 00 00 0001111122  2456777778888888887665432                        


Q ss_pred             CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 002564          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL  453 (907)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~  453 (907)
                                                     |....               .....+  ...+..+++++.+|.+..+|.
T Consensus       280 -------------------------------W~~~~---------------~~~~~~--~~~~~~vy~~~~~g~l~ald~  311 (394)
T PRK11138        280 -------------------------------WKREY---------------GSVNDF--AVDGGRIYLVDQNDRVYALDT  311 (394)
T ss_pred             -------------------------------EeecC---------------CCccCc--EEECCEEEEEcCCCeEEEEEC
Confidence                                           22110               000011  124677888889999999999


Q ss_pred             CCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeE-EEEeeCCCEEE
Q 002564          454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVK-IVYHRVNGLLA  531 (907)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~-~~~s~~~~~la  531 (907)
                      .+|+.+......      .+ ....+..+  .+..++.++.||.+...|..+|+.+...+.. ..+.+ ..+  .++.|+
T Consensus       312 ~tG~~~W~~~~~------~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~  380 (394)
T PRK11138        312 RGGVELWSQSDL------LH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLL  380 (394)
T ss_pred             CCCcEEEccccc------CC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEE
Confidence            998776543210      11 11122222  2457888899999999999999988877653 22322 122  356788


Q ss_pred             EEeCCCeEEEEEc
Q 002564          532 TVADDLVIRLFDV  544 (907)
Q Consensus       532 ~~~~dg~I~v~d~  544 (907)
                      +++.||.++.++.
T Consensus       381 v~t~~G~l~~~~~  393 (394)
T PRK11138        381 IQARDGTVYAITR  393 (394)
T ss_pred             EEeCCceEEEEeC
Confidence            8899999888764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.08  E-value=1.2e-07  Score=114.83  Aligned_cols=273  Identities=13%  Similarity=0.124  Sum_probs=153.6

Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeec-c------------cccCeEEEEEecCCCEEEEEc-CCCcEE
Q 002564          228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE-A------------HDNAIISLHFFANEPVLMSAS-ADNSIK  293 (907)
Q Consensus       228 ~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~------------h~~~V~~l~~~~~~~~l~s~~-~d~~i~  293 (907)
                      ..+++++++..++++-..++.|.+||... ..+..+.. +            +-.....+++.++++.|+++. ..+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788875443777777889999999754 43333321 1            122468899999888666654 456788


Q ss_pred             EEEccCCCCCcceeEeccC-----------------CCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechh
Q 002564          294 MWIFDTTDGDPRLLRFRSG-----------------HSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQR  355 (907)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~-----------------h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  355 (907)
                      ++|+....     +..+.+                 .-..+..++++| ++..+++.+.++.|++|+..++.... +.. 
T Consensus       650 ~id~~~~~-----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G-  722 (1057)
T PLN02919        650 EIDFVNET-----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSG-  722 (1057)
T ss_pred             EEecCCCE-----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-Eec-
Confidence            88765431     111110                 012456788888 55566666777888888865432110 000 


Q ss_pred             hhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCC
Q 002564          356 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC  435 (907)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  435 (907)
                                                                 ++.....+   ...      ...........++++|+
T Consensus       723 -------------------------------------------~G~~~~~~---g~~------~~~~~~~~P~GIavspd  750 (1057)
T PLN02919        723 -------------------------------------------DGYERNLN---GSS------GTSTSFAQPSGISLSPD  750 (1057)
T ss_pred             -------------------------------------------CCccccCC---CCc------cccccccCccEEEEeCC
Confidence                                                       00000000   000      00000133455677777


Q ss_pred             CCEEEE-EeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec----CCeEEEEECCCCceee
Q 002564          436 GNFAVL-GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY----HGDIKVWDFKGRDLKS  510 (907)
Q Consensus       436 g~~l~~-g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~  510 (907)
                      |+.+++ .+.++.|++||+.++..                   .          ++.++.    +....+++........
T Consensus       751 G~~LYVADs~n~~Irv~D~~tg~~-------------------~----------~~~gg~~~~~~~l~~fG~~dG~g~~~  801 (1057)
T PLN02919        751 LKELYIADSESSSIRALDLKTGGS-------------------R----------LLAGGDPTFSDNLFKFGDHDGVGSEV  801 (1057)
T ss_pred             CCEEEEEECCCCeEEEEECCCCcE-------------------E----------EEEecccccCcccccccCCCCchhhh
Confidence            664433 33446677776553310                   0          000000    0011111110000000


Q ss_pred             eeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee-------------cCCCCeeeEEECCCCcEEEEEeC
Q 002564          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-------------GHTDRITDFCFSEDGKWLLSSGM  577 (907)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~-------------~h~~~I~~l~fspdg~~l~s~s~  577 (907)
                      .   ......++++++|+++++-..++.|++||..++.......             +.-.....++++++|+.+++-+.
T Consensus       802 ~---l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        802 L---LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN  878 (1057)
T ss_pred             h---ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence            0   1234588999999988888899999999998876543221             12235778999999999998889


Q ss_pred             CCcEEEEEcCCCcee
Q 002564          578 DGSLRIWDVILARQI  592 (907)
Q Consensus       578 Dg~I~vwd~~~~~~~  592 (907)
                      ++.|++||+.+++..
T Consensus       879 Nn~Irvid~~~~~~~  893 (1057)
T PLN02919        879 NSLIRYLDLNKGEAA  893 (1057)
T ss_pred             CCEEEEEECCCCccc
Confidence            999999999988753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.03  E-value=2.3e-07  Score=112.48  Aligned_cols=261  Identities=13%  Similarity=0.171  Sum_probs=159.5

Q ss_pred             EEEEEcCC-CCEEEEEecCCeEEEEEccCCceEEEEee-cC------------CCCEEEEEEecCCCCEEEEEeCCCcEE
Q 002564          185 SSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELVTFTH-SM------------RGAVTALAFSSDGQPLLASGASSGVIS  250 (907)
Q Consensus       185 ~~l~~sp~-~~~la~g~~dg~I~iwd~~~~~~~~~~~~-~~------------~~~v~~l~fs~dg~~~l~sg~~dg~I~  250 (907)
                      ..++++++ +++.++-+.++.|++||.. ++.+..+.. +.            -.....+++.+++..+.++-..++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35788875 4555565677899999975 554444432 10            123688999998873344444567899


Q ss_pred             EEECCCceeeeeeeccc---------------ccCeEEEEEec-CCCEEEEEcCCCcEEEEEccCCCCCccee------E
Q 002564          251 IWNLEKRRLQSVIREAH---------------DNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLL------R  308 (907)
Q Consensus       251 iwd~~~~~~~~~~~~~h---------------~~~V~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~------~  308 (907)
                      ++|+.++........+.               -.....++++| ++.++++.+.++.|++|+......  ...      .
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGYER  727 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCccc
Confidence            99987765432211000               12346899999 566667777788999997654310  000      0


Q ss_pred             eccC------CCCCCeEEEEecCCCEEE-EEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeee
Q 002564          309 FRSG------HSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (907)
Q Consensus       309 ~~~~------h~~~v~~i~~~~~g~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  381 (907)
                      ...+      .-..+..++++|+++.|+ +-+.++.|++||+.++.                                  
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~----------------------------------  773 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG----------------------------------  773 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc----------------------------------
Confidence            0011      123567799999887554 44556788888864221                                  


Q ss_pred             cccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCc
Q 002564          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----GGWIERFNLQSGI  457 (907)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----dg~i~i~d~~~~~  457 (907)
                                                                   +          .+++|+.    +......+. .+.
T Consensus       774 ---------------------------------------------~----------~~~~gg~~~~~~~l~~fG~~-dG~  797 (1057)
T PLN02919        774 ---------------------------------------------S----------RLLAGGDPTFSDNLFKFGDH-DGV  797 (1057)
T ss_pred             ---------------------------------------------E----------EEEEecccccCcccccccCC-CCc
Confidence                                                         1          1111110    000001000 000


Q ss_pred             cceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC--------------cceeEEEE
Q 002564          458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--------------CSLVKIVY  523 (907)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------~~i~~~~~  523 (907)
                      ..           ...-....+++++++|..+++-..++.|++||..++.........              .....+++
T Consensus       798 g~-----------~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav  866 (1057)
T PLN02919        798 GS-----------EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL  866 (1057)
T ss_pred             hh-----------hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE
Confidence            00           011223468999999998888889999999999887655433211              25678999


Q ss_pred             eeCCCEEEEEeCCCeEEEEEccccee
Q 002564          524 HRVNGLLATVADDLVIRLFDVVALRM  549 (907)
Q Consensus       524 s~~~~~la~~~~dg~I~v~d~~~~~~  549 (907)
                      +++|+++++-+.++.|++||+.+++.
T Consensus       867 d~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        867 GENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             eCCCCEEEEECCCCEEEEEECCCCcc
Confidence            99999888888999999999998865

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=2.4e-09  Score=110.05  Aligned_cols=287  Identities=17%  Similarity=0.187  Sum_probs=191.6

Q ss_pred             ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC---cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEE
Q 002564          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (907)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd  342 (907)
                      +|...|..++-..+.+-+++++.|.+|++|.+......   ..+..++..|..+|.++.|..+-++++++  ||.+.+||
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWD  810 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWD  810 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeec
Confidence            89999999998889999999999999999998765432   23667788999999999999988877765  78899999


Q ss_pred             ceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCC
Q 002564          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (907)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~  422 (907)
                      .-.++......                                                   |+.+            .+
T Consensus       811 PFigr~Laq~~---------------------------------------------------dapk------------~~  827 (1034)
T KOG4190|consen  811 PFIGRLLAQME---------------------------------------------------DAPK------------EG  827 (1034)
T ss_pred             ccccchhHhhh---------------------------------------------------cCcc------------cC
Confidence            76544332110                                                   0000            01


Q ss_pred             CCCceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEE
Q 002564          423 NPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (907)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  501 (907)
                      ..+.|.++. +-+...++.| +...+|+++|..++.-...+....   ..+.+..+.++++.+.|+.++.+-..|+|.+.
T Consensus       828 a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn---a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~L  903 (1034)
T KOG4190|consen  828 AGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN---APGPNALTRAIAVADKGNKLAAALSNGCIAIL  903 (1034)
T ss_pred             CCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEecc---CCCCchheeEEEeccCcchhhHHhcCCcEEEE
Confidence            112222222 1133444445 678899999999987776664211   13455679999999999999999999999999


Q ss_pred             ECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEE-EEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCC
Q 002564          502 DFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL-FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG  579 (907)
Q Consensus       502 d~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v-~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg  579 (907)
                      |..+|+.+..+... .....++- |..+.++....|.++.| |..-.+....+.+....+..-  .-.-|.-|+++....
T Consensus       904 DaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppepahf--lqsvgpSLV~a~~Gn  980 (1034)
T KOG4190|consen  904 DARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHF--LQSVGPSLVTAQNGN  980 (1034)
T ss_pred             ecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhh--hhccCceeEEeccCc
Confidence            99999988877543 33333332 45566777777888888 877777665555533333221  112366788887777


Q ss_pred             cEEEEEcC-C---CceeeEee---eCCceEEEEECCCCceEEEEEecCCeEEE
Q 002564          580 SLRIWDVI-L---ARQIDAIH---VDVSITALSLSPNMDVLATAHVDQNGVYL  625 (907)
Q Consensus       580 ~I~vwd~~-~---~~~~~~~~---~~~~v~~l~~spdg~~lat~~~d~~~i~l  625 (907)
                      .+.||.-. .   -..+..++   .....++++.-|-..-...+...|. |.+
T Consensus       981 ~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~-IaL 1032 (1034)
T KOG4190|consen  981 ILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA-IAL 1032 (1034)
T ss_pred             EEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCc-eee
Confidence            78888421 1   11222232   3445788888886655555655553 543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=1.2e-07  Score=103.38  Aligned_cols=190  Identities=11%  Similarity=-0.022  Sum_probs=128.2

Q ss_pred             ceEEEEEcCCCCE-EEEEeCC---CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE-ec--CCeE
Q 002564          426 AVKACTISACGNF-AVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GY--HGDI  498 (907)
Q Consensus       426 ~v~~~~~s~~g~~-l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~--dg~i  498 (907)
                      ......|+|||+. ++..+..   ..|+++|+.+++.....         ...+......|+|||+.++.. +.  +..|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  259 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI  259 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence            5678899999985 6544333   47999999888765543         234556677899999866543 33  3568


Q ss_pred             EEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC-C--eEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEE
Q 002564          499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS  575 (907)
Q Consensus       499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-g--~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~  575 (907)
                      .++|+.+++...............|+|||+.|+..++. +  .|.++|+.+++..+.... ..  ....|||||++|+..
T Consensus       260 y~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~  336 (419)
T PRK04043        260 YLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYS  336 (419)
T ss_pred             EEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEE
Confidence            88898888755443333334556899999988877643 2  688889988776443321 11  124899999999876


Q ss_pred             eCC---------CcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564          576 GMD---------GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       576 s~D---------g~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (907)
                      +..         ..|.+.|+.++.... +..........|||||+.|+.....+..-.||-+
T Consensus       337 ~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~  397 (419)
T PRK04043        337 SRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGII  397 (419)
T ss_pred             EcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence            643         368888988886533 3323334468999999999888766543445543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.96  E-value=4.5e-08  Score=93.96  Aligned_cols=335  Identities=14%  Similarity=0.189  Sum_probs=203.2

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc-e----EEEEeecC-----------CCCEEEEEEecCC-CCEEEEE
Q 002564          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-E----LVTFTHSM-----------RGAVTALAFSSDG-QPLLASG  243 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~-~----~~~~~~~~-----------~~~v~~l~fs~dg-~~~l~sg  243 (907)
                      ...|+++.|...|.+|++|...|.|.+|.-.... +    ...|+.+.           ...|..+.|..++ +..+...
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            5679999999999999999999999999765332 1    11222221           2367788887654 3455566


Q ss_pred             eCCCcEEEEECCCce------------------------------------------eeeeeecccccCeEEEEEecCCC
Q 002564          244 ASSGVISIWNLEKRR------------------------------------------LQSVIREAHDNAIISLHFFANEP  281 (907)
Q Consensus       244 ~~dg~I~iwd~~~~~------------------------------------------~~~~~~~~h~~~V~~l~~~~~~~  281 (907)
                      +.|.+|++|.+....                                          +.+....+|..-|.++.|..|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            779999999774320                                          00112146788899999999998


Q ss_pred             EEEEEcCCCcEEEEEccCCCCCcceeEeccCCC-----CCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechh
Q 002564          282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-----APPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQR  355 (907)
Q Consensus       282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~-----~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  355 (907)
                      .++++. |=.|.+|+++..++...++... .|.     .-|++..|+| ....+...+..|.|++-|++.......    
T Consensus       186 t~lSaD-dLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn----  259 (460)
T COG5170         186 TLLSAD-DLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN----  259 (460)
T ss_pred             eeeecc-ceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC----
Confidence            888775 7789999998887766655433 332     3578888998 445666777888999988764321100    


Q ss_pred             hhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCC
Q 002564          356 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC  435 (907)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  435 (907)
                                                                                                    ++
T Consensus       260 ------------------------------------------------------------------------------~~  261 (460)
T COG5170         260 ------------------------------------------------------------------------------SK  261 (460)
T ss_pred             ------------------------------------------------------------------------------ch
Confidence                                                                                          00


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC-ceeeeeec
Q 002564          436 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEV  514 (907)
Q Consensus       436 g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~  514 (907)
                        .+.--+.||          ....-+        .+-...|..+.|+++|+++++-+. -++++||.... .++.++..
T Consensus       262 --klfe~~~D~----------v~~~ff--------~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~  320 (460)
T COG5170         262 --KLFELTIDG----------VDVDFF--------EEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM  320 (460)
T ss_pred             --hhhhhccCc----------ccchhH--------HHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence              000000000          000000        134567889999999999987765 78999998743 45555533


Q ss_pred             C-------------cc---eeEEEEeeCCCEEEEEeCCCeEEEEEcccc-----eeEEEeecCCC----------CeeeE
Q 002564          515 G-------------CS---LVKIVYHRVNGLLATVADDLVIRLFDVVAL-----RMVRKFEGHTD----------RITDF  563 (907)
Q Consensus       515 ~-------------~~---i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-----~~~~~~~~h~~----------~I~~l  563 (907)
                      +             ..   -..+.||.|.+.+.+|+..+..-+|-..+.     -.+..+..|..          .|...
T Consensus       321 h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kk  400 (460)
T COG5170         321 HCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKK  400 (460)
T ss_pred             HHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCCCCcceEEEecccCCcccccCcccccccccc
Confidence            2             11   235678888889999988887777764331     11222222221          11111


Q ss_pred             E-ECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEee
Q 002564          564 C-FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       564 ~-fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~  627 (907)
                      . ...+.....+.+.+|.+..-.=     -..+.....|....|+|-..-+|.+..+.  ++++.
T Consensus       401 d~~kn~~~rs~ss~a~g~~~~~eD-----~d~ld~~k~ilh~sWhp~e~svaiaatnn--lfvfs  458 (460)
T COG5170         401 DKLKNNDWRSVSSSADGFVVACED-----PDNLDLLKKILHRSWHPFEDSVAIAATNN--LFVFS  458 (460)
T ss_pred             cccccccccccccccCcceeeccC-----cchhHHHHHHHhhccCCcccceeeeecCc--eEEEe
Confidence            1 1111122444444554433211     12233344577788999888888887775  66654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.95  E-value=5.9e-09  Score=104.22  Aligned_cols=171  Identities=17%  Similarity=0.218  Sum_probs=122.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  504 (907)
                      .....+..++.+++++++..+....+++.........+....  ........++.+..+......-.++....+.+|...
T Consensus        63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~  140 (390)
T KOG3914|consen   63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD  140 (390)
T ss_pred             ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence            345556778899999999999988888776554322211000  001122233333333333333334555667777777


Q ss_pred             CCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEe-ecCCCCeeeEEECCCCcEEEEEeCCCcEEE
Q 002564          505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLRI  583 (907)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~-~~h~~~I~~l~fspdg~~l~s~s~Dg~I~v  583 (907)
                      .+.....+.+-+.+..++++||+++++++..|..|+|-.....-.+..| -||+.-|..++.-++ +.|+++|.|++|++
T Consensus       141 ~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  141 SGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             ccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence            7777777777799999999999999999999999999887765555554 479999999999865 56899999999999


Q ss_pred             EEcCCCceeeEeeeC
Q 002564          584 WDVILARQIDAIHVD  598 (907)
Q Consensus       584 wd~~~~~~~~~~~~~  598 (907)
                      ||+.+|+++.++...
T Consensus       220 Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  220 WDITSGKLLDTCDLS  234 (390)
T ss_pred             EecccCCcccccchh
Confidence            999999999877653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=2.6e-09  Score=109.84  Aligned_cols=288  Identities=15%  Similarity=0.215  Sum_probs=179.4

Q ss_pred             EEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-------eeeeeeecccccCeEEEEEecCCCEEEEEcC
Q 002564          216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-------RLQSVIREAHDNAIISLHFFANEPVLMSASA  288 (907)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~  288 (907)
                      +..+.+| ...|..++--.+.. -+++++.|.+|++|.++..       .+..++. +|..+|.++.|..+-+.++++  
T Consensus       728 L~nf~GH-~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~Sc--  802 (1034)
T KOG4190|consen  728 LCNFTGH-QEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIASC--  802 (1034)
T ss_pred             eecccCc-HHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccceeeec--
Confidence            3444444 66777776555554 6889999999999998642       4667777 899999999999998888876  


Q ss_pred             CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec--CCCEEE-EEeCCCCEEEEEceecccceeechhhhhHHHhhcc
Q 002564          289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK  365 (907)
Q Consensus       289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~g~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  365 (907)
                      ||.|.+||--.+....+...  ....+.+..+...+  +...++ .++...+++++|.+...-..++..           
T Consensus       803 D~giHlWDPFigr~Laq~~d--apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV-----------  869 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMED--APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV-----------  869 (1034)
T ss_pred             cCcceeecccccchhHhhhc--CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe-----------
Confidence            78999997544321111111  11122333333333  333333 347788999999876654443211           


Q ss_pred             chhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC
Q 002564          366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG  445 (907)
Q Consensus       366 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d  445 (907)
                                                                -+          .++....++++++.+.|+++++|-++
T Consensus       870 ------------------------------------------cn----------a~~Pna~~R~iaVa~~GN~lAa~LSn  897 (1034)
T KOG4190|consen  870 ------------------------------------------CN----------APGPNALTRAIAVADKGNKLAAALSN  897 (1034)
T ss_pred             ------------------------------------------cc----------CCCCchheeEEEeccCcchhhHHhcC
Confidence                                                      11          11233678999999999999999999


Q ss_pred             CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEE-EECCCCceeeeeecCcceeEEEEe
Q 002564          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV-WDFKGRDLKSRWEVGCSLVKIVYH  524 (907)
Q Consensus       446 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~i~~~~~s  524 (907)
                      |.|.+.|..+|..+..+.        ........++ .|..+.++....|.++.+ |...++....+.+.+..... -..
T Consensus       898 Gci~~LDaR~G~vINswr--------pmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepah-flq  967 (1034)
T KOG4190|consen  898 GCIAILDARNGKVINSWR--------PMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH-FLQ  967 (1034)
T ss_pred             CcEEEEecCCCceeccCC--------cccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh-hhh
Confidence            999999999999887664        2222333333 245567888888888888 87766655444432211100 011


Q ss_pred             eCCCEEEEEeCCCeEEEEEccc----ceeEEEee--cCCCCeeeEEECCCCcEEEEEeCCCcEEE
Q 002564          525 RVNGLLATVADDLVIRLFDVVA----LRMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRI  583 (907)
Q Consensus       525 ~~~~~la~~~~dg~I~v~d~~~----~~~~~~~~--~h~~~I~~l~fspdg~~l~s~s~Dg~I~v  583 (907)
                      .-|.-++++.....+.||--..    ...+.+++  ...+..++++--|=+.-+..|...|.|++
T Consensus       968 svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  968 SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            1244555655555666663211    01111222  23466788888886666666878888765

>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=98.93  E-value=1.8e-09  Score=93.82  Aligned_cols=105  Identities=19%  Similarity=0.337  Sum_probs=98.5

Q ss_pred             CChHHHHHHHHhCCCCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHh--cCCCHHhHHHHHHHHHHhhcc
Q 002564          785 KNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEIS--CRNNFEFIQAVIRLFLKIHGE  862 (907)
Q Consensus       785 ~~~~~~~~~l~~~~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~h~~  862 (907)
                      ||..-+.+.|.+.+|+.|+..+++|.+               .++..||++|.+++.  ...+.|++..|+..+|+.||.
T Consensus         1 Nd~~ll~~vl~~~~~~~I~~tv~~Lp~---------------~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~   65 (110)
T PF04003_consen    1 NDEELLLEVLERIPPSDIENTVRSLPF---------------SYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGS   65 (110)
T ss_pred             CHHHHHHHHHhhCCHHHHHHHHHhCCH---------------HHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Confidence            456788999999999999999999976               899999999999887  477999999999999999999


Q ss_pred             ccccc-hHHHHHHHHHHHHHHHHHHHHHHhhccceeeehhccc
Q 002564          863 TVRCH-TKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSN  904 (907)
Q Consensus       863 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  904 (907)
                      .|.+. +++++.|..|++.+++.-+.+.++++.|.+.++|+.+
T Consensus        66 ~l~~~~~~~~~~L~~L~~~l~~~~~~l~~l~~~n~~~L~~l~~  108 (110)
T PF04003_consen   66 YLSSSSPELRPVLRSLQKILRERLQNLSKLLDLNLGRLDYLLS  108 (110)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999 9999999999999999999999999999999999864

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.93  E-value=1.1e-08  Score=109.15  Aligned_cols=200  Identities=17%  Similarity=0.259  Sum_probs=148.3

Q ss_pred             cccEEEEcCCCCCCEEEEEecCCcEEEEecCCC-eE---EEEEcCCCCCEEEEEEcCC--CCEEEEEecCCeEEEEEcc-
Q 002564          139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KK---LYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVR-  211 (907)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~-~~---~~~~~~h~~~I~~l~~sp~--~~~la~g~~dg~I~iwd~~-  211 (907)
                      ....+.++|.+  +-++.++..| +.+.|+... .+   ++.+.  .-.|-...|+|.  ..+-++......-.+|++. 
T Consensus        26 ~~~a~si~p~g--rdi~lAsr~g-l~i~dld~p~~ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~  100 (1081)
T KOG0309|consen   26 GFNAVSINPSG--RDIVLASRQG-LYIIDLDDPFTPPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK  100 (1081)
T ss_pred             cccceeecccc--chhhhhhhcC-eEEEeccCCCCCceeeeccC--cchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence            34566788988  7788898888 777777543 22   22222  223555666664  4566666666778899986 


Q ss_pred             -CCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeEEEEEecCCCEEEEEcCC
Q 002564          212 -YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (907)
Q Consensus       212 -~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d  289 (907)
                       +.+.+.-+.++|...|+.+.|.|....++++++.|-.+..||+++. ..+.... .-...-..+.|+...+.+.+.+..
T Consensus       101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p~vlasshg  179 (1081)
T KOG0309|consen  101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDPNVLASSHG  179 (1081)
T ss_pred             CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-cccccCceeeecccCcchhhhccC
Confidence             3445555566678899999999999889999999999999999886 4455554 344566889999877777777778


Q ss_pred             CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecc
Q 002564          290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQ  347 (907)
Q Consensus       290 ~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~  347 (907)
                      +.|.+||...+.   ..+...++|...|..+.|.. ....+.+++.||+|+.||.....
T Consensus       180 ~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  180 NDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             CceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            899999987665   45667778999999999976 44578899999999999976543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.90  E-value=2.7e-07  Score=87.18  Aligned_cols=228  Identities=9%  Similarity=0.002  Sum_probs=145.9

Q ss_pred             eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEE-EEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCC
Q 002564          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW  180 (907)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h  180 (907)
                      .-.+|+.++..|...+|...+.+...   .....+...+... -.....  -.+..++.|.++++.+++-+..-......
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~---~~cd~snn~v~~~~r~cd~~--~~~~i~sndht~k~~~~~~~s~~~~~h~~  157 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHL---YQCDVSNNDVTLVKRYCDLK--FPLNIASNDHTGKTMVVSGDSNKFAVHNQ  157 (344)
T ss_pred             cccEEEeccccceeeeecccCcccce---eeecccccchhhhhhhcccc--cceeeccCCcceeEEEEecCcccceeecc
Confidence            45689999999999999998876532   1111121111000 011111  24777888999999887654333222221


Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc--eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce
Q 002564          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~  258 (907)
                      .-.+.+++++++++++++.+....|..|.+....  .+.....+....-.+.+|+.... .+|++..||++.|||++...
T Consensus       158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccc
Confidence            2338899999999999999999999999987543  23323444455678889998887 89999999999999998763


Q ss_pred             ee----eeeecccccCeEEEEEecCCC--EEEEEcCCCcEEEEEccCCCCCcceeE---eccCCC-CCCeEEEEecCCCE
Q 002564          259 LQ----SVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLR---FRSGHS-APPLCIRFYANGRH  328 (907)
Q Consensus       259 ~~----~~~~~~h~~~V~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~---~~~~h~-~~v~~i~~~~~g~~  328 (907)
                      ..    ...+..|.+.+..+.|++.|.  +|+..-.-+.+.+.|++.......++.   ....|. ..+....|+.++..
T Consensus       237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s  316 (344)
T KOG4532|consen  237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES  316 (344)
T ss_pred             cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence            32    222346899999999998765  444444446677777665432222211   111233 33677777776666


Q ss_pred             EEEEeCC
Q 002564          329 ILSAGQD  335 (907)
Q Consensus       329 l~s~~~d  335 (907)
                      +.+.+.+
T Consensus       317 ~~v~~e~  323 (344)
T KOG4532|consen  317 NDVKNEL  323 (344)
T ss_pred             cccccch
Confidence            6555544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.90  E-value=2.6e-06  Score=93.52  Aligned_cols=301  Identities=9%  Similarity=0.022  Sum_probs=178.5

Q ss_pred             CCeEEEEEEeCCeEEEEEcCcceEEEecCCCC----------cce-EEEEEecCeEEEEEc-CeEEEEeC--CeeEEEEc
Q 002564           25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLP----------KKI-RALASYRDYTFAAYG-NHIAVVKR--AHQVATWS   90 (907)
Q Consensus        25 ~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~----------~~I-~~la~~~~~~~~a~g-~~I~vw~~--~~~~~~~~   90 (907)
                      .++.+.+++.++.+.-+|..+|+.+-......          ..+ ..+++..+..|+++. +.++.+|.  ++.+-+..
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            35566667777899999999999887652211          011 234566667777664 45888884  55555433


Q ss_pred             ccccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCc-ccEEEEcCCCCCCEEEEEecCCcEEEEecC
Q 002564           91 RHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF-TPTCIMHPDTYLNKVIVGSQEGSLQLWNIS  169 (907)
Q Consensus        91 ~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~  169 (907)
                      .......+....+..++.++.+|.+.-+|..+++..    -........ ......+|.-....+++++.+|.+..+|..
T Consensus       148 ~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~----W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        148 VAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVK----WTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             CCCceecCCEEECCEEEEECCCCEEEEEEccCCCEe----eeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence            222212222345677888888999999999999873    333221110 000001111011468888899999999999


Q ss_pred             CCeEEEEEcCCCC-------CEEEEEEcC--CCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEE
Q 002564          170 TKKKLYEFKGWGS-------SISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL  240 (907)
Q Consensus       170 ~~~~~~~~~~h~~-------~I~~l~~sp--~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l  240 (907)
                      +|+.+........       ....+..+|  .+..+++++.+|.+..+|..+|+.+.+....   ....+..  ++. .+
T Consensus       224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~~--~~~-~v  297 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG---SVNDFAV--DGG-RI  297 (394)
T ss_pred             CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC---CccCcEE--ECC-EE
Confidence            9998776542110       011112233  3557777888999999999999887665432   1122222  344 56


Q ss_pred             EEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeE-
Q 002564          241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC-  319 (907)
Q Consensus       241 ~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~-  319 (907)
                      +.++.+|.+..+|..+++.+............+...  .+..++.++.||.+...|..++    +.+....-....+.+ 
T Consensus       298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG----~~~~~~~~~~~~~~s~  371 (394)
T PRK11138        298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDG----RFVAQQKVDSSGFLSE  371 (394)
T ss_pred             EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCC----CEEEEEEcCCCcceeC
Confidence            677789999999999997765443111111222222  2447788888999988876554    233222222222221 


Q ss_pred             EEEecCCCEEEEEeCCCCEEEEEc
Q 002564          320 IRFYANGRHILSAGQDRAFRLFSV  343 (907)
Q Consensus       320 i~~~~~g~~l~s~~~dg~i~iwd~  343 (907)
                      ..+  .+..|+.++.||.|..++.
T Consensus       372 P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        372 PVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CEE--ECCEEEEEeCCceEEEEeC
Confidence            122  2457899999999888764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.90  E-value=4.4e-08  Score=98.09  Aligned_cols=171  Identities=13%  Similarity=0.194  Sum_probs=121.2

Q ss_pred             CeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccc
Q 002564          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  349 (907)
Q Consensus       270 ~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~  349 (907)
                      ....+..++++++++++..+....+++++......+++... .-....+.+.|..+......+..-|-+.-+|+-...  
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~--  140 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD--  140 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccc--
Confidence            34455667788888888888888888877665433444333 223445566666655555554444434333332111  


Q ss_pred             eeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEE
Q 002564          350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA  429 (907)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~  429 (907)
                                                                                 .     ....+.-+|-..++.
T Consensus       141 -----------------------------------------------------------~-----~~~~~~lGhvSml~d  156 (390)
T KOG3914|consen  141 -----------------------------------------------------------S-----GRCEPILGHVSMLLD  156 (390)
T ss_pred             -----------------------------------------------------------c-----cCcchhhhhhhhhhe
Confidence                                                                       0     111222356688999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCcee
Q 002564          430 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK  509 (907)
Q Consensus       430 ~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  509 (907)
                      ++++||+++++++..|+.|++-.......+..|.       .||..-|..+++-++ ..|+++|.|++|++||+.+|+.+
T Consensus       157 VavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-------lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  157 VAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-------LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             eeecCCCCEEEEecCCceEEEEecCcccchhhhc-------cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence            9999999999999999999999888877777776       489999999999865 45899999999999999999998


Q ss_pred             eeeecC
Q 002564          510 SRWEVG  515 (907)
Q Consensus       510 ~~~~~~  515 (907)
                      .++...
T Consensus       229 ~t~dl~  234 (390)
T KOG3914|consen  229 DTCDLS  234 (390)
T ss_pred             cccchh
Confidence            777654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=3.4e-08  Score=99.72  Aligned_cols=252  Identities=16%  Similarity=0.239  Sum_probs=177.5

Q ss_pred             cccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC-CCCEEEEEcee
Q 002564          267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQ  345 (907)
Q Consensus       267 h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~-dg~i~iwd~~~  345 (907)
                      |...|+.+... -..++++++.||.++.|.-... .....+..+..|...+.+++.+-++..+.|.+. |..++++|+.+
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCc-cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            77777776654 3459999999999999953321 223455666788899999999999999999777 99999999875


Q ss_pred             cccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCC
Q 002564          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (907)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~  425 (907)
                      -....-+...                                                  ++                +.
T Consensus        86 ~DminmiKL~--------------------------------------------------~l----------------Pg   99 (558)
T KOG0882|consen   86 FDMINMIKLV--------------------------------------------------DL----------------PG   99 (558)
T ss_pred             cchhhhcccc--------------------------------------------------cC----------------CC
Confidence            4322111000                                                  00                01


Q ss_pred             ceEEEEEcCCC---CEEEEE-eCCCcEEEEeCCCCccc-eeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEE
Q 002564          426 AVKACTISACG---NFAVLG-TAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (907)
Q Consensus       426 ~v~~~~~s~~g---~~l~~g-~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  500 (907)
                      .+..  +...|   ..++++ -.+|.+.++|-...... ..+.       .-|..+|..+.+.+.+..+++....|.|.-
T Consensus       100 ~a~w--v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk-------klH~sPV~~i~y~qa~Ds~vSiD~~gmVEy  170 (558)
T KOG0882|consen  100 FAEW--VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK-------KLHFSPVKKIRYNQAGDSAVSIDISGMVEY  170 (558)
T ss_pred             ceEE--ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec-------ccccCceEEEEeeccccceeeccccceeEe
Confidence            1110  11111   123333 35688999987665533 3332       479999999999999999999999999999


Q ss_pred             EECCC------Cceeeee----------ecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeec---------
Q 002564          501 WDFKG------RDLKSRW----------EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG---------  555 (907)
Q Consensus       501 wd~~~------~~~~~~~----------~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~---------  555 (907)
                      |....      .+....+          +......++.|+|++..+++-..|..|++++..++++++.+..         
T Consensus       171 Ws~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~  250 (558)
T KOG0882|consen  171 WSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQP  250 (558)
T ss_pred             ecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcc
Confidence            98773      1121122          2236788999999999999999999999999999877655321         


Q ss_pred             -----------------------CC-CCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEee
Q 002564          556 -----------------------HT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH  596 (907)
Q Consensus       556 -----------------------h~-~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~  596 (907)
                                             |. ..-+.+.|...|++|+.++.=| |+|.++.++++++.+-
T Consensus       251 ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  251 KSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             ccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence                                   21 1245678999999999998877 9999999998887764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.87  E-value=6.6e-08  Score=90.80  Aligned_cols=187  Identities=12%  Similarity=0.178  Sum_probs=116.0

Q ss_pred             EEEEEecCCcEEEEecCCCeEE------------EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEE-E
Q 002564          153 KVIVGSQEGSLQLWNISTKKKL------------YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-F  219 (907)
Q Consensus       153 ~l~~~s~dg~i~iwd~~~~~~~------------~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~-~  219 (907)
                      .++++..++.+...+.-++.+.            +.+..|..+-.+-+.+-.+..+++++.||.+.+++.+....+.. +
T Consensus        49 ~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i  128 (319)
T KOG4714|consen   49 ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRI  128 (319)
T ss_pred             eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhc
Confidence            4666666666665554444333            33333333333333444456799999999999999775322211 1


Q ss_pred             eecCCCCEEEEEEecCCCCEEEEEe-----CCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEE
Q 002564          220 THSMRGAVTALAFSSDGQPLLASGA-----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIK  293 (907)
Q Consensus       220 ~~~~~~~v~~l~fs~dg~~~l~sg~-----~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~  293 (907)
                      ...+.+ -.+.+....+. ++.++.     .-+..+.|+++..+....-. .....|.+++-+|..+ .+++|+.||.+.
T Consensus       129 ~~~~~~-~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~  205 (319)
T KOG4714|consen  129 PSIHSG-SASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQHLVCCGTDDGIVG  205 (319)
T ss_pred             cccccc-ccccceeeccc-EEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCcccccEEEEecCCCeEE
Confidence            111111 12222333344 333322     23456666665443332222 1233499999999665 667788899999


Q ss_pred             EEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEcee
Q 002564          294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ  345 (907)
Q Consensus       294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~  345 (907)
                      +||.+...   .....+..|..++..+.|+| ++..|++++.||.+.-||..+
T Consensus       206 l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  206 LWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEccccc---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            99988763   34556678999999999999 889999999999999999754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.86  E-value=5.5e-06  Score=84.52  Aligned_cols=183  Identities=14%  Similarity=0.057  Sum_probs=123.6

Q ss_pred             eEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccC-cCCcEEEEEEcCCCCEEEEEecC--------C
Q 002564          427 VKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA-HNGEVVGVACDSTNTLMISAGYH--------G  496 (907)
Q Consensus       427 v~~~~~s-~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~d--------g  496 (907)
                      ...+++. ++ ..++++... .+.++|..+++.........    .. .....+.++++++|++.++....        |
T Consensus        42 ~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~----~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g  115 (246)
T PF08450_consen   42 PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLPD----GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPG  115 (246)
T ss_dssp             EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEET----TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSE
T ss_pred             CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeeccC----CCcccCCCceEEEcCCCCEEEEecCCCcccccccc
Confidence            5666777 55 455555554 45566988886554443100    12 44678899999999977776543        5


Q ss_pred             eEEEEECCCCceeeeeecCcceeEEEEeeCCCEEE-EEeCCCeEEEEEcccce-------eEEEeecCCCCeeeEEECCC
Q 002564          497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA-TVADDLVIRLFDVVALR-------MVRKFEGHTDRITDFCFSED  568 (907)
Q Consensus       497 ~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la-~~~~dg~I~v~d~~~~~-------~~~~~~~h~~~I~~l~fspd  568 (907)
                      .|..++.. ++.......-...+.++|+|+++.|+ +-+..+.|..+++....       ....+....+..-.+++..+
T Consensus       116 ~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~  194 (246)
T PF08450_consen  116 SVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD  194 (246)
T ss_dssp             EEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT
T ss_pred             ceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC
Confidence            67777777 55555555556778999999999776 45667899999986321       12223333334778999999


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCceeeEeeeC-CceEEEEE-CCCCceEEEEE
Q 002564          569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSL-SPNMDVLATAH  617 (907)
Q Consensus       569 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~~v~~l~~-spdg~~lat~~  617 (907)
                      |++.++....+.|.++|.. |+++..+..+ ..+++++| -|+.+.|...+
T Consensus       195 G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  195 GNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             S-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            9988887788999999976 9999999887 56999999 46766665544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.84  E-value=1.5e-06  Score=94.85  Aligned_cols=164  Identities=12%  Similarity=0.075  Sum_probs=102.4

Q ss_pred             CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCE-EEEEec---CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCC
Q 002564          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDV-VAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG  236 (907)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~-la~g~~---dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg  236 (907)
                      ..|.+-|.. |...+.+.... .+....|+|+|+. ++..+.   +..|.++|+.+++...-.. . .+......|+|||
T Consensus       169 ~~l~~~d~d-g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~-~g~~~~~~~SPDG  244 (419)
T PRK04043        169 SNIVLADYT-LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-S-QGMLVVSDVSKDG  244 (419)
T ss_pred             ceEEEECCC-CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-C-CCcEEeeEECCCC
Confidence            356666664 33344344333 7888999999984 664433   3569999998887554433 2 4667788899999


Q ss_pred             CCEEEEEeCC--CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCC
Q 002564          237 QPLLASGASS--GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH  313 (907)
Q Consensus       237 ~~~l~sg~~d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h  313 (907)
                      +.++++.+.+  ..|.++|+.+++... +. .+........|+|||+.|+..+ ..+.-.+|.++..++..+.+.. .+.
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~  321 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTLTQ-IT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK  321 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcEEE-cc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC
Confidence            8566655544  568888988876443 33 2333344568999998776655 3455455555544443322221 122


Q ss_pred             CCCCeEEEEecCCCEEEEEeCC
Q 002564          314 SAPPLCIRFYANGRHILSAGQD  335 (907)
Q Consensus       314 ~~~v~~i~~~~~g~~l~s~~~d  335 (907)
                      .    ...|+|||+.++..+..
T Consensus       322 ~----~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        322 N----NSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             c----CceECCCCCEEEEEEcC
Confidence            1    24899999998876643

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.84  E-value=2.3e-05  Score=74.13  Aligned_cols=106  Identities=14%  Similarity=0.156  Sum_probs=80.6

Q ss_pred             eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCC
Q 002564          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG  181 (907)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~  181 (907)
                      -|++++.|+..|.+.+-+.++++.    +..+..-........+.+++  ..+.+|+.|++.+..|.++..+++..+..+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~----~w~f~~~~~vk~~a~~d~~~--glIycgshd~~~yalD~~~~~cVykskcgG  135 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQ----IWNFVILETVKVRAQCDFDG--GLIYCGSHDGNFYALDPKTYGCVYKSKCGG  135 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhh----eeeeeehhhhccceEEcCCC--ceEEEecCCCcEEEecccccceEEecccCC
Confidence            588899999999999999999987    55555555555666788888  789999999999999999999999988755


Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEEccCC
Q 002564          182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYD  213 (907)
Q Consensus       182 ~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~  213 (907)
                      +...+-+..|-...|..+...|.+.--+..++
T Consensus       136 ~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  136 GTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             ceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            55555566663334555555566665555544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.83  E-value=3e-06  Score=81.93  Aligned_cols=147  Identities=19%  Similarity=0.170  Sum_probs=97.4

Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEEccCCc--eEEEEe--ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeee
Q 002564          186 SCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFT--HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS  261 (907)
Q Consensus       186 ~l~~sp~~~~la~g~~dg~I~iwd~~~~~--~~~~~~--~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~  261 (907)
                      .++.+++|++||+-- |..|.|-..+.+-  .+.+..  ......=..++||||+. +||.+...|+|++||+.... +.
T Consensus         2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~-lf   78 (282)
T PF15492_consen    2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSE-LF   78 (282)
T ss_pred             ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEecccce-eE
Confidence            367788999888754 5677777655431  222222  22233557899999999 99999999999999987543 33


Q ss_pred             eeeccc------ccCeEEEEEecCC------CEEEEEcCCCcEEEEEccCCC-CCcceeEe---ccCCCCCCeEEEEecC
Q 002564          262 VIREAH------DNAIISLHFFANE------PVLMSASADNSIKMWIFDTTD-GDPRLLRF---RSGHSAPPLCIRFYAN  325 (907)
Q Consensus       262 ~~~~~h------~~~V~~l~~~~~~------~~l~s~~~d~~i~vw~~~~~~-~~~~~~~~---~~~h~~~v~~i~~~~~  325 (907)
                      .+..++      ...|.++.|.+-.      ..|++-..+|.++-|-+..++ ...+....   ...+...|.++.|+|.
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            444233      3567778786532      256666778888888765432 22222222   2235779999999999


Q ss_pred             CCEEEEEeCC
Q 002564          326 GRHILSAGQD  335 (907)
Q Consensus       326 g~~l~s~~~d  335 (907)
                      .+.|+.||..
T Consensus       159 h~LLlVgG~~  168 (282)
T PF15492_consen  159 HRLLLVGGCE  168 (282)
T ss_pred             CCEEEEeccC
Confidence            8888887754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.81  E-value=3.7e-06  Score=81.29  Aligned_cols=243  Identities=13%  Similarity=0.181  Sum_probs=128.4

Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEe---ccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccce
Q 002564          274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF---RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (907)
Q Consensus       274 l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~---~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~  350 (907)
                      ++.+++|+.||..- |..|.+-.....  -..++..   .+.....=..++|+||+..|+.+...|+|++||+.... ..
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Dd--f~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf   78 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDD--FSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LF   78 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCC--chheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eE
Confidence            45667787666653 666665532211  1112111   12222344789999999999999999999999986422 22


Q ss_pred             eechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEE
Q 002564          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (907)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (907)
                      .++...                     .+      ..+                                  ....|..+
T Consensus        79 ~I~p~~---------------------~~------~~d----------------------------------~~~Aiagl   97 (282)
T PF15492_consen   79 VIPPAM---------------------SF------PGD----------------------------------LSDAIAGL   97 (282)
T ss_pred             EcCccc---------------------cc------CCc----------------------------------cccceeee
Confidence            221100                     00      000                                  00122222


Q ss_pred             EEcCC------CCEEEEEeCCCcEEEEeCCCC-----ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCe--
Q 002564          431 TISAC------GNFAVLGTAGGWIERFNLQSG-----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD--  497 (907)
Q Consensus       431 ~~s~~------g~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~--  497 (907)
                      .|.+-      ...+++-+..|.++-|-+..+     +....+.     ....+...|.++.++|..++|+.||....  
T Consensus        98 ~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-----f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~  172 (282)
T PF15492_consen   98 IFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-----FSSHYPHGINSAVYHPKHRLLLVGGCEQNQD  172 (282)
T ss_pred             EeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-----ecccCCCceeEEEEcCCCCEEEEeccCCCCC
Confidence            22111      113444455666665554322     1122221     01234678999999999998888874321  


Q ss_pred             ---------EEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCC
Q 002564          498 ---------IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (907)
Q Consensus       498 ---------i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd  568 (907)
                               +.-|.+-++.+..         ....+.+.+.-....   +-.+|.+-+.+...........|..|..|||
T Consensus       173 ~~s~a~~~GLtaWRiL~~~Pyy---------k~v~~~~~~~~~~~~---~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd  240 (282)
T PF15492_consen  173 GMSKASSCGLTAWRILSDSPYY---------KQVTSSEDDITASSK---RRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD  240 (282)
T ss_pred             ccccccccCceEEEEcCCCCcE---------EEccccCcccccccc---ccceeeccceeeeeccccCCCceEEEEECCC
Confidence                     2223222221111         001111111111111   1123333333322222234577999999999


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCceeeEeeeC
Q 002564          569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD  598 (907)
Q Consensus       569 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~  598 (907)
                      |+.||+...+|.|.+|++++-++...+..+
T Consensus       241 g~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  241 GSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             CCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            999999999999999999998887776543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.81  E-value=3.5e-05  Score=72.97  Aligned_cols=135  Identities=17%  Similarity=0.223  Sum_probs=95.3

Q ss_pred             CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEE-EE
Q 002564          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVT-AL  230 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~-~l  230 (907)
                      .++++|+..+.+.--|..+|+.+.+-.- ..+|.+-+.- -|++++.|+..|.+.+.+.++|.....+..-  +.|. ..
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--~~vk~~a   99 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--ETVKVRA   99 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh--hhhccce
Confidence            6799999999999999999999876432 3444443333 5778999999999999999999988888764  2332 23


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcE
Q 002564          231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI  292 (907)
Q Consensus       231 ~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i  292 (907)
                      ...+++. ++..|+.|++....|..+..++...+ ...+...+-+..|....|..+...|.+
T Consensus       100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVyksk-cgG~~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen  100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK-CGGGTFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             EEcCCCc-eEEEecCCCcEEEecccccceEEecc-cCCceeccceecCCCceEEEEeccceE
Confidence            3456777 89999999999999999998888876 222222333444522234333334433

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.79  E-value=0.00077  Score=76.10  Aligned_cols=566  Identities=13%  Similarity=0.049  Sum_probs=298.8

Q ss_pred             CCcceeEEEcCCeEEEEEEeCCeEEEEEcCcc----eEEEec--CCCCcceEEEEEec-----CeEEEEEcC-----eEE
Q 002564           15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKL----NLVLVG--PQLPKKIRALASYR-----DYTFAAYGN-----HIA   78 (907)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~v~iwd~~~~----~~~~~~--~~~~~~I~~la~~~-----~~~~~a~g~-----~I~   78 (907)
                      ..++-|+.+.+...+.++|.-|.=++-.+.+.    ..+-..  -.--++|..|++-.     .+.++.+.+     .++
T Consensus       306 ~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLR  385 (1096)
T KOG1897|consen  306 TSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLR  385 (1096)
T ss_pred             cchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEE
Confidence            44566667778888888887333244444331    111111  12245787777543     356666633     278


Q ss_pred             EEeCCee---EEE--EcccccceEEEE--ee---CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCC
Q 002564           79 VVKRAHQ---VAT--WSRHSAKVNLLL--LF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD  148 (907)
Q Consensus        79 vw~~~~~---~~~--~~~h~~~V~~l~--~~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  148 (907)
                      +.+.+-.   ++.  +.| -..+..+.  ++   .++|+.+- -+.-++..+...-.    ......-.....+.+++.-
T Consensus       386 iiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf-~~eTrvl~i~~e~e----e~~~~gf~~~~~Tif~S~i  459 (1096)
T KOG1897|consen  386 IIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSF-ISETRVLNISEEVE----ETEDPGFSTDEQTIFCSTI  459 (1096)
T ss_pred             EEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEe-ccceEEEEEccceE----EeccccccccCceEEEEcc
Confidence            8775432   222  444 33344444  21   33555443 33334445443211    0111111122334444443


Q ss_pred             CCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEE
Q 002564          149 TYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVT  228 (907)
Q Consensus       149 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~  228 (907)
                      .+ +.|+-...+ .|++++-.  ..+..+.. .+.++....+.+...+++++.++.+...++..+.............|.
T Consensus       460 ~g-~~lvQvTs~-~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~eva  534 (1096)
T KOG1897|consen  460 NG-NQLVQVTSN-SIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVA  534 (1096)
T ss_pred             CC-ceEEEEecc-cEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeE
Confidence            33 344444333 47887743  34444444 455666666666667888887777777777765533333333356899


Q ss_pred             EEEEecC--CCC---EEEEEeCCCcEEEEE-CCCceeeeeeecc---cccCeEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 002564          229 ALAFSSD--GQP---LLASGASSGVISIWN-LEKRRLQSVIREA---HDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (907)
Q Consensus       229 ~l~fs~d--g~~---~l~sg~~dg~I~iwd-~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~  299 (907)
                      |+.++|-  ++.   ++++|.++..+.+.- +.+...+......   -...|.-..+-.|..+|.++..||.+..+.++.
T Consensus       535 CLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~  614 (1096)
T KOG1897|consen  535 CLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI  614 (1096)
T ss_pred             EEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence            9999975  343   888998776655443 3333333322111   123455556666678999999999999999988


Q ss_pred             CCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEe
Q 002564          300 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF  379 (907)
Q Consensus       300 ~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  379 (907)
                      .++...-.+...-...|+.--.|+..++.-+.+..|+-..+|.....-....++...                   +. .
T Consensus       615 ~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~ke-------------------v~-~  674 (1096)
T KOG1897|consen  615 NTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKE-------------------VN-H  674 (1096)
T ss_pred             ccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHH-------------------hh-h
Confidence            776444333333445677777777755555555556666666543222211111110                   00 0


Q ss_pred             eecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC--------------
Q 002564          380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG--------------  445 (907)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d--------------  445 (907)
                      .+......-.+.++.+..+.  +++..+..-+. .+....  .-......+++.+....+.+.+..              
T Consensus       675 ~c~f~s~a~~d~l~~~~~~~--l~i~tid~iqk-l~irtv--pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~  749 (1096)
T KOG1897|consen  675 MCPFNSDAYPDSLASANGGA--LTIGTIDEIQK-LHIRTV--PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEV  749 (1096)
T ss_pred             hcccccccCCceEEEecCCc--eEEEEecchhh-cceeee--cCCCChhheEecccceEEEEEecccccchhhcCCcceE
Confidence            11111112223344443332  22222221110 000000  111344555665544444433321              


Q ss_pred             CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC-CCEEEEEec----------CCeEEEEECCCCc---eeee
Q 002564          446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGY----------HGDIKVWDFKGRD---LKSR  511 (907)
Q Consensus       446 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~----------dg~i~iwd~~~~~---~~~~  511 (907)
                      ..++++|-++-+.........    ....-.+.+..|..| +.++++|..          .|.|.++.+....   .+..
T Consensus       750 s~l~vlD~nTf~vl~~hef~~----~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e  825 (1096)
T KOG1897|consen  750 SFLRVLDQNTFEVLSSHEFER----NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE  825 (1096)
T ss_pred             EEEEEecCCceeEEeeccccc----cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee
Confidence            135556655544433222100    011123455557766 677777652          4788888887632   2333


Q ss_pred             eecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEE--EcCCC
Q 002564          512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW--DVILA  589 (907)
Q Consensus       512 ~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vw--d~~~~  589 (907)
                      ....+.+.++..- +|+++|.-  +..|++|+..+.+.++.-..|..++..+...-.|..++.|..=+++.+-  +-..|
T Consensus       826 ~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg  902 (1096)
T KOG1897|consen  826 TVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEG  902 (1096)
T ss_pred             eeeccceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCC
Confidence            3444555555443 46666654  5789999999998888777889999999999999999999877766554  44455


Q ss_pred             ceeeEeee--CCceEEEEECCCCceEEEEEecCCeEEE
Q 002564          590 RQIDAIHV--DVSITALSLSPNMDVLATAHVDQNGVYL  625 (907)
Q Consensus       590 ~~~~~~~~--~~~v~~l~~spdg~~lat~~~d~~~i~l  625 (907)
                      ...-..+.  +..++++.+-.+..++. +..+++ +++
T Consensus       903 ~f~evArD~~p~Wmtaveil~~d~ylg-ae~~gN-lf~  938 (1096)
T KOG1897|consen  903 NFEEVARDYNPNWMTAVEILDDDTYLG-AENSGN-LFT  938 (1096)
T ss_pred             ceEEeehhhCccceeeEEEecCceEEe-eccccc-EEE
Confidence            55544443  44477787765555544 444553 444

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.79  E-value=7.2e-08  Score=90.56  Aligned_cols=166  Identities=19%  Similarity=0.295  Sum_probs=105.9

Q ss_pred             eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeE-EEEEcCCCCCEEEEEEcCCCCEEEEEe-----cCC
Q 002564          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK-LYEFKGWGSSISSCVSSPALDVVAVGC-----SDG  203 (907)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~h~~~I~~l~~sp~~~~la~g~-----~dg  203 (907)
                      ...+..+.+.......+-.+  +.++++..||.+.+.+.+.-.. .+....-...--+.+....++.+.++.     .-+
T Consensus        82 ~~~~a~~sep~p~~~~s~~~--t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d  159 (319)
T KOG4714|consen   82 FKVLAKNSEIDPNDACTMTD--NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD  159 (319)
T ss_pred             eeeeeccCCCCCcccccccC--CceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence            33444344333333334344  6799999999999998754111 111111111111122223344444332     123


Q ss_pred             eEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC-CCE
Q 002564          204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-EPV  282 (907)
Q Consensus       204 ~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~  282 (907)
                      ..+.|+++..+.+..-... ...|++++-+|..++++++|+.||.+.+||.+.......+..+|..++..+.|+|. +..
T Consensus       160 ~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~  238 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH  238 (319)
T ss_pred             ceeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence            4566666543333222222 24599999999888899999999999999999986666665699999999999995 458


Q ss_pred             EEEEcCCCcEEEEEcc
Q 002564          283 LMSASADNSIKMWIFD  298 (907)
Q Consensus       283 l~s~~~d~~i~vw~~~  298 (907)
                      |++++.||.+..||-.
T Consensus       239 Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  239 LFTCSEDGSLWHWDAS  254 (319)
T ss_pred             eeEecCCCcEEEEcCC
Confidence            9999999999999765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.78  E-value=1.8e-07  Score=89.94  Aligned_cols=161  Identities=16%  Similarity=0.234  Sum_probs=111.3

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEE---EeecC----CCCEEEEEEecCCCCEEEEEeCCCcEE
Q 002564          178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT---FTHSM----RGAVTALAFSSDGQPLLASGASSGVIS  250 (907)
Q Consensus       178 ~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~---~~~~~----~~~v~~l~fs~dg~~~l~sg~~dg~I~  250 (907)
                      ..|.-.|.++.|..|...++++. |-.|.+|++.--..-..   +..+.    ..-|++..|+|....++...+..|.|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            35667788899999988877754 57899999874332222   22221    236889999998766777778899999


Q ss_pred             EEECCCceee------eee--e-------cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCC-
Q 002564          251 IWNLEKRRLQ------SVI--R-------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-  314 (907)
Q Consensus       251 iwd~~~~~~~------~~~--~-------~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~-  314 (907)
                      +-|++...+.      ...  .       .+-...|..+.|+++|+++++-+. .+|++||.+....   ++.+..-|. 
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~---pikTi~~h~~  323 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN---PIKTIPMHCD  323 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC---CceeechHHH
Confidence            9999843211      000  0       123457889999999999888764 6899999987653   333332221 


Q ss_pred             -----------CCC---eEEEEecCCCEEEEEeCCCCEEEEEc
Q 002564          315 -----------APP---LCIRFYANGRHILSAGQDRAFRLFSV  343 (907)
Q Consensus       315 -----------~~v---~~i~~~~~g~~l~s~~~dg~i~iwd~  343 (907)
                                 ..|   ..+.|+.|.+.+++|+..+..-++-+
T Consensus       324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence                       122   45788889999999999888887764

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.75  E-value=3.6e-06  Score=92.02  Aligned_cols=344  Identities=10%  Similarity=0.026  Sum_probs=191.4

Q ss_pred             EEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEE
Q 002564          195 VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISL  274 (907)
Q Consensus       195 ~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l  274 (907)
                      .+.+|+..|.++|+-+.+++.++.+......+-+.--++...+.+| ..+..|....|.           ..|.-.+.--
T Consensus        68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l-~~~~~~~~~~~g-----------D~HHp~~s~t  135 (635)
T PRK02888         68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVL-GEGARGGKYLNG-----------DTHHPHMSFT  135 (635)
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHh-hccccCCcccCC-----------CcCCCccccc
Confidence            3568888999999999999998887654333333333333333223 111111111221           1122111111


Q ss_pred             EEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe--cCCCEEEEEeCCCCEEEEEceeccccee
Q 002564          275 HFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY--ANGRHILSAGQDRAFRLFSVIQDQQSRE  351 (907)
Q Consensus       275 ~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~--~~g~~l~s~~~dg~i~iwd~~~~~~~~~  351 (907)
                      .=..||++|+.-.. +..|-.-+++..... +++.  ......+..++|-  |+..+++.+++...=             
T Consensus       136 ~g~ydGr~~findk~n~Rvari~l~~~~~~-~i~~--iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~P-------------  199 (635)
T PRK02888        136 DGTYDGRYLFINDKANTRVARIRLDVMKCD-KITE--LPNVQGIHGLRPQKIPRTGYVFCNGEFRIP-------------  199 (635)
T ss_pred             CCccceeEEEEecCCCcceEEEECccEeec-eeEe--CCCccCccccCccccCCccEEEeCcccccc-------------
Confidence            11236777777664 344544444433221 2222  1233445555554  666777776542100             


Q ss_pred             echhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEE
Q 002564          352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT  431 (907)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~  431 (907)
                                           ++            .++..+.......+.+.+.|..+......+...     .....++
T Consensus       200 ---------------------lp------------nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-----gnpd~v~  241 (635)
T PRK02888        200 ---------------------LP------------NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-----GNLDNVD  241 (635)
T ss_pred             ---------------------cC------------CCCCEeecccceeEEEEEEECccceEEEEEEeC-----CCcccce
Confidence                                 00            000000011112233334444443332222221     3456778


Q ss_pred             EcCCCCEEEEEeCC---C-cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCC--
Q 002564          432 ISACGNFAVLGTAG---G-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG--  505 (907)
Q Consensus       432 ~s~~g~~l~~g~~d---g-~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--  505 (907)
                      ++++|+++++.+.+   | ++...+.........+..          ..  .-++.++|++...  .++.|.+.|..+  
T Consensus       242 ~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni----------~~--iea~vkdGK~~~V--~gn~V~VID~~t~~  307 (635)
T PRK02888        242 TDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI----------AR--IEEAVKAGKFKTI--GGSKVPVVDGRKAA  307 (635)
T ss_pred             ECCCCCEEEEeccCcccCcceeeeccccCceEEEEch----------HH--HHHhhhCCCEEEE--CCCEEEEEECCccc
Confidence            99999999888632   1 222222221111111100          00  0023456776665  367899999988  


Q ss_pred             ---CceeeeeecCcceeEEEEeeCCCEEEEEeC-CCeEEEEEccccee------------EEEeecCCCCeeeEEECCCC
Q 002564          506 ---RDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRM------------VRKFEGHTDRITDFCFSEDG  569 (907)
Q Consensus       506 ---~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~~~~~------------~~~~~~h~~~I~~l~fspdg  569 (907)
                         .+....+..+.....+.++|||+++++++. +.+|.|+|+.+.+.            +.+..--.+ -...+|.++|
T Consensus       308 ~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G  386 (635)
T PRK02888        308 NAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRG  386 (635)
T ss_pred             cCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCC
Confidence               577888888899999999999998887765 78999999988552            444443233 3457899999


Q ss_pred             cEEEEEeCCCcEEEEEcCC----------CceeeEeeeCCceEEEEE------CCCCceEEEEEec
Q 002564          570 KWLLSSGMDGSLRIWDVIL----------ARQIDAIHVDVSITALSL------SPNMDVLATAHVD  619 (907)
Q Consensus       570 ~~l~s~s~Dg~I~vwd~~~----------~~~~~~~~~~~~v~~l~~------spdg~~lat~~~d  619 (907)
                      ....|-..|..|..||+.+          ...++.+..+..+-.+.-      .|||+||++...-
T Consensus       387 ~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~  452 (635)
T PRK02888        387 NAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKF  452 (635)
T ss_pred             CEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcccc
Confidence            8888888999999999987          345566665554444444      7899999887543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=4.9e-07  Score=91.61  Aligned_cols=275  Identities=14%  Similarity=0.104  Sum_probs=180.4

Q ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEEccC--Cc-eEEEEeecCCCCEEEEEEecCCCCEEEEEeC-CCcEEEEECC
Q 002564          180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY--DE-ELVTFTHSMRGAVTALAFSSDGQPLLASGAS-SGVISIWNLE  255 (907)
Q Consensus       180 h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~--~~-~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~-dg~I~iwd~~  255 (907)
                      |...|+.+..+. .+++.+++.||.++.|.-..  +- .+..+.. |-+.|.+++.+-+|. ++.+.+. |..++++|++
T Consensus         8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFra-HL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRA-HLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHH-HHHHHHhhhccccce-eEeeccCcccceeEEEee
Confidence            666777766554 47999999999999997542  21 2222333 467899999999998 8888676 9999999999


Q ss_pred             CceeeeeeecccccCeEEEEEecCCC--EEEEE-cCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEE
Q 002564          256 KRRLQSVIREAHDNAIISLHFFANEP--VLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (907)
Q Consensus       256 ~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~  332 (907)
                      +-..+..++...-..-.++..+++..  .++.+ -.++.+.++|-..  ..........-|..+|.++.+.+-+..+++.
T Consensus        85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~--d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFG--DFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcC--CcCccceecccccCceEEEEeeccccceeec
Confidence            88776555522211122222233221  33333 3467788885433  2334455556799999999999999999999


Q ss_pred             eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeecee
Q 002564          333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL  412 (907)
Q Consensus       333 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~  412 (907)
                      ...|.|..|.....-+   +....                                              ..|.+..   
T Consensus       163 D~~gmVEyWs~e~~~q---fPr~~----------------------------------------------l~~~~K~---  190 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQ---FPRTN----------------------------------------------LNFELKH---  190 (558)
T ss_pred             cccceeEeecCCCccc---Ccccc----------------------------------------------ccccccc---
Confidence            9999999998763100   00000                                              0011110   


Q ss_pred             cceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccc------------------------
Q 002564          413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER------------------------  468 (907)
Q Consensus       413 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~------------------------  468 (907)
                       +..+-.........+++.++|+|..+..-..|..|++++..+|..++.+......                        
T Consensus       191 -eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaver  269 (558)
T KOG0882|consen  191 -ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVER  269 (558)
T ss_pred             -cchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHh
Confidence             0011111223467889999999999999999999999999999888776433221                        


Q ss_pred             cccCcC-CcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeee
Q 002564          469 SNYAHN-GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE  513 (907)
Q Consensus       469 ~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  513 (907)
                      ....|. ..-+.+.|+..+++|+-++.= -|++.++.++...+.+.
T Consensus       270 elek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  270 ELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILG  314 (558)
T ss_pred             hHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEec
Confidence            111222 234567888899999887763 47899999888777664

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.70  E-value=5.9e-06  Score=84.08  Aligned_cols=220  Identities=19%  Similarity=0.172  Sum_probs=140.1

Q ss_pred             CCcEEEEecCCCCccccceeeEecCCCcccEE-EEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEc
Q 002564          112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS  190 (907)
Q Consensus       112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~s  190 (907)
                      +|+|..||..+++.    +-+........... ...+++  +++++++.++.|+.||..+|+.+..+.. ...+.... .
T Consensus         2 ~g~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKE----LWSYDLGPGIGGPVATAVPDG--GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-V   73 (238)
T ss_dssp             TSEEEEEETTTTEE----EEEEECSSSCSSEEETEEEET--TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-E
T ss_pred             CCEEEEEECCCCCE----EEEEECCCCCCCccceEEEeC--CEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-e
Confidence            68899999988888    55555432222222 133344  6788889999999999999999998875 33222222 2


Q ss_pred             CCCCEEEEEecCCeEEEEEccCCceEEEE-eecC--CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc
Q 002564          191 PALDVVAVGCSDGKIHVHNVRYDEELVTF-THSM--RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH  267 (907)
Q Consensus       191 p~~~~la~g~~dg~I~iwd~~~~~~~~~~-~~~~--~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h  267 (907)
                      .++..+++++.++.+..+|..+|+.+... ....  ......+....++. .++++..++.|..+|+.+|+.+..... .
T Consensus        74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~-~  151 (238)
T PF13360_consen   74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPV-G  151 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEES-S
T ss_pred             ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeec-C
Confidence            34556777778899999999999999885 3221  11122333333355 677888899999999999999888773 3


Q ss_pred             ccC----------eEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC
Q 002564          268 DNA----------IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (907)
Q Consensus       268 ~~~----------V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~  337 (907)
                      ...          +.+-....++ .++.++.++.+..+|+.++.    .+-...  ...+.. ....++..++.++.++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~----~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~  223 (238)
T PF13360_consen  152 EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE----KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGR  223 (238)
T ss_dssp             TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE----EEEEEC--SS-ECE-CEECCCTEEEEEETTTE
T ss_pred             CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC----EEEEec--CCCccC-CceeeCCEEEEEeCCCE
Confidence            322          1222222344 67777777753333666542    222211  111111 13457778888889999


Q ss_pred             EEEEEceecccc
Q 002564          338 FRLFSVIQDQQS  349 (907)
Q Consensus       338 i~iwd~~~~~~~  349 (907)
                      +..||+.+++..
T Consensus       224 l~~~d~~tG~~~  235 (238)
T PF13360_consen  224 LYALDLKTGKVV  235 (238)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECCCCCEE
Confidence            999999887754

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.69  E-value=1.5e-05  Score=80.97  Aligned_cols=216  Identities=14%  Similarity=0.104  Sum_probs=138.4

Q ss_pred             CCeEEEEEcCcceEEEecCCC--CcceEEEEE-ecCeEEEEEc-CeEEEEeC--CeeEEEEcccccceEEEEeeCCEEEE
Q 002564           35 GKAFHIYNCAKLNLVLVGPQL--PKKIRALAS-YRDYTFAAYG-NHIAVVKR--AHQVATWSRHSAKVNLLLLFGEHILS  108 (907)
Q Consensus        35 ~~~v~iwd~~~~~~~~~~~~~--~~~I~~la~-~~~~~~~a~g-~~I~vw~~--~~~~~~~~~h~~~V~~l~~~g~~l~s  108 (907)
                      +++|..||..+|+.+......  .....+.++ .....|++.+ +.++.||.  ++.+.+..............++.++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v   81 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYV   81 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccc
Confidence            578999999999988876331  233333344 5556666644 44999994  66666644311111113567888888


Q ss_pred             EecCCcEEEEecCCCCccccceeeE-ecCC---CcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCC-
Q 002564          109 IDIDGNMFIWAFKGIEENLAPVGHV-KLDD---KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS-  183 (907)
Q Consensus       109 ~~~dg~v~vWd~~~~~~~~~~~~~~-~~~~---~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~-  183 (907)
                      ++.++.+..+|..+++.    +-+. ....   ...........+  +.++++..++.|..+|.++|+.+......... 
T Consensus        82 ~~~~~~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   82 GTSDGSLYALDAKTGKV----LWSIYLTSSPPAGVRSSSSPAVDG--DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             EETTSEEEEEETTTSCE----EEEEEE-SSCTCSTB--SEEEEET--TEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             ccceeeeEecccCCcce----eeeeccccccccccccccCceEec--CEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            88899999999999988    4442 2211   111222222234  67899988999999999999999988764422 


Q ss_pred             ---------EEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 002564          184 ---------ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (907)
Q Consensus       184 ---------I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~  254 (907)
                               +.+-....++ .+.++..+|.+.-+|+.+++.+.... .  ..+..+ ...++. .+++++.++.|..||+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~--~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I--SGIYSL-PSVDGG-TLYVTSSDGRLYALDL  229 (238)
T ss_dssp             S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S--S-ECEC-EECCCT-EEEEEETTTEEEEEET
T ss_pred             CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C--CCccCC-ceeeCC-EEEEEeCCCEEEEEEC
Confidence                     1222233344 77777777754444999999765333 2  223332 345566 6777778999999999


Q ss_pred             CCceeeee
Q 002564          255 EKRRLQSV  262 (907)
Q Consensus       255 ~~~~~~~~  262 (907)
                      .+++.+..
T Consensus       230 ~tG~~~W~  237 (238)
T PF13360_consen  230 KTGKVVWQ  237 (238)
T ss_dssp             TTTEEEEE
T ss_pred             CCCCEEeE
Confidence            99987643

...

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.68  E-value=9.3e-05  Score=75.14  Aligned_cols=293  Identities=12%  Similarity=0.103  Sum_probs=169.4

Q ss_pred             CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEEccCCceEEEEeecCCCC----
Q 002564          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVHNVRYDEELVTFTHSMRGA----  226 (907)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~----------~dg~I~iwd~~~~~~~~~~~~~~~~~----  226 (907)
                      ++++++|..+++.+-.+..  +-.-.+..+|+++.+++++          ..-.|.+||..+-.....+..+.+..    
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            4799999999998877764  3334477899999888753          23469999999998888777653211    


Q ss_pred             --EEEEEEecCCCCEEEEEe--CCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCC
Q 002564          227 --VTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG  302 (907)
Q Consensus       227 --v~~l~fs~dg~~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~  302 (907)
                        ...++++.||+ ++.+..  -...|.|-|+..++.+..+.  -.+ +..+--++ .+.+.+.|.||++....++....
T Consensus        95 ~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PG-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk  169 (342)
T PF06433_consen   95 PYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEID--TPG-CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGK  169 (342)
T ss_dssp             --GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEE--GTS-EEEEEEEE-TTEEEEEETTSCEEEEEETSTSS
T ss_pred             ccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeec--CCC-EEEEEecC-CCceEEEecCCceEEEEECCCCC
Confidence              23467888998 554443  45689999999999988886  222 22222222 24577888899999998886543


Q ss_pred             Cccee-EeccCCCCCC-eEEEEecCCCEEEEEeCCCCEEEEEceecccceeechh--hhhHHHhhccchhhhcccCceeE
Q 002564          303 DPRLL-RFRSGHSAPP-LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQR--HVAKRARKLKMKEEELKLKPVIA  378 (907)
Q Consensus       303 ~~~~~-~~~~~h~~~v-~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~  378 (907)
                      ..+.. ..+..-..++ ..-.+...+..++-.+.+|.|+-.++........-+-.  ....+..                
T Consensus       170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~----------------  233 (342)
T PF06433_consen  170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKAD----------------  233 (342)
T ss_dssp             EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHT----------------
T ss_pred             EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccccc----------------
Confidence            22111 1222222233 23345555556666788898888877654322111000  0000000                


Q ss_pred             eeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 002564          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS  458 (907)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~  458 (907)
                          ..|... -.+++.|...+.+++.- .....+        .|+.+                  .-.|.+||+.+++.
T Consensus       234 ----~WrPGG-~Q~~A~~~~~~rlyvLM-h~g~~g--------sHKdp------------------gteVWv~D~~t~kr  281 (342)
T PF06433_consen  234 ----GWRPGG-WQLIAYHAASGRLYVLM-HQGGEG--------SHKDP------------------GTEVWVYDLKTHKR  281 (342)
T ss_dssp             ----TEEE-S-SS-EEEETTTTEEEEEE-EE--TT---------TTS-------------------EEEEEEEETTTTEE
T ss_pred             ----CcCCcc-eeeeeeccccCeEEEEe-cCCCCC--------CccCC------------------ceEEEEEECCCCeE
Confidence                111111 22344444444444421 111110        01111                  11588899999999


Q ss_pred             ceeeeccccccccCcCCcEEEEEEcCCCC-EEEEE-ecCCeEEEEECCCCceeeeeecCcc
Q 002564          459 RGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISA-GYHGDIKVWDFKGRDLKSRWEVGCS  517 (907)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~  517 (907)
                      +..+.         -..++.+|+++.+.+ +|++. ..++.+.+||..+++.++.++.-+.
T Consensus       282 v~Ri~---------l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~  333 (342)
T PF06433_consen  282 VARIP---------LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE  333 (342)
T ss_dssp             EEEEE---------EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred             EEEEe---------CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence            88875         234577999998775 56554 4679999999999999988865443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.68  E-value=5.7e-05  Score=77.04  Aligned_cols=192  Identities=15%  Similarity=0.101  Sum_probs=123.9

Q ss_pred             EEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEc-CCCCEEEEEecCCeEEEEEccCCceEEEEee
Q 002564          143 CIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS-PALDVVAVGCSDGKIHVHNVRYDEELVTFTH  221 (907)
Q Consensus       143 ~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~s-p~~~~la~g~~dg~I~iwd~~~~~~~~~~~~  221 (907)
                      .+|.+... ..+++-...+.|..|+..+++... +....  ...+++. ++ ..++++...+ +.++|..+++.......
T Consensus         5 p~~d~~~g-~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    5 PVWDPRDG-RLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEETTTT-EEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             eEEECCCC-EEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            45666331 445555568899999988876644 32212  6777777 56 4555566544 56669988865444443


Q ss_pred             --c--CCCCEEEEEEecCCCCEEEEEeCC--------CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEE-EEcC
Q 002564          222 --S--MRGAVTALAFSSDGQPLLASGASS--------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASA  288 (907)
Q Consensus       222 --~--~~~~v~~l~fs~dg~~~l~sg~~d--------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~  288 (907)
                        .  .......+++.++|. +.++....        |.|..++.. ++......  .-...+.++|+|+++.|+ +-+.
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEETT
T ss_pred             cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeecccc
Confidence              1  245788999999999 66665533        568888877 55444443  456678999999998765 5566


Q ss_pred             CCcEEEEEccCCCCCc---ceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564          289 DNSIKMWIFDTTDGDP---RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       289 d~~i~vw~~~~~~~~~---~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (907)
                      .+.|..++++......   +.........+.+-.+++..+|+..++....+.|.+++..
T Consensus       155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            7778888876554311   2222222333347889999999888877788888888865

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.68  E-value=0.0016  Score=73.58  Aligned_cols=524  Identities=13%  Similarity=0.104  Sum_probs=261.4

Q ss_pred             CCeEEEEEEe---CCeEEEEEcCcceEEEecCCC--CcceEEEE--Ee---cCeEEEEEcCeEEEEeCCeeEEE--Eccc
Q 002564           25 GTENFVTVSV---GKAFHIYNCAKLNLVLVGPQL--PKKIRALA--SY---RDYTFAAYGNHIAVVKRAHQVAT--WSRH   92 (907)
Q Consensus        25 ~~~~~~~~~~---~~~v~iwd~~~~~~~~~~~~~--~~~I~~la--~~---~~~~~~a~g~~I~vw~~~~~~~~--~~~h   92 (907)
                      ++..+++++.   |++++|....=+=........  ...+-.+.  ++   +++.++..-+.-++...+.++..  ..+-
T Consensus       368 ~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf  447 (1096)
T KOG1897|consen  368 GQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDPGF  447 (1096)
T ss_pred             CCceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEeccceEEEEEccceEEeccccc
Confidence            4456666654   788998865432111111122  33343443  22   23566666666555554444333  2333


Q ss_pred             ccceEEEE---eeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecC
Q 002564           93 SAKVNLLL---LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS  169 (907)
Q Consensus        93 ~~~V~~l~---~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~  169 (907)
                      ......+.   ..|+.|+=.. ...|++.+-+.  .    ...+..+.+.....+. -+.  ..+++++.++.+...++.
T Consensus       448 ~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~~--~----~~~W~~p~~~ti~~~~-~n~--sqVvvA~~~~~l~y~~i~  517 (1096)
T KOG1897|consen  448 STDEQTIFCSTINGNQLVQVT-SNSIRLVSSAG--L----RSEWRPPGKITIGVVS-ANA--SQVVVAGGGLALFYLEIE  517 (1096)
T ss_pred             cccCceEEEEccCCceEEEEe-cccEEEEcchh--h----hhcccCCCceEEEEEe-ecc--eEEEEecCccEEEEEEee
Confidence            33333333   4677766665 55678877551  1    2233333333333332 222  357777777777777776


Q ss_pred             CCeEEEEE-cCCCCCEEEEEEcCCC------CEEEEEecCCeEEEEEcc-CCceEEEEeecC---CCCEEEEEEecCCCC
Q 002564          170 TKKKLYEF-KGWGSSISSCVSSPAL------DVVAVGCSDGKIHVHNVR-YDEELVTFTHSM---RGAVTALAFSSDGQP  238 (907)
Q Consensus       170 ~~~~~~~~-~~h~~~I~~l~~sp~~------~~la~g~~dg~I~iwd~~-~~~~~~~~~~~~---~~~v~~l~fs~dg~~  238 (907)
                      .+.....- +.....|.|+.++|-|      +++|+|..+..+.+.-.. ....+.......   ...|...+|-.|.. 
T Consensus       518 ~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~-  596 (1096)
T KOG1897|consen  518 DGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIH-  596 (1096)
T ss_pred             ccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccce-
Confidence            66522211 2336789999999853      289999887666554433 333333332221   23455666666666 


Q ss_pred             EEEEEeCCCcEEEEEC--CCceeeeeee-cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCC
Q 002564          239 LLASGASSGVISIWNL--EKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA  315 (907)
Q Consensus       239 ~l~sg~~dg~I~iwd~--~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~  315 (907)
                      +|.++..||.+.-|.+  .++..-..-+ .--..++.=-.|+..++.-+.+..|+-..+|..+.     ++..+.-. -.
T Consensus       597 yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-----kLv~spls-~k  670 (1096)
T KOG1897|consen  597 YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-----KLVYSPLS-LK  670 (1096)
T ss_pred             EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-----cEEEeccc-hH
Confidence            8888889999876654  4444332221 01234555555655554333344455555553321     11111000 01


Q ss_pred             CCeE-EEEec--CCCEEEEEeCCCCEEEEEceeccc--ceeechhhhhHHHhhccchhhhcccCc-eeEeeecccccccc
Q 002564          316 PPLC-IRFYA--NGRHILSAGQDRAFRLFSVIQDQQ--SRELSQRHVAKRARKLKMKEEELKLKP-VIAFDCAEIRERDW  389 (907)
Q Consensus       316 ~v~~-i~~~~--~g~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~  389 (907)
                      .+.. +.|+.  -+..++++.. +.+++.-+..-+.  .++++.+...++          +...+ -..+.....|....
T Consensus       671 ev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prr----------I~~q~~sl~~~v~s~r~e~~  739 (1096)
T KOG1897|consen  671 EVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLGESPRR----------ICYQESSLTFGVLSNRIESS  739 (1096)
T ss_pred             HhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCCCChhh----------eEecccceEEEEEecccccc
Confidence            1111 11221  1223444443 3455554432221  122221111111          11111 01111111111111


Q ss_pred             cceEEEeeCCceEEEEEeeeceecce-eeecCCCCCCceEEEEEcCC-CCEEEEEeC----------CCcEEEEeCCCCc
Q 002564          390 CNVVTCHMDTAQAYVWRLQNFVLGEH-ILRPCPENPTAVKACTISAC-GNFAVLGTA----------GGWIERFNLQSGI  457 (907)
Q Consensus       390 ~~~~~~~~~~~~v~~w~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~----------dg~i~i~d~~~~~  457 (907)
                      .....-...-..++++|..+...-.. .+.. ...-..+.++.+..| +.++++|+.          .|.|.+|....+.
T Consensus       740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~-~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~  818 (1096)
T KOG1897|consen  740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFER-NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN  818 (1096)
T ss_pred             hhhcCCcceEEEEEEecCCceeEEeeccccc-cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC
Confidence            11000111123455555554433111 1110 011133455567777 788899873          5889999888744


Q ss_pred             cceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceee-eeecCcceeEEEEeeCCCEEEEEeCC
Q 002564          458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVNGLLATVADD  536 (907)
Q Consensus       458 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~i~~~~~s~~~~~la~~~~d  536 (907)
                      .+.....      ..-.+.+.++..- +|+++|.  -...|++|++.+.+.++ .-....++..+...-.|..+++|.--
T Consensus       819 ~L~~v~e------~~v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm  889 (1096)
T KOG1897|consen  819 SLELVAE------TVVKGAVYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLM  889 (1096)
T ss_pred             ceeeeee------eeeccceeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeecc
Confidence            4433320      1223444444432 4566654  44689999998884443 34555889999999999999999887


Q ss_pred             CeEEEEEccc--ceeEEEee-cCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcC
Q 002564          537 LVIRLFDVVA--LRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI  587 (907)
Q Consensus       537 g~I~v~d~~~--~~~~~~~~-~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~  587 (907)
                      +++.+.-...  |.....-+ -+....+++.+-.+..++. +..+|.+.+-..+
T Consensus       890 ~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylg-ae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  890 RSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLG-AENSGNLFTVRKD  942 (1096)
T ss_pred             ceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEe-ecccccEEEEEec
Confidence            7777655443  32332222 3567788888776655554 5567777776544

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.64  E-value=4.5e-06  Score=91.31  Aligned_cols=134  Identities=19%  Similarity=0.250  Sum_probs=97.2

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCC----C-ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 002564          432 ISACGNFAVLGTAGGWIERFNLQS----G-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG  505 (907)
Q Consensus       432 ~s~~g~~l~~g~~dg~i~i~d~~~----~-~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~  505 (907)
                      +.++|++..+  .++.|.++|..+    + .....+         .-.....++.++|||+++++++ .+.++.|.|+.+
T Consensus       284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI---------PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k  352 (635)
T PRK02888        284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV---------PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE---------ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence            4557887776  367899999887    3 333333         3455677899999999887766 689999999987


Q ss_pred             Cc------------eeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEccc----------ceeEEEeecCCCCee--
Q 002564          506 RD------------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA----------LRMVRKFEGHTDRIT--  561 (907)
Q Consensus       506 ~~------------~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~----------~~~~~~~~~h~~~I~--  561 (907)
                      .+            ...+.+........+|.++|+...+-.-|..|..||+.+          ...+.++.-|-.+..  
T Consensus       353 ~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~  432 (635)
T PRK02888        353 LDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNH  432 (635)
T ss_pred             hhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceee
Confidence            55            345555556667889999998888888899999999987          345665654543322  


Q ss_pred             ---eEEECCCCcEEEEEe
Q 002564          562 ---DFCFSEDGKWLLSSG  576 (907)
Q Consensus       562 ---~l~fspdg~~l~s~s  576 (907)
                         .=.-.|||+||++..
T Consensus       433 ~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        433 ASMGETKEADGKWLVSLN  450 (635)
T ss_pred             ecCCCcCCCCCCEEEEcc
Confidence               223478999999874

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=1.1e-06  Score=95.92  Aligned_cols=180  Identities=14%  Similarity=0.162  Sum_probs=137.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  504 (907)
                      ..++|++++  +.+++.|+.+|.|++++.+... ...+         .|...      +-+|.+++||+.||+|.|-.+-
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~---------~~s~~------~~~Gey~asCS~DGkv~I~sl~  101 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF---------DHSSS------ILEGEYVASCSDDGKVVIGSLF  101 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccc---------ccccc------ccCCceEEEecCCCcEEEeecc
Confidence            345555554  6899999999999999987654 2222         34333      6689999999999999999999


Q ss_pred             CCceeeeeecCcceeEEEEeeC-----CCEEEEEeCCCeEEEEEccc--ceeEEEeecCCCCeeeEEECCCCcEEEEEeC
Q 002564          505 GRDLKSRWEVGCSLVKIVYHRV-----NGLLATVADDLVIRLFDVVA--LRMVRKFEGHTDRITDFCFSEDGKWLLSSGM  577 (907)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~-----~~~la~~~~dg~I~v~d~~~--~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~  577 (907)
                      +.+....+..+.++.+++++|+     .+.+++|+.-| +.++.-.=  .+.-..+..-.++|.++.|  .|.++|-++.
T Consensus       102 ~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand  178 (846)
T KOG2066|consen  102 TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAND  178 (846)
T ss_pred             CCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecC
Confidence            9999999999999999999998     56888898888 76664321  1111145556789999999  5779999988


Q ss_pred             CCcEEEEEcCCCceeeEeeeCCc-------eEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          578 DGSLRIWDVILARQIDAIHVDVS-------ITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       578 Dg~I~vwd~~~~~~~~~~~~~~~-------v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                      +| |+|||+.+++.+..+..+..       ...+.|.++. .|+.|=.|  +|.|..++
T Consensus       179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d--~v~i~~I~  233 (846)
T KOG2066|consen  179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD--SVKICSIK  233 (846)
T ss_pred             CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC--eEEEEEEe
Confidence            88 99999999998877765432       5678888764 45555555  48888887

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.63  E-value=1.2e-07  Score=92.68  Aligned_cols=154  Identities=19%  Similarity=0.279  Sum_probs=122.6

Q ss_pred             CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC-----ceeeeeecCcce
Q 002564          444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCSL  518 (907)
Q Consensus       444 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~i  518 (907)
                      .+-.|-+-|+.+|.... |         ...+.|.++.|...+.++..|...|.|...|+..+     .+...+-+++.|
T Consensus       232 ~sqqv~L~nvetg~~qs-f---------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv  301 (425)
T KOG2695|consen  232 LSQQVLLTNVETGHQQS-F---------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV  301 (425)
T ss_pred             ccceeEEEEeecccccc-c---------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence            34456677777664322 2         35677888999988899999999999999999854     567778888999


Q ss_pred             eEEEEee-CCCEEEEEeCCCeEEEEEccccee---EEEeecCCCCeeeE--EECCCCcEEEEEeCCCcEEEEEcCCCcee
Q 002564          519 VKIVYHR-VNGLLATVADDLVIRLFDVVALRM---VRKFEGHTDRITDF--CFSEDGKWLLSSGMDGSLRIWDVILARQI  592 (907)
Q Consensus       519 ~~~~~s~-~~~~la~~~~dg~I~v~d~~~~~~---~~~~~~h~~~I~~l--~fspdg~~l~s~s~Dg~I~vwd~~~~~~~  592 (907)
                      +++..-. ++++|.+.+.+|.|.+||.+--++   +.++.||.+.-.-+  -..+....+++++.|...|||.+.+|.++
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL  381 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence            9988777 788999999999999999987777   99999997654443  34566778999999999999999999999


Q ss_pred             eEeeeCCc-----eEEEEEC
Q 002564          593 DAIHVDVS-----ITALSLS  607 (907)
Q Consensus       593 ~~~~~~~~-----v~~l~~s  607 (907)
                      .++..+..     +.+++|.
T Consensus       382 ~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  382 CTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             eccCCCCccccccccceehh
Confidence            99887554     4555553

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.62  E-value=1.6e-05  Score=80.62  Aligned_cols=271  Identities=13%  Similarity=0.184  Sum_probs=153.6

Q ss_pred             CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc----------CCCcEEEEEccCCCCCcceeEeccC----
Q 002564          247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDPRLLRFRSG----  312 (907)
Q Consensus       247 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~d~~i~vw~~~~~~~~~~~~~~~~~----  312 (907)
                      +.+.++|..+++.+..+..+..   -.+..+|+++.+++++          ..-.|.+||..+-.....+.. ..+    
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i-P~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI-PPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE-TTS-B--
T ss_pred             ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec-CCcchhe
Confidence            4799999999999999884443   3466799999888754          234688998766532221111 111    


Q ss_pred             CCCCCeEEEEecCCCEEEEE--eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccccccc
Q 002564          313 HSAPPLCIRFYANGRHILSA--GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (907)
Q Consensus       313 h~~~v~~i~~~~~g~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  390 (907)
                      ........+++.||++++..  +--.+|.+.|+...+...++..+                                   
T Consensus        93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-----------------------------------  137 (342)
T PF06433_consen   93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-----------------------------------  137 (342)
T ss_dssp             BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-----------------------------------
T ss_pred             ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-----------------------------------
Confidence            11233456677777777654  33445666776665555444321                                   


Q ss_pred             ceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEeCC-CCccceeeeccccc
Q 002564          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSER  468 (907)
Q Consensus       391 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~~~~  468 (907)
                                                        +   |..+-|. .+-+..-|.||.+..+.+. .|+......    .
T Consensus       138 ----------------------------------G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t----~  176 (342)
T PF06433_consen  138 ----------------------------------G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST----K  176 (342)
T ss_dssp             ----------------------------------S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE----E
T ss_pred             ----------------------------------C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec----c
Confidence                                              0   1111111 1234455566666666665 333321111    0


Q ss_pred             cccCcCCc-EEEEEEcCCCCEEEEEecCCeEEEEECCCCceee--eeec-----------CcceeEEEEeeCCCEEEEEe
Q 002564          469 SNYAHNGE-VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEV-----------GCSLVKIVYHRVNGLLATVA  534 (907)
Q Consensus       469 ~~~~h~~~-v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~-----------~~~i~~~~~s~~~~~la~~~  534 (907)
                      .+..-..+ ...-+++..+..++-.+.+|.|+--|+.......  .+..           ++.-.-+++++..+.|.+..
T Consensus       177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence            01111122 2233344445555557778888888877654321  2211           14455688888776666543


Q ss_pred             CC----------CeEEEEEcccceeEEEeecCCCCeeeEEECCCCc-EEEEE-eCCCcEEEEEcCCCceeeEeeeC
Q 002564          535 DD----------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSS-GMDGSLRIWDVILARQIDAIHVD  598 (907)
Q Consensus       535 ~d----------g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~-~l~s~-s~Dg~I~vwd~~~~~~~~~~~~~  598 (907)
                      ..          ..|.++|+.+++.++++.. ..++.+|+.+.|.+ +|++. ..++.+.+||..+|+++..+..-
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            21          1688999999999999873 24688999999876 56544 46899999999999999988753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=1.1e-06  Score=95.51  Aligned_cols=111  Identities=21%  Similarity=0.325  Sum_probs=90.0

Q ss_pred             EEEEEcCCCCEEEEEec----CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceee
Q 002564          185 SSCVSSPALDVVAVGCS----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ  260 (907)
Q Consensus       185 ~~l~~sp~~~~la~g~~----dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~  260 (907)
                      +-..|+|...++|+++-    .|.|.||- ++|++-.....+  -.+++++|+|..- +|+.|-.-|.+.+|...+.+..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--VHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc--eehhhhccChHHH-HHhhccccceeEEEecCCceee
Confidence            44578999999988863    48898885 567755444332  4578899999876 8999999999999998777665


Q ss_pred             eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (907)
Q Consensus       261 ~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (907)
                      .... .|..+|..+.|+++|..++++..-|.+.+|.++..
T Consensus        95 tv~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   95 TVVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             eecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence            5555 89999999999999999999999999999998754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.59  E-value=1.4e-07  Score=64.29  Aligned_cols=39  Identities=41%  Similarity=0.868  Sum_probs=37.2

Q ss_pred             ceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564          547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (907)
Q Consensus       547 ~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd  585 (907)
                      +++++++.+|.+.|++++|+|++++|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            468899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.59  E-value=2.1e-05  Score=78.78  Aligned_cols=197  Identities=12%  Similarity=0.148  Sum_probs=143.7

Q ss_pred             CceEEEEEcC-CCCEEEEEeCCC-cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-----cCCe
Q 002564          425 TAVKACTISA-CGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-----YHGD  497 (907)
Q Consensus       425 ~~v~~~~~s~-~g~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-----~dg~  497 (907)
                      .....++.+| .+..++++-.-| ...+||..++.....+.....+.+.+|      -+|++||++|++.-     ..|.
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~   78 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGV   78 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEE
Confidence            4556778888 566777777777 567899999999888876555555666      47999999999874     4588


Q ss_pred             EEEEECC-CCceeeeeecC-cceeEEEEeeCCCEEEEEeC------------------CCeEEEEEcccceeEEE--e--
Q 002564          498 IKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD------------------DLVIRLFDVVALRMVRK--F--  553 (907)
Q Consensus       498 i~iwd~~-~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~------------------dg~I~v~d~~~~~~~~~--~--  553 (907)
                      |-|||.. +-+.+.++..+ -....+.+.|||+.|+++..                  +-++...|..+|+++.+  +  
T Consensus        79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~  158 (305)
T PF07433_consen   79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP  158 (305)
T ss_pred             EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence            9999999 55666666554 45677889999988887632                  33566778888988777  4  


Q ss_pred             ecCCCCeeeEEECCCCcEEEEEeCCC-------cEEEEEcCCCceeeEeee--------CCceEEEEECCCCceEEEEEe
Q 002564          554 EGHTDRITDFCFSEDGKWLLSSGMDG-------SLRIWDVILARQIDAIHV--------DVSITALSLSPNMDVLATAHV  618 (907)
Q Consensus       554 ~~h~~~I~~l~fspdg~~l~s~s~Dg-------~I~vwd~~~~~~~~~~~~--------~~~v~~l~~spdg~~lat~~~  618 (907)
                      .-|...|..+++.++|..++..-..|       -|-+++.  ++.+..+..        ..-+-+++++++|.++++++-
T Consensus       159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP  236 (305)
T PF07433_consen  159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP  236 (305)
T ss_pred             cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence            33778899999999997666554333       2334432  333333332        344899999999999999888


Q ss_pred             cCCeEEEeecc
Q 002564          619 DQNGVYLWVNR  629 (907)
Q Consensus       619 d~~~i~lW~~~  629 (907)
                      -++.+.+||..
T Consensus       237 rGg~~~~~d~~  247 (305)
T PF07433_consen  237 RGGRVAVWDAA  247 (305)
T ss_pred             CCCEEEEEECC
Confidence            88789999753

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=4e-06  Score=84.10  Aligned_cols=165  Identities=11%  Similarity=0.134  Sum_probs=116.4

Q ss_pred             EEEEecCCCeEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (907)
Q Consensus       163 i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~  241 (907)
                      +++.+..+.+....+.+|...|..++|||..+ ++..++.+..|.|.|+++...+..+..+  ..+.+++|.-|..+++.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcceeE
Confidence            66666666666677788899999999999877 7888999999999999999999988876  78999999999988999


Q ss_pred             EEeCCCcEEEEECCCceee-eeee-cccccCeEEEEEec------CCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCC
Q 002564          242 SGASSGVISIWNLEKRRLQ-SVIR-EAHDNAIISLHFFA------NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH  313 (907)
Q Consensus       242 sg~~dg~I~iwd~~~~~~~-~~~~-~~h~~~V~~l~~~~------~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h  313 (907)
                      .|..+|.|.|||++..+-. ..+. .-...+|..++..+      .+.+|+.+..  .+..|.+....+.+.++... +.
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlel-e~  329 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLEL-EP  329 (463)
T ss_pred             EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCccccc-CC
Confidence            9999999999999865322 1221 01234555554433      3445555543  35677765554443333222 34


Q ss_pred             CCCCeEEEEecCCCEEEEE
Q 002564          314 SAPPLCIRFYANGRHILSA  332 (907)
Q Consensus       314 ~~~v~~i~~~~~g~~l~s~  332 (907)
                      .+...++++++-.++++..
T Consensus       330 pG~cismqy~~~snh~l~t  348 (463)
T KOG1645|consen  330 PGICISMQYHGVSNHLLLT  348 (463)
T ss_pred             CcceeeeeecCccceEEEE
Confidence            5666777777754555443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.49  E-value=5.2e-06  Score=90.59  Aligned_cols=114  Identities=16%  Similarity=0.161  Sum_probs=86.9

Q ss_pred             CCEEEEEEecCCCCEEEEEe----CCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564          225 GAVTALAFSSDGQPLLASGA----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (907)
Q Consensus       225 ~~v~~l~fs~dg~~~l~sg~----~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (907)
                      +.-+-.+|+|..+ ++++++    ..|.|.||- ++|++.....  ..-.+++++|+|..-.|+.|-.-|.+.+|.-...
T Consensus        16 avsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~   91 (1416)
T KOG3617|consen   16 AVSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT   91 (1416)
T ss_pred             ccccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCc
Confidence            3445567888877 777776    458898885 5666544433  2334567999999988899888899999965443


Q ss_pred             CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceec
Q 002564          301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD  346 (907)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~  346 (907)
                          ..-.....|..++..+.|+++|..++++..-|.+.+|....-
T Consensus        92 ----e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   92 ----ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             ----eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence                233444579999999999999999999999999999987643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.49  E-value=0.0017  Score=75.20  Aligned_cols=275  Identities=12%  Similarity=0.108  Sum_probs=166.1

Q ss_pred             CCCcceEEEEEecCeEEEEEcCe-----EEEEe---CCe---eEEEEc--ccccceEEEEe--eCCEEEEEecCCcEEEE
Q 002564           54 QLPKKIRALASYRDYTFAAYGNH-----IAVVK---RAH---QVATWS--RHSAKVNLLLL--FGEHILSIDIDGNMFIW  118 (907)
Q Consensus        54 ~~~~~I~~la~~~~~~~~a~g~~-----I~vw~---~~~---~~~~~~--~h~~~V~~l~~--~g~~l~s~~~dg~v~vW  118 (907)
                      .+++.-.+...+|...+++++..     +..+.   .++   ....+.  .-.+.|.++.+  ++..++.+..+|.|.+-
T Consensus        16 ~~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilv   95 (1265)
T KOG1920|consen   16 AGPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILV   95 (1265)
T ss_pred             CCCCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEE
Confidence            34444466677788888888733     22232   122   111121  22357888886  68889999999999988


Q ss_pred             ecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEec----CC-------------------CeEEE
Q 002564          119 AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI----ST-------------------KKKLY  175 (907)
Q Consensus       119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~----~~-------------------~~~~~  175 (907)
                      |.++...     .....-...+..+.|+|+.  ..++..+..+++.+-.-    -.                   |+.-.
T Consensus        96 d~et~~~-----eivg~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeT  168 (1265)
T KOG1920|consen   96 DPETLEL-----EIVGNVDNGISAASWSPDE--ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKET  168 (1265)
T ss_pred             cccccce-----eeeeeccCceEEEeecCCC--cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccce
Confidence            8777654     1222234556777899999  78988888887776532    11                   11111


Q ss_pred             EEcCC---------------------CCCEEEEEEcCCCCEEEEE-----ecCCeEEEEEccCCceEEEEeecCCCCEEE
Q 002564          176 EFKGW---------------------GSSISSCVSSPALDVVAVG-----CSDGKIHVHNVRYDEELVTFTHSMRGAVTA  229 (907)
Q Consensus       176 ~~~~h---------------------~~~I~~l~~sp~~~~la~g-----~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~  229 (907)
                      .|.|.                     .+.=+++.|--||+++|+.     .....|++||-+ |. +........+.-.+
T Consensus       169 qfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~  246 (1265)
T KOG1920|consen  169 QFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHS  246 (1265)
T ss_pred             eeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccc
Confidence            22211                     1122458899999999983     233789999976 33 33333333455679


Q ss_pred             EEEecCCCCEEEEEe---CCCcEEEEECCCc---eeeeeeecccccCeEEEEEecCCCEEEE---EcCCCcEEEEEccCC
Q 002564          230 LAFSSDGQPLLASGA---SSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFANEPVLMS---ASADNSIKMWIFDTT  300 (907)
Q Consensus       230 l~fs~dg~~~l~sg~---~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s---~~~d~~i~vw~~~~~  300 (907)
                      ++|-|.|. ++++-.   +++.|.+|.-+.-   ...-... .....|..++|+.++..|++   ......|++|-+  +
T Consensus       247 LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~--~  322 (1265)
T KOG1920|consen  247 LSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT--G  322 (1265)
T ss_pred             eeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecCCCCceeeeecccccceEEEEEe--c
Confidence            99999998 666543   5668999984322   2222222 23345999999999998887   444455999954  3


Q ss_pred             CCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEc
Q 002564          301 DGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV  343 (907)
Q Consensus       301 ~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~  343 (907)
                      +..+-+...+.-.....  +.|+| ....+..-..+|...++++
T Consensus       323 NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  323 NYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             CeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence            33333333333222222  78888 3334444446777666654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.49  E-value=1.4e-07  Score=102.78  Aligned_cols=171  Identities=18%  Similarity=0.168  Sum_probs=120.7

Q ss_pred             CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCC-cE
Q 002564          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG-VI  249 (907)
Q Consensus       171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg-~I  249 (907)
                      .+...+|..|....+|++|+-+.+.|++|+..|.|+++++.+|........| ...|+-+.=+.||...|.+++... ..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCcceeeeeccccCchH
Confidence            3455677888999999999999999999999999999999999998888876 889999999999995555444443 67


Q ss_pred             EEEECCC-ceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCE
Q 002564          250 SIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (907)
Q Consensus       250 ~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~  328 (907)
                      .+|++.+ +...+++.     .-.++.|+.....-+.|+......+||+.+...-...+.-..+....-++..|+|+..+
T Consensus      1170 aLW~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HHhccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            8999864 33344443     34678888765444444444568899988765322222222222333477889998877


Q ss_pred             EEEEeCCCCEEEEEceecccceee
Q 002564          329 ILSAGQDRAFRLFSVIQDQQSREL  352 (907)
Q Consensus       329 l~s~~~dg~i~iwd~~~~~~~~~~  352 (907)
                      ++-   ||  .+||++..+.+..+
T Consensus      1245 Iln---dG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred             Eee---Cc--eeeeeccHHHHhhh
Confidence            764   44  57998766544443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.49  E-value=9.8e-05  Score=74.13  Aligned_cols=221  Identities=14%  Similarity=0.182  Sum_probs=144.0

Q ss_pred             CcceEEEEEec-CeEEEEEcC----eEEEEeC--CeeEEEEcccccce----EEEEeeCCEEEEEec-----CCcEEEEe
Q 002564           56 PKKIRALASYR-DYTFAAYGN----HIAVVKR--AHQVATWSRHSAKV----NLLLLFGEHILSIDI-----DGNMFIWA  119 (907)
Q Consensus        56 ~~~I~~la~~~-~~~~~a~g~----~I~vw~~--~~~~~~~~~h~~~V----~~l~~~g~~l~s~~~-----dg~v~vWd  119 (907)
                      +..-..++.+| ....++.+.    ...+||.  ++....+....+.-    -.+.+||++|++.-.     .|.|-|||
T Consensus         4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            44556777888 455566643    3777773  33333333222222    234468999999754     46799999


Q ss_pred             cC-CCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEe------------------cCCcEEEEecCCCeEEEE--E-
Q 002564          120 FK-GIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS------------------QEGSLQLWNISTKKKLYE--F-  177 (907)
Q Consensus       120 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~--~-  177 (907)
                      .. +...    +.++..+.-..--+.+.|++  ..|+++.                  .+.++...|..+|+.+..  + 
T Consensus        84 ~~~~~~r----i~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp  157 (305)
T PF07433_consen   84 AARGYRR----IGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP  157 (305)
T ss_pred             CcCCcEE----EeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC
Confidence            98 3333    56666655555566678887  5666652                  234566778889988776  4 


Q ss_pred             -cCCCCCEEEEEEcCCCCEEEEEecCCe-------EEEEEccCCceEEEEeec------CCCCEEEEEEecCCCCEEEEE
Q 002564          178 -KGWGSSISSCVSSPALDVVAVGCSDGK-------IHVHNVRYDEELVTFTHS------MRGAVTALAFSSDGQPLLASG  243 (907)
Q Consensus       178 -~~h~~~I~~l~~sp~~~~la~g~~dg~-------I~iwd~~~~~~~~~~~~~------~~~~v~~l~fs~dg~~~l~sg  243 (907)
                       .-|.-.|.-+++.++|..++..-..|.       |-+++  .++.+..+...      ..+.+-++++++++..+.+|+
T Consensus       158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts  235 (305)
T PF07433_consen  158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS  235 (305)
T ss_pred             ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence             347889999999999976665543332       33333  33333333321      246899999999998455666


Q ss_pred             eCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC
Q 002564          244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA  288 (907)
Q Consensus       244 ~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~  288 (907)
                      -..|.+.+||..+++++....   -..+..++-.+++ ++++.+.
T Consensus       236 PrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  236 PRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             CCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCCC
Confidence            688999999999999988765   3456778777777 5666554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.45  E-value=0.00055  Score=77.06  Aligned_cols=175  Identities=17%  Similarity=0.146  Sum_probs=109.7

Q ss_pred             EEEcCCCCEEEEEeCCC------------------cEEEEeCCCCccceeeecccccc--ccCcCCcE-EEEEEcCCCC-
Q 002564          430 CTISACGNFAVLGTAGG------------------WIERFNLQSGISRGSYLDMSERS--NYAHNGEV-VGVACDSTNT-  487 (907)
Q Consensus       430 ~~~s~~g~~l~~g~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~--~~~h~~~v-~~l~~s~~~~-  487 (907)
                      .++.+.+..+++++.++                  .|.-+|..+|+.+..+.......  ......++ ..+. .-++. 
T Consensus       222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~  300 (488)
T cd00216         222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKP  300 (488)
T ss_pred             eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCe
Confidence            45666677888887665                  79999999999998875211100  00111111 1111 11232 


Q ss_pred             --EEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEE------------------eCCCeEEEEEcccc
Q 002564          488 --LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV------------------ADDLVIRLFDVVAL  547 (907)
Q Consensus       488 --~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~------------------~~dg~I~v~d~~~~  547 (907)
                        .++.++.+|.+...|..+|+.+-.....  ...++.+|  +.+.++                  ..+|.+.-+|..++
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG  376 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG  376 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence              5777888999999999999988776542  11223333  333332                  23578888999999


Q ss_pred             eeEEEeecCC--------CCe--eeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEE--EEECCCCc
Q 002564          548 RMVRKFEGHT--------DRI--TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD  611 (907)
Q Consensus       548 ~~~~~~~~h~--------~~I--~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~--l~~spdg~  611 (907)
                      +.+.+.....        .+.  ..+..  .+..|+.++.||.|+.+|..+|+.+..++...++.+  +.+..+|+
T Consensus       377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~  450 (488)
T cd00216         377 KVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK  450 (488)
T ss_pred             cEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence            8877765321        111  11222  456888889999999999999999998887665332  33344554

The alignment model contains an 8-bladed beta-propeller.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.44  E-value=7.3e-07  Score=60.69  Aligned_cols=39  Identities=41%  Similarity=0.536  Sum_probs=37.3

Q ss_pred             CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (907)
Q Consensus       171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd  209 (907)
                      +++++++.+|.+.|++++|+|++++|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            478899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=3.9e-06  Score=92.69  Aligned_cols=183  Identities=14%  Similarity=0.172  Sum_probs=139.0

Q ss_pred             eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCC
Q 002564          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG  181 (907)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~  181 (907)
                      ++..++.|+-...+...|+.+.+.    .+........  ..++-.++  +.+.+|...|+|.+-|.++.+.++++..|+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e----~r~~~v~a~~--v~imR~Nn--r~lf~G~t~G~V~LrD~~s~~~iht~~aHs  217 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKE----TRTTNVSASG--VTIMRYNN--RNLFCGDTRGTVFLRDPNSFETIHTFDAHS  217 (1118)
T ss_pred             CCcceeecchhhheeeeeccccee----eeeeeccCCc--eEEEEecC--cEEEeecccceEEeecCCcCceeeeeeccc
Confidence            467788888888889999988877    4444444433  22333444  679999999999999999999999999999


Q ss_pred             CCEEEEEEcCCCCEEEEEec---------CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEE
Q 002564          182 SSISSCVSSPALDVVAVGCS---------DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (907)
Q Consensus       182 ~~I~~l~~sp~~~~la~g~~---------dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iw  252 (907)
                      +.|..+..  .|+.|++++.         |.-|+|||++.-+.+.-+..+  ....-+.|.|.-...+++++..|...+-
T Consensus       218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~--~~P~flrf~Psl~t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP--YGPQFLRFHPSLTTRLAVTSQSGQFQFV  293 (1118)
T ss_pred             cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc--cCchhhhhcccccceEEEEecccceeec
Confidence            99987655  5778888875         445899999988877666554  2236778888766678889999999999


Q ss_pred             E---CCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEE
Q 002564          253 N---LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI  296 (907)
Q Consensus       253 d---~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~  296 (907)
                      |   +.+...-..........+.++++++++..++.+..+|.|.+|.
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            9   4433222222223455699999999999999999999999996

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.42  E-value=0.00017  Score=81.13  Aligned_cols=194  Identities=14%  Similarity=0.148  Sum_probs=114.0

Q ss_pred             CEEEEEecCCcEEEEecCCCeEEEEEcCCCC------CEE--EEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecC
Q 002564          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGS------SIS--SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM  223 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~------~I~--~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~  223 (907)
                      +.+++++.++.|.-.|..+|+.+..+.....      .+.  .++.. ++..++.++.+|.|.-+|.++|+.+-++....
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            5688888899999999999999988764332      010  01111 22678888899999999999999998876542


Q ss_pred             CC----CEE-EEEEecCCCCEEEEEe---------CCCcEEEEECCCceeeeeeeccccc-------------------C
Q 002564          224 RG----AVT-ALAFSSDGQPLLASGA---------SSGVISIWNLEKRRLQSVIREAHDN-------------------A  270 (907)
Q Consensus       224 ~~----~v~-~l~fs~dg~~~l~sg~---------~dg~I~iwd~~~~~~~~~~~~~h~~-------------------~  270 (907)
                      ..    .+. +..+. ++  +++.++         .+|.+..+|..+|+.+-........                   .
T Consensus       141 ~~~~~~~i~ssP~v~-~~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         141 QVPPGYTMTGAPTIV-KK--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CcCcceEecCCCEEE-CC--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            10    011 12222 23  444553         3678999999999988777632111                   0


Q ss_pred             e-EEEEEecCCCEEEEEcCCC------------------cEEEEEccCCCCCcceeEeccCCCC----CCeEEEEe----
Q 002564          271 I-ISLHFFANEPVLMSASADN------------------SIKMWIFDTTDGDPRLLRFRSGHSA----PPLCIRFY----  323 (907)
Q Consensus       271 V-~~l~~~~~~~~l~s~~~d~------------------~i~vw~~~~~~~~~~~~~~~~~h~~----~v~~i~~~----  323 (907)
                      + .+.++.+.+..++.++.++                  .+.-.|..++...+.  .....|..    ........    
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~--~~~~~~~~~~~~~~s~p~~~~~~~  295 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF--YQTTPHDLWDYDGPNQPSLADIKP  295 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE--eeCCCCCCcccccCCCCeEEeccc
Confidence            1 1234444556777776665                  455555544432221  11111210    00001111    


Q ss_pred             cCCC---EEEEEeCCCCEEEEEceeccccee
Q 002564          324 ANGR---HILSAGQDRAFRLFSVIQDQQSRE  351 (907)
Q Consensus       324 ~~g~---~l~s~~~dg~i~iwd~~~~~~~~~  351 (907)
                      -+|.   .++.++.+|.+..+|..+++..-.
T Consensus       296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             cCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence            1333   577788889999999888776544

The alignment model contains an 8-bladed beta-propeller.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.41  E-value=9e-07  Score=86.74  Aligned_cols=123  Identities=15%  Similarity=0.226  Sum_probs=98.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----ccceeeeccccccccCcCCcEEEEEEcC-CCCEEEEEecCCeE
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSG-----ISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDI  498 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i  498 (907)
                      +.|-++.|...++.++.|+.+|.|..+|+..+     .....+         -|.+.|+++..-. ++++|++.+.+|+|
T Consensus       253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl---------yh~Ssvtslq~Lq~s~q~LmaS~M~gki  323 (425)
T KOG2695|consen  253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL---------YHDSSVTSLQILQFSQQKLMASDMTGKI  323 (425)
T ss_pred             hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE---------EcCcchhhhhhhccccceEeeccCcCce
Confidence            56677777888899999999999999999865     222222         6899999999877 78899999999999


Q ss_pred             EEEECCCCce---eeeeecC---cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecC
Q 002564          499 KVWDFKGRDL---KSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH  556 (907)
Q Consensus       499 ~iwd~~~~~~---~~~~~~~---~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h  556 (907)
                      ++||..--++   +.+++.+   ..-.-+...+....++++++|...+||.+..+.++.+++-.
T Consensus       324 kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  324 KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             eEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            9999986665   6777665   22233455677788999999999999999999999887643

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.40  E-value=3.2e-05  Score=83.64  Aligned_cols=197  Identities=20%  Similarity=0.245  Sum_probs=122.7

Q ss_pred             cEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEE-EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc-----
Q 002564          141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-----  214 (907)
Q Consensus       141 ~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~-----  214 (907)
                      .-.++....  ++++.|+.-|.+++|+-..++.... ..+-.+.+..+..|++..++|.|+..|.|.++-+..+.     
T Consensus        37 ~lTc~dst~--~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   37 KLTCVDATE--EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             EEEEeecCC--ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            334455555  7899999999999999666554332 23345667777889999999999999999999887543     


Q ss_pred             eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeEEEEEecCCCEEEEEcCCC
Q 002564          215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADN  290 (907)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~  290 (907)
                      .+......|+..|+|++|++|+. -+.+|...|.|..-.+.+.    .....+. .-.+.|..+.+.. +.+|++.. -.
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~q-~~LLVStl-~r  190 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEIL-SEDSEIVQLDYLQ-SYLLVSTL-TR  190 (726)
T ss_pred             eeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceee-ccCcceEEeeccc-ceehHhhh-hh
Confidence            12223333578999999999999 8999999999999988872    1111122 3456777777763 33333333 22


Q ss_pred             cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecC----CCEEEEEeCCCCEEEEEceecc
Q 002564          291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQ  347 (907)
Q Consensus       291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----g~~l~s~~~dg~i~iwd~~~~~  347 (907)
                      .+ +++.+..+  .+.+.......-.-...+|.|.    .+-.+.|++-| .|+|...-..
T Consensus       191 ~~-Lc~tE~et--i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G  247 (726)
T KOG3621|consen  191 CI-LCQTEAET--ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAG  247 (726)
T ss_pred             hh-eeecchhH--HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecce
Confidence            22 33333221  1112111111112345666663    34455666655 6888776443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=9.6e-06  Score=81.46  Aligned_cols=93  Identities=14%  Similarity=0.103  Sum_probs=71.5

Q ss_pred             EEEEECCCceeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC-
Q 002564          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG-  326 (907)
Q Consensus       249 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g-  326 (907)
                      +++.+..+.+....+. .|...|..++|+|... ++..++.++.|++.|+.+..    .......| ..+++++|.-|. 
T Consensus       175 v~~l~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~----~vssy~a~-~~~wSC~wDlde~  248 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC----VVSSYIAY-NQIWSCCWDLDER  248 (463)
T ss_pred             eEEeccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEecccce----eeeheecc-CCceeeeeccCCc
Confidence            5666655555555454 8889999999999877 78889999999999998763    34444455 789999998854 


Q ss_pred             CEEEEEeCCCCEEEEEceecc
Q 002564          327 RHILSAGQDRAFRLFSVIQDQ  347 (907)
Q Consensus       327 ~~l~s~~~dg~i~iwd~~~~~  347 (907)
                      ++++.|-..|.|.+||++..+
T Consensus       249 h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  249 HVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ceeEEeccCceEEEEEccCCC
Confidence            566677788999999987654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.38  E-value=0.00024  Score=76.50  Aligned_cols=304  Identities=10%  Similarity=0.050  Sum_probs=153.0

Q ss_pred             cCCCCEEEEEe---------cCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceee
Q 002564          190 SPALDVVAVGC---------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ  260 (907)
Q Consensus       190 sp~~~~la~g~---------~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~  260 (907)
                      |||+++++...         ..+.+.|||+.+++.......  ...+....|+|+|+ .++... ++.|.+++..++...
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCC-eeEEEe-cCceEEEECCCCCeE
Confidence            68888877743         236789999998765443333  46789999999999 565554 678999998877544


Q ss_pred             eeeeccc----------------ccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564          261 SVIREAH----------------DNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (907)
Q Consensus       261 ~~~~~~h----------------~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (907)
                      .....+-                -+.-.++.|+||+++|+.... +..|+.+.+........       ....+..+.+-
T Consensus        77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YP  149 (353)
T PF00930_consen   77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------QYPEVESIRYP  149 (353)
T ss_dssp             ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------SS-EEEEEE--
T ss_pred             EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------cCCcccccccC
Confidence            4333220                012245667777776665543 34444443221110000       00012222221


Q ss_pred             cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564          324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY  403 (907)
Q Consensus       324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~  403 (907)
                      .-|......    .+.++++.+++... +....                                               
T Consensus       150 k~G~~np~v----~l~v~~~~~~~~~~-~~~~~-----------------------------------------------  177 (353)
T PF00930_consen  150 KAGDPNPRV----SLFVVDLASGKTTE-LDPPN-----------------------------------------------  177 (353)
T ss_dssp             BTTS---EE----EEEEEESSSTCCCE-E---H-----------------------------------------------
T ss_pred             CCCCcCCce----EEEEEECCCCcEEE-eeecc-----------------------------------------------
Confidence            112111111    14445544333210 00000                                               


Q ss_pred             EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccceeeeccccccccCcCCcEE
Q 002564          404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV  478 (907)
Q Consensus       404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~  478 (907)
                                     ........+..+.|+++++.+++...+     ..+.++|..++..........    .+--..-.
T Consensus       178 ---------------~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~----~~Wv~~~~  238 (353)
T PF00930_consen  178 ---------------SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS----DGWVDVYD  238 (353)
T ss_dssp             ---------------HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES----SSSSSSSS
T ss_pred             ---------------ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC----Ccceeeec
Confidence                           001123567888899998844443322     256677887766654443111    11111222


Q ss_pred             EEEEc-CCC-CEEEEEecCCe--EEEEECCCCceeeeeecCcceeE-EEEeeCCCEEEE-EeC----CCeEEEEEcccce
Q 002564          479 GVACD-STN-TLMISAGYHGD--IKVWDFKGRDLKSRWEVGCSLVK-IVYHRVNGLLAT-VAD----DLVIRLFDVVALR  548 (907)
Q Consensus       479 ~l~~s-~~~-~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~i~~-~~~s~~~~~la~-~~~----dg~I~v~d~~~~~  548 (907)
                      ...+. +++ .++.....||.  |.+.+..++.........-.|.. +.++++++.|.. +..    ...+...++.++.
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~  318 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG  318 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence            44443 555 45555556765  55556666665544445556644 677888776554 433    2356666676334


Q ss_pred             eEEEeecCCCCeeeEEECCCCcEEEEE
Q 002564          549 MVRKFEGHTDRITDFCFSEDGKWLLSS  575 (907)
Q Consensus       549 ~~~~~~~h~~~I~~l~fspdg~~l~s~  575 (907)
                      .+..+....+.-..+.|||+|++++-.
T Consensus       319 ~~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  319 EPKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             EEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             CeEeccCCCCCceEEEECCCCCEEEEE
Confidence            455555443333689999999988744

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=0.00013  Score=80.88  Aligned_cols=196  Identities=13%  Similarity=0.223  Sum_probs=133.9

Q ss_pred             cEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCC-EEEEEEcCCCCEEEEEecCC-----eEEEEEccCC-
Q 002564          141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS-ISSCVSSPALDVVAVGCSDG-----KIHVHNVRYD-  213 (907)
Q Consensus       141 ~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~~~~la~g~~dg-----~I~iwd~~~~-  213 (907)
                      ...++++.+  ..++.|+.+|.|.+.| ++.+.++.|+.+... |..+-...+..+|++.+.|+     .++||+++.- 
T Consensus        27 ~isc~~s~~--~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISCCSSST--GSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeEEcCCC--ceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            455677777  7899999999998888 456677889888777 55554444446888776663     5899998732 


Q ss_pred             -----ceE---EEEe--ec-CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC---ceeeeeeecccccCeEEEEEecC
Q 002564          214 -----EEL---VTFT--HS-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAIISLHFFAN  279 (907)
Q Consensus       214 -----~~~---~~~~--~~-~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~  279 (907)
                           .++   ..+.  .+ ...++.+++.+.+-. .+|+|-.+|.|..+.-+-   ......+...-..+|+++++..+
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence                 223   1111  11 246889999999977 899999999999885321   11122222234579999999999


Q ss_pred             CCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564          280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (907)
                      +..++.+..-..|.+|.+...+   ........|..+..|..+++....+++++.. .+.+|+..
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd  243 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSD  243 (933)
T ss_pred             CceeEEEEecceeEEEEecCCC---cceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCC
Confidence            8863333335679999887332   2345567788899999999765556665544 47888754

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.35  E-value=0.0012  Score=76.29  Aligned_cols=242  Identities=14%  Similarity=0.180  Sum_probs=142.2

Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (907)
                      .+.|.++.|..++. -++.+...|.|.+-|.++......-  .-.+.|.+++|+||+..++..+.++++.+-..+-.   
T Consensus        68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eivg--~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~---  141 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLELEIVG--NVDNGISAASWSPDEELLALITGRQTLLFMTKDFE---  141 (1265)
T ss_pred             CcceEEEEEecccc-eEEEEecCCcEEEEcccccceeeee--eccCceEEEeecCCCcEEEEEeCCcEEEEEecccc---
Confidence            35899999999988 6777888999999988777543332  35688999999999999999888887776532211   


Q ss_pred             cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecc
Q 002564          304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE  383 (907)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  383 (907)
                        ++....-+.      .-.+.+ ..+..|..+.=.-+.-..+++...              .....             
T Consensus       142 --~i~E~~L~~------d~~~~s-k~v~VGwGrkeTqfrgs~gr~~~~--------------~~~~~-------------  185 (1265)
T KOG1920|consen  142 --PIAEKPLDA------DDERKS-KFVNVGWGRKETQFRGSEGRQAAR--------------QKIEK-------------  185 (1265)
T ss_pred             --chhcccccc------cccccc-ccceecccccceeeecchhhhccc--------------ccccc-------------
Confidence              111000010      111111 223333222111111000000000              00000             


Q ss_pred             cccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCcc
Q 002564          384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-----TAGGWIERFNLQSGIS  458 (907)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----~~dg~i~i~d~~~~~~  458 (907)
                                                    ..... .......-++++|--||.++++.     .....|++||-. |..
T Consensus       186 ------------------------------ek~~~-~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L  233 (1265)
T KOG1920|consen  186 ------------------------------EKALE-QIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL  233 (1265)
T ss_pred             ------------------------------ccccc-chhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh
Confidence                                          00000 00112445678999999999883     333689999987 433


Q ss_pred             ceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe---cCCeEEEEECCC---CceeeeeecC-cceeEEEEeeCCCEEE
Q 002564          459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKG---RDLKSRWEVG-CSLVKIVYHRVNGLLA  531 (907)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---~dg~i~iwd~~~---~~~~~~~~~~-~~i~~~~~s~~~~~la  531 (907)
                      -..-        ....+.-.+++|-|.|..+++-.   .|+.|.++.-+.   +...-.+... .++..++|+.++..||
T Consensus       234 ns~s--------e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA  305 (1265)
T KOG1920|consen  234 NSTS--------EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA  305 (1265)
T ss_pred             hccc--------CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence            2221        12334456899999999888764   566798987442   2222222233 3489999999999999


Q ss_pred             E---EeCCCeEEEEEcccc
Q 002564          532 T---VADDLVIRLFDVVAL  547 (907)
Q Consensus       532 ~---~~~dg~I~v~d~~~~  547 (907)
                      +   ......|++|-+.+.
T Consensus       306 v~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  306 VVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeecccccceEEEEEecCe
Confidence            8   455556999988764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=0.00014  Score=80.54  Aligned_cols=207  Identities=15%  Similarity=0.188  Sum_probs=137.3

Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccC-eEEEEEecCCCEEEEEcCCCc-----EEEEEccCCCCC--
Q 002564          232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA-IISLHFFANEPVLMSASADNS-----IKMWIFDTTDGD--  303 (907)
Q Consensus       232 fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~~~d~~-----i~vw~~~~~~~~--  303 (907)
                      |++.+. .++.|+.+|.|.+.+ ..-+.+..++ ++... |..+....+..+|++.+.|+.     +++|+++..++.  
T Consensus        31 ~~s~~~-~vvigt~~G~V~~Ln-~s~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   31 CSSSTG-SVVIGTADGRVVILN-SSFQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EcCCCc-eEEEeeccccEEEec-ccceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            456666 899999999998888 3445556666 66666 555655555578888887654     899999876332  


Q ss_pred             ccee---Eecc----CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCce
Q 002564          304 PRLL---RFRS----GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (907)
Q Consensus       304 ~~~~---~~~~----~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  376 (907)
                      +.++   +...    ....++.+++.+.+-+.+++|-.+|.|..+.-.   ..+....                      
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---i~RDrgs----------------------  162 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---ILRDRGS----------------------  162 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---chhcccc----------------------
Confidence            4444   2211    135678899999998899999999998877421   1110000                      


Q ss_pred             eEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 002564          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  456 (907)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~  456 (907)
                                                           +  .........+|+.+++..++..++.......|.+|.+...
T Consensus       163 -------------------------------------r--~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr  203 (933)
T KOG2114|consen  163 -------------------------------------R--QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR  203 (933)
T ss_pred             -------------------------------------c--eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence                                                 0  0000122378999999999988444445567999999844


Q ss_pred             ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeee
Q 002564          457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE  513 (907)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  513 (907)
                      .+.....       ..|...+.|..+++....+++++. ..+.+|+.....+...+.
T Consensus       204 ~p~~~~l-------d~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  204 TPSLKVL-------DNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             Ccceeee-------ccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence            4233322       367888999999886664555553 588999988666655555

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.33  E-value=7.7e-05  Score=80.82  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=91.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee-
Q 002564          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-  259 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~-  259 (907)
                      ...|.--+++..+++++.|+..|.+.+|+-..++....-.....+.+..+..+++.. ++|.|+..|.|.++-+..+.. 
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCC
Confidence            455556667778899999999999999997766644433323345677777888776 899999999999998876532 


Q ss_pred             ----eeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 002564          260 ----QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (907)
Q Consensus       260 ----~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~  299 (907)
                          +......|...|++++|++++..+++|...|.|..-.++.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                2222234788999999999999999999999999888776

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.32  E-value=1.3e-05  Score=88.74  Aligned_cols=178  Identities=13%  Similarity=0.189  Sum_probs=134.2

Q ss_pred             cCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe---EEEEeCC--eeEEEEcccccceEE
Q 002564           24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRA--HQVATWSRHSAKVNL   98 (907)
Q Consensus        24 ~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---I~vw~~~--~~~~~~~~h~~~V~~   98 (907)
                      .+...++.+.....+..+|..+.+......-....|+-|..  +++++.+|.+   |.+-|..  +.++++..|++.|..
T Consensus       145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  145 MGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             cCCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            47888899988888999999998776665444444555444  4566666544   7777753  457789999999999


Q ss_pred             EEeeCCEEEEEec---------CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEe--
Q 002564           99 LLLFGEHILSIDI---------DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWN--  167 (907)
Q Consensus        99 l~~~g~~l~s~~~---------dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd--  167 (907)
                      +...|+.|++||.         |.-|+|||+...+.    +..+.++.+. .-+-|+|.-. ..+++++..|...+-|  
T Consensus       223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~~~P-~flrf~Psl~-t~~~V~S~sGq~q~vd~~  296 (1118)
T KOG1275|consen  223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFPYGP-QFLRFHPSLT-TRLAVTSQSGQFQFVDTA  296 (1118)
T ss_pred             eeccCCeEEEeecccccccccccchhhhhhhhhhhc----cCCcccccCc-hhhhhccccc-ceEEEEecccceeecccc
Confidence            9999999999987         45589999988776    4444444443 2345777654 6889999999999998  


Q ss_pred             -cCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          168 -ISTK-KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (907)
Q Consensus       168 -~~~~-~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd  209 (907)
                       +.+. .-++.+...+..+..+.+|++++.+|.|..+|.|.+|.
T Consensus       297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence             3332 23344455567799999999999999999999999997

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.27  E-value=0.00023  Score=76.34  Aligned_cols=278  Identities=12%  Similarity=0.098  Sum_probs=142.4

Q ss_pred             CCeEEEEecCCCEEEEEeCCCCEEEEEceecccce-eechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEE
Q 002564          316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT  394 (907)
Q Consensus       316 ~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  394 (907)
                      .|+.+.|.++..-|+.+...|.|.+|.....+... .-.......+...........                       
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------   59 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPG-----------------------   59 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS------------------------
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCc-----------------------
Confidence            47889999998899999999999999887755433 111101000000000000000                       


Q ss_pred             EeeCCceEEEEEeeece-----ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccccc
Q 002564          395 CHMDTAQAYVWRLQNFV-----LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS  469 (907)
Q Consensus       395 ~~~~~~~v~~w~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~  469 (907)
                              .+-|+....     .+...........++|++++.| +=-++++|+.+|.+.+.|++....+..-.-.....
T Consensus        60 --------~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~  130 (395)
T PF08596_consen   60 --------KLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFL  130 (395)
T ss_dssp             --------SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T
T ss_pred             --------ceEEehhhCCcccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeecccccccc
Confidence                    001111000     0000011111225899999997 55699999999999999998776665532111001


Q ss_pred             ccCcCCcEEEEEEc-----CCC---CEEEEEecCCeEEEEECCC---Ccee----eee-ecCcceeEEE-EeeC------
Q 002564          470 NYAHNGEVVGVACD-----STN---TLMISAGYHGDIKVWDFKG---RDLK----SRW-EVGCSLVKIV-YHRV------  526 (907)
Q Consensus       470 ~~~h~~~v~~l~~s-----~~~---~~l~s~~~dg~i~iwd~~~---~~~~----~~~-~~~~~i~~~~-~s~~------  526 (907)
                      .......|+++.|.     .|+   -.+++|...|.+.+|.+.-   +...    ... ...+++..+. +..+      
T Consensus       131 ~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~  210 (395)
T PF08596_consen  131 SKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESAL  210 (395)
T ss_dssp             -SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B
T ss_pred             ccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCccc
Confidence            12334568888775     233   4778888999999998751   1111    111 2234554444 3221      


Q ss_pred             -----------C---CEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEEC-----CCCcEEEEEeCCCcEEEEEcC
Q 002564          527 -----------N---GLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS-----EDGKWLLSSGMDGSLRIWDVI  587 (907)
Q Consensus       527 -----------~---~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fs-----pdg~~l~s~s~Dg~I~vwd~~  587 (907)
                                 +   .-+++...+..++++...+.+...+.....-....+++-     ..+..|++-..+|.|++|.++
T Consensus       211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP  290 (395)
T PF08596_consen  211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP  290 (395)
T ss_dssp             -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred             CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence                       0   124444557789999998887766655332233344552     356678888899999999999


Q ss_pred             CCceeeEeeeCCc-----eEEEEECCCCceEEEEEecCCeEEEee
Q 002564          588 LARQIDAIHVDVS-----ITALSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       588 ~~~~~~~~~~~~~-----v~~l~~spdg~~lat~~~d~~~i~lW~  627 (907)
                      .-+.+..+.....     +...+++++|+.++..+...  +.++.
T Consensus       291 ~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE--~~l~s  333 (395)
T PF08596_consen  291 SLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSE--IQLFS  333 (395)
T ss_dssp             T--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSE--EEEEE
T ss_pred             CchHhhcccCCCccccccccccEECCCCCEEEEeCccc--EEEEE
Confidence            9999888876432     66778899999888776654  44444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.25  E-value=0.00091  Score=69.49  Aligned_cols=181  Identities=15%  Similarity=0.137  Sum_probs=95.1

Q ss_pred             EEcCCCCCCEEEEEec-C--CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEe
Q 002564          144 IMHPDTYLNKVIVGSQ-E--GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (907)
Q Consensus       144 ~~~p~~~~~~l~~~s~-d--g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~  220 (907)
                      +|.+++  ++|+.++. +  ..+.+.|+.+++..+--.+-.........+|+.+.++-......++-.|+.+.+....+.
T Consensus        42 ~ft~dG--~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   42 CFTDDG--RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             -B-TTS---EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CcCCCC--CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            456777  56666554 4  467777999998877655432333346677888887766556789999999988765555


Q ss_pred             ecCCCCEEEEEEec--CCCCEEEEEe---C-------------------CCcEEEEECCCceeeeeeecccccCeEEEEE
Q 002564          221 HSMRGAVTALAFSS--DGQPLLASGA---S-------------------SGVISIWNLEKRRLQSVIREAHDNAIISLHF  276 (907)
Q Consensus       221 ~~~~~~v~~l~fs~--dg~~~l~sg~---~-------------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~  276 (907)
                      .+ ...+-...|..  |+. .++..-   .                   .+.|.--|+.+|+....+.  -...+..+.|
T Consensus       120 ~p-~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~f  195 (386)
T PF14583_consen  120 VP-DDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQF  195 (386)
T ss_dssp             ---TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS-EEEEEE
T ss_pred             CC-cccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCccccCccc
Confidence            54 55565566653  444 333221   0                   2346667888887666554  5567889999


Q ss_pred             ecCCCEEEEEcC----CCc-EEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564          277 FANEPVLMSASA----DNS-IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (907)
Q Consensus       277 ~~~~~~l~s~~~----d~~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s  331 (907)
                      +|..+.+++=+.    +.. -|||-++......+.+.... -...+..=-|.|||..+..
T Consensus       196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEE
T ss_pred             CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEE
Confidence            997765555432    332 38898887655444433221 1222333457778876654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.24  E-value=0.0034  Score=70.94  Aligned_cols=61  Identities=16%  Similarity=0.127  Sum_probs=44.8

Q ss_pred             CeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecC
Q 002564          496 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH  556 (907)
Q Consensus       496 g~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h  556 (907)
                      |.|.-+|+.+++..-..+...+...-.+.-.+.++++++.+|.++.+|.++|+.+.+++-.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            4577888888888777665543322223335667888888999999999999999888744

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.16  E-value=0.0013  Score=71.69  Aligned_cols=204  Identities=15%  Similarity=0.133  Sum_probs=107.7

Q ss_pred             cEEEEecCCC------CccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEE
Q 002564          114 NMFIWAFKGI------EENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSC  187 (907)
Q Consensus       114 ~v~vWd~~~~------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l  187 (907)
                      .|+..|+...      +......+.+...........++|++  +.+++ +.+|.-.++.....+....-.+     ...
T Consensus         3 ~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npng--r~v~V-~g~geY~iyt~~~~r~k~~G~g-----~~~   74 (443)
T PF04053_consen    3 EIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNG--RFVLV-CGDGEYEIYTALAWRNKAFGSG-----LSF   74 (443)
T ss_dssp             EEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTS--SEEEE-EETTEEEEEETTTTEEEEEEE------SEE
T ss_pred             ceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCC--CEEEE-EcCCEEEEEEccCCcccccCce-----eEE
Confidence            3445555443      33333345555555667788899999  77777 5678888888555555443333     457


Q ss_pred             EEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc
Q 002564          188 VSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH  267 (907)
Q Consensus       188 ~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h  267 (907)
                      +|.+.+ ..|+-..++.|.|+.--..+....+..+  ..+..+-.   |. +|...+. +.|.+||+++++.+..+.  .
T Consensus        75 vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~---G~-LL~~~~~-~~i~~yDw~~~~~i~~i~--v  144 (443)
T PF04053_consen   75 VWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG---GN-LLGVKSS-DFICFYDWETGKLIRRID--V  144 (443)
T ss_dssp             EE-TSS-EEEEE-TTS-EEEEETTEE-TT-----S--S-EEEEE----SS-SEEEEET-TEEEEE-TTT--EEEEES--S
T ss_pred             EEecCc-cEEEEECCCeEEEEEcCccccceEEcCC--cccceEEc---Cc-EEEEECC-CCEEEEEhhHcceeeEEe--c
Confidence            788855 4677676889999633233333344433  23444443   77 6666654 489999999999999987  2


Q ss_pred             ccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC-------CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEE
Q 002564          268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTT-------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (907)
Q Consensus       268 ~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~-------~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~i  340 (907)
                      . +|..+.|++++.+++..+. ..+.+++.+..       ++..........-...|.+..|..+  .++..+.. .++.
T Consensus       145 ~-~vk~V~Ws~~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY  219 (443)
T PF04053_consen  145 S-AVKYVIWSDDGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY  219 (443)
T ss_dssp             --E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred             C-CCcEEEEECCCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence            2 3899999999999998885 47888876543       1111123333333578888899866  44444444 5555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=7.5e-05  Score=82.01  Aligned_cols=184  Identities=12%  Similarity=0.168  Sum_probs=128.9

Q ss_pred             ccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe
Q 002564           93 SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK  172 (907)
Q Consensus        93 ~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~  172 (907)
                      ...+.+.++.+.+|+-|..+|.|++.+......      +...+...      .-+|  .++++|+.||+|.|-.+-+.+
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~------~~~~~s~~------~~~G--ey~asCS~DGkv~I~sl~~~~  104 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPK------TNFDHSSS------ILEG--EYVASCSDDGKVVIGSLFTDD  104 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecCCccc------cccccccc------ccCC--ceEEEecCCCcEEEeeccCCc
Confidence            345666777899999999999999998765421      11111111      3445  799999999999999988888


Q ss_pred             EEEEEcCCCCCEEEEEEcCC-----CCEEEEEecCCeEEEEEccC-CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCC
Q 002564          173 KLYEFKGWGSSISSCVSSPA-----LDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASS  246 (907)
Q Consensus       173 ~~~~~~~h~~~I~~l~~sp~-----~~~la~g~~dg~I~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d  246 (907)
                      ...++.- ..++.+++++|+     .+.+++|+..| +.++.-.- |...........|+|.++.|.  |. ++|-++.+
T Consensus       105 ~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~-lIAWand~  179 (846)
T KOG2066|consen  105 EITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GN-LIAWANDD  179 (846)
T ss_pred             cceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--Cc-EEEEecCC
Confidence            7776664 678999999998     45788999888 77775331 111122233347899999997  44 77777655


Q ss_pred             CcEEEEECCCceeeeeeeccccc-----CeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564          247 GVISIWNLEKRRLQSVIREAHDN-----AIISLHFFANEPVLMSASADNSIKMWIFD  298 (907)
Q Consensus       247 g~I~iwd~~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (907)
                       -|+|||..+++.+..+...+..     --..+.|.++. .|+.|= ..+|++..+.
T Consensus       180 -Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  180 -GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSIK  233 (846)
T ss_pred             -CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEEe
Confidence             5999999999988888744421     23467777665 455554 3478888776

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.0045  Score=67.24  Aligned_cols=279  Identities=12%  Similarity=0.139  Sum_probs=182.1

Q ss_pred             EEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC
Q 002564          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (907)
Q Consensus       249 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~  327 (907)
                      +.+++..+.+....+. .+. ....+...+++..+..... ...+...  +....  ........-......+..++.+.
T Consensus        13 ~~v~~~~~~~~~~~~~-~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~--~~~~n--~~~~~~~~g~~~p~~i~v~~~~~   86 (381)
T COG3391          13 VSVINTGTNKVTAAIS-LGR-GPGGVAVNPDGTQVYVANSGSNDVSVI--DATSN--TVTQSLSVGGVYPAGVAVNPAGN   86 (381)
T ss_pred             eEEEeecccEEEEEee-cCC-CCceeEEcCccCEEEEEeecCceeeec--ccccc--eeeeeccCCCccccceeeCCCCC
Confidence            6667766666665555 222 5667777888854444332 2233333  22211  11111111114556788888777


Q ss_pred             EEE-EEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEE
Q 002564          328 HIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (907)
Q Consensus       328 ~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~  406 (907)
                      .++ ....++.+.+.|............                                                    
T Consensus        87 ~vyv~~~~~~~v~vid~~~~~~~~~~~v----------------------------------------------------  114 (381)
T COG3391          87 KVYVTTGDSNTVSVIDTATNTVLGSIPV----------------------------------------------------  114 (381)
T ss_pred             eEEEecCCCCeEEEEcCcccceeeEeee----------------------------------------------------
Confidence            554 444557888888554433322211                                                    


Q ss_pred             eeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEc
Q 002564          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD  483 (907)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  483 (907)
                                       ......++++++++.+.++..   ++.+.+.|..++.......       .+- .+ ..++++
T Consensus       115 -----------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-------vG~-~P-~~~a~~  168 (381)
T COG3391         115 -----------------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-------VGN-TP-TGVAVD  168 (381)
T ss_pred             -----------------ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-------cCC-Cc-ceEEEC
Confidence                             024567899999988888776   6899999999988887743       122 23 899999


Q ss_pred             CCCCEEEEEe-cCCeEEEEECCCCceee-----eeecCcceeEEEEeeCCCEEEEEeCC---CeEEEEEcccceeEEE-e
Q 002564          484 STNTLMISAG-YHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRK-F  553 (907)
Q Consensus       484 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~-----~~~~~~~i~~~~~s~~~~~la~~~~d---g~I~v~d~~~~~~~~~-~  553 (907)
                      |+|..++.+. .++.|.+.|.......+     ..........+.++|+|..+.+....   +.+...|..++..... .
T Consensus       169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~  248 (381)
T COG3391         169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL  248 (381)
T ss_pred             CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence            9999666655 78999999987766663     23334566788999999977776655   5999999998887765 2


Q ss_pred             ecCCCCeeeEEECCCCcEEEEEeC-CCcEEEEEcCCCceeeEeeeCCc----eEEEEECCCCc
Q 002564          554 EGHTDRITDFCFSEDGKWLLSSGM-DGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMD  611 (907)
Q Consensus       554 ~~h~~~I~~l~fspdg~~l~s~s~-Dg~I~vwd~~~~~~~~~~~~~~~----v~~l~~spdg~  611 (907)
                      ..-......+.++|+|+++.+... .+.+.+-|..+.+....+.....    +..+++.+...
T Consensus       249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  311 (381)
T COG3391         249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD  311 (381)
T ss_pred             ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence            222214567899999999887744 48899999998888877654433    66666665443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.13  E-value=0.00096  Score=72.68  Aligned_cols=182  Identities=16%  Similarity=0.131  Sum_probs=97.6

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  504 (907)
                      +.....+|.+.++ +++-..++.|.++.--.......+.         ....+..+..   |.+|...+. +.|.+||..
T Consensus        69 G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~---------~~~~~~~If~---G~LL~~~~~-~~i~~yDw~  134 (443)
T PF04053_consen   69 GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK---------LPFSVEKIFG---GNLLGVKSS-DFICFYDWE  134 (443)
T ss_dssp             EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--------------SS-EEEEE----SSSEEEEET-TEEEEE-TT
T ss_pred             CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc---------CCcccceEEc---CcEEEEECC-CCEEEEEhh
Confidence            3445677888555 5555568889997433333322332         1123444443   777777665 489999999


Q ss_pred             CCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-----------eeEEEeecCCCCeeeEEECCCCcEEE
Q 002564          505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-----------RMVRKFEGHTDRITDFCFSEDGKWLL  573 (907)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-----------~~~~~~~~h~~~I~~l~fspdg~~l~  573 (907)
                      +++.++.+.... |..+.|++++.++|..+.+ .+.|++.+..           .....+..-...|.+.+|..|  .++
T Consensus       135 ~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fi  210 (443)
T PF04053_consen  135 TGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFI  210 (443)
T ss_dssp             T--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEE
T ss_pred             HcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEE
Confidence            999999998764 8999999999999999865 6667665433           022233222568999999766  444


Q ss_pred             EEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564          574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       574 s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (907)
                      -.+.. .|+.  +..|..-..-....++.=+...|..+.+.....+++ |..+.+
T Consensus       211 YtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~-v~~~~l  261 (443)
T PF04053_consen  211 YTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGN-VISYEL  261 (443)
T ss_dssp             EE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT---EEEEE-
T ss_pred             EEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCC-EEEEEE
Confidence            44444 6776  444544333334566666777776677777777763 666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.13  E-value=0.0013  Score=70.90  Aligned_cols=289  Identities=11%  Similarity=0.106  Sum_probs=143.4

Q ss_pred             CCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecC----------------
Q 002564          160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM----------------  223 (907)
Q Consensus       160 dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~----------------  223 (907)
                      .+.+.+||+++++....... ...+....|||+|+.+|... ++.|.+++..++...+--..+.                
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            46789999999766554433 67888999999999999876 5789999988774332222110                


Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccc--cCeEEEEEecCCCEEEEEcCCCcEEEEEccCCC
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD--NAIISLHFFANEPVLMSASADNSIKMWIFDTTD  301 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~  301 (907)
                      -+.-.++-|||||+.++..--.+..|..+.+.....      .+.  ..+..+.+-.-      |..+-.+++|-++..+
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~------~~~~yp~~~~~~YPk~------G~~np~v~l~v~~~~~  167 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSP------PDSQYPEVESIRYPKA------GDPNPRVSLFVVDLAS  167 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESS------STESS-EEEEEE--BT------TS---EEEEEEEESSS
T ss_pred             cccccceEECCCCCEEEEEEECCcCCceEEeeccCC------ccccCCcccccccCCC------CCcCCceEEEEEECCC
Confidence            112356889999994444444555555554311100      000  12333433221      2223344444444333


Q ss_pred             CCcceeEec---cCCCCCCeEEEEecCCCEEEEE--eCCCC---EEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564          302 GDPRLLRFR---SGHSAPPLCIRFYANGRHILSA--GQDRA---FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL  373 (907)
Q Consensus       302 ~~~~~~~~~---~~h~~~v~~i~~~~~g~~l~s~--~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (907)
                      +....+...   ..-..-+..+.|.++++.++..  .++..   +.++|..++......                     
T Consensus       168 ~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~---------------------  226 (353)
T PF00930_consen  168 GKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL---------------------  226 (353)
T ss_dssp             TCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE---------------------
T ss_pred             CcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEE---------------------
Confidence            332222222   2334567888999988744433  33322   222333221111000                     


Q ss_pred             CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEc-CCC-CEEEEEeCCC--cEE
Q 002564          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACG-NFAVLGTAGG--WIE  449 (907)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g-~~l~~g~~dg--~i~  449 (907)
                                                                 .....+--.......+. +++ .++.....+|  +|+
T Consensus       227 -------------------------------------------~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly  263 (353)
T PF00930_consen  227 -------------------------------------------EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY  263 (353)
T ss_dssp             -------------------------------------------EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred             -------------------------------------------EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence                                                       00000000111233333 444 4555555666  566


Q ss_pred             EEeCCCCccceeeeccccccccCcCCcEEE-EEEcCCCCEEE-EEecC----CeEEEEECCCCceeeeeecCcce-eEEE
Q 002564          450 RFNLQSGISRGSYLDMSERSNYAHNGEVVG-VACDSTNTLMI-SAGYH----GDIKVWDFKGRDLKSRWEVGCSL-VKIV  522 (907)
Q Consensus       450 i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~-s~~~d----g~i~iwd~~~~~~~~~~~~~~~i-~~~~  522 (907)
                      +++...+... .+        ....-.|.. +.++++++.+. ++..+    ..|..-++..+.....+...... ..+.
T Consensus       264 ~~~~~~~~~~-~l--------T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~  334 (353)
T PF00930_consen  264 LYDLDGGKPR-QL--------TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSAS  334 (353)
T ss_dssp             EEETTSSEEE-ES--------S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEE
T ss_pred             EEccccccee-cc--------ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEE
Confidence            6666666533 22        234455644 67788876654 45442    25656666623344445444444 4999


Q ss_pred             EeeCCCEEEEEeC
Q 002564          523 YHRVNGLLATVAD  535 (907)
Q Consensus       523 ~s~~~~~la~~~~  535 (907)
                      |||++++++..+.
T Consensus       335 ~Spdg~y~v~~~s  347 (353)
T PF00930_consen  335 FSPDGKYYVDTYS  347 (353)
T ss_dssp             E-TTSSEEEEEEE
T ss_pred             ECCCCCEEEEEEc
Confidence            9999998877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.11  E-value=0.021  Score=61.81  Aligned_cols=76  Identities=12%  Similarity=0.115  Sum_probs=66.0

Q ss_pred             CcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccce
Q 002564          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR  548 (907)
Q Consensus       472 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~  548 (907)
                      .....|.+.+++|+...++.|+.||.|.+||...+... ..+..-..+.++|||+|.++++|++.|.+.+||+.-..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            67789999999999999999999999999998776433 33555778899999999999999999999999987543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.10  E-value=0.0048  Score=69.73  Aligned_cols=165  Identities=13%  Similarity=0.187  Sum_probs=98.6

Q ss_pred             cEEEEeCCCCccceeeecccccccc-CcCCcEEEEEEcCCCC---EEEEEecCCeEEEEECCCCceeee--------e--
Q 002564          447 WIERFNLQSGISRGSYLDMSERSNY-AHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFKGRDLKSR--------W--  512 (907)
Q Consensus       447 ~i~i~d~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~--------~--  512 (907)
                      .|.-.|+.+|+..-.++......-. .-.....-+.+..+|+   .++.+..+|.+.+.|-.+++++..        +  
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~  351 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT  351 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence            5777888899888887632111000 0001122233334665   778899999999999999987521        1  


Q ss_pred             --ecC--cce----------------------------eEEEEeeCCCEEEEEeCC------------------------
Q 002564          513 --EVG--CSL----------------------------VKIVYHRVNGLLATVADD------------------------  536 (907)
Q Consensus       513 --~~~--~~i----------------------------~~~~~s~~~~~la~~~~d------------------------  536 (907)
                        ...  .++                            ..++++|+..++.+...+                        
T Consensus       352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (527)
T TIGR03075       352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT  431 (527)
T ss_pred             ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence              000  000                            125566666655544332                        


Q ss_pred             ---------CeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEE--EE
Q 002564          537 ---------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LS  605 (907)
Q Consensus       537 ---------g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~--l~  605 (907)
                               +.+.-+|+.+++.+-+.........+. ..-.+..++.++.||.++.+|..+|+.+-.++....+.+  +.
T Consensus       432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~t  510 (527)
T TIGR03075       432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVT  510 (527)
T ss_pred             cCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEE
Confidence                     457778888888877665332212222 122445677788899999999999999999887665333  23


Q ss_pred             ECCCCce
Q 002564          606 LSPNMDV  612 (907)
Q Consensus       606 ~spdg~~  612 (907)
                      +.-+|+.
T Consensus       511 y~~~G~q  517 (527)
T TIGR03075       511 YEQDGKQ  517 (527)
T ss_pred             EEeCCEE
Confidence            3345554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.06  E-value=0.0046  Score=67.53  Aligned_cols=110  Identities=12%  Similarity=0.110  Sum_probs=63.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  504 (907)
                      +++..+++||+|++++.-+.+|.+.+.+..-.+....+.       ..-......+.|..+...++.-  ...+.+....
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~-------~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~  287 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD-------TDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPD  287 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee-------cCcCCCCcEEEEECCCcEEEEe--CCEEEEECCC
Confidence            689999999999999999999999998876665555554       1223445566665443222221  2233333211


Q ss_pred             CCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCC
Q 002564          505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT  557 (907)
Q Consensus       505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~  557 (907)
                      .             ..+.|.-++..++..--|| +||+.-.+.+.+++.....
T Consensus       288 ~-------------~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~~  326 (410)
T PF04841_consen  288 G-------------DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDST  326 (410)
T ss_pred             C-------------CceEEeccCceEEeccCCc-eEEEeCCceEEEEECCHHH
Confidence            1             1123333344444444454 7777666666666655433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.03  E-value=0.0025  Score=63.35  Aligned_cols=214  Identities=12%  Similarity=0.112  Sum_probs=118.3

Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (907)
                      ...+..++|.|+...++++....+.|..++. +|+.+..+...-.+..-++++..++.++++.-.++.+.++.++..+..
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            3469999999987768888889999999997 578888887444567889999988877777767899999988554322


Q ss_pred             cce--eE-----eccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecc---cceeechhhhhHHHhhccchhhhccc
Q 002564          304 PRL--LR-----FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ---QSRELSQRHVAKRARKLKMKEEELKL  373 (907)
Q Consensus       304 ~~~--~~-----~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (907)
                      ...  ..     ....+...+-.++|.+.++.|+.+-......++.+....   ............              
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~--------------  165 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD--------------  165 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH---------------
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc--------------
Confidence            111  11     112345678999999988888888777777787765411   110000000000              


Q ss_pred             CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 002564          374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFN  452 (907)
Q Consensus       374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~i~d  452 (907)
                                                                    .......+.+++++|. |++++....+..|..+|
T Consensus       166 ----------------------------------------------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d  199 (248)
T PF06977_consen  166 ----------------------------------------------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD  199 (248)
T ss_dssp             ----------------------------------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred             ----------------------------------------------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence                                                          0011145677788775 45666777777888888


Q ss_pred             CCCCccceeeeccccc-cccCcCCcEEEEEEcCCCCEEEEEecCCeEEE
Q 002564          453 LQSGISRGSYLDMSER-SNYAHNGEVVGVACDSTNTLMISAGYHGDIKV  500 (907)
Q Consensus       453 ~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i  500 (907)
                       ..|+.+..+...... .....-...-+|+++++|++.+++ .-+..++
T Consensus       200 -~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~  246 (248)
T PF06977_consen  200 -RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR  246 (248)
T ss_dssp             -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred             -CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence             556655554421110 001112468899999999765554 4444443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.03  E-value=0.0012  Score=70.88  Aligned_cols=242  Identities=11%  Similarity=0.147  Sum_probs=129.7

Q ss_pred             CeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCc----------------------c-----------------eeEec
Q 002564          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP----------------------R-----------------LLRFR  310 (907)
Q Consensus       270 ~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~----------------------~-----------------~~~~~  310 (907)
                      .|+.+.|.++..-|+++...|.|.+|.+.......                      .                 ....+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999998899999999999999775442111                      0                 01111


Q ss_pred             cCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccccccc
Q 002564          311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC  390 (907)
Q Consensus       311 ~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  390 (907)
                      ....++|++++.+.=| +++.|..+|.+.+.|++.+..+..-....                                  
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~----------------------------------  127 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE----------------------------------  127 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG----------------------------------
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc----------------------------------
Confidence            2236788888887544 89999999999999997665444321110                                  


Q ss_pred             ceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEc-----CCC---CEEEEEeCCCcEEEEeCCC---Cccc
Q 002564          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-----ACG---NFAVLGTAGGWIERFNLQS---GISR  459 (907)
Q Consensus       391 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g---~~l~~g~~dg~i~i~d~~~---~~~~  459 (907)
                                              +  .........++++.|+     .|+   -.+++|++.|.+.+|.+.-   +...
T Consensus       128 ------------------------~--~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~  181 (395)
T PF08596_consen  128 ------------------------S--FLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFS  181 (395)
T ss_dssp             ----------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EE
T ss_pred             ------------------------c--ccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceE
Confidence                                    0  0000111334444443     223   4688999999999998742   2222


Q ss_pred             eeeeccccccccCcCCcEEEEE-EcCCC--------------------CEEEEEecCCeEEEEECCCCceeeeeecC-cc
Q 002564          460 GSYLDMSERSNYAHNGEVVGVA-CDSTN--------------------TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CS  517 (907)
Q Consensus       460 ~~~~~~~~~~~~~h~~~v~~l~-~s~~~--------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~  517 (907)
                      ..+..    ....+.+.|..+. ++.+.                    .-++....+..++++...+.+..+..... ..
T Consensus       182 v~~~~----~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~  257 (395)
T PF08596_consen  182 VQFAG----ATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFL  257 (395)
T ss_dssp             EEEEE----EE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EE
T ss_pred             EEEee----ccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccc
Confidence            22211    0124556665555 32210                    12334444688999999887766554422 22


Q ss_pred             eeEEEE-----eeCCCEEEEEeCCCeEEEEEcccceeEEEeecCC----CCeeeEEECCCCcEEEEEe
Q 002564          518 LVKIVY-----HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT----DRITDFCFSEDGKWLLSSG  576 (907)
Q Consensus       518 i~~~~~-----s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~----~~I~~l~fspdg~~l~s~s  576 (907)
                      ...+++     ...+..|++-..+|.|++|.+...+.+..+.-+.    ..+...+|+++|..++-.+
T Consensus       258 ~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g  325 (395)
T PF08596_consen  258 CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG  325 (395)
T ss_dssp             EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred             cceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence            233344     2356788888999999999999998888776542    2355667777777655444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.96  E-value=0.014  Score=63.17  Aligned_cols=115  Identities=14%  Similarity=0.143  Sum_probs=80.9

Q ss_pred             CCEEEEEEecCCCCEEEEEe----CCCc----EEEEECCCce--eeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEE
Q 002564          225 GAVTALAFSSDGQPLLASGA----SSGV----ISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM  294 (907)
Q Consensus       225 ~~v~~l~fs~dg~~~l~sg~----~dg~----I~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~v  294 (907)
                      ....++.|+....+.+.+-.    .+|.    -.+|++..++  .+........+.|.+++++|++..++.|+.||+|.+
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            34456666654333333321    2332    3456665543  333333457889999999999999999999999999


Q ss_pred             EEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEcee
Q 002564          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (907)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~  345 (907)
                      ||...+.      .......-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus       286 yD~~~~~------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  286 YDTTRGV------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEcCCCe------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            9876542      22223456689999999999999999999999999864

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.96  E-value=0.0016  Score=69.24  Aligned_cols=179  Identities=15%  Similarity=0.159  Sum_probs=112.9

Q ss_pred             CCEEEEEeC---------C-CcEEEEeCCCC----ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEE
Q 002564          436 GNFAVLGTA---------G-GWIERFNLQSG----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (907)
Q Consensus       436 g~~l~~g~~---------d-g~i~i~d~~~~----~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  501 (907)
                      ..++++|+.         . |.|.+|++...    .......      .....++|++++-- .+ .++.+. .+.|.+|
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~------~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~  112 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH------STEVKGPVTAICSF-NG-RLVVAV-GNKLYVY  112 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE------EEEESS-EEEEEEE-TT-EEEEEE-TTEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE------EEeecCcceEhhhh-CC-EEEEee-cCEEEEE
Confidence            578888874         2 99999999884    1122111      13457889999877 33 344443 4899999


Q ss_pred             ECCCCc-eeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEccc-ceeEEEee--cCCCCeeeEEECCCCcEEEEEeC
Q 002564          502 DFKGRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFE--GHTDRITDFCFSEDGKWLLSSGM  577 (907)
Q Consensus       502 d~~~~~-~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~-~~~~~~~~--~h~~~I~~l~fspdg~~l~s~s~  577 (907)
                      ++...+ ....-..+.++........++++++|.....+.++..+. ...+..+.  .....++++.|-+|++.++.+..
T Consensus       113 ~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~  192 (321)
T PF03178_consen  113 DLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK  192 (321)
T ss_dssp             EEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET
T ss_pred             EccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC
Confidence            999888 665555555445555555578999999988888885543 22222222  23455889999877778999999


Q ss_pred             CCcEEEEEcCC-------Cc----eeeEeeeCCceEEE---EECCC--Cc------eEEEEEecCCeEE
Q 002564          578 DGSLRIWDVIL-------AR----QIDAIHVDVSITAL---SLSPN--MD------VLATAHVDQNGVY  624 (907)
Q Consensus       578 Dg~I~vwd~~~-------~~----~~~~~~~~~~v~~l---~~spd--g~------~lat~~~d~~~i~  624 (907)
                      +|.+.++..+.       +.    .+..+.....|+++   ++.|.  +.      .++.++.+| +|.
T Consensus       193 ~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G-~Ig  260 (321)
T PF03178_consen  193 DGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDG-SIG  260 (321)
T ss_dssp             TSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS--EE
T ss_pred             CCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCC-EEE
Confidence            99999998763       22    33555666678888   66662  22      377777888 466

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.95  E-value=0.0037  Score=62.20  Aligned_cols=185  Identities=11%  Similarity=0.113  Sum_probs=115.7

Q ss_pred             CCCceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEE
Q 002564          423 NPTAVKACTISACGN-FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW  501 (907)
Q Consensus       423 ~~~~v~~~~~s~~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw  501 (907)
                      -...++.+++.|+.+ ++++....+.|..++.+ |+.++.+..       .-.+..-+|++..++.++++.-.++.+.++
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l-------~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL-------DGFGDYEGITYLGNGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--------SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-------CCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence            345699999999754 66777788899999974 677776652       234678899999888888877678999999


Q ss_pred             ECCCCc------eeeeee------cCcceeEEEEeeCCCEEEEEeCCCeEEEEEccc---ceeEE--Ee------ecCCC
Q 002564          502 DFKGRD------LKSRWE------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---LRMVR--KF------EGHTD  558 (907)
Q Consensus       502 d~~~~~------~~~~~~------~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~---~~~~~--~~------~~h~~  558 (907)
                      ++....      ....+.      ....+-.++|.+.++.|.++.+..-..+|.+..   ...+.  ..      .....
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence            884321      112222      225688999999988888888777777777764   21111  11      11345


Q ss_pred             CeeeEEECCC-CcEEEEEeCCCcEEEEEcCCCceeeEeeeCC----------ceEEEEECCCCceEEEE
Q 002564          559 RITDFCFSED-GKWLLSSGMDGSLRIWDVILARQIDAIHVDV----------SITALSLSPNMDVLATA  616 (907)
Q Consensus       559 ~I~~l~fspd-g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~----------~v~~l~~spdg~~lat~  616 (907)
                      .+.+++++|. |.+++.+..+..|..+| .+|+.+..+....          ..-.++|.++|++.++.
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            5788999985 56777778889999999 7788888776543          27899999999766554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.94  E-value=0.0062  Score=64.81  Aligned_cols=218  Identities=15%  Similarity=0.186  Sum_probs=129.1

Q ss_pred             cEEEEecCCCCccccceeeEecCCCcccEEE----EcCCC--CCCEEEEEec----------CCcEEEEecCCC-----e
Q 002564          114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCI----MHPDT--YLNKVIVGSQ----------EGSLQLWNISTK-----K  172 (907)
Q Consensus       114 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~--~~~~l~~~s~----------dg~i~iwd~~~~-----~  172 (907)
                      .|++.|..+.+.    +.++.+.......++    +..+.  ...++++|+.          .|.|.++++...     +
T Consensus         3 ~i~l~d~~~~~~----~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~   78 (321)
T PF03178_consen    3 SIRLVDPTTFEV----LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK   78 (321)
T ss_dssp             EEEEEETTTSSE----EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E
T ss_pred             EEEEEeCCCCeE----EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE
Confidence            467777766665    555555543333322    22210  1267887754          289999999884     2


Q ss_pred             --EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc-eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcE
Q 002564          173 --KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI  249 (907)
Q Consensus       173 --~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I  249 (907)
                        .++.. ...++|++++.- ++ .|+++. .+.|.+|++...+ ....-..+....++++...  +. ++++|+....+
T Consensus        79 l~~i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv  151 (321)
T PF03178_consen   79 LKLIHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KN-YILVGDAMKSV  151 (321)
T ss_dssp             EEEEEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TT-EEEEEESSSSE
T ss_pred             EEEEEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--cc-EEEEEEcccCE
Confidence              22233 337889999877 33 455544 4799999999888 4444444334467777665  44 78899988888


Q ss_pred             EEEECC--CceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCC----CCc-ceeEeccCC-CCCCeEE-
Q 002564          250 SIWNLE--KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD----GDP-RLLRFRSGH-SAPPLCI-  320 (907)
Q Consensus       250 ~iwd~~--~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~----~~~-~~~~~~~~h-~~~v~~i-  320 (907)
                      .++...  ..+....-+......++++.|.+++..++.+..+|.+.++.++...    ... ++.....-| ...|+++ 
T Consensus       152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~  231 (321)
T PF03178_consen  152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR  231 (321)
T ss_dssp             EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred             EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence            877443  3334433333445678999999777799999999999999887421    111 233222222 3456666 


Q ss_pred             --EEec--CC------CEEEEEeCCCCEEEEE
Q 002564          321 --RFYA--NG------RHILSAGQDRAFRLFS  342 (907)
Q Consensus       321 --~~~~--~g------~~l~s~~~dg~i~iwd  342 (907)
                        +..|  .+      ..++.++.+|.|.+.-
T Consensus       232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~  263 (321)
T PF03178_consen  232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVLI  263 (321)
T ss_dssp             E--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred             EEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence              3334  12      2488888999998543

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.93  E-value=0.00088  Score=76.82  Aligned_cols=135  Identities=15%  Similarity=0.224  Sum_probs=97.1

Q ss_pred             cCCcEEEEecCCCeEEEEEcCCCCC-EEEEEEcC-----CCCEEEEEecCCeEEEEEccCCc--eEEEEe--ecCCCCEE
Q 002564          159 QEGSLQLWNISTKKKLYEFKGWGSS-ISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDE--ELVTFT--HSMRGAVT  228 (907)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~~h~~~-I~~l~~sp-----~~~~la~g~~dg~I~iwd~~~~~--~~~~~~--~~~~~~v~  228 (907)
                      ..+.|+-.|++.|+.+..++.|... |..++-..     +..-.++|-.+..+..||.+-..  .+..-.  -......+
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            4567999999999999999987654 66655432     12356778888999999998542  221111  11245788


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q 002564          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF  297 (907)
Q Consensus       229 ~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~  297 (907)
                      |++-+.+|  .+|+|+.+|.|++||--..+....+. +-..+|.+|..+.||+++++.+ +..+.+++.
T Consensus       582 ~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  582 CFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             EEEecCCc--eEEEEeCCCcEEeecccchhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            88888888  59999999999999954334333444 7789999999999999888777 456666654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.89  E-value=0.018  Score=60.05  Aligned_cols=315  Identities=15%  Similarity=0.143  Sum_probs=134.9

Q ss_pred             ECCCceeeeeeeccccc-----CeEEEEEecCCCEEE-EEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC
Q 002564          253 NLEKRRLQSVIREAHDN-----AIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (907)
Q Consensus       253 d~~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g  326 (907)
                      |..+|..+..+. .+..     ..+.=+|.++|+.|+ ++..||.-.+|.++..++....+....  .........++++
T Consensus        16 D~~TG~~VtrLT-~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~   92 (386)
T PF14583_consen   16 DPDTGHRVTRLT-PPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP--GDNTFGGFLSPDD   92 (386)
T ss_dssp             -TTT--EEEE-S--TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTS
T ss_pred             CCCCCceEEEec-CCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC--CCCccceEEecCC
Confidence            666776666665 2222     222335678886555 455588888887777765433333222  1223356677888


Q ss_pred             CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEe-eCCceEEEE
Q 002564          327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH-MDTAQAYVW  405 (907)
Q Consensus       327 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~w  405 (907)
                      +.++.......|+-.|+.+.+....+..+                               .+|....+.. ..+.+..+-
T Consensus        93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-------------------------------~~~~g~gt~v~n~d~t~~~g  141 (386)
T PF14583_consen   93 RALYYVKNGRSLRRVDLDTLEERVVYEVP-------------------------------DDWKGYGTWVANSDCTKLVG  141 (386)
T ss_dssp             SEEEEEETTTEEEEEETTT--EEEEEE---------------------------------TTEEEEEEEEE-TTSSEEEE
T ss_pred             CeEEEEECCCeEEEEECCcCcEEEEEECC-------------------------------cccccccceeeCCCccEEEE
Confidence            88877666677888887765433222110                               1111100000 001110000


Q ss_pred             -EeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcC
Q 002564          406 -RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS  484 (907)
Q Consensus       406 -~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  484 (907)
                       .......     .+...         +... +-+..+-....|...|+.+|+....+         .-...+..+.++|
T Consensus       142 ~e~~~~d~-----~~l~~---------~~~f-~e~~~a~p~~~i~~idl~tG~~~~v~---------~~~~wlgH~~fsP  197 (386)
T PF14583_consen  142 IEISREDW-----KPLTK---------WKGF-REFYEARPHCRIFTIDLKTGERKVVF---------EDTDWLGHVQFSP  197 (386)
T ss_dssp             EEEEGGG----------S---------HHHH-HHHHHC---EEEEEEETTT--EEEEE---------EESS-EEEEEEET
T ss_pred             EEEeehhc-----cCccc---------cHHH-HHHHhhCCCceEEEEECCCCceeEEE---------ecCccccCcccCC
Confidence             0000000     00000         0000 00000011234566677777765554         3445677889999


Q ss_pred             CCCEEEEEecCC-----eEEEEEC--CCCceeeee--ecCcceeEEEEeeCCCEEEEEeC-----CCeEEEEEcccceeE
Q 002564          485 TNTLMISAGYHG-----DIKVWDF--KGRDLKSRW--EVGCSLVKIVYHRVNGLLATVAD-----DLVIRLFDVVALRMV  550 (907)
Q Consensus       485 ~~~~l~s~~~dg-----~i~iwd~--~~~~~~~~~--~~~~~i~~~~~s~~~~~la~~~~-----dg~I~v~d~~~~~~~  550 (907)
                      ....+++-+..|     .-|||-+  .........  .....+..=-|.|||..+..-+.     +..|.-+|..+++..
T Consensus       198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~  277 (386)
T PF14583_consen  198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR  277 (386)
T ss_dssp             TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred             CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence            776665554332     1255544  333222222  22245556678999986665332     446777888887654


Q ss_pred             EEeecCCCCeeeEEECCCCcEEEEEeCCC----------------cEEEEEcCCCceeeEeeeCC-----------ceEE
Q 002564          551 RKFEGHTDRITDFCFSEDGKWLLSSGMDG----------------SLRIWDVILARQIDAIHVDV-----------SITA  603 (907)
Q Consensus       551 ~~~~~h~~~I~~l~fspdg~~l~s~s~Dg----------------~I~vwd~~~~~~~~~~~~~~-----------~v~~  603 (907)
                      ....  ......+.-++||++++-=+.|.                .|+++++..++.....++..           .=..
T Consensus       278 ~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPh  355 (386)
T PF14583_consen  278 RLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPH  355 (386)
T ss_dssp             EEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT---
T ss_pred             EEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCC
Confidence            3222  22345666789999887444332                56678888776543333211           1246


Q ss_pred             EEECCCCceEEEEEecCCeEEEee
Q 002564          604 LSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       604 l~~spdg~~lat~~~d~~~i~lW~  627 (907)
                      ..|||||++++..+.-.+...||-
T Consensus       356 p~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  356 PSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             -EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             CccCCCCCEEEEECCCCCCccEEE
Confidence            899999999888776544455554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.89  E-value=0.018  Score=63.06  Aligned_cols=194  Identities=12%  Similarity=0.121  Sum_probs=104.0

Q ss_pred             EEEEe-CCeeEEEEcccccceEEEEe-eCCEEEEEecCCcEEEEecCCCCcccc---ceeeEecCCCcccEEEEcCCCCC
Q 002564           77 IAVVK-RAHQVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLA---PVGHVKLDDKFTPTCIMHPDTYL  151 (907)
Q Consensus        77 I~vw~-~~~~~~~~~~h~~~V~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~  151 (907)
                      |.+|+ .|+.+.+..--.+.|.++.| +...|+....||.++++|+.... ...   .+.........+....+...|  
T Consensus        63 I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--  139 (410)
T PF04841_consen   63 IQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--  139 (410)
T ss_pred             EEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--
Confidence            77776 46666663222288999998 56788999999999999986444 110   011111111111111222233  


Q ss_pred             CEEEEEecCCcEEEEecCCCe-EEEEEc---CCCC------CEEE-EEEcCCCCEEEEEecCCeEEEEEccCCceEEEEe
Q 002564          152 NKVIVGSQEGSLQLWNISTKK-KLYEFK---GWGS------SISS-CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT  220 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~~-~~~~~~---~h~~------~I~~-l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~  220 (907)
                        +++-..++.+.+.+--... ....+.   ....      .... ..++.+....+....++.+.+.+-...+.   +.
T Consensus       140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~  214 (410)
T PF04841_consen  140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID  214 (410)
T ss_pred             --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence              4444455555544322211 111111   1000      0000 22333433334434444444333221111   11


Q ss_pred             ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC
Q 002564          221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP  281 (907)
Q Consensus       221 ~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~  281 (907)
                        ..+++..|+.||+|+ ++|.-..+|.+.+.+..-.+....+...-......+.|+-+..
T Consensus       215 --~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  215 --SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             --CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence              146899999999999 8888888999999987766666666634345667888876543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.88  E-value=0.015  Score=60.33  Aligned_cols=244  Identities=13%  Similarity=0.122  Sum_probs=136.7

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCccee-------
Q 002564          235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL-------  307 (907)
Q Consensus       235 dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-------  307 (907)
                      .++ .|+.|+.+| +.+++.........+.  +...|..+...++-+.|++-+ |+.+.+++++.-.......       
T Consensus         6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CCC-EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            345 788898888 9999983333333332  344499999999888877776 5999999987653322100       


Q ss_pred             ---EeccCCCCCCeEEE--EecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeec
Q 002564          308 ---RFRSGHSAPPLCIR--FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (907)
Q Consensus       308 ---~~~~~h~~~v~~i~--~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (907)
                         .........+...+  -...+...+.....+.|.+|..........                               
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-------------------------------  129 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-------------------------------  129 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc-------------------------------
Confidence               00112223344433  112333444444455777777654311100                               


Q ss_pred             ccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (907)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~  462 (907)
                                                  .. ...+.    -+..+.+++|.  ++.+++|..++ ..+.|+.++.....+
T Consensus       130 ----------------------------~~-~ke~~----lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  130 ----------------------------KL-LKEIS----LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELL  173 (275)
T ss_pred             ----------------------------ce-eEEEE----cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEe
Confidence                                        00 00000    12667788887  77888887555 888899877665544


Q ss_pred             eccccc----cccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCcee-eeeecCcceeEEEEeeCCCEEEEEeCCC
Q 002564          463 LDMSER----SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRWEVGCSLVKIVYHRVNGLLATVADDL  537 (907)
Q Consensus       463 ~~~~~~----~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~i~~~~~s~~~~~la~~~~dg  537 (907)
                      ......    .......++..+... ++.+|++.  |..-.+.|....... ..+.-...+..+++.  ..+|++.+. +
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~  247 (275)
T PF00780_consen  174 DPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-N  247 (275)
T ss_pred             CccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-C
Confidence            211100    000112233344443 45666643  334444554433222 345555677777774  456666655 5


Q ss_pred             eEEEEEcccceeEEEeecC
Q 002564          538 VIRLFDVVALRMVRKFEGH  556 (907)
Q Consensus       538 ~I~v~d~~~~~~~~~~~~h  556 (907)
                      .|.||++.++++++.+...
T Consensus       248 ~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  248 SIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             EEEEEECcCCcEEEEEECC
Confidence            5999999999999888754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.87  E-value=5.8e-06  Score=87.93  Aligned_cols=202  Identities=15%  Similarity=0.168  Sum_probs=138.3

Q ss_pred             CceEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCccc-eeeeccccccccCcCCcEEEEEEcCCC-CEEEEEe----cCC
Q 002564          425 TAVKACTISACG--NFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG----YHG  496 (907)
Q Consensus       425 ~~v~~~~~s~~g--~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~----~dg  496 (907)
                      ..+.|++..-+.  ..+++|..+|.|.+-........ ..+.       ++|....++++|.+-. ..||.|-    .|.
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t-------p~~ar~Ct~lAwneLDtn~LAagldkhrnds  129 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT-------PGYARPCTSLAWNELDTNHLAAGLDKHRNDS  129 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceec-------ccccccccccccccccHHHHHhhhhhhcccC
Confidence            456666665544  47899999999999887655443 3333       5788899999999854 4555442    456


Q ss_pred             eEEEEECCCC--ceeeeee----cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECC-CC
Q 002564          497 DIKVWDFKGR--DLKSRWE----VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DG  569 (907)
Q Consensus       497 ~i~iwd~~~~--~~~~~~~----~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp-dg  569 (907)
                      .+.|||+.++  .+.....    ......+++|-.+.+++.+|.....+.++|++.. +.+.-.-.+..+..+..+| .+
T Consensus       130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSP  208 (783)
T ss_pred             CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCC
Confidence            7999999877  2222221    2245668889999999999999999999998732 1111112334566677888 67


Q ss_pred             cEEEEEeCCCcEEEEEcC-C-CceeeEeeeC-----CceEEEEECCCC-ceEEEEEecCCeEEEeecccccccC
Q 002564          570 KWLLSSGMDGSLRIWDVI-L-ARQIDAIHVD-----VSITALSLSPNM-DVLATAHVDQNGVYLWVNRCMFSGD  635 (907)
Q Consensus       570 ~~l~s~s~Dg~I~vwd~~-~-~~~~~~~~~~-----~~v~~l~~spdg-~~lat~~~d~~~i~lW~~~~~~~~~  635 (907)
                      .|+++-. ||.|.+||.. . ..++..+...     ..+..++|+|.. ..|++...|..+|++++++..-.+.
T Consensus       209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~  281 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEG  281 (783)
T ss_pred             Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcc
Confidence            7888765 9999999932 1 2233333222     238999999954 4678888888899999987655544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.032  Score=60.67  Aligned_cols=285  Identities=14%  Similarity=0.116  Sum_probs=179.0

Q ss_pred             EEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC-CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564          163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (907)
Q Consensus       163 i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d-g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~  241 (907)
                      +.+++..+.+....+..+. ....+...+++..+.+.... ..+...+.. .................++.++++....+
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv   90 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV   90 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence            6667766666665555433 56677888888655544332 245554444 22222211111134567888888886777


Q ss_pred             EEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCC-CcEEEEEccCCCCCcceeEeccCCCCCCeEE
Q 002564          242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI  320 (907)
Q Consensus       242 sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i  320 (907)
                      ....++.|.+.|..+.+.......+.  ....+++.++++.+..+... +.-.++.++..+.  ........-..+ ..+
T Consensus        91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--~~~~~~~vG~~P-~~~  165 (381)
T COG3391          91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--KVTATIPVGNTP-TGV  165 (381)
T ss_pred             ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC--eEEEEEecCCCc-ceE
Confidence            77778999999988888888877444  67899999999877776653 2334444444433  233332222233 899


Q ss_pred             EEecCCCEEEEEe-CCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCC
Q 002564          321 RFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (907)
Q Consensus       321 ~~~~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  399 (907)
                      ++.|+|..++.+. .++.+.+.+.......+ -..                                             
T Consensus       166 a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~---------------------------------------------  199 (381)
T COG3391         166 AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV---------------------------------------------  199 (381)
T ss_pred             EECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc---------------------------------------------
Confidence            9999999777665 67888888854332221 000                                             


Q ss_pred             ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccceeeeccccccccCcCCc
Q 002564          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGE  476 (907)
Q Consensus       400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~  476 (907)
                                        ............+.++++|+++.+....   +.+...|..++.....-..      .+.. .
T Consensus       200 ------------------~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~------~~~~-~  254 (381)
T COG3391         200 ------------------GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP------VGSG-A  254 (381)
T ss_pred             ------------------ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc------cccC-C
Confidence                              0000111445678899999977766554   5899999988877665210      1222 5


Q ss_pred             EEEEEEcCCCCEEEEEe-cCCeEEEEECCCCceeeeeecCcc----eeEEEEee
Q 002564          477 VVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCS----LVKIVYHR  525 (907)
Q Consensus       477 v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~----i~~~~~s~  525 (907)
                      ...+.++|+|+.+.+.. ..+.+.+-|..+............    +..+++.+
T Consensus       255 ~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~  308 (381)
T COG3391         255 PRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP  308 (381)
T ss_pred             CCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence            67789999999888875 448899999888777776654432    55555554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.85  E-value=0.00044  Score=75.01  Aligned_cols=186  Identities=15%  Similarity=0.112  Sum_probs=124.6

Q ss_pred             CceEEEEEcCCCCEEEEEe---CC-CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCe--
Q 002564          425 TAVKACTISACGNFAVLGT---AG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGD--  497 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~---~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~--  497 (907)
                      ..+..-.|+|++..++.-+   .. ..+.++++.++.......         ..+.-..-+|+|||+.|+-+. .||.  
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---------~~g~~~~P~fspDG~~l~f~~~rdg~~~  263 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---------FNGNNGAPAFSPDGSKLAFSSSRDGSPD  263 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---------cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence            4566678899987765442   22 468999999887766553         233445568999998776554 5665  


Q ss_pred             EEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCC---eEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEE
Q 002564          498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS  574 (907)
Q Consensus       498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s  574 (907)
                      |.+.|+.++...+.....+.-+.-.|+|||+.++..++.+   .|.++|.+..... .+....+.-..-.|||||++|+.
T Consensus       264 iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i~~  342 (425)
T COG0823         264 IYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKIVF  342 (425)
T ss_pred             EEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCccCCCCCCEEEE
Confidence            5666777777544233334444678999999988876643   5777787766553 33323222226789999999987


Q ss_pred             EeC-CCc--EEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecC
Q 002564          575 SGM-DGS--LRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ  620 (907)
Q Consensus       575 ~s~-Dg~--I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~  620 (907)
                      .+. +|.  |.+.|+.++..++.+........-.|.|+|+.+...+..+
T Consensus       343 ~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         343 ESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             EeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence            764 344  7777777776666666555566788899998888776544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.72  E-value=0.001  Score=72.20  Aligned_cols=167  Identities=18%  Similarity=0.185  Sum_probs=111.3

Q ss_pred             CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE---ecC-CeEEEEEccCCceEEEEeecCCCCEEEEEEecCC
Q 002564          161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG---CSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG  236 (907)
Q Consensus       161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g---~~d-g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg  236 (907)
                      ..+.+-|.. |...+.+......+..-+|+|+++.++..   ... ..+.++++.+++.......  .+.-...+|+|||
T Consensus       173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG  249 (425)
T COG0823         173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDG  249 (425)
T ss_pred             ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCC
Confidence            345555544 66666666667778888999999876644   222 4699999998887666653  3567788999999


Q ss_pred             CCEEEEEeCCCc--EEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCC
Q 002564          237 QPLLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH  313 (907)
Q Consensus       237 ~~~l~sg~~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h  313 (907)
                      +.++++...||.  |.+.|+.++.... +. .-.+.-..-.|+|||+.++..+ ..|.-.||.++......+.+..   .
T Consensus       250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~---~  324 (425)
T COG0823         250 SKLAFSSSRDGSPDIYLMDLDGKNLPR-LT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF---S  324 (425)
T ss_pred             CEEEEEECCCCCccEEEEcCCCCccee-cc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec---c
Confidence            977777777775  5556777766333 43 2223333778999999777654 4677788877766544333322   2


Q ss_pred             CCCCeEEEEecCCCEEEEEeCC
Q 002564          314 SAPPLCIRFYANGRHILSAGQD  335 (907)
Q Consensus       314 ~~~v~~i~~~~~g~~l~s~~~d  335 (907)
                      ...-..-.|+|||++++..+..
T Consensus       325 ~~~~~~p~~SpdG~~i~~~~~~  346 (425)
T COG0823         325 GGGNSNPVWSPDGDKIVFESSS  346 (425)
T ss_pred             CCCCcCccCCCCCCEEEEEecc
Confidence            2222267789999999877743

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.63  E-value=3.3e-05  Score=82.39  Aligned_cols=205  Identities=17%  Similarity=0.185  Sum_probs=130.3

Q ss_pred             CEEEEEEecCC-CCEEEEEeCCCcEEEEECCCceee-eeeecccccCeEEEEEecC-CCEEEEEc----CCCcEEEEEcc
Q 002564          226 AVTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQ-SVIREAHDNAIISLHFFAN-EPVLMSAS----ADNSIKMWIFD  298 (907)
Q Consensus       226 ~v~~l~fs~dg-~~~l~sg~~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~-~~~l~s~~----~d~~i~vw~~~  298 (907)
                      .+.|+++.-+. +.++++|..+|.|.+-......-. ..+..+|....++++|.+- .+.||.|-    .|..+.+||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            45666655443 358999999999999988765433 3344478899999999984 45666653    36789999988


Q ss_pred             CCCCCcceeEecc-CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCcee
Q 002564          299 TTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI  377 (907)
Q Consensus       299 ~~~~~~~~~~~~~-~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  377 (907)
                      ..-..+.....+. +......+++|..+.+.+++|...+.+.++|++........                         
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s-------------------------  192 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS-------------------------  192 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-------------------------
Confidence            7622222222222 24455668899988889999999999999998632211100                         


Q ss_pred             EeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEeCC-C
Q 002564          378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQ-S  455 (907)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~i~d~~-~  455 (907)
                                                                  -....+..+.++| .+++++.-. +|.|.+||.. .
T Consensus       193 --------------------------------------------vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn  227 (783)
T KOG1008|consen  193 --------------------------------------------VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN  227 (783)
T ss_pred             --------------------------------------------hhhhhcccceecCCCCCceeccc-cCceeeccchhh
Confidence                                                        0013456677788 677776654 9999999942 1


Q ss_pred             -CccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEe-cCCeEEEEECC
Q 002564          456 -GISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG-YHGDIKVWDFK  504 (907)
Q Consensus       456 -~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~-~dg~i~iwd~~  504 (907)
                       ..+......    ........+..++|.|.. ..+++.. ..++|+.+|+.
T Consensus       228 ienpl~~i~~----~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  228 IENPLQIILR----NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hccHHHHHhh----CCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence             111111110    001223358999999954 3445554 55789999875

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.63  E-value=0.0026  Score=73.03  Aligned_cols=191  Identities=18%  Similarity=0.196  Sum_probs=122.8

Q ss_pred             CCcceEEEEEe--cCeEEEEEcCeEEEEeCCe-e-E---------EEEcccc-cceEEEEe--eCCEEEEE-ecCCcEEE
Q 002564           55 LPKKIRALASY--RDYTFAAYGNHIAVVKRAH-Q-V---------ATWSRHS-AKVNLLLL--FGEHILSI-DIDGNMFI  117 (907)
Q Consensus        55 ~~~~I~~la~~--~~~~~~a~g~~I~vw~~~~-~-~---------~~~~~h~-~~V~~l~~--~g~~l~s~-~~dg~v~v  117 (907)
                      ....+.+|++.  .|..|++-|+.|-|++... . +         .+..|.. .+-..+.-  +.+.|+.- ...+.|.-
T Consensus       429 ~~~~n~~Lavg~k~DrSfVvRg~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~  508 (794)
T PF08553_consen  429 DGEKNSSLAVGYKNDRSFVVRGSKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLYK  508 (794)
T ss_pred             CCCccceeEeeeccCceEEECCCcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceEE
Confidence            35567778877  5899999999999997541 1 1         1111110 01111111  12333332 34567888


Q ss_pred             EecCCCCccccceeeEecCCCcccEEEEcCCCC-----CCEEEEEecCCcEEEEecCCC--eEEEE-Ec--CCCCCEEEE
Q 002564          118 WAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTY-----LNKVIVGSQEGSLQLWNISTK--KKLYE-FK--GWGSSISSC  187 (907)
Q Consensus       118 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~~l~~~s~dg~i~iwd~~~~--~~~~~-~~--~h~~~I~~l  187 (907)
                      -|++.|+.    +.....+.... ..-+.|+..     ....++|-.++.+..||.+-.  +++.. .+  ......+|+
T Consensus       509 mDLe~GKV----V~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~  583 (794)
T PF08553_consen  509 MDLERGKV----VEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF  583 (794)
T ss_pred             EecCCCcE----EEEeecCCCcc-eeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence            89999998    88888776542 333445421     134677878888999998743  33321 11  235667888


Q ss_pred             EEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 002564          188 VSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL  254 (907)
Q Consensus       188 ~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~  254 (907)
                      +-+.+| +||+|+.+|.||+||- .|+.-.+...+-..+|..+..+.||+++||||  +..|.+++.
T Consensus       584 aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t  646 (794)
T PF08553_consen  584 ATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT  646 (794)
T ss_pred             EecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence            888877 7999999999999994 45544444444468999999999999666665  467888775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.63  E-value=0.07  Score=59.21  Aligned_cols=116  Identities=15%  Similarity=0.190  Sum_probs=70.5

Q ss_pred             EEEEEEcCCCCEEEEEe-cC----CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeC----------CCc
Q 002564          184 ISSCVSSPALDVVAVGC-SD----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS----------SGV  248 (907)
Q Consensus       184 I~~l~~sp~~~~la~g~-~d----g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~----------dg~  248 (907)
                      +....+||+++++|.+- ..    ..++++|+.+|+.+......  .....+.|.+|++.++.+...          ...
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34678999999998763 33    45999999999876543222  122349999998845555432          224


Q ss_pred             EEEEECCCceee--eeeecccccC-eEEEEEecCCCEEEEEcC-CCc-EEEEEccCCC
Q 002564          249 ISIWNLEKRRLQ--SVIREAHDNA-IISLHFFANEPVLMSASA-DNS-IKMWIFDTTD  301 (907)
Q Consensus       249 I~iwd~~~~~~~--~~~~~~h~~~-V~~l~~~~~~~~l~s~~~-d~~-i~vw~~~~~~  301 (907)
                      |..|.+.+....  ..+....... ...+..++++++++.... ... -.+|-++...
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            788888777433  3333122222 678899999998775433 223 3455444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.00024  Score=76.11  Aligned_cols=94  Identities=18%  Similarity=0.275  Sum_probs=83.4

Q ss_pred             cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCee-eEEECCCCcEEEEEeCCCcEEEEEcCCCcee
Q 002564          514 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT-DFCFSEDGKWLLSSGMDGSLRIWDVILARQI  592 (907)
Q Consensus       514 ~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~-~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~  592 (907)
                      ....+..+.|+|.-.++|.+..+|.|.+..++ ++.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.+|..+
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            44678889999999999999999999999988 888888887877777 9999999999999999999999999999988


Q ss_pred             eE--eeeCCceEEEEECC
Q 002564          593 DA--IHVDVSITALSLSP  608 (907)
Q Consensus       593 ~~--~~~~~~v~~l~~sp  608 (907)
                      ..  +....+|.++.|+|
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            77  55567799999974

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.61  E-value=0.057  Score=59.92  Aligned_cols=104  Identities=13%  Similarity=0.177  Sum_probs=56.7

Q ss_pred             EEEEEEecCCCCEEEEEeCCC----cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCC-----------c
Q 002564          227 VTALAFSSDGQPLLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-----------S  291 (907)
Q Consensus       227 v~~l~fs~dg~~~l~sg~~dg----~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-----------~  291 (907)
                      +...+++|||+.++++-+..|    .|+++|+++++.+...-  .......+.|.+++..|+....+.           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            446788999994444444444    59999999997765432  111223499999988776665433           2


Q ss_pred             EEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEE
Q 002564          292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA  332 (907)
Q Consensus       292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~  332 (907)
                      |+.|.+.+......++.....+......+..++|+++++..
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~  244 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFIS  244 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEE
Confidence            45554443322212222211111113456666677666543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.57  E-value=0.039  Score=57.30  Aligned_cols=195  Identities=9%  Similarity=0.069  Sum_probs=115.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccc------ccccCcCCcEEEEE--EcCCCCEEEEEecCC
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE------RSNYAHNGEVVGVA--CDSTNTLMISAGYHG  496 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~h~~~v~~l~--~s~~~~~l~s~~~dg  496 (907)
                      ..|..+.+.++-+.+++-+ ||.+++|++..-...........      .........+...+  -...+...+......
T Consensus        36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk  114 (275)
T PF00780_consen   36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK  114 (275)
T ss_pred             ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence            3488888888777766654 49999999876554442110000      00012233455555  222333334444446


Q ss_pred             eEEEEECCCC-----ceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecC------------CCC
Q 002564          497 DIKVWDFKGR-----DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH------------TDR  559 (907)
Q Consensus       497 ~i~iwd~~~~-----~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h------------~~~  559 (907)
                      .|.+|.....     +..+.+.....+..++|.  ++.+++|..+ ...+.|+.++.....+...            ..+
T Consensus       115 ~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~  191 (275)
T PF00780_consen  115 KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKP  191 (275)
T ss_pred             EEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCc
Confidence            8888877653     566778888999999998  6778888754 4788899877654433211            123


Q ss_pred             eeeEEECCCCcEEEEEeCCCcEEEEEcCCCceee--EeeeCCceEEEEECCCCceEEEEEecCCeEEEeecccc
Q 002564          560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID--AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM  631 (907)
Q Consensus       560 I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~--~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~  631 (907)
                      +..+.. +++.+|++-  |..-.+-|. .|+..+  .+.-...+.++++  ...||++.+.+  +|.||++...
T Consensus       192 ~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~--~iEV~~~~~~  257 (275)
T PF00780_consen  192 LGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSN--SIEVRSLETG  257 (275)
T ss_pred             eEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcCCchhEEEE--ECCEEEEECCC--EEEEEECcCC
Confidence            333333 345677653  333333343 455443  4555666777777  44688887775  4999997543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.0004  Score=74.56  Aligned_cols=95  Identities=23%  Similarity=0.297  Sum_probs=80.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEE-EEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVT-ALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~-~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~  259 (907)
                      ...|.-+.|+|.-+++|++..+|.|.++.+. .+.+.++..+ ...++ +++|.|||+ ++|+|-.||+|++.|.+++..
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p-~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP-GENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC-CCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence            4568889999999999999999999999988 7888888855 45565 999999999 999999999999999999987


Q ss_pred             eeeeecccccCeEEEEEec
Q 002564          260 QSVIREAHDNAIISLHFFA  278 (907)
Q Consensus       260 ~~~~~~~h~~~V~~l~~~~  278 (907)
                      +......-...|.++.|.+
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            7774434566788888863

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.49  E-value=0.085  Score=56.68  Aligned_cols=90  Identities=16%  Similarity=0.210  Sum_probs=60.2

Q ss_pred             EEEEcCCCCEEEEEecCCeEEE---EEcc-CC----ceEEEEe----ecCCCCEEEEEEec-----------CCCCEEEE
Q 002564          186 SCVSSPALDVVAVGCSDGKIHV---HNVR-YD----EELVTFT----HSMRGAVTALAFSS-----------DGQPLLAS  242 (907)
Q Consensus       186 ~l~~sp~~~~la~g~~dg~I~i---wd~~-~~----~~~~~~~----~~~~~~v~~l~fs~-----------dg~~~l~s  242 (907)
                      .++.+|++++||.|..+..+.+   |+.. .+    .......    ......|+++.+-|           |.. .+++
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~-~I~V   84 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWT-CIAV   84 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcE-EEEE
Confidence            4678999999999988776665   5331 11    1111111    11124677777654           344 8999


Q ss_pred             EeCCCcEEEEECCCceeeeeeecccccCeEEEEEec
Q 002564          243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA  278 (907)
Q Consensus       243 g~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~  278 (907)
                      |..+|.|++|.. +|.++..-. -|..+|..+.+..
T Consensus        85 G~ssG~vrfyte-~G~LL~~Q~-~h~~pV~~ik~~~  118 (415)
T PF14655_consen   85 GTSSGYVRFYTE-NGVLLLSQL-LHEEPVLKIKCRS  118 (415)
T ss_pred             EecccEEEEEec-cchHHHHHh-cCccceEEEEecc
Confidence            999999999995 666655554 6888898888754

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.45  E-value=0.025  Score=58.53  Aligned_cols=238  Identities=16%  Similarity=0.126  Sum_probs=132.1

Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeE
Q 002564          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR  308 (907)
Q Consensus       229 ~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~  308 (907)
                      +..|.++...++.+--..+.|.-|+..+++.....   +.+.+.++.....+..|+++.  ..+.+++.+..... ..+.
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~-t~~~  102 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKI-TLLA  102 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEc--cccEEEeccCCcee-EEec
Confidence            34566777645666667889999998866443322   334445555555555666664  34566666332210 1111


Q ss_pred             e-ccCC-CCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccc
Q 002564          309 F-RSGH-SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE  386 (907)
Q Consensus       309 ~-~~~h-~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  386 (907)
                      . ..+. ....+.+...|+|.+-++....     ++  .+...                                     
T Consensus       103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-----~~--~~~~~-------------------------------------  138 (307)
T COG3386         103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGY-----FD--LGKSE-------------------------------------  138 (307)
T ss_pred             cccCCCCcCCCCceeEcCCCCEEEeCCCc-----cc--cCccc-------------------------------------
Confidence            1 1121 2456677778887655543321     11  00000                                     


Q ss_pred             ccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC-CcEEEEeCCC--Cccceeee
Q 002564          387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQS--GISRGSYL  463 (907)
Q Consensus       387 ~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g~i~i~d~~~--~~~~~~~~  463 (907)
                               ....+  .+|.+...   ....+....+-.....++||||++.+.+.... +.|+.|++..  +.....  
T Consensus       139 ---------~~~~G--~lyr~~p~---g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~--  202 (307)
T COG3386         139 ---------ERPTG--SLYRVDPD---GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR--  202 (307)
T ss_pred             ---------cCCcc--eEEEEcCC---CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc--
Confidence                     00011  22222210   11111111223456789999999888777654 8899988763  211111  


Q ss_pred             ccccccccCcCCcEEEEEEcCCCCEEEEEecCC-eEEEEECCCCceeeeeecC-cceeEEEEee-CCCEEEEEe
Q 002564          464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVA  534 (907)
Q Consensus       464 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~~  534 (907)
                       ..........+..-+++.+.+|.+.+++..+| .|.+|+.. ++++..+..+ ..+++++|-- +.+.|.+.+
T Consensus       203 -~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         203 -RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             -ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence             00001123557788899999998886555554 99999988 9999998888 7788888853 344444443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.42  E-value=0.097  Score=55.23  Aligned_cols=184  Identities=15%  Similarity=0.202  Sum_probs=88.2

Q ss_pred             EEEEcCCCCEEEEEe--C----CCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec--------
Q 002564          429 ACTISACGNFAVLGT--A----GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY--------  494 (907)
Q Consensus       429 ~~~~s~~g~~l~~g~--~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--------  494 (907)
                      .+..-|+|+.++++-  .    -|.+.++|-.+..........     .+....-..+.+.|..+.++|+..        
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~-----~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~  208 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKD-----RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEK  208 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB------TT------EEEETTTTEEEE-B---HHHHTT
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccC-----CCCCCCCCCeEEcCCCCEEEEeccCChhhccc
Confidence            344456676666542  2    246777887776666665421     011233456677888888887743        


Q ss_pred             ------------CCeEEEEECCCCceeeeeecC---cceeEEEEeeC--CC--EEEEEeCCCeEEEEEcccce----eEE
Q 002564          495 ------------HGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRV--NG--LLATVADDLVIRLFDVVALR----MVR  551 (907)
Q Consensus       495 ------------dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~--~~--~la~~~~dg~I~v~d~~~~~----~~~  551 (907)
                                  ..++.+||+.+.+.++++...   .....+.|..+  ..  ++.++......++|..+.++    .+.
T Consensus       209 Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi  288 (461)
T PF05694_consen  209 GFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVI  288 (461)
T ss_dssp             ---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEE
T ss_pred             CCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEE
Confidence                        357999999999999999886   34556666554  33  33333333333344333332    122


Q ss_pred             Eeec-----C------------CCCeeeEEECCCCcEEEEEe-CCCcEEEEEcCCC---ceeeEeeeCC-----------
Q 002564          552 KFEG-----H------------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA---RQIDAIHVDV-----------  599 (907)
Q Consensus       552 ~~~~-----h------------~~~I~~l~fspdg~~l~s~s-~Dg~I~vwd~~~~---~~~~~~~~~~-----------  599 (907)
                      .+..     -            ..-|++|..|.|.++|..+. .+|.||.||+..-   +++..+....           
T Consensus       289 ~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~  368 (461)
T PF05694_consen  289 DIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVK  368 (461)
T ss_dssp             EE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-
T ss_pred             ECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccc
Confidence            2221     0            24489999999999997555 7899999999763   3444433221           


Q ss_pred             ------ceEEEEECCCCceEEEEE
Q 002564          600 ------SITALSLSPNMDVLATAH  617 (907)
Q Consensus       600 ------~v~~l~~spdg~~lat~~  617 (907)
                            ...-+..|-||+.|..+.
T Consensus       369 g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  369 GKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -----S----EEE-TTSSEEEEE-
T ss_pred             ccccCCCCCeEEEccCCeEEEEEe
Confidence                  235567777887777654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.30  E-value=0.09  Score=51.47  Aligned_cols=274  Identities=12%  Similarity=0.071  Sum_probs=151.1

Q ss_pred             CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCc-EEEEECCCceeeeeeecccccC--eEEEEEecCCCEEEEEcCC
Q 002564          213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV-ISIWNLEKRRLQSVIREAHDNA--IISLHFFANEPVLMSASAD  289 (907)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~-I~iwd~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~~~d  289 (907)
                      |+.+......  ..-..++|+|....-++.+-.-|+ ..++|....+...++. ...+.  --.-.|+|||.+|...-.|
T Consensus        58 Gk~v~~~~lp--aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYATEnd  134 (366)
T COG3490          58 GKIVFATALP--ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYATEND  134 (366)
T ss_pred             Cceeeeeecc--cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEeecCC
Confidence            4555444433  456678888887656666665554 5688988887666654 11111  1234689999988876543


Q ss_pred             -----CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEE-EceecccceeechhhhhHHHhh
Q 002564          290 -----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF-SVIQDQQSRELSQRHVAKRARK  363 (907)
Q Consensus       290 -----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~  363 (907)
                           |.|-+||.+..   ...+..+..|.-.+..+.+.+||+.++.+..  -|..- +.-..+.+..            
T Consensus       135 fd~~rGViGvYd~r~~---fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld------------  197 (366)
T COG3490         135 FDPNRGVIGVYDAREG---FQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD------------  197 (366)
T ss_pred             CCCCCceEEEEecccc---cceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh------------
Confidence                 78999988732   3455667788888999999999999887643  23332 1111000000            


Q ss_pred             ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564          364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT  443 (907)
Q Consensus       364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  443 (907)
                                                       .-...+.+.|..++.+.++...+...+...+..+++.+||...+-+-
T Consensus       198 ---------------------------------sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         198 ---------------------------------SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             ---------------------------------hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence                                             00122223332233322222222233456788899998887666543


Q ss_pred             CCCcE----EEE-eCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCceeeeeecCcc
Q 002564          444 AGGWI----ERF-NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCS  517 (907)
Q Consensus       444 ~dg~i----~i~-d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~  517 (907)
                      ..|.-    -+. -...++....+. .+......-...|-+++.+.+..+++..+ ..+...+||..++..+..-.... 
T Consensus       245 y~G~~~d~ppLvg~~~~g~~l~~~~-~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-  322 (366)
T COG3490         245 YRGPRNDLPPLVGHFRKGEPLEFLD-LPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-  322 (366)
T ss_pred             eeCCCccCCcceeeccCCCcCcccC-CCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-
Confidence            32210    000 111222222221 11111112334577888876555555444 56678899999998876544331 


Q ss_pred             eeEEEEeeCCCEEEEEeCCCeEEEEE
Q 002564          518 LVKIVYHRVNGLLATVADDLVIRLFD  543 (907)
Q Consensus       518 i~~~~~s~~~~~la~~~~dg~I~v~d  543 (907)
                        +.-.-+...-+++.+.+|.+..+.
T Consensus       323 --aaGva~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         323 --AAGVAAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             --cccceeccCceEEecCCceEEecc
Confidence              112223344466666778887763

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.0098  Score=62.88  Aligned_cols=142  Identities=17%  Similarity=0.211  Sum_probs=101.7

Q ss_pred             CEEE-EEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCC-------EEEEEecCCeEEEEEccCCce-EEEEeec
Q 002564          152 NKVI-VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-------VVAVGCSDGKIHVHNVRYDEE-LVTFTHS  222 (907)
Q Consensus       152 ~~l~-~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~-------~la~g~~dg~I~iwd~~~~~~-~~~~~~~  222 (907)
                      +.|+ .+.....++-.|++.|+.+.+.+-+.. |+-+.+.|+.+       .-++|-.|..|.-||.+-... .......
T Consensus       346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~  424 (644)
T KOG2395|consen  346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS  424 (644)
T ss_pred             ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence            3444 455566788999999999999998766 88888888754       234677888999999873222 2222221


Q ss_pred             C----CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564          223 M----RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (907)
Q Consensus       223 ~----~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (907)
                      +    .....|.+-..+|  ++|+|+.+|.|++||- .++...+...+-..+|..+..+.+|++++..+ +..+.+-+..
T Consensus       425 kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  425 KQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             cccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            1    2356677666666  6999999999999997 55555554448899999999999999888776 4555555443

>smart00320 WD40 WD40 repeats

Probab=97.26  E-value=0.00081  Score=44.84  Aligned_cols=39  Identities=38%  Similarity=0.841  Sum_probs=34.9

Q ss_pred             ceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564          547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (907)
Q Consensus       547 ~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd  585 (907)
                      +++...+.+|...|.++.|+++++++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355677788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.25  E-value=0.12  Score=53.57  Aligned_cols=206  Identities=13%  Similarity=0.076  Sum_probs=120.2

Q ss_pred             CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcC-----CCCCEEE
Q 002564          112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-----WGSSISS  186 (907)
Q Consensus       112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----h~~~I~~  186 (907)
                      .+.|.-|+..+++.     ..+..+........+...+    .++++..| +.+++.+++..+..+..     .....+.
T Consensus        46 ~~~i~r~~~~~g~~-----~~~~~p~~~~~~~~~d~~g----~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND  115 (307)
T COG3386          46 GGRIHRLDPETGKK-----RVFPSPGGFSSGALIDAGG----RLIACEHG-VRLLDPDTGGKITLLAEPEDGLPLNRPND  115 (307)
T ss_pred             CCeEEEecCCcCce-----EEEECCCCcccceeecCCC----eEEEEccc-cEEEeccCCceeEEeccccCCCCcCCCCc
Confidence            55677777765544     4455555555555566665    44444555 77888776666433321     1245567


Q ss_pred             EEEcCCCCEEEEEec---------CCeEEEEEcc-CCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 002564          187 CVSSPALDVVAVGCS---------DGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK  256 (907)
Q Consensus       187 l~~sp~~~~la~g~~---------dg~I~iwd~~-~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~  256 (907)
                      +...|+|.+.+....         ...-.+|-+. .+..+..+..+ -..-+.|+||||++.+.++=+..+.|.-|++..
T Consensus       116 ~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~-~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         116 GVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDD-LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             eeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCc-EEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence            788899887665433         0112455554 44444444332 345678999999984555555668898888762


Q ss_pred             --c----eeeeeeecccccCeEEEEEecCCCEEEEEcCCC-cEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCE
Q 002564          257 --R----RLQSVIREAHDNAIISLHFFANEPVLMSASADN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRH  328 (907)
Q Consensus       257 --~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~  328 (907)
                        +    +..........+..-.++...+|.+-+++..+| .|..|+.+ +    +++....-....+++++|-. +.+.
T Consensus       195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G----~l~~~i~lP~~~~t~~~FgG~~~~~  269 (307)
T COG3386         195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G----KLLGEIKLPVKRPTNPAFGGPDLNT  269 (307)
T ss_pred             ccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C----cEEEEEECCCCCCccceEeCCCcCE
Confidence              2    111111112345566777777887665444443 78888654 2    45555555557788888875 4455


Q ss_pred             EEEEe
Q 002564          329 ILSAG  333 (907)
Q Consensus       329 l~s~~  333 (907)
                      |+..+
T Consensus       270 L~iTs  274 (307)
T COG3386         270 LYITS  274 (307)
T ss_pred             EEEEe
Confidence            55443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.24  E-value=0.24  Score=52.67  Aligned_cols=73  Identities=19%  Similarity=0.198  Sum_probs=46.0

Q ss_pred             eeeecCcceeEEEEeeC-------CCEEEEEeCCCeEEEEEcccceeEE---E-eecCCCCeeeEEECCCCcEEEEEeCC
Q 002564          510 SRWEVGCSLVKIVYHRV-------NGLLATVADDLVIRLFDVVALRMVR---K-FEGHTDRITDFCFSEDGKWLLSSGMD  578 (907)
Q Consensus       510 ~~~~~~~~i~~~~~s~~-------~~~la~~~~dg~I~v~d~~~~~~~~---~-~~~h~~~I~~l~fspdg~~l~s~s~D  578 (907)
                      ..+..+..+..+.|.+.       |.++++....+.|....+.....+.   . +.....++.++++.|||.+.++.+.+
T Consensus       247 ~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~  326 (331)
T PF07995_consen  247 FAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD  326 (331)
T ss_dssp             EEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred             eeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence            33444566677777643       4566666667788888887553222   2 22344589999999999998888888


Q ss_pred             CcEE
Q 002564          579 GSLR  582 (907)
Q Consensus       579 g~I~  582 (907)
                      |.|.
T Consensus       327 G~iy  330 (331)
T PF07995_consen  327 GKIY  330 (331)
T ss_dssp             TTEE
T ss_pred             CeEe
Confidence            8763

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.23  E-value=0.016  Score=48.55  Aligned_cols=98  Identities=23%  Similarity=0.372  Sum_probs=71.3

Q ss_pred             EcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCC
Q 002564          145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR  224 (907)
Q Consensus       145 ~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~  224 (907)
                      +.-++. +.|++|+.|..|++|+  ....+.++.. .+.|++++-... ..++.+..+|+|-+|+-  ...+...+.  +
T Consensus        10 ~d~dg~-~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKS--K   80 (111)
T PF14783_consen   10 FDGDGE-NELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKS--K   80 (111)
T ss_pred             cCCCCc-ceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeecc--C
Confidence            344444 7899999999999997  5578888887 677888887776 56899999999999975  233444433  3


Q ss_pred             CCEEEEEEe---cCCCCEEEEEeCCCcEEE
Q 002564          225 GAVTALAFS---SDGQPLLASGASSGVISI  251 (907)
Q Consensus       225 ~~v~~l~fs---~dg~~~l~sg~~dg~I~i  251 (907)
                      ..++++.+.   .||..-|++|-.+|.|-+
T Consensus        81 ~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   81 NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            446666654   355567889988888743

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.22  E-value=0.76  Score=54.13  Aligned_cols=110  Identities=13%  Similarity=0.146  Sum_probs=75.6

Q ss_pred             CEEEEEecCCcEEEEecCCCeEEEEEcCCCCC--------EEEEEEc----------------CCCCEEEEEecCCeEEE
Q 002564          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS--------ISSCVSS----------------PALDVVAVGCSDGKIHV  207 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~--------I~~l~~s----------------p~~~~la~g~~dg~I~i  207 (907)
                      +.+++++.++.|.-.|..+|+.+..+......        ...+++.                ..+..|+.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            57899999999999999999999888643211        1112221                13457888999999999


Q ss_pred             EEccCCceEEEEeecCCCCEE-------------EEEEec---CCCCEEEEEeC----------CCcEEEEECCCceeee
Q 002564          208 HNVRYDEELVTFTHSMRGAVT-------------ALAFSS---DGQPLLASGAS----------SGVISIWNLEKRRLQS  261 (907)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~v~-------------~l~fs~---dg~~~l~sg~~----------dg~I~iwd~~~~~~~~  261 (907)
                      .|.++|+.+..+...  +.|.             .+.-.|   ++  .+++|+.          +|.|+-+|.++|+.+-
T Consensus       275 LDA~TGk~~W~fg~~--G~vdl~~~~g~~~~g~~~~ts~P~V~~g--~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       275 LDADTGKLCEDFGNN--GTVDLTAGMGTTPPGYYYPTSPPLVAGT--TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EECCCCCEEEEecCC--CceeeecccCcCCCcccccccCCEEECC--EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            999999998876432  2110             011111   33  4555642          6889999999999988


Q ss_pred             eeec
Q 002564          262 VIRE  265 (907)
Q Consensus       262 ~~~~  265 (907)
                      .+..
T Consensus       351 ~~~~  354 (764)
T TIGR03074       351 AWDP  354 (764)
T ss_pred             EEec
Confidence            8763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.19  E-value=0.027  Score=47.27  Aligned_cols=101  Identities=22%  Similarity=0.307  Sum_probs=70.9

Q ss_pred             EEEEEEe---cCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564          227 VTALAFS---SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (907)
Q Consensus       227 v~~l~fs---~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (907)
                      |++|++.   .||..-|++|+.|..|++|+-  ...+..+.  -...|+++.-... ..++.+-.+|+|-+|+-.     
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-----   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS-----   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeCc-----
Confidence            5666654   466678999999999999984  45666665  4567888888776 478899999999999532     


Q ss_pred             cceeEeccCCCCCCeEEEEec-C--C-CEEEEEeCCCCEE
Q 002564          304 PRLLRFRSGHSAPPLCIRFYA-N--G-RHILSAGQDRAFR  339 (907)
Q Consensus       304 ~~~~~~~~~h~~~v~~i~~~~-~--g-~~l~s~~~dg~i~  339 (907)
                      .++.+....  ..+.++.+.. +  | ..|++|-.+|.|-
T Consensus        72 ~RlWRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 QRLWRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ceeeeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            134443333  3477777765 2  2 3688888888764

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=97.18  E-value=0.65  Score=54.00  Aligned_cols=129  Identities=18%  Similarity=0.203  Sum_probs=72.3

Q ss_pred             EEEEEecCCeEEEEEccCCceEEEEee--cCCCCEEEEEEecCC-----CCEEEEEeCCCcEEEEECCCceeeeeee-cc
Q 002564          195 VVAVGCSDGKIHVHNVRYDEELVTFTH--SMRGAVTALAFSSDG-----QPLLASGASSGVISIWNLEKRRLQSVIR-EA  266 (907)
Q Consensus       195 ~la~g~~dg~I~iwd~~~~~~~~~~~~--~~~~~v~~l~fs~dg-----~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~  266 (907)
                      .++++..+|.+.-+.......+..+..  .-...|.|+++.++.     ..+++.++.|+++++..+.....+..+. .+
T Consensus       551 qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~  630 (1205)
T KOG1898|consen  551 QIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQG  630 (1205)
T ss_pred             EEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccc
Confidence            455555556655555543333444431  124578899998875     2479999999999999988665555543 23


Q ss_pred             cccCeEEEEEec---CC------CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564          267 HDNAIISLHFFA---NE------PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (907)
Q Consensus       267 h~~~V~~l~~~~---~~------~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (907)
                      -..++.++.+-+   ++      -+|.+|-.+|.+.-..++.-.+...-.+++.--..+|.-..++
T Consensus       631 l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~l~d~rtR~lG~~pvkLf~~~  696 (1205)
T KOG1898|consen  631 LSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQLLDIRTRFLGLRPVKLFPIS  696 (1205)
T ss_pred             cCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccceeeeheeeeccccceEEEEe
Confidence            445555555543   22      1555666666665555555444332333332233344444333

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.12  E-value=0.074  Score=52.62  Aligned_cols=121  Identities=11%  Similarity=0.132  Sum_probs=88.2

Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (907)
                      ...+.+++|+|+.+ .|++-.....-.||=..+|..+.++...--...-++.+..++++.++--.++.+.++.++..+..
T Consensus        85 ~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          85 TANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             cccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            34599999999999 45555556666677667899998887444555678899989988888888999999888766432


Q ss_pred             cce------eEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEcee
Q 002564          304 PRL------LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (907)
Q Consensus       304 ~~~------~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~  345 (907)
                      ...      +..........-.++|.|..+.|+.+-.-.-+.+|.+..
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~  211 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ  211 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence            111      111112255778999999888999988888888888763

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.12  E-value=0.057  Score=61.61  Aligned_cols=185  Identities=14%  Similarity=0.178  Sum_probs=105.2

Q ss_pred             cccEEEEcCCCCCCEEEEEe------cCC--cEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC--------
Q 002564          139 FTPTCIMHPDTYLNKVIVGS------QEG--SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD--------  202 (907)
Q Consensus       139 ~~~~~~~~p~~~~~~l~~~s------~dg--~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d--------  202 (907)
                      ......++|++  +.++...      .++  .|.+++. .+.......+  ...+.-.|+|+|+.|++....        
T Consensus       351 ~vsspaiSpdG--~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        351 NITSAALSRSG--RQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             CcccceECCCC--CEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence            45677899999  6666554      233  4555564 3333222333  347888999998877776532        


Q ss_pred             ----CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEE---EECCCceeeee-----eecccccC
Q 002564          203 ----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI---WNLEKRRLQSV-----IREAHDNA  270 (907)
Q Consensus       203 ----g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i---wd~~~~~~~~~-----~~~~h~~~  270 (907)
                          +.+.+.++..++...    ...+.|..+.|||||..++++.  +|.|.+   -....|. ...     +..+-...
T Consensus       426 ~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eeecccEEeecccCCc
Confidence                233333443333222    1246799999999999544444  477777   4444453 111     22123344


Q ss_pred             eEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEE
Q 002564          271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  339 (907)
Q Consensus       271 V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~  339 (907)
                      +.++.|.+++.++ ++..++...+|.+.........+ .-.....++..++-+++  .++....+|.+.
T Consensus       499 ~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        499 AVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cccceEecCCEEE-EEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            6889999999854 55555556677665543322221 11123566777776653  455656666433

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.08  E-value=0.052  Score=61.88  Aligned_cols=176  Identities=14%  Similarity=0.084  Sum_probs=96.7

Q ss_pred             CCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe------cCCeEEEEEccCCceEEEEeecCCCCEEEEEEe
Q 002564          160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS  233 (907)
Q Consensus       160 dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~------~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs  233 (907)
                      +|.+.-.+-..-..+.-..+....+...+++|+|+.+|...      .|+.-.||-...+.....+...  ...+.-.|+
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWs  405 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWS  405 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceEC
Confidence            66555443222222222223334678999999999887665      2443344433333333444333  348899999


Q ss_pred             cCCCCEEEEEeCC------------CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC-C
Q 002564          234 SDGQPLLASGASS------------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-T  300 (907)
Q Consensus       234 ~dg~~~l~sg~~d------------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~-~  300 (907)
                      |||+ .+++....            +.+.+.++..+....    ...+.|..+.|+|||..++... ++.|.+=-+.. .
T Consensus       406 pDG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~  479 (591)
T PRK13616        406 LDAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE  479 (591)
T ss_pred             CCCC-ceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC
Confidence            9987 44444321            233333444333322    1346799999999999888766 46665532222 3


Q ss_pred             CCCccee--Eec-cCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564          301 DGDPRLL--RFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       301 ~~~~~~~--~~~-~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (907)
                      .+..++.  +.+ .+-...+.++.|.+++.+ +.+..++.-.+|.+.
T Consensus       480 ~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~  525 (591)
T PRK13616        480 DGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN  525 (591)
T ss_pred             CCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence            3322221  111 223344688999998874 455555544555543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.07  E-value=0.34  Score=48.17  Aligned_cols=183  Identities=12%  Similarity=0.053  Sum_probs=122.6

Q ss_pred             CceEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  502 (907)
                      .....+.+..+|.++-+.+.-|  .|+.+|+.+|+.......       ....--.+++...+ +...-.-.++...+||
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-------~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd  116 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-------PPRYFGEGITILGD-KLYQLTWKEGTGFVYD  116 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--------TTT--EEEEEEETT-EEEEEESSSSEEEEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-------CccccceeEEEECC-EEEEEEecCCeEEEEc
Confidence            3455677777777777776666  899999999988766542       22233345555533 3444455789999999


Q ss_pred             CCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecC-----CCCeeeEEECCCCcEEEEEeC
Q 002564          503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-----TDRITDFCFSEDGKWLLSSGM  577 (907)
Q Consensus       503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h-----~~~I~~l~fspdg~~l~s~s~  577 (907)
                      ..+.+.+.++.....-..++  .|++.|+.......++++|..+.+..+++.-.     -..++.+.+- +|...|=.=.
T Consensus       117 ~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~  193 (264)
T PF05096_consen  117 PNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ  193 (264)
T ss_dssp             TTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred             cccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence            99999999998887777777  56788888888889999999988877776532     2346667775 6777776666


Q ss_pred             CCcEEEEEcCCCceeeEeee----------------CCceEEEEECCCCceEEEEEe
Q 002564          578 DGSLRIWDVILARQIDAIHV----------------DVSITALSLSPNMDVLATAHV  618 (907)
Q Consensus       578 Dg~I~vwd~~~~~~~~~~~~----------------~~~v~~l~~spdg~~lat~~~  618 (907)
                      ...|..-|..+|+++..+..                ..-...+++.|.++.|...+.
T Consensus       194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            67788899999999887742                112789999887666655543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00320 WD40 WD40 repeats

Probab=96.98  E-value=0.0024  Score=42.37  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=35.1

Q ss_pred             CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (907)
Q Consensus       171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd  209 (907)
                      ++++..+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456777888999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.96  E-value=0.83  Score=49.90  Aligned_cols=153  Identities=18%  Similarity=0.212  Sum_probs=90.5

Q ss_pred             ccceEEEEe-eCCEEEEEec---CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCC--CEEEEEecCCcEEEE
Q 002564           93 SAKVNLLLL-FGEHILSIDI---DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL--NKVIVGSQEGSLQLW  166 (907)
Q Consensus        93 ~~~V~~l~~-~g~~l~s~~~---dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~l~~~s~dg~i~iw  166 (907)
                      -.+|..++| ||+.++-..-   +|.+++=|-.   .    ++.++.    +..+.|.|.+..  ..+++......|.+|
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~---v----iGqFEh----V~GlsW~P~~~~~~paLLAVQHkkhVtVW   87 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK---V----IGQFEH----VHGLSWAPPCTADTPALLAVQHKKHVTVW   87 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCCcc---E----eeccce----eeeeeecCcccCCCCceEEEeccceEEEE
Confidence            346777887 7776554431   3333222111   1    333322    234445554211  235555567789999


Q ss_pred             ecC-----CCeEEEEEcCC---CC--CEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCC
Q 002564          167 NIS-----TKKKLYEFKGW---GS--SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG  236 (907)
Q Consensus       167 d~~-----~~~~~~~~~~h---~~--~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg  236 (907)
                      -+.     +++.+..-..+   .-  --..+.|+|...+|++-.....-.++++..+...........+-|.|.+|.+||
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG  167 (671)
T ss_pred             EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence            874     23333222111   11  124578999999999888776667788876655444444446899999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCC
Q 002564          237 QPLLASGASSGVISIWNLEK  256 (907)
Q Consensus       237 ~~~l~sg~~dg~I~iwd~~~  256 (907)
                      +.++++-+..=.-++||-..
T Consensus       168 ~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CEEEEEeCCeEEEEEecCch
Confidence            96666666666778998543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.90  E-value=0.28  Score=48.21  Aligned_cols=121  Identities=21%  Similarity=0.219  Sum_probs=76.6

Q ss_pred             CCeEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCe-EEEEEccCCceEEEEeecCC-CCEEEEEEecCCCCEEEEEe--
Q 002564          170 TKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGK-IHVHNVRYDEELVTFTHSMR-GAVTALAFSSDGQPLLASGA--  244 (907)
Q Consensus       170 ~~~~~~~~~~h~~~I~~l~~sp~~~-~la~g~~dg~-I~iwd~~~~~~~~~~~~~~~-~~v~~l~fs~dg~~~l~sg~--  244 (907)
                      .|+++....- ...-..|+|+|... -++.+-.-|+ ..++|....+...++..... .-.-.=.|||||. +|...-  
T Consensus        57 aGk~v~~~~l-paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEnd  134 (366)
T COG3490          57 AGKIVFATAL-PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATEND  134 (366)
T ss_pred             CCceeeeeec-ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCC
Confidence            3444444321 23334578888654 4556655555 56888887776666553311 1222346999999 554432  


Q ss_pred             ---CCCcEEEEECCCc-eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEE
Q 002564          245 ---SSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW  295 (907)
Q Consensus       245 ---~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw  295 (907)
                         .-|.|-|||...+ +.+..+. .|.-....+.+.+||+.++.+.  |-|..-
T Consensus       135 fd~~rGViGvYd~r~~fqrvgE~~-t~GiGpHev~lm~DGrtlvvan--GGIeth  186 (366)
T COG3490         135 FDPNRGVIGVYDAREGFQRVGEFS-THGIGPHEVTLMADGRTLVVAN--GGIETH  186 (366)
T ss_pred             CCCCCceEEEEecccccceecccc-cCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence               2378999998755 4555666 7877888999999999988874  444443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.88  E-value=0.039  Score=59.16  Aligned_cols=89  Identities=13%  Similarity=0.168  Sum_probs=61.9

Q ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCC-----------------CC
Q 002564          176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-----------------QP  238 (907)
Q Consensus       176 ~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg-----------------~~  238 (907)
                      .+......+.+++.+|.+++.|+...=|.|.++|+.++..++.+++-.+..+.-+.....+                 ..
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence            3445567789999999999888876679999999999988877765433322222221111                 12


Q ss_pred             EEEEEeCCCcEEEEECCCceeeeeee
Q 002564          239 LLASGASSGVISIWNLEKRRLQSVIR  264 (907)
Q Consensus       239 ~l~sg~~dg~I~iwd~~~~~~~~~~~  264 (907)
                      +++-+-.-|.|.||++.+|..+..+.
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEE
Confidence            34455678999999998887777665

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.87  E-value=0.21  Score=49.56  Aligned_cols=165  Identities=9%  Similarity=0.088  Sum_probs=114.2

Q ss_pred             cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 002564          178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (907)
Q Consensus       178 ~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~  257 (907)
                      .+-...+.++.|+|+.+.|++......-.|+=...|+.+.++....-.....+.+..+|. ++++--.++.+.++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCC
Confidence            444566999999999999998888888888877889999988765455677888988887 6666668889998887765


Q ss_pred             eeeeeee--------ccc-ccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCC-------CCCCeEEE
Q 002564          258 RLQSVIR--------EAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-------SAPPLCIR  321 (907)
Q Consensus       258 ~~~~~~~--------~~h-~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-------~~~v~~i~  321 (907)
                      .......        ..+ ....-.++|.|.+..|+.+-.-+-+.++.+...... -.......+       -..+.++.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~-l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS-LSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc-cccccccCcccccceEeeccccce
Confidence            3222221        112 556789999999999999888888888876633211 111111112       23577788


Q ss_pred             Eec-CCCEEEEEeCCCCEEEEEce
Q 002564          322 FYA-NGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       322 ~~~-~g~~l~s~~~dg~i~iwd~~  344 (907)
                      |++ .+..++-+..++.+.-.|..
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecC
Confidence            887 55566666666666666543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.75  E-value=0.002  Score=60.70  Aligned_cols=143  Identities=18%  Similarity=0.184  Sum_probs=86.0

Q ss_pred             EEEEecCCcEEEEecCCCeEEEE-EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEE
Q 002564          154 VIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF  232 (907)
Q Consensus       154 l~~~s~dg~i~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~f  232 (907)
                      +..-+.+|.|.-++++..+.-.. -.-|...   ......+.-+++|+.+|.|.+|+..-..............|.++--
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            44445677777777654332111 0111111   1222334578999999999999976222221111111233433332


Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccc-cCeEEEEEecCCCEEEEE--cCCCcEEEEEccCC
Q 002564          233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSA--SADNSIKMWIFDTT  300 (907)
Q Consensus       233 s~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~--~~d~~i~vw~~~~~  300 (907)
                      ..+...+..+++.+|.|+.|++.-++.+.... .|. .++..+..+..+..++.+  |.|..++.|++...
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            22222288899999999999999988888776 677 566666666666677777  77777888876543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.72  E-value=0.72  Score=45.88  Aligned_cols=178  Identities=13%  Similarity=0.078  Sum_probs=114.1

Q ss_pred             EEEe-e-CCEEEEEecCC--cEEEEecCCCCccccceeeEecCC-CcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe
Q 002564           98 LLLL-F-GEHILSIDIDG--NMFIWAFKGIEENLAPVGHVKLDD-KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK  172 (907)
Q Consensus        98 ~l~~-~-g~~l~s~~~dg--~v~vWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~  172 (907)
                      .+.+ + |..+-|.+.-|  .|+.+|+.+++.    .....++. -+.-.+.+..+   ......-.++...+||..+.+
T Consensus        49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~----~~~~~l~~~~FgEGit~~~d---~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKV----LQSVPLPPRYFGEGITILGD---KLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             EEEEEETTEEEEEECSTTEEEEEEEETTTSSE----EEEEE-TTT--EEEEEEETT---EEEEEESSSSEEEEEETTTTE
T ss_pred             cEEecCCCEEEEeCCCCCcEEEEEEECCCCcE----EEEEECCccccceeEEEECC---EEEEEEecCCeEEEEccccce
Confidence            4555 4 55566777655  599999999987    66666654 33334444443   234455578899999999999


Q ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCC----CCEEEEEEecCCCCEEEEEeCCCc
Q 002564          173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR----GAVTALAFSSDGQPLLASGASSGV  248 (907)
Q Consensus       173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~----~~v~~l~fs~dg~~~l~sg~~dg~  248 (907)
                      .+.++.-. +.=+.++  .+++.|+.......+..+|..+-+...++.....    ..+.-+.|- +|. +.|=.-....
T Consensus       122 ~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~  196 (264)
T PF05096_consen  122 KIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDR  196 (264)
T ss_dssp             EEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSE
T ss_pred             EEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCe
Confidence            99888642 3335555  5667777777778999999988877776653311    245667776 565 6665556778


Q ss_pred             EEEEECCCceeeeeeec-----------cc---ccCeEEEEEecCCCEEEEEc
Q 002564          249 ISIWNLEKRRLQSVIRE-----------AH---DNAIISLHFFANEPVLMSAS  287 (907)
Q Consensus       249 I~iwd~~~~~~~~~~~~-----------~h---~~~V~~l~~~~~~~~l~s~~  287 (907)
                      |...|..+|+....+..           .+   ..-.+.+++.|....|...|
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            99999999988877641           01   24578999999877666555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.72  E-value=0.074  Score=56.55  Aligned_cols=140  Identities=11%  Similarity=0.214  Sum_probs=99.5

Q ss_pred             CCCEE-EEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCC-------EEEEEeCCCeEEEEEcccc-e-eEEEee
Q 002564          485 TNTLM-ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-------LLATVADDLVIRLFDVVAL-R-MVRKFE  554 (907)
Q Consensus       485 ~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-------~la~~~~dg~I~v~d~~~~-~-~~~~~~  554 (907)
                      +.++| .+++....++-.|+..|+.+..+..+..|+-+.+.|+.+       .-.+|-+|..|.-||.+-. + .+..-+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            33444 445566778889999999999999998899999988764       2346777889999998632 2 233333


Q ss_pred             cCC----CCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeE-ee-eCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564          555 GHT----DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA-IH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       555 ~h~----~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~-~~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (907)
                      +|.    ....|.+-..+| ++|.||.+|-||+||- .+....+ +. ...+|..+..+.||++|+..+..  ++-|-+.
T Consensus       424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t--yLlLi~t  499 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT--YLLLIDT  499 (644)
T ss_pred             ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc--EEEEEEE
Confidence            332    334555555566 8999999999999997 5544433 33 35679999999999999888765  4666554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.59  E-value=0.42  Score=50.66  Aligned_cols=199  Identities=10%  Similarity=0.104  Sum_probs=97.3

Q ss_pred             CEEEEEe-cCCcEEEEecCC----CeEEEEEcC---CC----CCEEEEEEcCCCCEEEEEec------CCeEEEEEccCC
Q 002564          152 NKVIVGS-QEGSLQLWNIST----KKKLYEFKG---WG----SSISSCVSSPALDVVAVGCS------DGKIHVHNVRYD  213 (907)
Q Consensus       152 ~~l~~~s-~dg~i~iwd~~~----~~~~~~~~~---h~----~~I~~l~~sp~~~~la~g~~------dg~I~iwd~~~~  213 (907)
                      ++|++.+ ..++|+|.|+.+    .+..+.+..   +.    +.-...-.-|+|++++++-.      -|.+.+.|-++.
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf  167 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF  167 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence            5677765 678999999873    345555542   11    22233445578888887633      266888998888


Q ss_pred             ceEEEEeecC--CCCEEEEEEecCCCCEEEEEeC--------------------CCcEEEEECCCceeeeeeeccccc-C
Q 002564          214 EELVTFTHSM--RGAVTALAFSSDGQPLLASGAS--------------------SGVISIWNLEKRRLQSVIREAHDN-A  270 (907)
Q Consensus       214 ~~~~~~~~~~--~~~v~~l~fs~dg~~~l~sg~~--------------------dg~I~iwd~~~~~~~~~~~~~h~~-~  270 (907)
                      +.........  ..--+..-|.|..+ ++++...                    ..++.+||+.+.+.++++..+..+ .
T Consensus       168 ~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  168 EVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             -EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             cccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            8777776542  22345677777665 7776532                    368999999999999999855444 4


Q ss_pred             eEEEEEecC--CCEEEEEc-CCCcEEEEEccCCCCCcceeEec-------------------cCCCCCCeEEEEecCCCE
Q 002564          271 IISLHFFAN--EPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFR-------------------SGHSAPPLCIRFYANGRH  328 (907)
Q Consensus       271 V~~l~~~~~--~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~-------------------~~h~~~v~~i~~~~~g~~  328 (907)
                      ...+.|..+  ..+=++++ -..+|..|--+ .++.+...+..                   ..-..-|+.|..+.|.++
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~-~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKD-DDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE--ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEc-CCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            567888765  33333332 23344333221 12222211111                   111345789999999998


Q ss_pred             EEEE-eCCCCEEEEEceecccceee
Q 002564          329 ILSA-GQDRAFRLFSVIQDQQSREL  352 (907)
Q Consensus       329 l~s~-~~dg~i~iwd~~~~~~~~~~  352 (907)
                      |+.+ -.+|.+|.||+......+..
T Consensus       326 LYvs~W~~GdvrqYDISDP~~Pkl~  350 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNPKLV  350 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred             EEEEcccCCcEEEEecCCCCCCcEE
Confidence            8755 46899999999876655443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.58  E-value=1.1  Score=46.19  Aligned_cols=270  Identities=14%  Similarity=0.091  Sum_probs=121.7

Q ss_pred             CCcceEEEEEecCeEEEEEcCeEEEEe---CCeeEE--EEccc---ccceEEEEeeCCEEEEEecCCcEEEEecCCCCcc
Q 002564           55 LPKKIRALASYRDYTFAAYGNHIAVVK---RAHQVA--TWSRH---SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN  126 (907)
Q Consensus        55 ~~~~I~~la~~~~~~~~a~g~~I~vw~---~~~~~~--~~~~h---~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~  126 (907)
                      ...++..|+|..+..-.+.|..=.++.   -++.=.  .....   .-...++.+.++....++..+ +.+--.+.++..
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g-~ll~T~DgG~tW   93 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG-LLLHTTDGGKTW   93 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT-EEEEESSTTSS-
T ss_pred             CCCceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc-eEEEecCCCCCc
Confidence            456788888885544444444422332   222111  11111   223566777766666666555 333444444441


Q ss_pred             ccceeeEec----CCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEE-EcCCCCCEEEEEEcCCCCEEEEEec
Q 002564          127 LAPVGHVKL----DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCS  201 (907)
Q Consensus       127 ~~~~~~~~~----~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~~~~la~g~~  201 (907)
                          ..+..    +.......++. ++   .+..++..|.|+.=. +.|+.-.. ...-.+.+..+..+++|++++++..
T Consensus        94 ----~~v~l~~~lpgs~~~i~~l~-~~---~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~  164 (302)
T PF14870_consen   94 ----ERVPLSSKLPGSPFGITALG-DG---SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR  164 (302)
T ss_dssp             ----EE----TT-SS-EEEEEEEE-TT---EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETT
T ss_pred             ----EEeecCCCCCCCeeEEEEcC-CC---cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECc
Confidence                22211    12222222222 22   344445556443322 23332222 2344578899999999999999877


Q ss_pred             CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEEC-CCceeeee-ee-c-ccccCeEEEEEe
Q 002564          202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL-EKRRLQSV-IR-E-AHDNAIISLHFF  277 (907)
Q Consensus       202 dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~-~~~~~~~~-~~-~-~h~~~V~~l~~~  277 (907)
                      -....-||.-.. .-..........|.+|.|+|++. +.+ ....|.|+.=+. .....-.. +. . ...-.+..++|.
T Consensus       165 G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~  241 (302)
T PF14870_consen  165 GNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYR  241 (302)
T ss_dssp             SSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEES
T ss_pred             ccEEEEecCCCc-cceEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEec
Confidence            555567764321 12222222357899999999987 444 447888888772 22221111 11 0 223458999999


Q ss_pred             cCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEE
Q 002564          278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF  341 (907)
Q Consensus       278 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iw  341 (907)
                      +++...++|+. |.+.+ ..| ....++..+....-...+..+.|.++. .-+..+.+|.|.-|
T Consensus       242 ~~~~~wa~gg~-G~l~~-S~D-gGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  242 PPNEIWAVGGS-GTLLV-STD-GGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLGQDGVLLRY  301 (302)
T ss_dssp             SSS-EEEEEST-T-EEE-ESS-TTSS-EE-GGGTTSSS---EEEEEETT-EEEEE-STTEEEEE
T ss_pred             CCCCEEEEeCC-ccEEE-eCC-CCccceECccccCCCCceEEEEEcCCC-ceEEECCCcEEEEe
Confidence            98877777664 44432 222 222333333333445678899998664 45555678876544

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=96.58  E-value=1  Score=48.88  Aligned_cols=145  Identities=16%  Similarity=0.189  Sum_probs=84.4

Q ss_pred             ccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCC-CCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEE
Q 002564          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT  218 (907)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~-~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~  218 (907)
                      +....+.-.   +.+.+|+.+| +..||..+++.++.-.... .+|..+..+-.++ +-+|+.+| |.+.+.+..+....
T Consensus       167 V~aLv~D~~---g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn~  240 (671)
T COG3292         167 VVALVFDAN---GRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASNW  240 (671)
T ss_pred             ceeeeeecc---CcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccccc
Confidence            334444444   4688898988 8889998988887655443 6777777776664 66777766 67777665333222


Q ss_pred             EeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc--ccCeEEEEEecCCCEEEEEcCCCcEEE
Q 002564          219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH--DNAIISLHFFANEPVLMSASADNSIKM  294 (907)
Q Consensus       219 ~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~s~~~d~~i~v  294 (907)
                      ...-..+.|..+.=..+|.  +-.|+.+|..+ ..+....+......-|  -+.|.++....+|. |-+++.++.+++
T Consensus       241 ~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~  314 (671)
T COG3292         241 GPMLPSGNILLLVQDAQGE--LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRY  314 (671)
T ss_pred             CCCCcchheeeeecccCCC--EEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEE
Confidence            2222245666665555554  66677666443 3444443333322122  23556666666664 555555554443

>PRK13684 Ycf48-like protein; Provisional

Probab=96.54  E-value=1.4  Score=46.81  Aligned_cols=272  Identities=10%  Similarity=0.054  Sum_probs=133.3

Q ss_pred             CcceEEEEEecCeEEEEEcCeEEEEe---CCeeEEE----EcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCcccc
Q 002564           56 PKKIRALASYRDYTFAAYGNHIAVVK---RAHQVAT----WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA  128 (907)
Q Consensus        56 ~~~I~~la~~~~~~~~a~g~~I~vw~---~~~~~~~----~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~  128 (907)
                      ...+.+|+|..+..-.+.|..-.||.   -++.-..    +......+.++.+.++....++..|.|  +...++-....
T Consensus        45 ~~~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~g~i--~~S~DgG~tW~  122 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQPSLL--LHTTDGGKNWT  122 (334)
T ss_pred             CCceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCCCceE--EEECCCCCCCe
Confidence            56788899876655555555544443   2222111    111223466777655544445555543  33333222111


Q ss_pred             ceeeE-ecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEE
Q 002564          129 PVGHV-KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKIH  206 (907)
Q Consensus       129 ~~~~~-~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~~~~la~g~~dg~I~  206 (907)
                      .+..- ..........++.+.    .+..++..|.|..=+ +.|+.-..+. .-...+..+.+.|++.+++++.. |.+.
T Consensus       123 ~~~~~~~~~~~~~~i~~~~~~----~~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~-G~i~  196 (334)
T PRK13684        123 RIPLSEKLPGSPYLITALGPG----TAEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSR-GNFY  196 (334)
T ss_pred             EccCCcCCCCCceEEEEECCC----cceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeCC-ceEE
Confidence            11100 011111112222222    123334445343222 2333322222 22457889999999877766654 6443


Q ss_pred             EEEccC-CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecc---cccCeEEEEEecCCCE
Q 002564          207 VHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA---HDNAIISLHFFANEPV  282 (907)
Q Consensus       207 iwd~~~-~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~  282 (907)
                      . .... ++.-..........++++.+.++++ ++++| ..|.+.+=..+.+..-......   ....+.++.+.+++..
T Consensus       197 ~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~  273 (334)
T PRK13684        197 S-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI  273 (334)
T ss_pred             E-EcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCE
Confidence            2 2222 2333333334456899999999998 55555 4576653334444332222211   2245788999988765


Q ss_pred             EEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEE
Q 002564          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS  342 (907)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd  342 (907)
                      ++ ++.+|.+.. ..+. ...++......+-......+.|..+++. +..+..|.|..++
T Consensus       274 ~~-~G~~G~v~~-S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~  329 (334)
T PRK13684        274 WA-GGGNGTLLV-SKDG-GKTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRGVLLRYV  329 (334)
T ss_pred             EE-EcCCCeEEE-eCCC-CCCCeECCcCCCCCcceEEEEEeCCCce-EEECCCceEEEec
Confidence            55 445675543 2222 2223332221222345777887766554 5566778877665

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.50  E-value=0.0081  Score=56.81  Aligned_cols=103  Identities=17%  Similarity=0.209  Sum_probs=68.5

Q ss_pred             CCCEEEEEecCCeEEEEECCC-CceeeeeecC-cceeE-EEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCC-CCe
Q 002564          485 TNTLMISAGYHGDIKVWDFKG-RDLKSRWEVG-CSLVK-IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRI  560 (907)
Q Consensus       485 ~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~i~~-~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~-~~I  560 (907)
                      -+..++.|+.+|.|.+|...- +......... ..|.+ +.-..++.+..+++.||.|+.|++.-.+.+.....|. .++
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            346788999999999998762 1111111111 22322 2333456689999999999999999888888777777 555


Q ss_pred             eeEEECCCCcEEEEE--eCCCcEEEEEcC
Q 002564          561 TDFCFSEDGKWLLSS--GMDGSLRIWDVI  587 (907)
Q Consensus       561 ~~l~fspdg~~l~s~--s~Dg~I~vwd~~  587 (907)
                      .....+..+++|+.+  |.|..++.|++.
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchh
Confidence            555555556666666  666666666654

>PHA02713 hypothetical protein; Provisional

Probab=96.45  E-value=0.12  Score=59.10  Aligned_cols=190  Identities=10%  Similarity=0.059  Sum_probs=94.8

Q ss_pred             CEEEEEecC------CcEEEEecCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCC-----eEEEEEccCCceEEEE
Q 002564          152 NKVIVGSQE------GSLQLWNISTKKKLYEFKGW-GSSISSCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTF  219 (907)
Q Consensus       152 ~~l~~~s~d------g~i~iwd~~~~~~~~~~~~h-~~~I~~l~~sp~~~~la~g~~dg-----~I~iwd~~~~~~~~~~  219 (907)
                      ...++|+.+      ..+..||..+..-. .+..- ...-......-++++.+.|+.++     .+..||..+++-...-
T Consensus       305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~  383 (557)
T PHA02713        305 EIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP  383 (557)
T ss_pred             EEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence            455666643      34778887766421 11110 11111122233567777887653     4788998876533211


Q ss_pred             eecC-CCCEEEEEEecCCCCEEEEEeCC-----------------------CcEEEEECCCceeeeeeecccccCeEEEE
Q 002564          220 THSM-RGAVTALAFSSDGQPLLASGASS-----------------------GVISIWNLEKRRLQSVIREAHDNAIISLH  275 (907)
Q Consensus       220 ~~~~-~~~v~~l~fs~dg~~~l~sg~~d-----------------------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~  275 (907)
                      .... ......+  .-+|. +.+.|+.+                       ..+..||..+.+-...-...+...-.+++
T Consensus       384 ~mp~~r~~~~~~--~~~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~  460 (557)
T PHA02713        384 DMPIALSSYGMC--VLDQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV  460 (557)
T ss_pred             CCCcccccccEE--EECCE-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence            1111 1111222  23566 77777754                       24778888877543222211111111222


Q ss_pred             EecCCCEEEEEcCCC------cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCC--CEEEEEceecc
Q 002564          276 FFANEPVLMSASADN------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--AFRLFSVIQDQ  347 (907)
Q Consensus       276 ~~~~~~~l~s~~~d~------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg--~i~iwd~~~~~  347 (907)
                       .-++.+.+.||.++      .+..||.++. ..+..+............+.+  +|+..++||.+|  ++..||..+++
T Consensus       461 -~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        461 -SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY-NGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             -EECCEEEEEeCCCCCCccceeEEEecCCCC-CCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence             33566667776542      2445554430 345554444333333323333  678888999888  66777776655


Q ss_pred             cc
Q 002564          348 QS  349 (907)
Q Consensus       348 ~~  349 (907)
                      -.
T Consensus       537 W~  538 (557)
T PHA02713        537 WN  538 (557)
T ss_pred             cc
Confidence            43

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.0095  Score=68.36  Aligned_cols=102  Identities=21%  Similarity=0.496  Sum_probs=75.0

Q ss_pred             CCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe
Q 002564          192 ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI  271 (907)
Q Consensus       192 ~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V  271 (907)
                      .+-.+++|+..|.+...|+...=.......+..++|++++|+.||. +++.|-.+|.|.+||...++..+.+. .|..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeee-ecCCcc
Confidence            4457889999999998887643111112223367999999999999 88899999999999999999998887 666655


Q ss_pred             EEEE---EecCCCEEEEEcCCCcEEEEEc
Q 002564          272 ISLH---FFANEPVLMSASADNSIKMWIF  297 (907)
Q Consensus       272 ~~l~---~~~~~~~l~s~~~d~~i~vw~~  297 (907)
                      +++-   +..++..++++...|.  +|.+
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            5544   3445557788777675  6654

>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15)

Probab=96.37  E-value=0.018  Score=52.46  Aligned_cols=110  Identities=15%  Similarity=0.161  Sum_probs=84.4

Q ss_pred             HHHHhhcc-ccCChHHHHHHHHhC-CCCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHhcCCCHHhHHHH
Q 002564          775 IQLLHSCA-EMKNFSAFTDYIKSL-SPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAV  852 (907)
Q Consensus       775 ~~~l~~~~-~~~~~~~~~~~l~~~-~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  852 (907)
                      .+.|..+. .+.+...++.+|.+| --.++...+..-+               ...|..+|+|+...+...+.+.++.-+
T Consensus        35 ~~ALD~aL~~~~~p~~~vavl~EL~~R~~L~~AL~~Rd---------------e~~L~piL~Fl~k~i~~pr~~~~l~~v   99 (148)
T PF09384_consen   35 KKALDAALVKNKSPEVVVAVLEELIRRGALRAALAGRD---------------EESLEPILKFLIKNITDPRYTRILVDV   99 (148)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHccHHHHHHHhCC---------------HHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence            34444444 445556666666666 4555555555444               388999999999999999999999999


Q ss_pred             HHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHhhccceeeeh
Q 002564          853 IRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVS  900 (907)
Q Consensus       853 ~~~~l~~h~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  900 (907)
                      +..+|-+.++.+.+.+.+.+.+..|+..++++-...+.+ ....|++.
T Consensus       100 ~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~E~~~~~~l-~~l~G~ld  146 (148)
T PF09384_consen  100 ANIILDIYSPVIGQSPEVDKLFQKLQRKVQEELQLQKEL-LELQGMLD  146 (148)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHh
Confidence            999999999999999999999999999997777665555 55566554

This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=1.3  Score=43.94  Aligned_cols=235  Identities=10%  Similarity=0.052  Sum_probs=141.4

Q ss_pred             CcceEEEEEecCeEEEEEcCeEEEEeCCe------e-EEEEcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCcccc
Q 002564           56 PKKIRALASYRDYTFAAYGNHIAVVKRAH------Q-VATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA  128 (907)
Q Consensus        56 ~~~I~~la~~~~~~~~a~g~~I~vw~~~~------~-~~~~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~  128 (907)
                      .+.|.++.....+-+++.|..+.+.|...      . +...-.-.+-+..+.+.+++...+..+.-++|.|+.+....  
T Consensus        42 g~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP--  119 (370)
T COG5276          42 GKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSP--  119 (370)
T ss_pred             cCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCc--
Confidence            48899999999999999999876666321      1 11122233455566678999999999999999999987662  


Q ss_pred             ceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeE
Q 002564          129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKI  205 (907)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I  205 (907)
                        ..+..-...-..-.+.-.+  ++..++..+.-+.+.|+.+..   +...+......-..++.|  |++-.++..|+-+
T Consensus       120 --~~~~~lnt~gyaygv~vsG--n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL  193 (370)
T COG5276         120 --TLIGFLNTDGYAYGVYVSG--NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGL  193 (370)
T ss_pred             --ceeccccCCceEEEEEecC--CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCe
Confidence              2221111112333445556  778888756558888886543   333344334444555554  5677777889999


Q ss_pred             EEEEccCCceEEEEeecCC-CCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEE-EEecCCCEE
Q 002564          206 HVHNVRYDEELVTFTHSMR-GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISL-HFFANEPVL  283 (907)
Q Consensus       206 ~iwd~~~~~~~~~~~~~~~-~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~l  283 (907)
                      .|.|+.......-+..-.. ..+.++..+++-. +++...  --+.+-|..+.+....+..-....+.++ .+.-.+++.
T Consensus       194 ~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vvy~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~  270 (370)
T COG5276         194 TIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVVYD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYA  270 (370)
T ss_pred             EEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEEcc--cceEEEecCCCCCceEeeccccCCcccccceeccccee
Confidence            9999976543222221112 3788888887765 555443  3477777766654333331122222222 222345566


Q ss_pred             EEEcCCCcEEEEEccCCC
Q 002564          284 MSASADNSIKMWIFDTTD  301 (907)
Q Consensus       284 ~s~~~d~~i~vw~~~~~~  301 (907)
                      ..+..+.-+.+-|+..+.
T Consensus       271 Yvadga~gl~~idisnp~  288 (370)
T COG5276         271 YVADGAKGLPIIDISNPP  288 (370)
T ss_pred             eeeccccCceeEeccCCC
Confidence            666666667777666543

>PHA02713 hypothetical protein; Provisional

Probab=96.28  E-value=0.28  Score=56.20  Aligned_cols=218  Identities=12%  Similarity=0.133  Sum_probs=109.4

Q ss_pred             eEEEEEcCcceEEEecCCCCcce--EEEEEecCeEEEEEcC--------eEEEEeCCeeEEE-Ec---ccccceEEEEee
Q 002564           37 AFHIYNCAKLNLVLVGPQLPKKI--RALASYRDYTFAAYGN--------HIAVVKRAHQVAT-WS---RHSAKVNLLLLF  102 (907)
Q Consensus        37 ~v~iwd~~~~~~~~~~~~~~~~I--~~la~~~~~~~~a~g~--------~I~vw~~~~~~~~-~~---~h~~~V~~l~~~  102 (907)
                      .+..||..+.+-....+ .+.+.  .+++...+..|++.|.        .+..||.....-. ..   ...........+
T Consensus       273 ~v~~yd~~~~~W~~l~~-mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~  351 (557)
T PHA02713        273 CILVYNINTMEYSVIST-IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID  351 (557)
T ss_pred             CEEEEeCCCCeEEECCC-CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence            46789998876544332 12222  3556666777776652        1667774332111 11   111222233346


Q ss_pred             CCEEEEEecCC-----cEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecC-----------------
Q 002564          103 GEHILSIDIDG-----NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----------------  160 (907)
Q Consensus       103 g~~l~s~~~dg-----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~d-----------------  160 (907)
                      |...+.||.++     ++..||..+.+-..  +..+.....  ...+..-++  ...++|+.+                 
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~--~~~mp~~r~--~~~~~~~~g--~IYviGG~~~~~~~~~~~~~~~~~~~  425 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKM--LPDMPIALS--SYGMCVLDQ--YIYIIGGRTEHIDYTSVHHMNSIDME  425 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEE--CCCCCcccc--cccEEEECC--EEEEEeCCCccccccccccccccccc
Confidence            66666677654     37888887654311  111111111  112222344  455556554                 


Q ss_pred             ------CcEEEEecCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEEccC-CceE--EEEeecC
Q 002564          161 ------GSLQLWNISTKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRY-DEEL--VTFTHSM  223 (907)
Q Consensus       161 ------g~i~iwd~~~~~~--~~~~~~h~~~I~~l~~sp~~~~la~g~~d------g~I~iwd~~~-~~~~--~~~~~~~  223 (907)
                            ..+..||..+.+=  +..+..  ......+..-++++.++|+.+      ..+..||..+ ++-.  ..+... 
T Consensus       426 ~~~~~~~~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~-  502 (557)
T PHA02713        426 EDTHSSNKVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR-  502 (557)
T ss_pred             ccccccceEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc-
Confidence                  2467777766532  222211  111122223346666677654      2467899887 4432  222221 


Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCC--cEEEEECCCceeeeeeecccc
Q 002564          224 RGAVTALAFSSDGQPLLASGASSG--VISIWNLEKRRLQSVIREAHD  268 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg--~I~iwd~~~~~~~~~~~~~h~  268 (907)
                      ......+.+  +|. +.++|+.+|  .+..||..+.+-..... .|.
T Consensus       503 r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~~W~~~~~-~~~  545 (557)
T PHA02713        503 LSALHTILH--DNT-IMMLHCYESYMLQDTFNVYTYEWNHICH-QHS  545 (557)
T ss_pred             cccceeEEE--CCE-EEEEeeecceeehhhcCcccccccchhh-hcC
Confidence            112222222  566 888999887  77888888876655544 444

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=0.12  Score=59.94  Aligned_cols=112  Identities=12%  Similarity=0.174  Sum_probs=82.7

Q ss_pred             ccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe
Q 002564           93 SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK  172 (907)
Q Consensus        93 ~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~  172 (907)
                      ...+.+.+..+.+++.|+..|.+...|..+.-..   ...-....+.+.+.+|+.++  ..++.|-.+|.|.+||+..++
T Consensus        89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~---~~~ne~v~~~Vtsvafn~dg--~~l~~G~~~G~V~v~D~~~~k  163 (1206)
T KOG2079|consen   89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGP---LHQNERVQGPVTSVAFNQDG--SLLLAGLGDGHVTVWDMHRAK  163 (1206)
T ss_pred             CcceeeeeeeeeeEEEEcCchhhhhhhhhcccch---hhcCCccCCcceeeEecCCC--ceeccccCCCcEEEEEccCCc
Confidence            4456666677889999998999998887664221   11111234567788899999  889999999999999999999


Q ss_pred             EEEEEcCCCCCEEEEEE---cCCCCEEEEEecCCeEEEEEcc
Q 002564          173 KLYEFKGWGSSISSCVS---SPALDVVAVGCSDGKIHVHNVR  211 (907)
Q Consensus       173 ~~~~~~~h~~~I~~l~~---sp~~~~la~g~~dg~I~iwd~~  211 (907)
                      .++.+..|+.+.+.+-+   ..++..+.++...|.  +|++.
T Consensus       164 ~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  164 ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            99999887777666543   445557777777675  67654

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=96.22  E-value=1.8  Score=47.09  Aligned_cols=357  Identities=13%  Similarity=0.087  Sum_probs=173.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceee
Q 002564          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ  260 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~  260 (907)
                      ..+|.++.+..+| .+-+|+.|| +..||..+++.+..-......+|..+.-+-.|+  |.+|+.+| |.+.+.+..+..
T Consensus       164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~--LWVGTdqG-v~~~e~~G~~~s  238 (671)
T COG3292         164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR--LWVGTDQG-VYLQEAEGWRAS  238 (671)
T ss_pred             CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc--EEEEeccc-eEEEchhhcccc
Confidence            5778889898887 466788877 677888888877766655446788888877887  67787655 777776653332


Q ss_pred             eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcc-eeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEE
Q 002564          261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR-LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR  339 (907)
Q Consensus       261 ~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~-~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~  339 (907)
                      .....-..+.|..+.-..+| .+-.|+..|-.+   ...+..... +..........|.++....+| -+-+++.+|.++
T Consensus       239 n~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r---~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG-sLWv~t~~giv~  313 (671)
T COG3292         239 NWGPMLPSGNILLLVQDAQG-ELWIGTENGLWR---TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG-SLWVGTYGGIVR  313 (671)
T ss_pred             ccCCCCcchheeeeecccCC-CEEEeeccccee---EecCCCCccccccccCCccccccceeeccCC-CEeeeccCceEE
Confidence            22221122333333322233 344444444222   122211111 111111112344555555455 355566665554


Q ss_pred             EEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeec
Q 002564          340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP  419 (907)
Q Consensus       340 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~  419 (907)
                      +-+-.                                            |.........+                    
T Consensus       314 ~~~a~--------------------------------------------w~~ma~in~~d--------------------  329 (671)
T COG3292         314 YLTAD--------------------------------------------WKRMAVINDSD--------------------  329 (671)
T ss_pred             Eecch--------------------------------------------hhheeeeecCC--------------------
Confidence            43211                                            00000000000                    


Q ss_pred             CCCCCCceEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCe
Q 002564          420 CPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (907)
Q Consensus       420 ~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~  497 (907)
                        +  ..+..++..|  .+..+-...+.|.+.+-+-.+|.......       ......|+.++++.+++ +-.++...-
T Consensus       330 --G--~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~-------q~Rg~nit~~~~d~~g~-lWlgs~q~G  397 (671)
T COG3292         330 --G--GVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVH-------QLRGMNITTTLEDSRGR-LWLGSMQNG  397 (671)
T ss_pred             --C--chhhhhccCchhcccceeeccccceEEEecCCCCcEEEEee-------eccccccchhhhccCCc-EEEEecccc
Confidence              0  0011111111  12222223333344444444554444332       13335677777777554 444554434


Q ss_pred             EEEEECCC-Cceeeeeec--CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee--cC---CCCeeeEEECCCC
Q 002564          498 IKVWDFKG-RDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE--GH---TDRITDFCFSEDG  569 (907)
Q Consensus       498 i~iwd~~~-~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~--~h---~~~I~~l~fspdg  569 (907)
                      +..|+-++ +-.......  .+++..+.-.|+++ |-.|+.+|.++. +.+.++....+.  .|   .+.|..+..-|+|
T Consensus       398 Lsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g  475 (671)
T COG3292         398 LSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDG  475 (671)
T ss_pred             hhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCC
Confidence            44555554 222222222  26788888888888 777888876654 334433332222  12   2457788899999


Q ss_pred             cEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          570 KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       570 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                      +.-+.+ .+| |..|+.+.....-.+.....-....+--.++++-.+...+  +.-|.+.
T Consensus       476 ~Lw~a~-g~g-va~~~sq~~~~~~~l~~~~q~qy~f~~~~~d~vw~~~~Rg--~vr~r~s  531 (671)
T COG3292         476 RLWLAA-GSG-VAAWESQRRMFVPILDLTGQRQYSFVPVGGDEVWVHRLRG--LVRWRHS  531 (671)
T ss_pred             ceEEEe-cce-eeeeccccceecccccccceeeEEEEEccCceEeeeeece--eeeeccC
Confidence            854432 244 6888866443332222222111111223555555544333  5556554

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.19  E-value=2.4  Score=45.88  Aligned_cols=143  Identities=18%  Similarity=0.272  Sum_probs=93.8

Q ss_pred             CEEEEEecCCcEEEEecCCCe-----EEEEEcCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEEccCC--c-----
Q 002564          152 NKVIVGSQEGSLQLWNISTKK-----KLYEFKGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYD--E-----  214 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~h~~~I~~l~~sp-----~~~~la~g~~dg~I~iwd~~~~--~-----  214 (907)
                      .+|++|+..|.++||+...+.     ++.+.+ -..+|..++.-+     +...||+ -.-..+.||.+...  .     
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            689999999999999985433     222222 367888887543     2345666 44578999988421  1     


Q ss_pred             --eE-EEEeecCCCCEEEEEEec----CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc
Q 002564          215 --EL-VTFTHSMRGAVTALAFSS----DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS  287 (907)
Q Consensus       215 --~~-~~~~~~~~~~v~~l~fs~----dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~  287 (907)
                        .+ ..+.+.-......++.-|    .|+.++.+-+.||.+.+|+-+.-.....+.  ..--.-.+.|.+....+++++
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tDsfvt~s  193 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPRTDSFVTAS  193 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeecCCEEEEec
Confidence              11 112222223344444443    234688899999999999977665555544  233335678888888999999


Q ss_pred             CCCcEEEEEcc
Q 002564          288 ADNSIKMWIFD  298 (907)
Q Consensus       288 ~d~~i~vw~~~  298 (907)
                      .+..+..|.+.
T Consensus       194 ss~~l~~Yky~  204 (418)
T PF14727_consen  194 SSWTLECYKYQ  204 (418)
T ss_pred             CceeEEEecHH
Confidence            99999999764

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.18  E-value=1.1  Score=42.92  Aligned_cols=50  Identities=16%  Similarity=0.187  Sum_probs=42.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC
Q 002564          428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (907)
Q Consensus       428 ~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  485 (907)
                      -.+++..+|+..++..+.|+|..+|..+|+.+.++.        -....|++.+|-..
T Consensus       215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik--------lPt~qitsccFgGk  264 (310)
T KOG4499|consen  215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK--------LPTPQITSCCFGGK  264 (310)
T ss_pred             CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE--------cCCCceEEEEecCC
Confidence            345667789999999999999999999999999986        44778999999654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.14  E-value=0.49  Score=47.99  Aligned_cols=151  Identities=13%  Similarity=0.095  Sum_probs=92.5

Q ss_pred             CEEEEEEcCCCCEEEEEe-cCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEE-CCCceee
Q 002564          183 SISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN-LEKRRLQ  260 (907)
Q Consensus       183 ~I~~l~~sp~~~~la~g~-~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd-~~~~~~~  260 (907)
                      .+.+.+++++++.+|... .++.-.+|-...+........  ...++.-+|++++. +.+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCC-EEEEEcCCCceEEEEecCCCcce
Confidence            789999999999777655 233334444444544444432  34789999999987 666666566666663 3333222


Q ss_pred             e-eee-cccccCeEEEEEecCCCEEEEEc---CCCcEEEEEccCCCCC-ccee----EeccCCCCCCeEEEEecCCCEEE
Q 002564          261 S-VIR-EAHDNAIISLHFFANEPVLMSAS---ADNSIKMWIFDTTDGD-PRLL----RFRSGHSAPPLCIRFYANGRHIL  330 (907)
Q Consensus       261 ~-~~~-~~h~~~V~~l~~~~~~~~l~s~~---~d~~i~vw~~~~~~~~-~~~~----~~~~~h~~~v~~i~~~~~g~~l~  330 (907)
                      . .+. ..-.+.|..+.++|||..++...   .++.|.+=-+...... +..+    .........+..+.|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            1 111 11112899999999999777655   3466666555433222 2222    22223456889999999988777


Q ss_pred             EEeCCC
Q 002564          331 SAGQDR  336 (907)
Q Consensus       331 s~~~dg  336 (907)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            665444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.13  E-value=1.5  Score=44.42  Aligned_cols=117  Identities=14%  Similarity=0.145  Sum_probs=69.4

Q ss_pred             CEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEc-cCCCCCc
Q 002564          226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF-DTTDGDP  304 (907)
Q Consensus       226 ~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~-~~~~~~~  304 (907)
                      .+.+.++++||+.+.++...++.-.+|-...+.......  ....+..-.|.+++...+....+...+++.. .......
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            689999999998555555233333344333343333332  2237888899999877766666666777742 1222221


Q ss_pred             ceeEeccCCCCCCeEEEEecCCCEEEEEe---CCCCEEEEEcee
Q 002564          305 RLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQ  345 (907)
Q Consensus       305 ~~~~~~~~h~~~v~~i~~~~~g~~l~s~~---~dg~i~iwd~~~  345 (907)
                      ..+... .-...|..++++|||..++...   .++.|.+--+..
T Consensus       103 ~~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r  145 (253)
T PF10647_consen  103 VEVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR  145 (253)
T ss_pred             EEeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence            222221 1112899999999999888655   346666655543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.08  E-value=0.022  Score=39.76  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=30.4

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCce
Q 002564          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE  215 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~  215 (907)
                      ...|.+++|+|..++||.|+.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            567999999999999999999999999998 5554

>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=96.08  E-value=0.023  Score=50.86  Aligned_cols=69  Identities=19%  Similarity=0.254  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHhHHHHHHHHHHhhccc-cccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 002564          827 LSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGET-VRCHTKLQDKARKLLEVQSAVWQKIDKMFQSA  895 (907)
Q Consensus       827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  895 (907)
                      +.+..+|+|+.++-...|.....|..|+.+|+.|... |.+.|.+++.++.|....++-.+|++++.+..
T Consensus        61 ~~l~~LL~~ir~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteRH~~Rl~~L~q~s  130 (141)
T PF08625_consen   61 EQLEKLLRFIRDWNTNSRTSHVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTERHFQRLDRLLQKS  130 (141)
T ss_pred             HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999988754 57889999999999999999999999998764

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.07  E-value=1.7  Score=43.12  Aligned_cols=272  Identities=11%  Similarity=0.098  Sum_probs=152.3

Q ss_pred             CCcceEEEEEecCeEEEEEcCe-EEEEeCCee---EEE-EcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccc
Q 002564           55 LPKKIRALASYRDYTFAAYGNH-IAVVKRAHQ---VAT-WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAP  129 (907)
Q Consensus        55 ~~~~I~~la~~~~~~~~a~g~~-I~vw~~~~~---~~~-~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~  129 (907)
                      .+.-+..+.++.++.|+|-+.. +++.|...+   ... +-...+--.++...|++...+..|.-+.+.|+.+..... .
T Consensus        85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~-l  163 (370)
T COG5276          85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ-L  163 (370)
T ss_pred             hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce-e
Confidence            4566778889999999998766 999985332   222 222224445666789999999977778889998765521 1


Q ss_pred             eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEE
Q 002564          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIH  206 (907)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~  206 (907)
                      .............++++-    ++-+.+..|+-+.+-|+.+..   .+.... ....+.++..+++-.+++...+  -+.
T Consensus       164 agrya~~~~d~~~v~ISG----n~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~e--gvl  236 (370)
T COG5276         164 AGRYALPGGDTHDVAISG----NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDE--GVL  236 (370)
T ss_pred             eeeeccCCCCceeEEEec----CeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEccc--ceE
Confidence            344444544444555543    567778788889999997643   222222 2447888888888777776554  467


Q ss_pred             EEEccCCceEEEEeecCCCCEEEE-EEecCCCCEEEEEeCCCcEEEEECCCcee---eeeeecccccCeEEEEEecCCCE
Q 002564          207 VHNVRYDEELVTFTHSMRGAVTAL-AFSSDGQPLLASGASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPV  282 (907)
Q Consensus       207 iwd~~~~~~~~~~~~~~~~~v~~l-~fs~dg~~~l~sg~~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~  282 (907)
                      +-|..+.+....+..-....+.++ .|.-.++ +......+.-+.+-|+.+..-   ...+. .....-..+...  +.+
T Consensus       237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~-~~Yvadga~gl~~idisnp~spfl~ss~~-t~g~~a~gi~ay--~~y  312 (370)
T COG5276         237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGE-YAYVADGAKGLPIIDISNPPSPFLSSSLD-TAGYQAAGIRAY--GNY  312 (370)
T ss_pred             EEecCCCCCceEeeccccCCcccccceecccc-eeeeeccccCceeEeccCCCCCchhcccc-CCCccccceEEe--cCe
Confidence            777776654444432222333333 2332344 455555566666666654422   11121 111122233322  334


Q ss_pred             EEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEc
Q 002564          283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (907)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~  343 (907)
                      +..+..+ ...+-+....+    ......+....+.+...+-+.+.+.+...++-+.+|+.
T Consensus       313 ~yiadkn-~g~vV~~s~~s----~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         313 NYIADKN-TGAVVDASPPS----MMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             eEeccCC-ceEEEeCCChh----hcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            4444333 23333332221    11111222223333334445557888888999999875

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.00  E-value=4.9  Score=47.60  Aligned_cols=193  Identities=13%  Similarity=0.131  Sum_probs=112.1

Q ss_pred             eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcc--------cEEEEc--------------CCCCCCEEEEEec
Q 002564          102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFT--------PTCIMH--------------PDTYLNKVIVGSQ  159 (907)
Q Consensus       102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--------------p~~~~~~l~~~s~  159 (907)
                      .++.|+.++.++.|.-.|..+++...    ++.......        ....+.              |.....+|+.++.
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~lW----~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~  268 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEKW----KFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS  268 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEE----EEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC
Confidence            47788888888888888888888732    222111100        001111              1111258999999


Q ss_pred             CCcEEEEecCCCeEEEEEcCCCCCEE-------------EEEEcC--CCCEEEEEec----------CCeEEEEEccCCc
Q 002564          160 EGSLQLWNISTKKKLYEFKGWGSSIS-------------SCVSSP--ALDVVAVGCS----------DGKIHVHNVRYDE  214 (907)
Q Consensus       160 dg~i~iwd~~~~~~~~~~~~h~~~I~-------------~l~~sp--~~~~la~g~~----------dg~I~iwd~~~~~  214 (907)
                      |+.+.-.|.++|+....|.. .+.|.             .+.-+|  .++.+++|+.          +|.|+-+|.++|+
T Consensus       269 Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       269 DARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             CCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence            99999999999999988753 22221             112222  2346666643          6889999999999


Q ss_pred             eEEEEeecCC--------C--------CE-EEEEEecCCCCEEEEEe------------------CCCcEEEEECCCcee
Q 002564          215 ELVTFTHSMR--------G--------AV-TALAFSSDGQPLLASGA------------------SSGVISIWNLEKRRL  259 (907)
Q Consensus       215 ~~~~~~~~~~--------~--------~v-~~l~fs~dg~~~l~sg~------------------~dg~I~iwd~~~~~~  259 (907)
                      .+-.+.....        +        .+ ..+++.++.. ++..+.                  ..+.|.-.|.++|+.
T Consensus       348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~  426 (764)
T TIGR03074       348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE  426 (764)
T ss_pred             EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeCCCCce
Confidence            9888763210        1        11 1233444333 222211                  235677778888888


Q ss_pred             eeeeecccc--------cCeEEEEEec-CCC---EEEEEcCCCcEEEEEccCC
Q 002564          260 QSVIREAHD--------NAIISLHFFA-NEP---VLMSASADNSIKMWIFDTT  300 (907)
Q Consensus       260 ~~~~~~~h~--------~~V~~l~~~~-~~~---~l~s~~~d~~i~vw~~~~~  300 (907)
                      .-.++..|.        ....-+.+.. +|+   .++.++.+|.+.+.|-+++
T Consensus       427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG  479 (764)
T TIGR03074       427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG  479 (764)
T ss_pred             EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence            777763232        0111112222 442   7888888888887766554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.92  E-value=1.7  Score=41.66  Aligned_cols=141  Identities=9%  Similarity=0.139  Sum_probs=86.6

Q ss_pred             CcEEEEEEcCCCCEEEEEecC---------CeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEE-eCCCeEEEEE-
Q 002564          475 GEVVGVACDSTNTLMISAGYH---------GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFD-  543 (907)
Q Consensus       475 ~~v~~l~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~dg~I~v~d-  543 (907)
                      ...+.-.++|+|++.+-.-.|         |.++.|-.. ++....+..-.--+.++|+.+.+.+... +.+-+|.-|| 
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            345556678999985432222         344444322 2222222222344567888877765544 4566787777 


Q ss_pred             -ccccee-----EEEeec---CC-CCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCC-Cc
Q 002564          544 -VVALRM-----VRKFEG---HT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-MD  611 (907)
Q Consensus       544 -~~~~~~-----~~~~~~---h~-~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spd-g~  611 (907)
                       ..+|..     +..++.   .. -.--.++...+|.+.+++-..++|...|..+|+.+..+..+.+ +++++|--. -+
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d  267 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLD  267 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence             555532     333332   11 1223456667888888888889999999999999999998877 999999643 33


Q ss_pred             eEEEE
Q 002564          612 VLATA  616 (907)
Q Consensus       612 ~lat~  616 (907)
                      .|.+.
T Consensus       268 ~~yvT  272 (310)
T KOG4499|consen  268 ILYVT  272 (310)
T ss_pred             EEEEE
Confidence            44443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.74  E-value=0.36  Score=52.26  Aligned_cols=143  Identities=15%  Similarity=0.135  Sum_probs=82.4

Q ss_pred             CcEEEEEEcCCCCEEEEEe-----------cCC-eEEEEECCC--Cce--eeeeec-CcceeEEEEeeCCCEEEEEeCCC
Q 002564          475 GEVVGVACDSTNTLMISAG-----------YHG-DIKVWDFKG--RDL--KSRWEV-GCSLVKIVYHRVNGLLATVADDL  537 (907)
Q Consensus       475 ~~v~~l~~s~~~~~l~s~~-----------~dg-~i~iwd~~~--~~~--~~~~~~-~~~i~~~~~s~~~~~la~~~~dg  537 (907)
                      .....|+|+++|+++++..           ..+ .|.+++-.+  ++.  ...+.. ......+++.+++  |.+++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            4567899999998877653           223 677776443  322  222322 2456788998888  44444444


Q ss_pred             eEEEEEccc-------cee-EEEeec----CCCCeeeEEECCCCcEEEEEeCC-------------------CcEEEEEc
Q 002564          538 VIRLFDVVA-------LRM-VRKFEG----HTDRITDFCFSEDGKWLLSSGMD-------------------GSLRIWDV  586 (907)
Q Consensus       538 ~I~v~d~~~-------~~~-~~~~~~----h~~~I~~l~fspdg~~l~s~s~D-------------------g~I~vwd~  586 (907)
                      ..++.|...       .+. +..+..    +......++|.|||++.++.+..                   |.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            333445432       112 222322    23457789999999877755521                   34555555


Q ss_pred             CCCceeeEeeeCCceEEEEECCCCceEEEEEec
Q 002564          587 ILARQIDAIHVDVSITALSLSPNMDVLATAHVD  619 (907)
Q Consensus       587 ~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d  619 (907)
                      .+++......+......++|+|+|+++++-..+
T Consensus       172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             CCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence            544432222333447899999999988765533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.68  E-value=0.64  Score=53.22  Aligned_cols=139  Identities=12%  Similarity=0.081  Sum_probs=73.9

Q ss_pred             cCCCCEEEEEecC------CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCC------CcEEEEECCCc
Q 002564          190 SPALDVVAVGCSD------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS------GVISIWNLEKR  257 (907)
Q Consensus       190 sp~~~~la~g~~d------g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d------g~I~iwd~~~~  257 (907)
                      +..+.++++|+.+      ..+..||..++.............-.+++... |. +.++|+.+      .++..||..++
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~~-lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-GK-LYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-CE-EEEEccccCCCcccceEEEecCCCC
Confidence            3345677777776      36788998887544443333333445555554 45 88888888      35778888877


Q ss_pred             eeeeeeecccccCe-EEEEEecCCCEEEEEcCCCc-----EEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEE
Q 002564          258 RLQSVIREAHDNAI-ISLHFFANEPVLMSASADNS-----IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHIL  330 (907)
Q Consensus       258 ~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~~~d~~-----i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~  330 (907)
                      +-...-. -..... .+++ .-+|.+.++||.||.     +-.||..+.  .+......   ..+........ +|...+
T Consensus       360 ~W~~~a~-M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m---~~~r~~~gv~~~~g~iYi  432 (571)
T KOG4441|consen  360 QWTPVAP-MNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPM---LTRRSGHGVAVLGGKLYI  432 (571)
T ss_pred             ceeccCC-ccCccccceeE-EECCEEEEEeccccccccccEEEecCCCC--cccccCCC---CcceeeeEEEEECCEEEE
Confidence            6443222 111111 1222 226778888888864     455544332  23332211   11222222222 566666


Q ss_pred             EEeCCCC
Q 002564          331 SAGQDRA  337 (907)
Q Consensus       331 s~~~dg~  337 (907)
                      +||.++.
T Consensus       433 ~GG~~~~  439 (571)
T KOG4441|consen  433 IGGGDGS  439 (571)
T ss_pred             EcCcCCC
Confidence            7776653

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.67  E-value=4.1  Score=44.18  Aligned_cols=66  Identities=11%  Similarity=0.017  Sum_probs=37.6

Q ss_pred             cCeEEEEEecCCCEEEEEc-----------CCC-cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCC
Q 002564          269 NAIISLHFFANEPVLMSAS-----------ADN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR  336 (907)
Q Consensus       269 ~~V~~l~~~~~~~~l~s~~-----------~d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg  336 (907)
                      .....|+|.++|+++++-.           ..+ .|.+++-...++.......+......+..+++.++|  |+.+....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            4567888888888776643           122 565554333333333333333344567889999888  44444443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.63  E-value=3.3  Score=42.83  Aligned_cols=148  Identities=15%  Similarity=0.203  Sum_probs=78.3

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC-
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-  503 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~-  503 (907)
                      ..+..+..+++|++++++.......-|+.....-...-        ......|..|.|.|++.+.+.+ ..|.|++=+. 
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--------r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~  215 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--------RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP  215 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--------cCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence            66788888999999999866655566765432111111        2456789999999998766644 7888888772 


Q ss_pred             CCCceeee--e---ecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee---cCCCCeeeEEECCCCcEEEEE
Q 002564          504 KGRDLKSR--W---EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSS  575 (907)
Q Consensus       504 ~~~~~~~~--~---~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~---~h~~~I~~l~fspdg~~l~s~  575 (907)
                      ...+.-..  .   .....+..++|.+++...|+|+.. .+ +...+.|+--.+-+   .-....+.+.|.++.+-++. 
T Consensus       216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-  292 (302)
T PF14870_consen  216 DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-  292 (302)
T ss_dssp             TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred             CCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-
Confidence            22211111  1   122458899999988888877643 33 33445554433332   23456788888766555554 


Q ss_pred             eCCCcEEEE
Q 002564          576 GMDGSLRIW  584 (907)
Q Consensus       576 s~Dg~I~vw  584 (907)
                      +.+|.|--|
T Consensus       293 G~~G~ll~~  301 (302)
T PF14870_consen  293 GQDGVLLRY  301 (302)
T ss_dssp             -STTEEEEE
T ss_pred             CCCcEEEEe
Confidence            578876544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.55  E-value=1.6  Score=49.06  Aligned_cols=211  Identities=15%  Similarity=0.148  Sum_probs=100.9

Q ss_pred             CCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCc
Q 002564          225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP  304 (907)
Q Consensus       225 ~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~  304 (907)
                      +.+-++..+|..-.-+.  +..-.|+||++ +|+++..+. ...+.+..+.|+.+. .|++...+|++.+|++....-..
T Consensus        44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~-w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~  118 (829)
T KOG2280|consen   44 GGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRIL-WKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIES  118 (829)
T ss_pred             CCceEEEeccccccccc--ccceeEEEEec-cccchHHHH-hcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcc
Confidence            44445555553210111  33456899996 666666665 333489999999877 56677789999999875432111


Q ss_pred             ceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccc
Q 002564          305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI  384 (907)
Q Consensus       305 ~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  384 (907)
                      . -.-.......|..+.+..+|-.+++  .+|.+.+-.-.......++..         +.    ...+++ .+..+...
T Consensus       119 ~-svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~d---------iP----~~~~~~-~~Wt~~~~  181 (829)
T KOG2280|consen  119 N-SVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPD---------IP----YNELPK-SCWTVFQP  181 (829)
T ss_pred             c-ccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCC---------CC----CccCCC-cceeEecC
Confidence            0 0001122345666777766644443  344444332111111111100         00    000000 01110000


Q ss_pred             ccccccceEEEeeC-CceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeee
Q 002564          385 RERDWCNVVTCHMD-TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL  463 (907)
Q Consensus       385 ~~~~~~~~~~~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~  463 (907)
                         .........-+ .--..+.-........+.+.   ...+.+..+.+||++++++.-+..|.|.+-+....+....+.
T Consensus       182 ---~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~---~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  182 ---HRQSTILLDVDVAVGLHICQVEESRVQLHALS---WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             ---CCcceeEEeechhhhhcccceecccccccccC---CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence               00000000000 00000000001111011111   113678889999999999999999999999988777766654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.49  E-value=4.7  Score=43.72  Aligned_cols=150  Identities=11%  Similarity=0.087  Sum_probs=84.3

Q ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEEccCCceE-EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce---
Q 002564          183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL-VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR---  258 (907)
Q Consensus       183 ~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~-~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~---  258 (907)
                      ....+..++++.+++++..-..++-||  .|... ..........++++.|.+++. +++++ ..|.+. |....++   
T Consensus       240 sf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l~-~S~d~G~~~~  314 (398)
T PLN00033        240 TFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGG-LWLLT-RGGGLY-VSKGTGLTEE  314 (398)
T ss_pred             ceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCC-EEEEe-CCceEE-EecCCCCccc
Confidence            345567788888888776533233343  33322 333333356899999999998 55544 556653 4444443   


Q ss_pred             --eeeeeecc-cccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCC
Q 002564          259 --LQSVIREA-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  335 (907)
Q Consensus       259 --~~~~~~~~-h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d  335 (907)
                        ........ -...+.++.|.+++..+++| ..|.+...  ......+........-......+.|.++++ .+..+.+
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s--~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~  390 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS--TDGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGND  390 (398)
T ss_pred             ccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe--CCCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCC
Confidence              12222211 22358899999887655554 56766655  222223333322233456778888877654 4455567


Q ss_pred             CCEEEE
Q 002564          336 RAFRLF  341 (907)
Q Consensus       336 g~i~iw  341 (907)
                      |.|.-|
T Consensus       391 G~il~~  396 (398)
T PLN00033        391 GVLLRY  396 (398)
T ss_pred             cEEEEe
Confidence            766544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.44  E-value=0.39  Score=54.26  Aligned_cols=111  Identities=11%  Similarity=0.125  Sum_probs=76.4

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee-cCCCCeeeEEE--CCCCcEEEEEeCCCcEEEEEc------
Q 002564          516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCF--SEDGKWLLSSGMDGSLRIWDV------  586 (907)
Q Consensus       516 ~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~-~h~~~I~~l~f--spdg~~l~s~s~Dg~I~vwd~------  586 (907)
                      ..++.+.-+.-++..++-++...+.|||...+.....-. ...+.|.++.|  .|||+.+++.|..+.|.+|--      
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344445555555555555556689999999887543322 35688999988  468999999999999999843      


Q ss_pred             ---CCCceeeEeee----CCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          587 ---ILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       587 ---~~~~~~~~~~~----~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                         ++...+..+..    ..+|.+..|.++|.+++.++.   .++|++-.
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN---qlfv~dk~  156 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN---QLFVFDKW  156 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC---EEEEECCC
Confidence               22334444432    346999999999987776642   48998753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=95.43  E-value=0.8  Score=50.87  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=50.4

Q ss_pred             ecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564          554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       554 ~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~  628 (907)
                      ..|.+.|.-+..+..+..|..-...-.+.++|+.+.+....+.   -++-+.|-|..+.++.-+.|.  +++|-+
T Consensus       334 inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmiln---fcsymqwvp~sdvivaqn~dn--l~iwyn  403 (1636)
T KOG3616|consen  334 INHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMILN---FCSYMQWVPGSDVIVAQNGDN--LCIWYN  403 (1636)
T ss_pred             ccccccccceeccchhhhhhcccccceeEEEEcccchHHHHHH---HhhhheeccCcceEEecCCCc--eEEEec
Confidence            3488888888888777777766666678888988654322221   155688999999888877775  999985

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.33  E-value=1.1  Score=51.40  Aligned_cols=228  Identities=11%  Similarity=0.090  Sum_probs=113.1

Q ss_pred             CCEEEEEecC------CcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecC------CcEEEEecCC
Q 002564          103 GEHILSIDID------GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE------GSLQLWNIST  170 (907)
Q Consensus       103 g~~l~s~~~d------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~d------g~i~iwd~~~  170 (907)
                      +..++.|+.+      ..+..+|..+++-.  ....+  .......++..-.+  ...++|+.+      .++..||..+
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~--~~a~m--~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWS--SLAPM--PSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEe--ecCCC--CcccccccEEEECC--EEEEEccccCCCcccceEEEecCCC
Confidence            3444555555      34778887776431  11111  22222222333333  467778888      3567778766


Q ss_pred             CeEE--EEEcCCCCCEEEEEEcCCCCEEEEEecCCe-----EEEEEccCCceEEEEeecC-CCCEEEEEEecCCCCEEEE
Q 002564          171 KKKL--YEFKGWGSSISSCVSSPALDVVAVGCSDGK-----IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLAS  242 (907)
Q Consensus       171 ~~~~--~~~~~h~~~I~~l~~sp~~~~la~g~~dg~-----I~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~dg~~~l~s  242 (907)
                      ++=.  ..+........  .-.-+|.+-|+|+.||.     +..||..+.+--..-.... ......+.  -+|. +.++
T Consensus       359 ~~W~~~a~M~~~R~~~~--v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~-iYi~  433 (571)
T KOG4441|consen  359 NQWTPVAPMNTKRSDFG--VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGK-LYII  433 (571)
T ss_pred             CceeccCCccCccccce--eEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCE-EEEE
Confidence            5511  11111111111  12236778889988854     7778877665332221111 11122222  2566 7777


Q ss_pred             EeCC------CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCc-----EEEEEccCCCCCcceeEecc
Q 002564          243 GASS------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS-----IKMWIFDTTDGDPRLLRFRS  311 (907)
Q Consensus       243 g~~d------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~-----i~vw~~~~~~~~~~~~~~~~  311 (907)
                      |+.+      ..+..||..+++....-...-...-..++. -++.+.+.||.|+.     |..+|.  ....+..+....
T Consensus       434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp--~~~~W~~v~~m~  510 (571)
T KOG4441|consen  434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDP--ETNQWTMVAPMT  510 (571)
T ss_pred             cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcC--CCCceeEcccCc
Confidence            7744      457788888775433322111111122333 35667788887763     445544  344455553333


Q ss_pred             CCCCCCeEEEEecCCCEEEEEeCCCC-----EEEEEceec
Q 002564          312 GHSAPPLCIRFYANGRHILSAGQDRA-----FRLFSVIQD  346 (907)
Q Consensus       312 ~h~~~v~~i~~~~~g~~l~s~~~dg~-----i~iwd~~~~  346 (907)
                      .....+..+..  ++...+.|+.||.     +..||..++
T Consensus       511 ~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  511 SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence            33332222222  5677788887763     555655443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.28  E-value=6  Score=43.63  Aligned_cols=150  Identities=13%  Similarity=0.147  Sum_probs=86.8

Q ss_pred             CCEEEEEEcCCCCEEEEEe--cCCeEEEEEccCCceEEEEeecCCCCEEEEEEecC----CCCEEEEEeCCCcEEEEECC
Q 002564          182 SSISSCVSSPALDVVAVGC--SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD----GQPLLASGASSGVISIWNLE  255 (907)
Q Consensus       182 ~~I~~l~~sp~~~~la~g~--~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d----g~~~l~sg~~dg~I~iwd~~  255 (907)
                      .+|..++|..-.+++.+.-  .+|.+++=|   .+.+..|     ..|..++|.|-    ...+||+- ....|.||.+.
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF-----EhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF-----EHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLC   90 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc-----ceeeeeeecCcccCCCCceEEEe-ccceEEEEEec
Confidence            4677788875444444432  234433322   1233333     35899999885    33355554 57899999875


Q ss_pred             -----Cceeeeeeeccc--c--cCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC
Q 002564          256 -----KRRLQSVIREAH--D--NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG  326 (907)
Q Consensus       256 -----~~~~~~~~~~~h--~--~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g  326 (907)
                           .++.+....-..  .  ---..+.|+|....|+.-.....-.++++...+.  +..... ...+.|.|.+|.+||
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rVkaDi-~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RVKADI-KTSGLIHCACWTKDG  167 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eEEEec-cCCceEEEEEecCcC
Confidence                 223332222011  1  1234678999998887766554444555554432  232222 556789999999999


Q ss_pred             CEEEEEeCC-CCEEEEEc
Q 002564          327 RHILSAGQD-RAFRLFSV  343 (907)
Q Consensus       327 ~~l~s~~~d-g~i~iwd~  343 (907)
                      +.|+.+-.. =.-++||-
T Consensus       168 ~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             CEEEEEeCCeEEEEEecC
Confidence            988876433 23456763

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.26  E-value=0.26  Score=57.50  Aligned_cols=150  Identities=7%  Similarity=-0.012  Sum_probs=95.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCccceeeecc---ccccccCcCCcEEEEEEcCCC-CEEEEEecCCeE
Q 002564          425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDM---SERSNYAHNGEVVGVACDSTN-TLMISAGYHGDI  498 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~---~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i  498 (907)
                      ..+..+.+.+|+...++-....  .|+.||+.+-.........   .............++.|.|.- ...+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            4566677777876655544333  7888998754332211100   000111223445677787754 234566678888


Q ss_pred             EEEECCCC-ceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecC----CCCeeeEEECCCCcEEE
Q 002564          499 KVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLL  573 (907)
Q Consensus       499 ~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h----~~~I~~l~fspdg~~l~  573 (907)
                      ++..+.-. .....+......++++|+|.|+.+++|..+|++.-|... ++..+.+.+.    ..+|.+++|-..-.|++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            88876533 333445666889999999999999999999999888643 4444444332    36799999988777777


Q ss_pred             EE
Q 002564          574 SS  575 (907)
Q Consensus       574 s~  575 (907)
                      +-
T Consensus       260 vy  261 (1405)
T KOG3630|consen  260 VY  261 (1405)
T ss_pred             Ee
Confidence            53

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.22  E-value=1  Score=51.60  Aligned_cols=150  Identities=13%  Similarity=0.183  Sum_probs=97.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCccce------eeeccccc--------cccCcCCcEEEEEEcC--CCCEEEEEecCCeEE
Q 002564          436 GNFAVLGTAGGWIERFNLQSGISRG------SYLDMSER--------SNYAHNGEVVGVACDS--TNTLMISAGYHGDIK  499 (907)
Q Consensus       436 g~~l~~g~~dg~i~i~d~~~~~~~~------~~~~~~~~--------~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~  499 (907)
                      +++++++. .+.|.+|+........      .+...+..        ........|+.|.+..  +...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            77788765 7789999986543321      11100000        0001223466666654  346889999999999


Q ss_pred             EEECCC-------C-------------ceeeeeecCcceeEEEEe--eCCCEEEEEeCCCeEEEEEcccc--ee-EEEee
Q 002564          500 VWDFKG-------R-------------DLKSRWEVGCSLVKIVYH--RVNGLLATVADDLVIRLFDVVAL--RM-VRKFE  554 (907)
Q Consensus       500 iwd~~~-------~-------------~~~~~~~~~~~i~~~~~s--~~~~~la~~~~dg~I~v~d~~~~--~~-~~~~~  554 (907)
                      +|..++       .             ++...+..+...+.++++  ...++||+++....|.||-....  +. ...-.
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            996521       0             122333455788999999  88899999999998888865432  11 11111


Q ss_pred             cCCCCeeeEEECCCC------cEEEEEeCCCcEEEEEc
Q 002564          555 GHTDRITDFCFSEDG------KWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       555 ~h~~~I~~l~fspdg------~~l~s~s~Dg~I~vwd~  586 (907)
                      .|...|.+|+|-++.      .+|++++-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            256779999997743      27888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK10115 protease 2; Provisional

Probab=95.19  E-value=9.1  Score=45.25  Aligned_cols=60  Identities=13%  Similarity=0.049  Sum_probs=39.1

Q ss_pred             CCEEEEEEecCCCCEEEEE-eCC----CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC
Q 002564          225 GAVTALAFSSDGQPLLASG-ASS----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA  288 (907)
Q Consensus       225 ~~v~~l~fs~dg~~~l~sg-~~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~  288 (907)
                      -.+..+.++|||+ +|+.+ +.+    ..|++.|+.++..+.... ...  -..++|.+|++.|+.+..
T Consensus       127 ~~l~~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~--~~~~~w~~D~~~~~y~~~  191 (686)
T PRK10115        127 YTLGGMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNV--EPSFVWANDSWTFYYVRK  191 (686)
T ss_pred             EEEeEEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCc--ceEEEEeeCCCEEEEEEe
Confidence            3567788999999 55544 333    368899998886433322 111  256999999986666544

>PHA03098 kelch-like protein; Provisional

Probab=95.17  E-value=0.66  Score=53.44  Aligned_cols=187  Identities=11%  Similarity=0.056  Sum_probs=85.1

Q ss_pred             eeCCEEEEEecCC------cEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecC-----CcEEEEecC
Q 002564          101 LFGEHILSIDIDG------NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----GSLQLWNIS  169 (907)
Q Consensus       101 ~~g~~l~s~~~dg------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~d-----g~i~iwd~~  169 (907)
                      .++..++.|+.++      .+..||..+.+-..  +..+..+..  ...+..-++  ...+.|+.+     ..+..||..
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~--~~~~~~~R~--~~~~~~~~~--~lyv~GG~~~~~~~~~v~~yd~~  366 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK--VPELIYPRK--NPGVTVFNN--RIYVIGGIYNSISLNTVESWKPG  366 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE--CCCCCcccc--cceEEEECC--EEEEEeCCCCCEecceEEEEcCC
Confidence            4455555555432      46677776654421  111111111  112222344  456667654     347778876


Q ss_pred             CCeEEE--EEcCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564          170 TKKKLY--EFKGWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (907)
Q Consensus       170 ~~~~~~--~~~~h~~~I~~l~~sp~~~~la~g~~d------g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~  241 (907)
                      +++=..  .+....... ++ ..-++++.+.|+.+      ..+..||..+++-...-... .......+...++. +.+
T Consensus       367 ~~~W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~-iyv  442 (534)
T PHA03098        367 ESKWREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP-ISHYGGCAIYHDGK-IYV  442 (534)
T ss_pred             CCceeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC-ccccCceEEEECCE-EEE
Confidence            653221  111111111 11 22356666777632      45888998876533221111 11111112233555 667


Q ss_pred             EEeCC--------CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCC-----CcEEEEEcc
Q 002564          242 SGASS--------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-----NSIKMWIFD  298 (907)
Q Consensus       242 sg~~d--------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-----~~i~vw~~~  298 (907)
                      .|+.+        ..+.+||..+++-...-.......-.+++. -++..++.||.+     +.+.+||.+
T Consensus       443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~  511 (534)
T PHA03098        443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDK  511 (534)
T ss_pred             ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCC
Confidence            77643        238889988775433221111111112222 266677777654     345555544

>PRK13684 Ycf48-like protein; Provisional

Probab=95.17  E-value=5.4  Score=42.48  Aligned_cols=149  Identities=13%  Similarity=0.086  Sum_probs=85.3

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~  504 (907)
                      ..+..+.+.+++.++++|. .|.+..-.-..++.-....       ..-...+.++.+.++++.++.+ ..|.+++=..+
T Consensus       173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~-------~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d  243 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQ-------RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD  243 (334)
T ss_pred             ceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEee-------CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence            5678888999887776654 4544432111222122221       2344678999999998876654 45776543334


Q ss_pred             CCceeeeeec-----CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee---cCCCCeeeEEECCCCcEEEEEe
Q 002564          505 GRDLKSRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSG  576 (907)
Q Consensus       505 ~~~~~~~~~~-----~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~---~h~~~I~~l~fspdg~~l~s~s  576 (907)
                      .+..-.....     ...+..+.+.+++..++++ .+|.+. .....++.-....   +-....+.+.|..+++.++ ++
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G  320 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LG  320 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-EC
Confidence            4432222111     2457788899887766655 456554 3344444333332   2224577888887777666 45


Q ss_pred             CCCcEEEEE
Q 002564          577 MDGSLRIWD  585 (907)
Q Consensus       577 ~Dg~I~vwd  585 (907)
                      ..|.|--|+
T Consensus       321 ~~G~il~~~  329 (334)
T PRK13684        321 QRGVLLRYV  329 (334)
T ss_pred             CCceEEEec
Confidence            678887775

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.08  E-value=0.074  Score=37.17  Aligned_cols=35  Identities=9%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             ecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccce
Q 002564          513 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR  548 (907)
Q Consensus       513 ~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~  548 (907)
                      .....|.+++|+|...++|.++.+|.|.+|.+ +++
T Consensus         9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen    9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            34467999999999999999999999999988 444

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.92  E-value=6.2  Score=41.95  Aligned_cols=64  Identities=11%  Similarity=0.116  Sum_probs=40.0

Q ss_pred             CCeeeEEECC-------CCcEEEEEeCCCcEEEEEcCCCceee-Eee----eCCceEEEEECCCCceEEEEEecCC
Q 002564          558 DRITDFCFSE-------DGKWLLSSGMDGSLRIWDVILARQID-AIH----VDVSITALSLSPNMDVLATAHVDQN  621 (907)
Q Consensus       558 ~~I~~l~fsp-------dg~~l~s~s~Dg~I~vwd~~~~~~~~-~~~----~~~~v~~l~~spdg~~lat~~~d~~  621 (907)
                      ..++.+.|-.       .|.++++.-..+.|....+..+..+. .-.    ....+..+++.|||.+.++...++.
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~  328 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGK  328 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTT
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCe
Confidence            4566777753       45567766666778887876443332 211    1225999999999999998887774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.87  E-value=0.026  Score=63.49  Aligned_cols=156  Identities=17%  Similarity=0.208  Sum_probs=94.9

Q ss_pred             cCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECC--CCceeeeeec------CcceeEEEEee---CCCEEEEEeCCCe
Q 002564          471 YAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK--GRDLKSRWEV------GCSLVKIVYHR---VNGLLATVADDLV  538 (907)
Q Consensus       471 ~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~--~~~~~~~~~~------~~~i~~~~~s~---~~~~la~~~~dg~  538 (907)
                      ++..+.|-.+.|.... ..+.  -.-|.+.|||+.  .|+....+..      ...+..+.|.|   +..++.++..++.
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~  206 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE  206 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence            3666777777774321 1111  223678889875  4444333321      24445555554   6678888888999


Q ss_pred             EEEEEcccceeEEEeecCCCCeeeEE-----------ECCCCcEEEEEeCCCcEEEEEcC-CC----ceeeEeeeCC--c
Q 002564          539 IRLFDVVALRMVRKFEGHTDRITDFC-----------FSEDGKWLLSSGMDGSLRIWDVI-LA----RQIDAIHVDV--S  600 (907)
Q Consensus       539 I~v~d~~~~~~~~~~~~h~~~I~~l~-----------fspdg~~l~s~s~Dg~I~vwd~~-~~----~~~~~~~~~~--~  600 (907)
                      |++..+++... ..+.+|...+++++           .||||+.++.++.||.+++|.+. +|    +|+...+.|.  +
T Consensus       207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p  285 (1283)
T KOG1916|consen  207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHP  285 (1283)
T ss_pred             eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCC
Confidence            99887765432 34556877766554           58999999999999999999764 22    3444444343  2


Q ss_pred             -eEEEEECCC---------CceEEEEEecCCeEEEeeccc
Q 002564          601 -ITALSLSPN---------MDVLATAHVDQNGVYLWVNRC  630 (907)
Q Consensus       601 -v~~l~~spd---------g~~lat~~~d~~~i~lW~~~~  630 (907)
                       |..+ +..+         -.++++++.-++.+++|.-..
T Consensus       286 ~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~  324 (1283)
T KOG1916|consen  286 RVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP  324 (1283)
T ss_pred             ceeee-eccccccCCccceeEEEEecccCCcceeEeeccc
Confidence             3333 3221         235666666666799997543

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=94.87  E-value=12  Score=44.95  Aligned_cols=147  Identities=18%  Similarity=0.132  Sum_probs=77.3

Q ss_pred             CEEEEEeC---------CCcEEEEeCCC-----CccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564          437 NFAVLGTA---------GGWIERFNLQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD  502 (907)
Q Consensus       437 ~~l~~g~~---------dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd  502 (907)
                      .++++|+.         .|.+++||+-.     |++...... ........+++|..++=- +|.++ ++. ...|.+|+
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~Kl-Kel~~eE~KGtVsavceV-~G~l~-~~~-GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKL-KELYIEEQKGTVSAVCEV-RGHLL-SSQ-GQKIIVRK 1122 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCccccee-eeeehhhcccceEEEEEe-ccEEE-Ecc-CcEEEEEE
Confidence            57888863         58999999632     222111100 000012455677766533 45444 333 35789999


Q ss_pred             CC-CCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-eeEEEeec--CCCCeeeEEECCCCc--EEEEEe
Q 002564          503 FK-GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEG--HTDRITDFCFSEDGK--WLLSSG  576 (907)
Q Consensus       503 ~~-~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-~~~~~~~~--h~~~I~~l~fspdg~--~l~s~s  576 (907)
                      ++ ...++..--..-++.-.....-.+++..|.--..|.+.-.+.. ..+.-+..  ..-.+.++.|--||.  +++++.
T Consensus      1123 l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred             eccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence            84 4443322222222322222333566777766666666554432 11222221  123477778877775  567788


Q ss_pred             CCCcEEEEEcC
Q 002564          577 MDGSLRIWDVI  587 (907)
Q Consensus       577 ~Dg~I~vwd~~  587 (907)
                      .|++|++|-..
T Consensus      1203 a~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1203 ADRNIHVYMYA 1213 (1366)
T ss_pred             CCCcEEEEEeC
Confidence            89999998654

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=94.85  E-value=9.3  Score=43.58  Aligned_cols=392  Identities=11%  Similarity=0.099  Sum_probs=169.2

Q ss_pred             ccEEEEcCCCCCCEEEEEecCCcEEEEecCC--------CeEE-EEEcCCCCCEEEEEEcC-----CCCEEEEE--ecCC
Q 002564          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNIST--------KKKL-YEFKGWGSSISSCVSSP-----ALDVVAVG--CSDG  203 (907)
Q Consensus       140 ~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~--------~~~~-~~~~~h~~~I~~l~~sp-----~~~~la~g--~~dg  203 (907)
                      ...+++.|.+  +.++++..+|.+.++.++.        ...+ ..+ .....|..++|-.     +...+|+-  ...+
T Consensus        46 G~~l~vDP~~--R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~  122 (504)
T PF10433_consen   46 GQYLAVDPSG--RCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLAILYVDSQR  122 (504)
T ss_dssp             --EEEE-TTS--SEEEEEEBTTEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred             CcEEEECCcC--CEEEEEecCCeEEEEEecccccccccccccccccc-cCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence            4568899999  8999999999999998877        1111 111 1256778888875     22344432  2222


Q ss_pred             --eEEEEEccCCceEEE----------EeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEE-CCCc---eeeeeeec--
Q 002564          204 --KIHVHNVRYDEELVT----------FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN-LEKR---RLQSVIRE--  265 (907)
Q Consensus       204 --~I~iwd~~~~~~~~~----------~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd-~~~~---~~~~~~~~--  265 (907)
                        .+..|+......+..          +......+..-+....... .+++++. + +.+|. ....   .....+..  
T Consensus       123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g-gllV~~~-~-~i~y~~~~~~~~~~~~~~~~~~~  199 (504)
T PF10433_consen  123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG-GLLVGGE-N-IIIYKNHLIGSGDYSFLSIPSPP  199 (504)
T ss_dssp             EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT--SEEEEES-S-EEEEEE------TTEEEEE--H-
T ss_pred             cceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc-EEEEECC-E-EEEEecccccccccccccccCCc
Confidence              244444222221111          1111112222222222222 3444442 3 33443 2111   11111110  


Q ss_pred             -ccccCeEEEEE-------ecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCC-CCCCeEEEEecCC-CEEEEEeCC
Q 002564          266 -AHDNAIISLHF-------FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANG-RHILSAGQD  335 (907)
Q Consensus       266 -~h~~~V~~l~~-------~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~g-~~l~s~~~d  335 (907)
                       ....-+.+..+       ..++..++.+..+|.+....+.....  .+....-+. .....++.+..+| .+++.|+.-
T Consensus       200 ~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~--~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~  277 (504)
T PF10433_consen  200 SSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG--SISITYLGTLCSIASSLTYLKNGGDYLFVGSEF  277 (504)
T ss_dssp             HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE--EEEEEEEEE--S-ESEEEEESTT--EEEEEESS
T ss_pred             cCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC--eEEEEEcCCcCChhheEEEEcCCCEEEEEEEec
Confidence             11222333332       34567888899999998887765432  212222233 5566777777655 467777765


Q ss_pred             CCEEEEEce--ecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccccccc------ceEEEeeC--CceEEEE
Q 002564          336 RAFRLFSVI--QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC------NVVTCHMD--TAQAYVW  405 (907)
Q Consensus       336 g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~--~~~v~~w  405 (907)
                      |.=.++.+.  .-....                  .-....|+..+...........      .+++|...  .+.+++.
T Consensus       278 gds~l~~~~~~~l~~~~------------------~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~l  339 (504)
T PF10433_consen  278 GDSQLLQISLSNLEVLD------------------SLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRIL  339 (504)
T ss_dssp             S-EEEEEEESESEEEEE------------------EE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEE
T ss_pred             CCcEEEEEeCCCcEEEE------------------eccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEE
Confidence            544444333  111121                  2234678888877654333333      66666543  4566655


Q ss_pred             Eeeeceec-ceeeecCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEeCC---CCccceeeeccccccccCcCCcEEEE
Q 002564          406 RLQNFVLG-EHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQ---SGISRGSYLDMSERSNYAHNGEVVGV  480 (907)
Q Consensus       406 ~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~h~~~v~~l  480 (907)
                      +..-...+ .......++ ...+..+.... ++.++++...+. -.++.+.   .......... .  ........+.+-
T Consensus       340 r~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~-~--~f~~~~~Tl~~~  414 (504)
T PF10433_consen  340 RNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEE-D--GFDTDEPTLAAG  414 (504)
T ss_dssp             EESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE------TS-SSS-EEEEE
T ss_pred             eccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhh-c--cCCCCCCCeEEE
Confidence            43211110 011111111 12333333322 246777766554 3444443   2222211100 0  000111122222


Q ss_pred             EEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC--cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee-c--
Q 002564          481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-G--  555 (907)
Q Consensus       481 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~-~--  555 (907)
                      .+.  +..++=... ..|++.+...++....+...  ..|.+.+.  ++.+++++..++.+..+.+.......... .  
T Consensus       415 ~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (504)
T PF10433_consen  415 NVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETI  489 (504)
T ss_dssp             EET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----
T ss_pred             EcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeecccc
Confidence            222  333333332 45788888777777766554  34444444  46778888888999999988776643322 1  


Q ss_pred             --CCCCeeeEEECC
Q 002564          556 --HTDRITDFCFSE  567 (907)
Q Consensus       556 --h~~~I~~l~fsp  567 (907)
                        ....|.++..+|
T Consensus       490 ~~~~~eis~l~i~p  503 (504)
T PF10433_consen  490 LELDNEISCLSIEP  503 (504)
T ss_dssp             EE-SS-EEEEE---
T ss_pred             ccCCCceEEEEeCC
Confidence              457788887766

...

>PHA03098 kelch-like protein; Provisional

Probab=94.74  E-value=0.94  Score=52.20  Aligned_cols=186  Identities=6%  Similarity=-0.011  Sum_probs=86.4

Q ss_pred             CEEEEEecCC------cEEEEecCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEEccCCceEEE
Q 002564          152 NKVIVGSQEG------SLQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVT  218 (907)
Q Consensus       152 ~~l~~~s~dg------~i~iwd~~~~~~~~~--~~~h~~~I~~l~~sp~~~~la~g~~d-----g~I~iwd~~~~~~~~~  218 (907)
                      ..+++|+.++      .+..||..+.+-...  +.........+  .-++.+.+.|+.+     ..+..||..+++-...
T Consensus       296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            3455565432      577788776654221  11111112222  2356677777765     3577888776653221


Q ss_pred             EeecCCCCEEEEEEecCCCCEEEEEeCC------CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCC--
Q 002564          219 FTHSMRGAVTALAFSSDGQPLLASGASS------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN--  290 (907)
Q Consensus       219 ~~~~~~~~v~~l~fs~dg~~~l~sg~~d------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~--  290 (907)
                      -..+....-.+++ .-++. +.+.|+.+      ..+..||..+++-...-.......-.++ ...++...+.||.++  
T Consensus       374 ~~lp~~r~~~~~~-~~~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~  450 (534)
T PHA03098        374 PPLIFPRYNPCVV-NVNNL-IYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISYID  450 (534)
T ss_pred             CCcCcCCccceEE-EECCE-EEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccCCC
Confidence            1111111111222 23555 67777632      4588999887654332210011111122 233566667776432  


Q ss_pred             ------cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCC-----CCEEEEEceec
Q 002564          291 ------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQD  346 (907)
Q Consensus       291 ------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d-----g~i~iwd~~~~  346 (907)
                            .+.+|  +..+..+..+............+.+  +++.++.||.+     +.+.+||..+.
T Consensus       451 ~~~~~~~v~~y--d~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        451 NIKVYNIVESY--NPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCcccceEEEe--cCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence                  24444  4444444443322211111122222  66677777654     35777776554

>PRK10115 protease 2; Provisional

Probab=94.67  E-value=12  Score=44.17  Aligned_cols=117  Identities=10%  Similarity=0.089  Sum_probs=70.0

Q ss_pred             CCEEEEEEcCCCCEEEEEecC-----CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCC-----CcEEE
Q 002564          182 SSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS-----GVISI  251 (907)
Q Consensus       182 ~~I~~l~~sp~~~~la~g~~d-----g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d-----g~I~i  251 (907)
                      -.+..+.+||++++|+.+...     ..|++.|+.+|+.+......  .. ..++|++|++.++.+...+     ..|..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            346678899999998876432     45889999888644332222  12 5699999998555554422     46888


Q ss_pred             EECCCc--eeeeeeecccccCeE-EEEEecCCCEEEEEcC---CCcEEEEEccCCCC
Q 002564          252 WNLEKR--RLQSVIREAHDNAII-SLHFFANEPVLMSASA---DNSIKMWIFDTTDG  302 (907)
Q Consensus       252 wd~~~~--~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~~---d~~i~vw~~~~~~~  302 (907)
                      +++.++  +....+. ....... ....+.++++++..+.   ++.+.+++.+...+
T Consensus       204 h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~  259 (686)
T PRK10115        204 HTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA  259 (686)
T ss_pred             EECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC
Confidence            898888  3333333 2222233 3333447776554433   45677777544433

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.63  E-value=0.9  Score=47.72  Aligned_cols=157  Identities=15%  Similarity=0.183  Sum_probs=98.0

Q ss_pred             CCeEEEEEcCCCC------CEEEEEEcCCCCEEEEEecCCeEEEEEcc--CCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564          170 TKKKLYEFKGWGS------SISSCVSSPALDVVAVGCSDGKIHVHNVR--YDEELVTFTHSMRGAVTALAFSSDGQPLLA  241 (907)
Q Consensus       170 ~~~~~~~~~~h~~------~I~~l~~sp~~~~la~g~~dg~I~iwd~~--~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~  241 (907)
                      +|..-+.+..|..      .-+.+-|....+.| .+...|.+.=|-.+  +......+.....++|.++.|++|.+ .+|
T Consensus         5 sGalyhelihhPslfcnipesngvFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilA   82 (657)
T KOG2377|consen    5 SGALYHELIHHPSLFCNIPESNGVFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILA   82 (657)
T ss_pred             CcceEEEEecCchhhccCCcccceeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEE
Confidence            4444455544432      12333344333333 33344555555544  23445556655578999999999999 999


Q ss_pred             EEeCCCcEEEEECCCceeeeeee---cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCe
Q 002564          242 SGASSGVISIWNLEKRRLQSVIR---EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL  318 (907)
Q Consensus       242 sg~~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~  318 (907)
                      +--.++.|.+++....+......   ......|.+..|+.+ .-++..+. ..+-+|......   +.++....|...|.
T Consensus        83 VQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~-~G~e~y~v~pek---rslRlVks~~~nvn  157 (657)
T KOG2377|consen   83 VQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITD-QGIEFYQVLPEK---RSLRLVKSHNLNVN  157 (657)
T ss_pred             EEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEec-CCeEEEEEchhh---hhhhhhhhcccCcc
Confidence            99999999999984443322221   133456889999877 44555543 347777666543   44555668889999


Q ss_pred             EEEEecCCCEEEEEe
Q 002564          319 CIRFYANGRHILSAG  333 (907)
Q Consensus       319 ~i~~~~~g~~l~s~~  333 (907)
                      -..|+++.+.++-++
T Consensus       158 Wy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  158 WYMYCPETAVILLST  172 (657)
T ss_pred             EEEEccccceEeeec
Confidence            999999877665443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.59  E-value=0.74  Score=52.12  Aligned_cols=108  Identities=16%  Similarity=0.253  Sum_probs=73.3

Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeec--CcceeEEEEe--eCCCEEEEEeCCCeEEEEEcc-------
Q 002564          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYH--RVNGLLATVADDLVIRLFDVV-------  545 (907)
Q Consensus       477 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~s--~~~~~la~~~~dg~I~v~d~~-------  545 (907)
                      .+-+.-+.-++..++-+....+.|||...+.+...-..  ...|..+.|.  |+++.+.+.+-.+.|.+|--.       
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            34444455555555555556899999998876655444  6899999886  578877777778888888432       


Q ss_pred             --cceeEEEe--ecCC-CCeeeEEECCCCcEEEEEeCCCcEEEEEc
Q 002564          546 --ALRMVRKF--EGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       546 --~~~~~~~~--~~h~-~~I~~l~fspdg~~l~s~s~Dg~I~vwd~  586 (907)
                        +...++++  ..|+ .+|.+..|.++|.+++.+  +..+.|+|-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence              22334433  3455 689999999999766644  345888864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.28  E-value=12  Score=43.96  Aligned_cols=26  Identities=12%  Similarity=0.155  Sum_probs=20.2

Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEE
Q 002564          182 SSISSCVSSPALDVVAVGCSDGKIHV  207 (907)
Q Consensus       182 ~~I~~l~~sp~~~~la~g~~dg~I~i  207 (907)
                      -.|..+.++|+|++||..+..|.+.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~  110 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVL  110 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence            45788889999999998888664443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.26  E-value=9.9  Score=41.35  Aligned_cols=258  Identities=13%  Similarity=0.120  Sum_probs=138.3

Q ss_pred             CCeEEEEEEeCCeEEEEEcCcce----EEEecCCCCcceEEEEEec-----CeEEEEE--cCeEEEEeC----Ce-----
Q 002564           25 GTENFVTVSVGKAFHIYNCAKLN----LVLVGPQLPKKIRALASYR-----DYTFAAY--GNHIAVVKR----AH-----   84 (907)
Q Consensus        25 ~~~~~~~~~~~~~v~iwd~~~~~----~~~~~~~~~~~I~~la~~~-----~~~~~a~--g~~I~vw~~----~~-----   84 (907)
                      +.+.++++|..|.++||+.....    -+..-.....+|-.|+..+     +...+|.  -.++.||..    +.     
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            46799999999999999997543    2333346678898887542     2223333  344777753    11     


Q ss_pred             --eEEEEcccccceEEE--E--ee-----CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCE
Q 002564           85 --QVATWSRHSAKVNLL--L--LF-----GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNK  153 (907)
Q Consensus        85 --~~~~~~~h~~~V~~l--~--~~-----g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  153 (907)
                        .+.....|.-.-++.  .  ++     -++|+.-+.||.+.+++-+....    ...+.. --.....++.+..  +.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----~~~lp~-~llPgPl~Y~~~t--Ds  188 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----SRFLPD-FLLPGPLCYCPRT--DS  188 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE----EEEcCC-CCCCcCeEEeecC--CE
Confidence              122334443332222  2  22     26788889999999999766443    111111 1112234466666  67


Q ss_pred             EEEEecCCcEEEEecCC--------------------Ce---EEEEEcCCCCCEEEEE---EcCCCCEEEEEecCCeEEE
Q 002564          154 VIVGSQEGSLQLWNIST--------------------KK---KLYEFKGWGSSISSCV---SSPALDVVAVGCSDGKIHV  207 (907)
Q Consensus       154 l~~~s~dg~i~iwd~~~--------------------~~---~~~~~~~h~~~I~~l~---~sp~~~~la~g~~dg~I~i  207 (907)
                      +++++.+..+.-|....                    ++   ..+++.- +..+..+.   ++.....+++-++ .++.+
T Consensus       189 fvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLge-r~Lf~  266 (418)
T PF14727_consen  189 FVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGE-RSLFC  266 (418)
T ss_pred             EEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEec-ceEEE
Confidence            88888888888876421                    11   1122222 33343333   3333333444443 45666


Q ss_pred             EEccCCceEEEEeecCCCCEEEEEEec------CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEE---ec
Q 002564          208 HNVRYDEELVTFTHSMRGAVTALAFSS------DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF---FA  278 (907)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~v~~l~fs~------dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~---~~  278 (907)
                      .+. +|......+.. -.+...+.|..      +....+++++.++++.||.=  .+++...+..|. + .++..   ..
T Consensus       267 l~~-~G~l~~~krLd-~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~-P-Val~v~~~~~  340 (418)
T PF14727_consen  267 LKD-NGSLRFQKRLD-YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHV-P-VALSVANFNG  340 (418)
T ss_pred             EcC-CCeEEEEEecC-CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCC-C-EEEEecccCC
Confidence            664 45544444332 22233333332      22224788889999999973  333333331122 2 23332   22


Q ss_pred             CCCEEEEEcCCCcEEEEEc
Q 002564          279 NEPVLMSASADNSIKMWIF  297 (907)
Q Consensus       279 ~~~~l~s~~~d~~i~vw~~  297 (907)
                      -...+++-+.+|.+.+-=+
T Consensus       341 ~~G~IV~Ls~~G~L~v~YL  359 (418)
T PF14727_consen  341 LKGLIVSLSDEGQLSVSYL  359 (418)
T ss_pred             CCceEEEEcCCCcEEEEEe
Confidence            2347888888888887644

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.20  E-value=0.44  Score=55.70  Aligned_cols=188  Identities=14%  Similarity=0.093  Sum_probs=112.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccc--------ccccc-CcCCcEEEEEEcCCCCEEEEE--ecCC
Q 002564          428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS--------ERSNY-AHNGEVVGVACDSTNTLMISA--GYHG  496 (907)
Q Consensus       428 ~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~-~h~~~v~~l~~s~~~~~l~s~--~~dg  496 (907)
                      ..++.++.-..++++...+.+.++-..+-.....-.+..        ..... .....+..+.+.+|+...++.  +.+-
T Consensus        45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~  124 (1405)
T KOG3630|consen   45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE  124 (1405)
T ss_pred             hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence            445666666667777777766666543321111100000        00011 123456667777776554433  3445


Q ss_pred             eEEEEECCCCceee--------e----eecCcceeEEEEeeCC-CEEEEEeCCCeEEEEEccccee-EEEeecCCCCeee
Q 002564          497 DIKVWDFKGRDLKS--------R----WEVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITD  562 (907)
Q Consensus       497 ~i~iwd~~~~~~~~--------~----~~~~~~i~~~~~s~~~-~~la~~~~dg~I~v~d~~~~~~-~~~~~~h~~~I~~  562 (907)
                      .|.+||+.+-..-.        .    +.-..-..++.|.|.- ...++...|+.|+|..+..... +..+. -....++
T Consensus       125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Ta  203 (1405)
T KOG3630|consen  125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTA  203 (1405)
T ss_pred             eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceee
Confidence            78999987542211        1    1111344566777743 3456677888998887654322 22222 4567899


Q ss_pred             EEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeee-----CCceEEEEECCCCceEEEEE
Q 002564          563 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-----DVSITALSLSPNMDVLATAH  617 (907)
Q Consensus       563 l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-----~~~v~~l~~spdg~~lat~~  617 (907)
                      ++|+|.|+.++.|-..|++.-|. ++++....+..     ...|.+++|-....||++-+
T Consensus       204 v~WSprGKQl~iG~nnGt~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  204 VLWSPRGKQLFIGRNNGTEVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             EEeccccceeeEecCCCeEEEee-cccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            99999999999999999998887 34554444432     23599999998888887643

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.56  E-value=5.4  Score=45.16  Aligned_cols=200  Identities=12%  Similarity=0.130  Sum_probs=103.3

Q ss_pred             EeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEE--cCeEEEEeCCeeEEEE--cc---cccceEEEEeeCCE
Q 002564           33 SVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY--GNHIAVVKRAHQVATW--SR---HSAKVNLLLLFGEH  105 (907)
Q Consensus        33 ~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~--g~~I~vw~~~~~~~~~--~~---h~~~V~~l~~~g~~  105 (907)
                      +.--.|+||+....-+-...-.| .++-.|.|+.+..++..  .+.++||+.-.+....  .|   -...|....+.++-
T Consensus        61 ~a~~~I~If~~sG~lL~~~~w~~-~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G  139 (829)
T KOG2280|consen   61 SARPYIRIFNISGQLLGRILWKH-GELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG  139 (829)
T ss_pred             ccceeEEEEeccccchHHHHhcC-CCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc
Confidence            33445777775543322222223 38889999999777655  5568998854332222  11   22334444455555


Q ss_pred             EEEEecCCcEEEEe-cCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEE-e-cCCcEEEEecCCC-eEEEEEcCCC
Q 002564          106 ILSIDIDGNMFIWA-FKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVG-S-QEGSLQLWNISTK-KKLYEFKGWG  181 (907)
Q Consensus       106 l~s~~~dg~v~vWd-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~-s-~dg~i~iwd~~~~-~~~~~~~~h~  181 (907)
                      ++.-..+|.+.+-+ .+......  ...+++......+-.+.++.+...++.. . ..+ ..+.-...+ ...+.+....
T Consensus       140 Vavlt~~g~v~~i~~~~~~~~~~--~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~  216 (829)
T KOG2280|consen  140 VAVLTVSGQVILINGVEEPKLRK--MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPN  216 (829)
T ss_pred             eEEEecCCcEEEEcCCCcchhhh--CCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCC
Confidence            55555566654432 22211110  0111111111011112222211112111 0 111 111221111 1222233324


Q ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCC
Q 002564          182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG  236 (907)
Q Consensus       182 ~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg  236 (907)
                      +.+..+..||+.++||--..+|.|.+-+.+..+....+......+...++|..+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            6788999999999999999999999999998888888875544555577776655

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.51  E-value=19  Score=43.82  Aligned_cols=163  Identities=18%  Similarity=0.311  Sum_probs=90.0

Q ss_pred             cCCcEEEEecCCCeEEEEEcCCCCCEEEEEE--------cCCCCEEEEEecCCeEEEEEccCCceE-------EEEeecC
Q 002564          159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVS--------SPALDVVAVGCSDGKIHVHNVRYDEEL-------VTFTHSM  223 (907)
Q Consensus       159 ~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~--------sp~~~~la~g~~dg~I~iwd~~~~~~~-------~~~~~~~  223 (907)
                      .|+.+.+||++++.....+.+-...|..+..        -|.-+++.+-..--.|.++-+.-++..       ..+....
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            5678999999998888888877777776653        344444444444456666655422211       1111111


Q ss_pred             -CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCC
Q 002564          224 -RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG  302 (907)
Q Consensus       224 -~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~  302 (907)
                       ...|.|+....+|+ ++.+ |.||  .+|.+.       ++ +-.+.-..    ...+.-.+.+.-..+.         
T Consensus       177 dg~~V~~I~~t~nGR-IF~~-G~dg--~lyEl~-------Yq-~~~gWf~~----rc~Kiclt~s~ls~lv---------  231 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGR-IFFA-GRDG--NLYELV-------YQ-AEDGWFGS----RCRKICLTKSVLSSLV---------  231 (1311)
T ss_pred             CCceEEEEEeccCCc-EEEe-ecCC--CEEEEE-------Ee-ccCchhhc----ccccccCchhHHHHhh---------
Confidence             34677777777776 4444 4455  445431       11 11111000    0001111111100000         


Q ss_pred             CcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecc
Q 002564          303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ  347 (907)
Q Consensus       303 ~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~  347 (907)
                       +.++.....+..+|..+.....-..+++-+..|++++|++..+.
T Consensus       232 -Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  232 -PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             -hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence             11122223677899999999888889999999999999998744

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.49  E-value=8.4  Score=39.89  Aligned_cols=159  Identities=17%  Similarity=0.271  Sum_probs=93.7

Q ss_pred             EEEEEEcCCCCEEEEE-ec-----------CCeEEEEECCCCceeeeeecC-------cceeEEEEeeCC-----CEEEE
Q 002564          477 VVGVACDSTNTLMISA-GY-----------HGDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVN-----GLLAT  532 (907)
Q Consensus       477 v~~l~~s~~~~~l~s~-~~-----------dg~i~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~-----~~la~  532 (907)
                      |.++.+++++++-+.= |.           .-.|.+||+.+++.++++..+       +.+..+.+....     .++..
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence            5566666666544321 11           126888999999988887654       456677777632     24444


Q ss_pred             EeC-CCeEEEEEcccceeEEEeecCC-------------------CCeeeEEECC---CCcEEEEEeCCCcEEEEEcCCC
Q 002564          533 VAD-DLVIRLFDVVALRMVRKFEGHT-------------------DRITDFCFSE---DGKWLLSSGMDGSLRIWDVILA  589 (907)
Q Consensus       533 ~~~-dg~I~v~d~~~~~~~~~~~~h~-------------------~~I~~l~fsp---dg~~l~s~s~Dg~I~vwd~~~~  589 (907)
                      +.. .+.|.|+|+.+++..+.+..+.                   +.+..++.+|   +|++|.-....+ -++|.+++.
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~  161 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS  161 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence            433 3589999999988766654322                   2255666655   777777666544 345555432


Q ss_pred             c--------------eeeEeee-CCceEEEEECCCCceEEEEEecCCeEEEeecccccccCCC
Q 002564          590 R--------------QIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN  637 (907)
Q Consensus       590 ~--------------~~~~~~~-~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~~~~  637 (907)
                      -              .+..+-. ......++++++|....+--... .|..|+....|.+...
T Consensus       162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~-aI~~w~~~~~~~~~~~  223 (287)
T PF03022_consen  162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQN-AIGCWDPDGPYTPENF  223 (287)
T ss_dssp             HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCT-EEEEEETTTSB-GCCE
T ss_pred             HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCC-eEEEEeCCCCcCccch
Confidence            1              1122211 13467889999888777766665 7999999887776544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.17  E-value=4.3  Score=38.33  Aligned_cols=176  Identities=14%  Similarity=0.057  Sum_probs=100.1

Q ss_pred             eCCEEEEEecCC--cEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcC
Q 002564          102 FGEHILSIDIDG--NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG  179 (907)
Q Consensus       102 ~g~~l~s~~~dg--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  179 (907)
                      +|..+.+.+.-|  .|++||+.+++.    +.+.+........--+..-+. ......-.+|.-..+|..+.+++..+.-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~----~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQE----IFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSY  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceE----EEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhccccc
Confidence            466666766644  499999998887    444443311111111111120 1223344678888999999888877653


Q ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEee----cCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 002564          180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH----SMRGAVTALAFSSDGQPLLASGASSGVISIWNLE  255 (907)
Q Consensus       180 h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~----~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~  255 (907)
                      . +.=+.+  ..|++.|..+.....+..-|.++-....++..    ..-..+..+.|- ||. +.|---.+..|...+.+
T Consensus       130 ~-GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~p~  204 (262)
T COG3823         130 E-GEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARIDPD  204 (262)
T ss_pred             C-Ccceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEEcCC
Confidence            2 222333  34555677776667787778776554443332    112234445554 455 44444455566667777


Q ss_pred             Cceeeeeee-----------cccccCeEEEEEecCCCEEEEEc
Q 002564          256 KRRLQSVIR-----------EAHDNAIISLHFFANEPVLMSAS  287 (907)
Q Consensus       256 ~~~~~~~~~-----------~~h~~~V~~l~~~~~~~~l~s~~  287 (907)
                      +|+.+..+.           ..|.+-.+.+++.|++..++..+
T Consensus       205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            776665554           23556678899999885444443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.16  E-value=14  Score=39.43  Aligned_cols=200  Identities=15%  Similarity=0.181  Sum_probs=111.4

Q ss_pred             cEEEEcCCCCC-CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEc----CCCCE--EEEEe-cC---CeEEEEE
Q 002564          141 PTCIMHPDTYL-NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS----PALDV--VAVGC-SD---GKIHVHN  209 (907)
Q Consensus       141 ~~~~~~p~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~s----p~~~~--la~g~-~d---g~I~iwd  209 (907)
                      ..+.++|.... .+|+....++-+.+||+ .|+.++.+..  +.++.+..-    -.|+.  ||+++ .+   ..|++|.
T Consensus        57 PAIWvnp~dp~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~  133 (381)
T PF02333_consen   57 PAIWVNPADPAKSLIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR  133 (381)
T ss_dssp             EEEE--SS-GGG-EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred             CcEecCCCCcccceEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence            44556654432 35666667788999998 6777777753  445544432    13332  44444 32   4799998


Q ss_pred             ccCC-ceEEEEeec------CCCCEEEEEEe--c-CCCCEEEEEeCCCcEEEEECC---Cc----eeeeeeecccccCeE
Q 002564          210 VRYD-EELVTFTHS------MRGAVTALAFS--S-DGQPLLASGASSGVISIWNLE---KR----RLQSVIREAHDNAII  272 (907)
Q Consensus       210 ~~~~-~~~~~~~~~------~~~~v~~l~fs--~-dg~~~l~sg~~dg~I~iwd~~---~~----~~~~~~~~~h~~~V~  272 (907)
                      +... ..+..+...      .-..++.+|+-  + +|..++++...+|.+.-|.+.   .+    ++++.+.  -.+.+.
T Consensus       134 id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~E  211 (381)
T PF02333_consen  134 IDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPE  211 (381)
T ss_dssp             EETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EE
T ss_pred             ecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcce
Confidence            8632 233333211      11346777764  3 466577778889988888764   33    4455555  345788


Q ss_pred             EEEEecCCCEEEEEcCCCcEEEEEccCCCCC-cceeEecc--CCCCCCeEEEEec--CC-CEE-EEEeCCCCEEEEEcee
Q 002564          273 SLHFFANEPVLMSASADNSIKMWIFDTTDGD-PRLLRFRS--GHSAPPLCIRFYA--NG-RHI-LSAGQDRAFRLFSVIQ  345 (907)
Q Consensus       273 ~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~-~~~~~~~~--~h~~~v~~i~~~~--~g-~~l-~s~~~dg~i~iwd~~~  345 (907)
                      .|........|..+-.+.-|.-|+.+...+. .+++....  +....+-.++...  ++ .+| +|.-.+++..+|+...
T Consensus       212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            8998888889999988865555555544332 23333332  2456788888764  33 244 4555677899999753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.12  E-value=23  Score=41.99  Aligned_cols=87  Identities=10%  Similarity=0.176  Sum_probs=56.2

Q ss_pred             eeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee---cCCCCeeeEEECCCC------cEEEEEeCCCcE
Q 002564          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDG------KWLLSSGMDGSL  581 (907)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~---~h~~~I~~l~fspdg------~~l~s~s~Dg~I  581 (907)
                      ++..+..+.-+.-.-+...++++..+|.+.-+.......+..+.   .-...|.++++.++.      ++++.++.|+++
T Consensus       533 ew~~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~v  612 (1205)
T KOG1898|consen  533 EWKTPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMV  612 (1205)
T ss_pred             cccCCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccce
Confidence            33444444444444445677777777877766654332233332   224568889998865      689999999999


Q ss_pred             EEEEcCCCceeeEeee
Q 002564          582 RIWDVILARQIDAIHV  597 (907)
Q Consensus       582 ~vwd~~~~~~~~~~~~  597 (907)
                      ++..+....++..+..
T Consensus       613 riisL~p~d~l~~ls~  628 (1205)
T KOG1898|consen  613 RIISLDPSDCLQPLSV  628 (1205)
T ss_pred             eEEEecCcceEEEccc
Confidence            9999987666666543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.04  E-value=13  Score=39.61  Aligned_cols=118  Identities=11%  Similarity=0.072  Sum_probs=71.7

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF  503 (907)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~  503 (907)
                      .++|.++.||+|.+.+++--.+..|.+++....+....+....    +..+..|.+..|+... -++..... -+-+|-.
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c----k~k~~~IlGF~W~~s~-e~A~i~~~-G~e~y~v  139 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC----KTKNANILGFCWTSST-EIAFITDQ-GIEFYQV  139 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh----ccCcceeEEEEEecCe-eEEEEecC-CeEEEEE
Confidence            3789999999999999999999999999986554443332100    1233458899998764 34443332 3445543


Q ss_pred             CCC-ceeeee-ecCcceeEEEEeeCCCEEEEEe--CCCeEEEEEcccc
Q 002564          504 KGR-DLKSRW-EVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVAL  547 (907)
Q Consensus       504 ~~~-~~~~~~-~~~~~i~~~~~s~~~~~la~~~--~dg~I~v~d~~~~  547 (907)
                      ... +.++.. .+...|.-..|.++.+.+..++  ..+++.=+-+.++
T Consensus       140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             chhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            321 112222 3346788888888887544443  3444444444443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.96  E-value=2.2  Score=45.58  Aligned_cols=142  Identities=15%  Similarity=0.187  Sum_probs=91.9

Q ss_pred             CEEE-EEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCC-------EEEEEecCCeEEEEEccC-CceEEEEeec
Q 002564          152 NKVI-VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-------VVAVGCSDGKIHVHNVRY-DEELVTFTHS  222 (907)
Q Consensus       152 ~~l~-~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~-------~la~g~~dg~I~iwd~~~-~~~~~~~~~~  222 (907)
                      +.|+ .|.....++-.|++.|+.+-....|..-  -+.|.|+.+       .-++|-.+..|.-.|.+- |..+......
T Consensus       480 sli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK  557 (776)
T COG5167         480 SLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK  557 (776)
T ss_pred             ceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh
Confidence            3444 4566677888899999999999887665  566777532       234555666666566553 3222222110


Q ss_pred             ---CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 002564          223 ---MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT  299 (907)
Q Consensus       223 ---~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~  299 (907)
                         .+....|..-...|  ++|+|+..|.|++||--.-+....++ +....|..+..+.+|.++++.+. ..+.+-|+..
T Consensus       558 dY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i  633 (776)
T COG5167         558 DYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI  633 (776)
T ss_pred             hccccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence               01223333333344  79999999999999965555555555 88889999999999998887764 4566665543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.93  E-value=12  Score=38.02  Aligned_cols=236  Identities=12%  Similarity=0.137  Sum_probs=127.5

Q ss_pred             CeEEEEEecCCCEEEEEcCCCcEEEEEccCCC--C-CcceeEeccC-----CCCCCeEEEEecCCCE------------E
Q 002564          270 AIISLHFFANEPVLMSASADNSIKMWIFDTTD--G-DPRLLRFRSG-----HSAPPLCIRFYANGRH------------I  329 (907)
Q Consensus       270 ~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~--~-~~~~~~~~~~-----h~~~v~~i~~~~~g~~------------l  329 (907)
                      .-+.|+++|.+.+-++....+...+||.+...  + ...++-....     ....++.+.|+....+            +
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45789999999888888778899999876221  1 1122222221     2346788888754333            5


Q ss_pred             EEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeee
Q 002564          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (907)
Q Consensus       330 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~  409 (907)
                      +.+++||+|.-|...-+.....                                                ..+.+.|-. 
T Consensus       104 if~tEdGTisaW~p~v~~t~~~------------------------------------------------~~~~~~d~s-  134 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMT------------------------------------------------RAEIVVDAS-  134 (336)
T ss_pred             EEEeCCceEEeecCcCCccccc------------------------------------------------ccEEEEccC-
Confidence            6677778887776422111000                                                000000000 


Q ss_pred             ceecceeeecCCCCCCceEEEEEc--CCCCEEEEE-eCCCcEEEEeCCCCccc--eeeecccccccc--------CcCCc
Q 002564          410 FVLGEHILRPCPENPTAVKACTIS--ACGNFAVLG-TAGGWIERFNLQSGISR--GSYLDMSERSNY--------AHNGE  476 (907)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~g-~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~--------~h~~~  476 (907)
                                  ......+.+++-  ..+++|..+ -.+|+|.+||-.-....  ..+.++....-.        +..-.
T Consensus       135 ------------~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~ly  202 (336)
T TIGR03118       135 ------------QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLY  202 (336)
T ss_pred             ------------CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEE
Confidence                        001222334443  335555544 46789999986543321  112211110000        00011


Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC---cceeEEEEee------CCCEEEEEeCCCeEEEEEcccc
Q 002564          477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR------VNGLLATVADDLVIRLFDVVAL  547 (907)
Q Consensus       477 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~------~~~~la~~~~dg~I~v~d~~~~  547 (907)
                      |+-..-+++...=+.+..-|.|-++|.. +++++++...   ...+.++..|      .+.+|+---.||+|..||..++
T Consensus       203 VtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG  281 (336)
T TIGR03118       203 VTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG  281 (336)
T ss_pred             EEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence            1222223333323334445789999965 6677766554   4456677655      4667777778999999999999


Q ss_pred             eeEEEeecCCC------CeeeEEECC
Q 002564          548 RMVRKFEGHTD------RITDFCFSE  567 (907)
Q Consensus       548 ~~~~~~~~h~~------~I~~l~fsp  567 (907)
                      +.+..+....+      ....|+|-.
T Consensus       282 ~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       282 AQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             ceeeeecCCCCCeEEecCeEEeeeCC
Confidence            98888775443      345666654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.84  E-value=4.8  Score=46.29  Aligned_cols=104  Identities=11%  Similarity=0.141  Sum_probs=73.6

Q ss_pred             CEEEEEeCCCcEEEEECCCc--------------------eeeeeeecccccCeEEEEEe--cCCCEEEEEcCCCcEEEE
Q 002564          238 PLLASGASSGVISIWNLEKR--------------------RLQSVIREAHDNAIISLHFF--ANEPVLMSASADNSIKMW  295 (907)
Q Consensus       238 ~~l~sg~~dg~I~iwd~~~~--------------------~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~d~~i~vw  295 (907)
                      .+|+.+..||.|.+|.+++-                    ++...+  .-...+++++++  ...+++|+++....|.||
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            38999999999999965210                    011122  234578999998  788889999888999999


Q ss_pred             EccCCCCCcceeEeccCCCCCCeEEEEecCC---C---EEEEEeCCCCEEEEEce
Q 002564          296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANG---R---HILSAGQDRAFRLFSVI  344 (907)
Q Consensus       296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g---~---~l~s~~~dg~i~iwd~~  344 (907)
                      -+...+....... ...|...|.+|+|.++.   .   .+++++-.|.+.+|++.
T Consensus       193 af~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  193 AFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            8776432222211 22467789999998732   2   77888999999999883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.62  E-value=13  Score=37.72  Aligned_cols=242  Identities=12%  Similarity=0.103  Sum_probs=127.1

Q ss_pred             CEEEEEEecCCCCEEEEEeCCCcEEEEECC------Cc-eeeeeeec--c--cccCeEEEEEecCCC------------E
Q 002564          226 AVTALAFSSDGQPLLASGASSGVISIWNLE------KR-RLQSVIRE--A--HDNAIISLHFFANEP------------V  282 (907)
Q Consensus       226 ~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~------~~-~~~~~~~~--~--h~~~V~~l~~~~~~~------------~  282 (907)
                      .-..|+|+|.+. +-++....+...+||..      .. .++..+..  +  .....+.+.|+....            .
T Consensus        24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            457899999987 66666677899999986      11 23333331  1  234677888774322            3


Q ss_pred             EEEEcCCCcEEEEEccCCCCC--cceeEeccCCCCCC-eEEEEec--CCCEEEEE-eCCCCEEEEEceecccceeechhh
Q 002564          283 LMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPP-LCIRFYA--NGRHILSA-GQDRAFRLFSVIQDQQSRELSQRH  356 (907)
Q Consensus       283 l~s~~~d~~i~vw~~~~~~~~--~~~~~~~~~h~~~v-~~i~~~~--~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~  356 (907)
                      ++.+++||+|.-|.-......  ...+..-.+....| ..+++..  .+.+|+.+ -..++|.+||-.-.+...  . + 
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~--~-g-  178 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL--P-G-  178 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC--C-C-
Confidence            677889999999964322210  11111111212222 3444443  34455444 356778888643221100  0 0 


Q ss_pred             hhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC
Q 002564          357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG  436 (907)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  436 (907)
                                   ...-+.+       ......-++...+   +.                       -.|+-..-.+++
T Consensus       179 -------------~F~DP~i-------PagyAPFnIqnig---~~-----------------------lyVtYA~qd~~~  212 (336)
T TIGR03118       179 -------------SFIDPAL-------PAGYAPFNVQNLG---GT-----------------------LYVTYAQQDADR  212 (336)
T ss_pred             -------------CccCCCC-------CCCCCCcceEEEC---Ce-----------------------EEEEEEecCCcc
Confidence                         0000000       0000000000000   00                       112222223334


Q ss_pred             CEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcC------CCCEEEEEecCCeEEEEECCCCceee
Q 002564          437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS------TNTLMISAGYHGDIKVWDFKGRDLKS  510 (907)
Q Consensus       437 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~------~~~~l~s~~~dg~i~iwd~~~~~~~~  510 (907)
                      +.=+.|..-|.|.+||+.. ..++.+..      .+.-....+|+..|      .+.+|+---.||+|..+|..+++.+.
T Consensus       213 ~d~v~G~G~G~VdvFd~~G-~l~~r~as------~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g  285 (336)
T TIGR03118       213 NDEVAGAGLGYVNVFTLNG-QLLRRVAS------SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLG  285 (336)
T ss_pred             cccccCCCcceEEEEcCCC-cEEEEecc------CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence            4444555667888998764 44444421      24455677888765      45677766689999999999988776


Q ss_pred             eeecC-------cceeEEEEee
Q 002564          511 RWEVG-------CSLVKIVYHR  525 (907)
Q Consensus       511 ~~~~~-------~~i~~~~~s~  525 (907)
                      .+...       ..++.+.|..
T Consensus       286 ~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       286 QLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             eecCCCCCeEEecCeEEeeeCC
Confidence            66543       4566677755

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.43  E-value=0.024  Score=59.54  Aligned_cols=134  Identities=16%  Similarity=0.166  Sum_probs=94.0

Q ss_pred             cEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEEccCCceEEEE
Q 002564          141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG-CSDGKIHVHNVRYDEELVTF  219 (907)
Q Consensus       141 ~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g-~~dg~I~iwd~~~~~~~~~~  219 (907)
                      ....+-|.+  .-+++++.+..+..|| +.++....... .+....++|..+++.+++. -..+.+.+||+.+... .++
T Consensus        38 i~~~w~~e~--~nlavaca~tiv~~YD-~agq~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL  112 (615)
T KOG2247|consen   38 IIHRWRPEG--HNLAVACANTIVIYYD-KAGQVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL  112 (615)
T ss_pred             ceeeEecCC--CceehhhhhhHHHhhh-hhcceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence            344566776  4488888888899998 45555555544 5566778898888876654 4568999999975432 122


Q ss_pred             eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC
Q 002564          220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP  281 (907)
Q Consensus       220 ~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~  281 (907)
                      ..+....-.-+.|++.+. .++.|...|.+.|++..+.+.+...- .|...++++++.+.+.
T Consensus       113 E~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~  172 (615)
T KOG2247|consen  113 ESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDY  172 (615)
T ss_pred             hccCcchHHHHhhccCCc-cccccccccceEEEeccchhhhhhhc-ccccceeEEEecccce
Confidence            211122222378888877 78888899999999988877666553 4999999999988774

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.05  E-value=6.2  Score=44.29  Aligned_cols=78  Identities=9%  Similarity=0.055  Sum_probs=50.0

Q ss_pred             CcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEE
Q 002564          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR  551 (907)
Q Consensus       472 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~  551 (907)
                      .|.+.|.-+..+..+..|+--...-.+.++|+.+.+....+   .-.+-+.|-|.+..++.-+.|+...-|+++-.+.+.
T Consensus       335 nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil---nfcsymqwvp~sdvivaqn~dnl~iwyn~d~peqvt  411 (1636)
T KOG3616|consen  335 NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL---NFCSYMQWVPGSDVIVAQNGDNLCIWYNIDAPEQVT  411 (1636)
T ss_pred             cccccccceeccchhhhhhcccccceeEEEEcccchHHHHH---HHhhhheeccCcceEEecCCCceEEEecCCcchhhe
Confidence            68888888888877766766666677888898876543322   223456788877777766665444344555444443


Q ss_pred             E
Q 002564          552 K  552 (907)
Q Consensus       552 ~  552 (907)
                      .
T Consensus       412 ~  412 (1636)
T KOG3616|consen  412 M  412 (1636)
T ss_pred             e
Confidence            3

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.70  E-value=6.1  Score=37.37  Aligned_cols=161  Identities=12%  Similarity=0.060  Sum_probs=100.8

Q ss_pred             CCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEE-EEecCCeEEEEECCCCceeeeeecCcceeEEEE
Q 002564          445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY  523 (907)
Q Consensus       445 dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~  523 (907)
                      ...|++||+.+|+...+....        ...+.+=-...-+.++. -.-.+|.-..+|..+.+.+..+...+.-+.++.
T Consensus        67 ~S~ir~~~L~~gq~~~s~~l~--------~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~  138 (262)
T COG3823          67 FSKIRVSDLTTGQEIFSEKLA--------PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTS  138 (262)
T ss_pred             cceeEEEeccCceEEEEeecC--------CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeeec
Confidence            348999999999887765421        11222211122233332 334678888999999998888887776666655


Q ss_pred             eeCCCEEEEEeCCCeEEEEEcccceeEEEee----cC-CCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeC
Q 002564          524 HRVNGLLATVADDLVIRLFDVVALRMVRKFE----GH-TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD  598 (907)
Q Consensus       524 s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~----~h-~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~  598 (907)
                        |+.-|..+.....++.-|.++.....+..    |. -..++.+.|- ||...|-.-.+..|..-|..+|+.+..+...
T Consensus       139 --d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS  215 (262)
T COG3823         139 --DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLS  215 (262)
T ss_pred             --CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEcc
Confidence              45557777666788888877665443332    21 1334445554 5666665556666777788888888777531


Q ss_pred             -------------CceEEEEECCCCceEEEE
Q 002564          599 -------------VSITALSLSPNMDVLATA  616 (907)
Q Consensus       599 -------------~~v~~l~~spdg~~lat~  616 (907)
                                   .-...+++.|++..+...
T Consensus       216 ~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT  246 (262)
T COG3823         216 GLLKELNLDKSNDNVLNGIAHDPQQDRFLIT  246 (262)
T ss_pred             CCchhcCccccccccccceeecCcCCeEEEe
Confidence                         126788999887444443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.43  E-value=22  Score=37.77  Aligned_cols=161  Identities=15%  Similarity=0.147  Sum_probs=93.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCc------EEEEeCCCC-ccceeeeccccccccC--------cCCcEEEEEEcCCCCEE
Q 002564          425 TAVKACTISACGNFAVLGTAGGW------IERFNLQSG-ISRGSYLDMSERSNYA--------HNGEVVGVACDSTNTLM  489 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~------i~i~d~~~~-~~~~~~~~~~~~~~~~--------h~~~v~~l~~s~~~~~l  489 (907)
                      +..+.+.+.+++..+++-+.+|.      ++.+++... .............+..        -.....+|++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            67888999966555666666776      666665541 0111110000000001        11145588888888888


Q ss_pred             EEEecC------CeEEEEECCCCceeeeee----------------cCcceeEEEEeeCCCEEEEEeC-----CC--e--
Q 002564          490 ISAGYH------GDIKVWDFKGRDLKSRWE----------------VGCSLVKIVYHRVNGLLATVAD-----DL--V--  538 (907)
Q Consensus       490 ~s~~~d------g~i~iwd~~~~~~~~~~~----------------~~~~i~~~~~s~~~~~la~~~~-----dg--~--  538 (907)
                      ++.-.+      ..|..++.. |+....+.                .......++++|+|+.|.++.+     |+  .  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            877777      778888866 55544331                2356789999999996666543     22  1  


Q ss_pred             -----EEE--EEccc-ceeEE----Eeec-----CCCCeeeEEECCCCcEEEEE-----eCCCcEEEEEc
Q 002564          539 -----IRL--FDVVA-LRMVR----KFEG-----HTDRITDFCFSEDGKWLLSS-----GMDGSLRIWDV  586 (907)
Q Consensus       539 -----I~v--~d~~~-~~~~~----~~~~-----h~~~I~~l~fspdg~~l~s~-----s~Dg~I~vwd~  586 (907)
                           +++  ||..+ ++...    .+..     ....|+.+.+-+++++|+-=     +....++|+.+
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v  248 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV  248 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence                 444  45444 22222    2332     35678999999999987732     13445666644

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.35  E-value=11  Score=36.26  Aligned_cols=103  Identities=17%  Similarity=0.273  Sum_probs=63.1

Q ss_pred             CEEEEEecCCeEEEEEccCC--ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCC---C---cEEEE-ECCC----ceee
Q 002564          194 DVVAVGCSDGKIHVHNVRYD--EELVTFTHSMRGAVTALAFSSDGQPLLASGASS---G---VISIW-NLEK----RRLQ  260 (907)
Q Consensus       194 ~~la~g~~dg~I~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d---g---~I~iw-d~~~----~~~~  260 (907)
                      +.|.++...+.|.+|++...  +.+.+|..  -+.|..+.++..|+ ++++--.+   .   .+++| |++.    ...+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v  105 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV  105 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence            45655566788999999833  44555554  48899999999999 67765322   2   55665 2221    1111


Q ss_pred             e---------------------eeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564          261 S---------------------VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT  300 (907)
Q Consensus       261 ~---------------------~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~  300 (907)
                      .                     .+...-..++.+++..|-..-|+.|+ ++.+.+|.+...
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence            1                     11112234667788887554556665 468999976544

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.31  E-value=0.024  Score=59.56  Aligned_cols=148  Identities=14%  Similarity=0.217  Sum_probs=103.4

Q ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 002564          184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI  263 (907)
Q Consensus       184 I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~  263 (907)
                      -....|.|.+.-+++++.+..+..||-. ++.......  .+....++|..+|...++.+-..+.+.+||+.+......-
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~--tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP--TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC--chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            3445677777779999999999999844 555544443  4677889999988856666778899999999766332222


Q ss_pred             ecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEE
Q 002564          264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL  340 (907)
Q Consensus       264 ~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~i  340 (907)
                      . +-...-.-+.|++..+.++.+...+.+.+++..+.    +.......|...++++++.+.+ +.+.++.|..+.+
T Consensus       114 ~-gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts----R~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v  184 (615)
T KOG2247|consen  114 S-GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS----RRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV  184 (615)
T ss_pred             c-cCcchHHHHhhccCCccccccccccceEEEeccch----hhhhhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence            1 22222223789999999999988999999976544    3333333399999999999876 5666666655443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=91.10  E-value=10  Score=42.02  Aligned_cols=168  Identities=16%  Similarity=0.220  Sum_probs=68.8

Q ss_pred             EEEEEecC--eEEEEEcCeEEEEeCC---------eeEEEE-cccccceEEEEeeCCEEEEEecCCcEEEEecCCCCccc
Q 002564           60 RALASYRD--YTFAAYGNHIAVVKRA---------HQVATW-SRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENL  127 (907)
Q Consensus        60 ~~la~~~~--~~~~a~g~~I~vw~~~---------~~~~~~-~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~  127 (907)
                      ..+.+.+.  .-++++++++++|+-.         .....+ .++...+.++      ++.....|.|+.|+--+.....
T Consensus        29 ~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v------~lv~p~~G~v~f~~~I~~~l~~  102 (422)
T PF08801_consen   29 CSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV------GLVKPKTGRVVFWESISHLLVL  102 (422)
T ss_dssp             -EEEEE-TTSEEEEEETTEEEEEE--SS--GG--EEEEE-----------SE------EEEE-TT-EEEEES-TT-TT--
T ss_pred             eEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE------EEEEcCCCCEEecccchhhhhc
Confidence            34445554  5667889999999852         222233 4444544444      4455668999999865443321


Q ss_pred             cceeeE---------ecCCC-cccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 002564          128 APVGHV---------KLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVA  197 (907)
Q Consensus       128 ~~~~~~---------~~~~~-~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la  197 (907)
                      .....+         ..... .....-..|.+    +++++.+|+|.....+....++.+.-          .+...   
T Consensus       103 ~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~----~I~~ts~GRif~~~~~~~~g~~~l~y----------~~~~~---  165 (422)
T PF08801_consen  103 ATPSQISLLGVSYSELLSGELSTSLTNVEPSG----FIVSTSTGRIFFLGIRDSNGKYELSY----------QQLSG---  165 (422)
T ss_dssp             EEEE------------------EEEEEEETTT----EEEEETT--EEEEEE-TTS-EEEEE-----------TT------
T ss_pred             CccccccccccceeeecCCceEEECCCCceEE----EEEECCCCeEEEEeCCCCCCcEEEEE----------EcCcC---
Confidence            111111         01111 11122244444    67777777777776655333333322          11110   


Q ss_pred             EEecCCeEEEEEccCCceEEE-E--eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 002564          198 VGCSDGKIHVHNVRYDEELVT-F--THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR  257 (907)
Q Consensus       198 ~g~~dg~I~iwd~~~~~~~~~-~--~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~  257 (907)
                            .....+...+..... +  .......|.+++..+..+ ++++...+|.|.+|++..+
T Consensus       166 ------~~~~i~~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  166 ------RCSKINHTSSSIFSSLLPSFSDPRPKIVQVAVDPSRR-LLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             --------------------------------EEEEEEETTTT-EEEEEESSE-EEEEEE-SS
T ss_pred             ------CccccccccCceeccccCCcccchhceeeEEecCCcC-EEEEEeCCCcEEEEEEeCC
Confidence                  000000000000000 0  111123488888888776 9999999999999999753

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PHA02790 Kelch-like protein; Provisional

Probab=91.05  E-value=6.7  Score=44.28  Aligned_cols=131  Identities=10%  Similarity=0.015  Sum_probs=61.7

Q ss_pred             CEEEEEecC--CcEEEEecCCCeEEEEEcCCCCCE-EEEEEcCCCCEEEEEecCC---eEEEEEccCCceEEEEeecCCC
Q 002564          152 NKVIVGSQE--GSLQLWNISTKKKLYEFKGWGSSI-SSCVSSPALDVVAVGCSDG---KIHVHNVRYDEELVTFTHSMRG  225 (907)
Q Consensus       152 ~~l~~~s~d--g~i~iwd~~~~~~~~~~~~h~~~I-~~l~~sp~~~~la~g~~dg---~I~iwd~~~~~~~~~~~~~~~~  225 (907)
                      ...++|+.+  ..+..||..+++=.. +..-..+. ...+..-+|++.++|+.++   .+..||..+++-...-......
T Consensus       320 ~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r  398 (480)
T PHA02790        320 KLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH  398 (480)
T ss_pred             EEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence            445566643  357788876543221 11111111 1122233567777777553   4678888766543221111011


Q ss_pred             CEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCC
Q 002564          226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (907)
Q Consensus       226 ~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d  289 (907)
                       -...+..-+|. +.+.|   |.+.+||.++++-...-...+...-.+++. -++++.+.||.+
T Consensus       399 -~~~~~~~~~~~-IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~  456 (480)
T PHA02790        399 -YKSCALVFGRR-LFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFY  456 (480)
T ss_pred             -ccceEEEECCE-EEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcC
Confidence             11112234565 66666   357889988775443222111111122232 356677777654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.04  E-value=1.1  Score=30.41  Aligned_cols=32  Identities=25%  Similarity=0.542  Sum_probs=26.7

Q ss_pred             CCEEEEEEcCCC---CEEEEEecCCeEEEEEccCC
Q 002564          182 SSISSCVSSPAL---DVVAVGCSDGKIHVHNVRYD  213 (907)
Q Consensus       182 ~~I~~l~~sp~~---~~la~g~~dg~I~iwd~~~~  213 (907)
                      +.|.+|.|||+.   ++|+.+-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   58888888899999999853

It contains a characteristic DLL sequence motif.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.81  E-value=11  Score=33.19  Aligned_cols=121  Identities=17%  Similarity=0.132  Sum_probs=74.6

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcC-----CCCEEEEEecCCeEEEEECCC
Q 002564          431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-----TNTLMISAGYHGDIKVWDFKG  505 (907)
Q Consensus       431 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~  505 (907)
                      .|......|++++..|.|.+++.........-.. .....-.-...|++++..+     ....|+.|+ ...+..||...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~-~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQD-SDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCcccccccccc-CceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence            3444456788889999999998765432221000 0000013456788887654     235566655 47889999998


Q ss_pred             CceeeeeecCcceeEEEEeeC---CCEEEEEeCCCeEEEEEcccceeEEEe
Q 002564          506 RDLKSRWEVGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALRMVRKF  553 (907)
Q Consensus       506 ~~~~~~~~~~~~i~~~~~s~~---~~~la~~~~dg~I~v~d~~~~~~~~~~  553 (907)
                      ...+...+.+..+.++.+-.-   ..-++..+.+..|.-||.+..+...+.
T Consensus        83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            887777677788888877542   234444555667887877665555443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.69  E-value=1.1  Score=44.09  Aligned_cols=63  Identities=21%  Similarity=0.302  Sum_probs=48.2

Q ss_pred             ECCCCcEEEEEeCCCcEEEEEcCCCceeeEe---------------eeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAI---------------HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       565 fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~---------------~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                      +..++.+|++.+.+|.+++||+.+++.+..-               .....|.++.++.+|.-+++-+. + ..|.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g-~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-G-DSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-C-CEEEeccc
Confidence            4557889999999999999999998765332               12234899999999988887765 4 38999853

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA02790 Kelch-like protein; Provisional

Probab=90.67  E-value=11  Score=42.53  Aligned_cols=180  Identities=7%  Similarity=-0.057  Sum_probs=85.0

Q ss_pred             cCCeEEEEEEeC-----CeEEEEEcCcceEEEecCCC-CcceEEEEEecCeEEEEEcC----eEEEEeCCeeEEE----E
Q 002564           24 LGTENFVTVSVG-----KAFHIYNCAKLNLVLVGPQL-PKKIRALASYRDYTFAAYGN----HIAVVKRAHQVAT----W   89 (907)
Q Consensus        24 ~~~~~~~~~~~~-----~~v~iwd~~~~~~~~~~~~~-~~~I~~la~~~~~~~~a~g~----~I~vw~~~~~~~~----~   89 (907)
                      .++..+++|+.+     .++..||..+++-....+-. +..-.+++...+..|++.|.    .+..|+..+..-.    +
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            456667777653     35778999887655544221 22223344445555555542    2777775432111    2


Q ss_pred             cccccceEEEEeeCCEEEEEecCC---cEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEE
Q 002564           90 SRHSAKVNLLLLFGEHILSIDIDG---NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW  166 (907)
Q Consensus        90 ~~h~~~V~~l~~~g~~l~s~~~dg---~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iw  166 (907)
                      ............+|...+.||.++   .+..||..+..-..  ......+..  ..++..-++   +|++.+  |.+.+|
T Consensus       350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~--~~~m~~~r~--~~~~~~~~~---~IYv~G--G~~e~y  420 (480)
T PHA02790        350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF--GPSTYYPHY--KSCALVFGR---RLFLVG--RNAEFY  420 (480)
T ss_pred             CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe--CCCCCCccc--cceEEEECC---EEEEEC--CceEEe
Confidence            111112223334666666666543   47778876654311  111111111  122323333   444433  457788


Q ss_pred             ecCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEEccCCc
Q 002564          167 NISTKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDE  214 (907)
Q Consensus       167 d~~~~~~--~~~~~~h~~~I~~l~~sp~~~~la~g~~d-----g~I~iwd~~~~~  214 (907)
                      |.++++=  +..+.........+  .-++++.++|+.+     ..+..||..+++
T Consensus       421 dp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        421 CESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             cCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            8866532  22222111222222  2356677777654     345666665543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.67  E-value=11  Score=33.11  Aligned_cols=107  Identities=13%  Similarity=0.189  Sum_probs=69.7

Q ss_pred             CEEEEEecCCcEEEEecCCC--------eEEEEEcCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEEccCCceEEE
Q 002564          152 NKVIVGSQEGSLQLWNISTK--------KKLYEFKGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDEELVT  218 (907)
Q Consensus       152 ~~l~~~s~dg~i~iwd~~~~--------~~~~~~~~h~~~I~~l~~sp-----~~~~la~g~~dg~I~iwd~~~~~~~~~  218 (907)
                      ..|++++..|.|.|.+....        ..+..+.- ...|++++-.+     +.+.|++|+. ..+..||+.....+..
T Consensus        11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fy   88 (136)
T PF14781_consen   11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFY   88 (136)
T ss_pred             eeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhh
Confidence            45888888888999986532        23444443 67788886544     3568888876 5799999997766554


Q ss_pred             EeecCCCCEEEEEEecC---CCCEEEEEeCCCcEEEEECCCceeeeee
Q 002564          219 FTHSMRGAVTALAFSSD---GQPLLASGASSGVISIWNLEKRRLQSVI  263 (907)
Q Consensus       219 ~~~~~~~~v~~l~fs~d---g~~~l~sg~~dg~I~iwd~~~~~~~~~~  263 (907)
                      -..  ...|.++.+-.-   ..+++++|+ +..|.-||.+..+...+.
T Consensus        89 ke~--~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   89 KEV--PDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             hhC--ccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence            433  356777777431   223555555 677888886655554443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.66  E-value=21  Score=39.37  Aligned_cols=138  Identities=15%  Similarity=0.149  Sum_probs=0.0

Q ss_pred             EEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC--------cceeEEEEeeCC------CEEEEEe---------
Q 002564          478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVN------GLLATVA---------  534 (907)
Q Consensus       478 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~------~~la~~~---------  534 (907)
                      +.|+|.|++++|++--..|.|++++-.++.........        .....++++|+-      ++|.+..         
T Consensus        33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~  112 (454)
T TIGR03606        33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL  112 (454)
T ss_pred             eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc


Q ss_pred             -CCCeEEEEEcc-----cceeEEEeecCCCC----eeeEEECCCCcEEEEEeCCCc----------E-------------
Q 002564          535 -DDLVIRLFDVV-----ALRMVRKFEGHTDR----ITDFCFSEDGKWLLSSGMDGS----------L-------------  581 (907)
Q Consensus       535 -~dg~I~v~d~~-----~~~~~~~~~~h~~~----I~~l~fspdg~~l~s~s~Dg~----------I-------------  581 (907)
                       ....|.-|.+.     -......+.+-...    -..|.|.|||.+.++.+..+.          .             
T Consensus       113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~  192 (454)
T TIGR03606       113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGK  192 (454)
T ss_pred             cCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcchhcccccccccccc


Q ss_pred             -------EEEEcCCCcee-------------eEeeeCCceEEEEECCCCceEEE
Q 002564          582 -------RIWDVILARQI-------------DAIHVDVSITALSLSPNMDVLAT  615 (907)
Q Consensus       582 -------~vwd~~~~~~~-------------~~~~~~~~v~~l~~spdg~~lat  615 (907)
                             +|+.+...-.+             -.-.++.....++|.|+|++.++
T Consensus       193 d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~  246 (454)
T TIGR03606       193 DYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYAS  246 (454)
T ss_pred             CcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEE

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.56  E-value=27  Score=37.31  Aligned_cols=197  Identities=16%  Similarity=0.227  Sum_probs=110.6

Q ss_pred             ceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEc----CCCCE--EEEEe-CC---CcEEEEeCCC--Ccc
Q 002564          391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS----ACGNF--AVLGT-AG---GWIERFNLQS--GIS  458 (907)
Q Consensus       391 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~--l~~g~-~d---g~i~i~d~~~--~~~  458 (907)
                      .++.+....+-+.+||+....+....       .+.+..+.+-    -.|+.  +++++ .+   ..|++|.+..  +. 
T Consensus        69 SlIigTdK~~GL~VYdL~Gk~lq~~~-------~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-  140 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLDGKELQSLP-------VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-  140 (381)
T ss_dssp             -EEEEEETTTEEEEEETTS-EEEEE--------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-
T ss_pred             ceEEEEeCCCCEEEEcCCCcEEEeec-------CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-
Confidence            35555566678999999877653221       1233333322    13433  34444 32   4688987753  32 


Q ss_pred             ceeeeccccccccCcCCcEEEEEE--cC-CCC-EEEEEecCCeEEEEECC---CC----ceeeeeecCcceeEEEEeeCC
Q 002564          459 RGSYLDMSERSNYAHNGEVVGVAC--DS-TNT-LMISAGYHGDIKVWDFK---GR----DLKSRWEVGCSLVKIVYHRVN  527 (907)
Q Consensus       459 ~~~~~~~~~~~~~~h~~~v~~l~~--s~-~~~-~l~s~~~dg~i~iwd~~---~~----~~~~~~~~~~~i~~~~~s~~~  527 (907)
                      +..+....... ......+.++|+  ++ +|. +.+..+.+|.+..|.+.   .+    ++++.+...+.+..|......
T Consensus       141 L~~v~~~~~p~-~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~  219 (381)
T PF02333_consen  141 LTDVTDPAAPI-ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDET  219 (381)
T ss_dssp             EEE-CBTTC-E-E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTT
T ss_pred             ceEcCCCCccc-ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEeccc
Confidence            22221100000 011234677776  33 454 56667789999888774   22    467888888999999999999


Q ss_pred             CEEEEEeCCCeEEEEEccc-----ceeEEEeec--CCCCeeeEEEC--CCC-cEEE-EEeCCCcEEEEEcCC-CceeeEe
Q 002564          528 GLLATVADDLVIRLFDVVA-----LRMVRKFEG--HTDRITDFCFS--EDG-KWLL-SSGMDGSLRIWDVIL-ARQIDAI  595 (907)
Q Consensus       528 ~~la~~~~dg~I~v~d~~~-----~~~~~~~~~--h~~~I~~l~fs--pdg-~~l~-s~s~Dg~I~vwd~~~-~~~~~~~  595 (907)
                      ..|.++-++.-|+-|+.+.     ++.+....+  ....|-.|++-  +++ .||+ |.-.+++..||+... ...+..|
T Consensus       220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF  299 (381)
T ss_dssp             TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred             CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence            9999999999998888762     233433333  34567777764  344 3555 444678899999874 3445555


Q ss_pred             e
Q 002564          596 H  596 (907)
Q Consensus       596 ~  596 (907)
                      +
T Consensus       300 ~  300 (381)
T PF02333_consen  300 R  300 (381)
T ss_dssp             E
T ss_pred             E
Confidence            4

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.52  E-value=9.8  Score=41.00  Aligned_cols=147  Identities=15%  Similarity=0.206  Sum_probs=93.5

Q ss_pred             CCCCEEE-EEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCC-------EEEEEeCCCeEEEEEccc-ceeEEEee
Q 002564          484 STNTLMI-SAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-------LLATVADDLVIRLFDVVA-LRMVRKFE  554 (907)
Q Consensus       484 ~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-------~la~~~~dg~I~v~d~~~-~~~~~~~~  554 (907)
                      .+..++. .++....++-.|+..|+.+..+..+..+ -+.|.|..+       .-++|-.+..|.-.|.+- |..+....
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            3444444 4455667888899999999999988777 677877543       223454555555555432 21121111


Q ss_pred             cCCCCeeeEEECC----CCcEEEEEeCCCcEEEEEcCCCceeeEee-eCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          555 GHTDRITDFCFSE----DGKWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       555 ~h~~~I~~l~fsp----dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                       ....++.-.||.    .+.|+|.||..|-||+||--.-+....+. ....|..+..+.+|+++.+.+..  .+-+-+++
T Consensus       556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~--yllL~d~~  632 (776)
T COG5167         556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN--YLLLTDVP  632 (776)
T ss_pred             -ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc--eEEEEecc
Confidence             122233333333    33599999999999999965433333333 24458899999999999888876  58888887


Q ss_pred             ccccc
Q 002564          630 CMFSG  634 (907)
Q Consensus       630 ~~~~~  634 (907)
                      -.+..
T Consensus       633 ik~g~  637 (776)
T COG5167         633 IKYGQ  637 (776)
T ss_pred             cccCC
Confidence            66653

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.44  E-value=6  Score=46.43  Aligned_cols=27  Identities=15%  Similarity=0.169  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEE
Q 002564          424 PTAVKACTISACGNFAVLGTAGGWIER  450 (907)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i  450 (907)
                      ...|..+.++++|.+++..+..|...+
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~  110 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVL  110 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence            367999999999999999888774444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.39  E-value=20  Score=35.63  Aligned_cols=234  Identities=12%  Similarity=0.062  Sum_probs=141.1

Q ss_pred             CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceee
Q 002564          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ  260 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~  260 (907)
                      ...-..++-.|||.+-.++...|.|--.|..+|+....-... ......+..-|||. .-++-+. .-|.-.|-++....
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~-Ga~Phgiv~gpdg~-~Witd~~-~aI~R~dpkt~evt  137 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGS-GASPHGIVVGPDGS-AWITDTG-LAIGRLDPKTLEVT  137 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCC-CCCCceEEECCCCC-eeEecCc-ceeEEecCcccceE
Confidence            445567888999999999888888888898888865544333 56678888889988 3333222 25555665554332


Q ss_pred             e-eeec-ccccCeEEEEEecCCCEEEEEcCC---------CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEE
Q 002564          261 S-VIRE-AHDNAIISLHFFANEPVLMSASAD---------NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI  329 (907)
Q Consensus       261 ~-~~~~-~h~~~V~~l~~~~~~~~l~s~~~d---------~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l  329 (907)
                      . .+.. .-........|.+.|++-+++...         +.|++|..              ........|+..|||..-
T Consensus       138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa--------------PqG~gpyGi~atpdGsvw  203 (353)
T COG4257         138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA--------------PQGGGPYGICATPDGSVW  203 (353)
T ss_pred             EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc--------------CCCCCCcceEECCCCcEE
Confidence            1 1111 234567888899999887777531         23444422              123456778888888877


Q ss_pred             EEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeee
Q 002564          330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (907)
Q Consensus       330 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~  409 (907)
                      ++.-.+..|...|..... ...+                                                         
T Consensus       204 yaslagnaiaridp~~~~-aev~---------------------------------------------------------  225 (353)
T COG4257         204 YASLAGNAIARIDPFAGH-AEVV---------------------------------------------------------  225 (353)
T ss_pred             EEeccccceEEcccccCC-ccee---------------------------------------------------------
Confidence            776667667666654431 1111                                                         


Q ss_pred             ceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEE
Q 002564          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  489 (907)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  489 (907)
                              ..........+.+-.+|.|..-++-...|.+..||.+... -.++..      .+....-.++.++..++.-
T Consensus       226 --------p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypL------Pgs~arpys~rVD~~grVW  290 (353)
T COG4257         226 --------PQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPL------PGSKARPYSMRVDRHGRVW  290 (353)
T ss_pred             --------cCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeC------CCCCCCcceeeeccCCcEE
Confidence                    1111112334455566777777777778889999887655 333321      2444455666777666554


Q ss_pred             EEEecCCeEEEEECC
Q 002564          490 ISAGYHGDIKVWDFK  504 (907)
Q Consensus       490 ~s~~~dg~i~iwd~~  504 (907)
                      .+--..|.|.-+|-.
T Consensus       291 ~sea~agai~rfdpe  305 (353)
T COG4257         291 LSEADAGAIGRFDPE  305 (353)
T ss_pred             eeccccCceeecCcc
Confidence            444444555555543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.08  E-value=19  Score=34.76  Aligned_cols=104  Identities=13%  Similarity=0.148  Sum_probs=66.4

Q ss_pred             EEEEEecCCcEEEEecC--CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---C---eEEEE-EccC----CceE---
Q 002564          153 KVIVGSQEGSLQLWNIS--TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---G---KIHVH-NVRY----DEEL---  216 (907)
Q Consensus       153 ~l~~~s~dg~i~iwd~~--~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g---~I~iw-d~~~----~~~~---  216 (907)
                      .|+++...+.|.+|++.  ..+.+.+|.. -+.|..+.++..|++|++--.+   .   .+|+| |++.    ...+   
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            46565677889999987  4567788887 4889999999999999986443   2   56665 2221    1111   


Q ss_pred             ------------------EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564          217 ------------------VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (907)
Q Consensus       217 ------------------~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~  259 (907)
                                        ..+..+-..++.+++-.|-... |++|+ ++.+.+|.+.....
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~  167 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTI  167 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEE
Confidence                              1111222346677777775442 44555 56899998765433

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.59  E-value=0.45  Score=54.15  Aligned_cols=151  Identities=19%  Similarity=0.304  Sum_probs=86.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEE-----------EcCCCCEEEEEecC
Q 002564          427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA-----------CDSTNTLMISAGYH  495 (907)
Q Consensus       427 v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-----------~s~~~~~l~s~~~d  495 (907)
                      |.-+-+-++..++.++..+|.|++.+...... ..+        .+|...++.++           ++|||+.++.+..|
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~--------rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d  256 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLF--------RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD  256 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHH-HHH--------HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC
Confidence            33334445667888889999999988765433 222        25666555543           68999999999999


Q ss_pred             CeEEEEECC-CC----ceeeeeecCc--ceeEEEEeeCCC---------EEEEEe-CCCeEEEEEcccceeEEE------
Q 002564          496 GDIKVWDFK-GR----DLKSRWEVGC--SLVKIVYHRVNG---------LLATVA-DDLVIRLFDVVALRMVRK------  552 (907)
Q Consensus       496 g~i~iwd~~-~~----~~~~~~~~~~--~i~~~~~s~~~~---------~la~~~-~dg~I~v~d~~~~~~~~~------  552 (907)
                      |.+++|-+. ++    .+...++.+.  +-.|..++.+..         ++++++ .+..+++|....++|+-.      
T Consensus       257 G~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v  336 (1283)
T KOG1916|consen  257 GSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGV  336 (1283)
T ss_pred             CccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccce
Confidence            999999754 22    3444444443  333333333211         334443 356789998887777511      


Q ss_pred             --eecCCCCeeeEEECCC-CcEEEEEeCCCcEEEEEc
Q 002564          553 --FEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       553 --~~~h~~~I~~l~fspd-g~~l~s~s~Dg~I~vwd~  586 (907)
                        ...|.+.|+.+....- -..+++-+-|++|.+|-=
T Consensus       337 ~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn  373 (1283)
T KOG1916|consen  337 QIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN  373 (1283)
T ss_pred             EeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence              1123333332211100 011344567888999853

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=89.39  E-value=46  Score=38.25  Aligned_cols=151  Identities=17%  Similarity=0.250  Sum_probs=83.8

Q ss_pred             cCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceee--eeecCcceeEE---EEee------CCCEEEEEeC-C---C
Q 002564          473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEVGCSLVKI---VYHR------VNGLLATVAD-D---L  537 (907)
Q Consensus       473 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~i~~~---~~s~------~~~~la~~~~-d---g  537 (907)
                      -...|.++.+.++++.+++.-.+|.|.+||+..+....  .......+ .+   +|-+      ...++.+.+. +   -
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~-~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~  206 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSI-NVSYSKFVNDFELENGKDLLLTVSQLSNSKL  206 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccccc-ceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence            35779999999999999999999999999994332222  12111111 11   1211      1234444443 2   2


Q ss_pred             eEEEEEc-ccceeEEEee---cCCCCeeeEEECC-CCcEEEEEeCCCcEEEEEcCCCceeeEeeeCC-------ceEEEE
Q 002564          538 VIRLFDV-VALRMVRKFE---GHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SITALS  605 (907)
Q Consensus       538 ~I~v~d~-~~~~~~~~~~---~h~~~I~~l~fsp-dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-------~v~~l~  605 (907)
                      ..+++.+ .....+..+.   -+.....+..|.- +|+...-  .+++|.+|++++-+...++..+.       .+.++.
T Consensus       207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~  284 (670)
T PF10395_consen  207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK  284 (670)
T ss_pred             EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence            5677777 1122222222   1222223333332 5654433  67899999999988887776652       233333


Q ss_pred             ECCCCceEEEEEecCCeEEEeecc
Q 002564          606 LSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       606 ~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                      - |..+++.-+..+  .|++.|..
T Consensus       285 ~-~s~nRvLLs~~n--kIyLld~~  305 (670)
T PF10395_consen  285 P-PSPNRVLLSVNN--KIYLLDLK  305 (670)
T ss_pred             c-CCCCeEEEEcCC--EEEEEeeh
Confidence            2 333444444444  49999873

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.35  E-value=1.5  Score=29.69  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=27.1

Q ss_pred             CCEEEEEEecCCC--CEEEEEeCCCcEEEEECCCc
Q 002564          225 GAVTALAFSSDGQ--PLLASGASSGVISIWNLEKR  257 (907)
Q Consensus       225 ~~v~~l~fs~dg~--~~l~sg~~dg~I~iwd~~~~  257 (907)
                      +.|.++.|+|+..  .+|+.+-..|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4689999997543  58888888899999999853

It contains a characteristic DLL sequence motif.

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=89.11  E-value=22  Score=35.48  Aligned_cols=136  Identities=13%  Similarity=0.188  Sum_probs=87.5

Q ss_pred             CCeEEEEEEe-----CCeEEEEEcCcceEEEecCCCCcceEEEEEecC-----eEEEEEcCeEEEEeCCeeEEEEc----
Q 002564           25 GTENFVTVSV-----GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRD-----YTFAAYGNHIAVVKRAHQVATWS----   90 (907)
Q Consensus        25 ~~~~~~~~~~-----~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~-----~~~~a~g~~I~vw~~~~~~~~~~----   90 (907)
                      +...|+++..     +..++||.-.+.......+..|..|.++-....     ..-+|+|..|++|+.-++...+.    
T Consensus        29 Gd~kLvvaD~g~~~~~~kLKVykGt~l~~E~~L~d~P~ai~sFy~d~~ep~~P~iAVA~G~~vyiYkNlkP~yKftlP~~  108 (257)
T PF14779_consen   29 GDYKLVVADLGTGDQNMKLKVYKGTSLISEITLPDLPSAIVSFYMDEHEPRTPAIAVAAGPSVYIYKNLKPFYKFTLPPL  108 (257)
T ss_pred             CeEEEEEEecCCcCCCceEEEEcCCChhhcccccCCCeEEEEEeccCCCCCCCeEEEEeCCEEEEEecccceeeecCCCC
Confidence            4556777774     468999988776666666666666666654431     56678899999986433221110    


Q ss_pred             -----------------------------------------------------------------ccccceEEEEe----
Q 002564           91 -----------------------------------------------------------------RHSAKVNLLLL----  101 (907)
Q Consensus        91 -----------------------------------------------------------------~h~~~V~~l~~----  101 (907)
                                                                                       .+...|+|++.    
T Consensus       109 ~~~~~E~eiW~~~~~~~i~~~~l~~~L~~lr~~~~~~LS~rSl~~L~l~~ee~~~fi~~~k~~pl~~~t~ITcm~tikk~  188 (257)
T PF14779_consen  109 EINPLEQEIWQQLREGKIDPETLKEMLESLRDIAGVKLSPRSLRFLQLDPEEREAFIERYKDSPLKRQTVITCMATIKKS  188 (257)
T ss_pred             CCCHHHHHHHHhcccCCCCHHHHHHHHHHHhhccCCccCHHHHHHHCCCHHHHHHHHHHHhcCCcccCceeEEeeeeccc
Confidence                                                                             13456888873    


Q ss_pred             --e---CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEE---EcCCCCCCEEEEEecCCcEEEE
Q 002564          102 --F---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI---MHPDTYLNKVIVGSQEGSLQLW  166 (907)
Q Consensus       102 --~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~l~~~s~dg~i~iw  166 (907)
                        +   -..|+.|.++|.|.|.|-.....    +.++..+.-.+..++   +..-.  -+|++++.||.|++.
T Consensus       189 ~~d~~a~scLViGTE~~~i~iLd~~af~i----l~~~~lpsvPv~i~~~G~~devd--yRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  189 SADEDAVSCLVIGTESGEIYILDPQAFTI----LKQVQLPSVPVFISVSGQYDEVD--YRIVVACRDGKIYTI  255 (257)
T ss_pred             ccCCCCcceEEEEecCCeEEEECchhhee----EEEEecCCCceEEEEEeeeeccc--eEEEEEeCCCEEEEE
Confidence              1   35799999999999999887766    566665544332222   21122  378888899988764

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.09  E-value=2.3  Score=44.74  Aligned_cols=163  Identities=14%  Similarity=0.065  Sum_probs=99.9

Q ss_pred             CcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeee-e-ec--C---ccee-EEEEeeCCCEEEEEeCCCeEEEE-
Q 002564          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-W-EV--G---CSLV-KIVYHRVNGLLATVADDLVIRLF-  542 (907)
Q Consensus       472 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-~~--~---~~i~-~~~~s~~~~~la~~~~dg~I~v~-  542 (907)
                      .....|..+-..|||+.+..-+. ..+.++++.+...... + +.  +   ..++ ++..-..|.-+.+++.||.|.-| 
T Consensus       218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            44567788889999998887765 7888998876543222 1 11  1   1121 11222345667788888888766 


Q ss_pred             Ecccc-----eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEE
Q 002564          543 DVVAL-----RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH  617 (907)
Q Consensus       543 d~~~~-----~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~  617 (907)
                      |+..+     ..++.++-...++..+.--.+.+-+++-+..|++.++.....+.+-.-+....+.-+++||.+.+|++-.
T Consensus       297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~  376 (733)
T COG4590         297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED  376 (733)
T ss_pred             eeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec
Confidence            54432     1223332222334333322234556777788888888766665554444445677899999999999865


Q ss_pred             ecCCeEEEeecccccccCCC
Q 002564          618 VDQNGVYLWVNRCMFSGDSN  637 (907)
Q Consensus       618 ~d~~~i~lW~~~~~~~~~~~  637 (907)
                      ..  .|+++.+...+-.++.
T Consensus       377 ~g--ki~~~~l~Nr~Peisw  394 (733)
T COG4590         377 QG--KIRLAQLENRNPEISW  394 (733)
T ss_pred             CC--ceEEEEecCCCCCccH
Confidence            54  4999887666555443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.92  E-value=9.8  Score=41.19  Aligned_cols=29  Identities=17%  Similarity=0.027  Sum_probs=23.9

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 002564          424 PTAVKACTISACGNFAVLGTAGGWIERFN  452 (907)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d  452 (907)
                      .-.|..+.+++.|..++..+.+|.+.++=
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence            35678889999999999999999776654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=88.86  E-value=27  Score=34.84  Aligned_cols=243  Identities=12%  Similarity=0.048  Sum_probs=143.4

Q ss_pred             CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD  303 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  303 (907)
                      ......++-.|||. +-.++...|.|--.|..+|+....-. +....-..+..-|||..-++-+..   -|-.++..+..
T Consensus        61 G~ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Witd~~~---aI~R~dpkt~e  135 (353)
T COG4257          61 GSAPFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETYPL-GSGASPHGIVVGPDGSAWITDTGL---AIGRLDPKTLE  135 (353)
T ss_pred             CCCccccccCCCCc-eEEecCccccceecCCCCCceEEEec-CCCCCCceEEECCCCCeeEecCcc---eeEEecCcccc
Confidence            35667788889998 77888888888888988887765544 666666778888888765554332   23333433322


Q ss_pred             cceeEe-ccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeec
Q 002564          304 PRLLRF-RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA  382 (907)
Q Consensus       304 ~~~~~~-~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  382 (907)
                      ...... ...-........|.+.|+.-+++.. |.---.|.                                       
T Consensus       136 vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdP---------------------------------------  175 (353)
T COG4257         136 VTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDP---------------------------------------  175 (353)
T ss_pred             eEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCc---------------------------------------
Confidence            111111 1222345677788888877776642 11000000                                       


Q ss_pred             ccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564          383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY  462 (907)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~  462 (907)
                                     ..+.+++|+...              ......++..|+|..-++...+..|-..|..++.. ..+
T Consensus       176 ---------------a~~~i~vfpaPq--------------G~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~  225 (353)
T COG4257         176 ---------------ARNVISVFPAPQ--------------GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVV  225 (353)
T ss_pred             ---------------ccCceeeeccCC--------------CCCCcceEECCCCcEEEEeccccceEEcccccCCc-cee
Confidence                           112333343321              14567788999999988888888888888877732 222


Q ss_pred             eccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC---cceeEEEEeeCCCEEEEEeCCCeE
Q 002564          463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVI  539 (907)
Q Consensus       463 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~dg~I  539 (907)
                      ..     ..+....-..+-.+|.++.-+|....+.+..+|-.... -.++...   ..-.++.....++.-.+--..|.|
T Consensus       226 p~-----P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai  299 (353)
T COG4257         226 PQ-----PNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAI  299 (353)
T ss_pred             cC-----CCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCce
Confidence            21     01223445667778888888887777888888765543 2333322   334455555555544444445566


Q ss_pred             EEEEcccc
Q 002564          540 RLFDVVAL  547 (907)
Q Consensus       540 ~v~d~~~~  547 (907)
                      .-+|-++.
T Consensus       300 ~rfdpeta  307 (353)
T COG4257         300 GRFDPETA  307 (353)
T ss_pred             eecCcccc
Confidence            66665543

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=88.61  E-value=50  Score=37.66  Aligned_cols=392  Identities=15%  Similarity=0.134  Sum_probs=170.7

Q ss_pred             EEEEEecCCcEEEE--ecCCCeEEE-------EEcC----CCCCEEEEEEcCCCCEEEEEecCCeEEEEEccC----C-c
Q 002564          153 KVIVGSQEGSLQLW--NISTKKKLY-------EFKG----WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY----D-E  214 (907)
Q Consensus       153 ~l~~~s~dg~i~iw--d~~~~~~~~-------~~~~----h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~----~-~  214 (907)
                      .|++++.+|.+.+.  +..+.+...       .+..    ....-..++..|.++.++++..+|.+.|+-+..    + .
T Consensus         2 ~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~   81 (504)
T PF10433_consen    2 SLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEPLSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIA   81 (504)
T ss_dssp             EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE---SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-T
T ss_pred             EEEEEECCCCEEEEEEECCCCccceeeEEEeEecCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEeccccccccc
Confidence            46777777776654  433333321       1111    123456789999999999999999999999887    1 1


Q ss_pred             eEEEEee--cCCCCEEEEEEec---C-CCCEEEEE--eCC--CcEEEEE--CCCceee------ee--eecccccCeEEE
Q 002564          215 ELVTFTH--SMRGAVTALAFSS---D-GQPLLASG--ASS--GVISIWN--LEKRRLQ------SV--IREAHDNAIISL  274 (907)
Q Consensus       215 ~~~~~~~--~~~~~v~~l~fs~---d-g~~~l~sg--~~d--g~I~iwd--~~~~~~~------~~--~~~~h~~~V~~l  274 (907)
                      ....+..  ...+.|..++|-.   . ..+.++.-  ...  ..+..++  ...+...      ..  +...+..+ .-+
T Consensus        82 ~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p-~~L  160 (504)
T PF10433_consen   82 FSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELP-SFL  160 (504)
T ss_dssp             T---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TT-EEE
T ss_pred             ccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCc-cEE
Confidence            1111111  1156789999985   1 22244432  222  2234443  3332110      00  11111222 223


Q ss_pred             EEecC--CCEEEEEcCCCcEEEEEccCCCCCcceeEecc--C-CCCCCeEEE-------EecCCCEEEEEeCCCCEEEEE
Q 002564          275 HFFAN--EPVLMSASADNSIKMWIFDTTDGDPRLLRFRS--G-HSAPPLCIR-------FYANGRHILSAGQDRAFRLFS  342 (907)
Q Consensus       275 ~~~~~--~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--~-h~~~v~~i~-------~~~~g~~l~s~~~dg~i~iwd  342 (907)
                      .-.|.  +-.+++ + ++.+.+-+.....+.........  . ...-+.+..       ...++..++.+..+|.+....
T Consensus       161 IPlp~~~ggllV~-~-~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~  238 (504)
T PF10433_consen  161 IPLPNPPGGLLVG-G-ENIIIYKNHLIGSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLT  238 (504)
T ss_dssp             EEE-TTT-SEEEE-E-SSEEEEEE------TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEE-C-CEEEEEecccccccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEE
Confidence            33333  334433 3 23333322222111111111110  1 112222222       234677899999999998887


Q ss_pred             ceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCC
Q 002564          343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE  422 (907)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~  422 (907)
                      +.....  .+.                                                  +-.+.+            .
T Consensus       239 l~~~~~--~i~--------------------------------------------------i~~~g~------------~  254 (504)
T PF10433_consen  239 LDNDGG--SIS--------------------------------------------------ITYLGT------------L  254 (504)
T ss_dssp             EEEEEE--EEE--------------------------------------------------EEEEEE-------------
T ss_pred             EEECCC--eEE--------------------------------------------------EEEcCC------------c
Confidence            765432  000                                                  000000            0


Q ss_pred             CCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCC--CCccceeeeccccccccCcCCcEEEEEEcCC----CC------EE
Q 002564          423 NPTAVKACTISACG-NFAVLGTAGGWIERFNLQ--SGISRGSYLDMSERSNYAHNGEVVGVACDST----NT------LM  489 (907)
Q Consensus       423 ~~~~v~~~~~s~~g-~~l~~g~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~------~l  489 (907)
                       ....+++++..+| .++++|+..|.=.++.+.  .-.....+         ..-++|..+++.+.    ..      .+
T Consensus       255 -~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~---------~N~~Pi~D~~v~~~~~~~~~~~~~~~~l  324 (504)
T PF10433_consen  255 -CSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL---------PNWGPIVDFCVVDSSNSGQPSNPSSDQL  324 (504)
T ss_dssp             --S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-------------SEEEEEEE-TSSSSS-------EE
T ss_pred             -CChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec---------cCcCCccceEEeccccCCCCcccccceE
Confidence             1334455555544 578888876654444443  22333333         34578888888431    11      45


Q ss_pred             EEEe---cCCeEEEEECCCCc---eeeeeecCcceeEEEEeeC----CCEEEEEeCCCeEEEEEcc---cceeEEEee--
Q 002564          490 ISAG---YHGDIKVWDFKGRD---LKSRWEVGCSLVKIVYHRV----NGLLATVADDLVIRLFDVV---ALRMVRKFE--  554 (907)
Q Consensus       490 ~s~~---~dg~i~iwd~~~~~---~~~~~~~~~~i~~~~~s~~----~~~la~~~~dg~I~v~d~~---~~~~~~~~~--  554 (907)
                      ++++   .+|.+++..-.-+-   ........+ +..+-.-+.    ..+++.+..+ .-+++.+.   ..+.+....  
T Consensus       325 v~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~  402 (504)
T PF10433_consen  325 VACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEED  402 (504)
T ss_dssp             EEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE---
T ss_pred             EEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhc
Confidence            5554   57788887532111   222222222 333332222    4566666554 44566553   233332221  


Q ss_pred             cC---CCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCC--ceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564          555 GH---TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV--SITALSLSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       555 ~h---~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~--~v~~l~~spdg~~lat~~~d~~~i~lW~~~  629 (907)
                      +-   ...+.+-.+.  +..++=.... .|++.+...++.......+.  .|.+.+..  +.+++.+-.++ .+..+.+.
T Consensus       403 ~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~-~~~~~~~~  476 (504)
T PF10433_consen  403 GFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAASIN--DPQVLVALSGG-ELVYFELD  476 (504)
T ss_dssp             TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEEES--SSEEEEEE-TT-EEEEEEEE
T ss_pred             cCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEEEC--CCEEEEEEeCC-cEEEEEEE
Confidence            11   1122222222  3344444433 48888888888777665443  36666664  35566655566 47777654

...

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.60  E-value=30  Score=39.64  Aligned_cols=92  Identities=11%  Similarity=0.124  Sum_probs=50.6

Q ss_pred             CcEEEEEEcCCCCEEEEEecCCe-----EEEEECC---CCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEccc
Q 002564          475 GEVVGVACDSTNTLMISAGYHGD-----IKVWDFK---GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA  546 (907)
Q Consensus       475 ~~v~~l~~s~~~~~l~s~~~dg~-----i~iwd~~---~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~  546 (907)
                      +.-..+.|-|.|..+++-+.||.     |.++.-+   .|+.-............+|.-....+|++. .+.+.+|-..+
T Consensus       247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkN  325 (1243)
T COG5290         247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKN  325 (1243)
T ss_pred             cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccc
Confidence            33445789999999999886653     5565533   222222223334455666666555555543 46788997665


Q ss_pred             ceeEEEeecCCCCeeeEEECC
Q 002564          547 LRMVRKFEGHTDRITDFCFSE  567 (907)
Q Consensus       547 ~~~~~~~~~h~~~I~~l~fsp  567 (907)
                      ..-.-+..-.-..+.-+.|+|
T Consensus       326 yhWYLK~e~~ip~~s~vkwhp  346 (1243)
T COG5290         326 YHWYLKVERQIPGISYVKWHP  346 (1243)
T ss_pred             eEEEEEEeecCCCcceeeecc
Confidence            432212111223344556666

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.46  E-value=12  Score=39.80  Aligned_cols=238  Identities=15%  Similarity=0.183  Sum_probs=117.4

Q ss_pred             EEeeCCEEEEEecCCcEEEEecCCCCcc-ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe----E
Q 002564           99 LLLFGEHILSIDIDGNMFIWAFKGIEEN-LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK----K  173 (907)
Q Consensus        99 l~~~g~~l~s~~~dg~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~----~  173 (907)
                      +...|+.-+--+.||.=..|.+.+.... ..++++.......+ .-+-.|.+. ..++.|..+|.+.+....-..    +
T Consensus        76 m~~~G~~a~l~~N~g~Gvf~~l~~~~aPAgs~I~~qal~~ppv-~wa~~~~gq-p~~alglsngqv~v~qp~~s~t~p~p  153 (733)
T COG4590          76 MGAYGENAFLMSNDGVGVFWSLRSVSAPAGSPIQTQALGFPPV-LWAQTPPGQ-PWFALGLSNGQVAVVQPQLSHTMPTP  153 (733)
T ss_pred             cccccceeEEEecCCccEEEEecccCCCCCCchhhhhcCCCCc-ccccCCCCC-ceEEEeccCCeEEEEeccccccCCCC
Confidence            3345665555667888778887654321 11233332222211 122233343 678889999999887542110    1


Q ss_pred             EEEEcCCCCCEEEEEEcCCCC--------EEEEEecCCeEEEEEccC-----------C-ceEEEEeecCCCCEEEEEEe
Q 002564          174 LYEFKGWGSSISSCVSSPALD--------VVAVGCSDGKIHVHNVRY-----------D-EELVTFTHSMRGAVTALAFS  233 (907)
Q Consensus       174 ~~~~~~h~~~I~~l~~sp~~~--------~la~g~~dg~I~iwd~~~-----------~-~~~~~~~~~~~~~v~~l~fs  233 (907)
                      -..|..   .-.-++..+.|+        +...++.+....+++...           . +.+..+... ...|..+-..
T Consensus       154 g~~Fp~---g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~g~~t~q~e~i~~L~~~-~~~v~qllL~  229 (733)
T COG4590         154 GREFPP---GLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILRGDRTTQQEIIRLLSVP-FSDVSQLLLT  229 (733)
T ss_pred             CccCCC---CCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhhcccCchhhhhhhcCCC-ccchHhhEEC
Confidence            111111   111122333332        222333344444444321           1 122223222 4578888899


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCceeeee--eecccc---cCeE-EEEEecCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 002564          234 SDGQPLLASGASSGVISIWNLEKRRLQSV--IREAHD---NAII-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL  307 (907)
Q Consensus       234 ~dg~~~l~sg~~dg~I~iwd~~~~~~~~~--~~~~h~---~~V~-~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~  307 (907)
                      |||+ .+..-+. ..+.++++.+......  ......   ..|+ .+.....|.-++.++.||.|..|---..++.+.+-
T Consensus       230 Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~  307 (733)
T COG4590         230 PDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLN  307 (733)
T ss_pred             CCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcce
Confidence            9999 5555443 6888998876643222  110011   1222 22334567778889999999999332223333332


Q ss_pred             --EeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564          308 --RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       308 --~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (907)
                        +.++-...++..+.-..+.+-+++-+..|++..+...
T Consensus       308 h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st  346 (733)
T COG4590         308 HIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYST  346 (733)
T ss_pred             eeeccccCcccceeeccccccceEEEEcCCCceeeeecc
Confidence              2222222333333333345567777778887776543

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.11  E-value=39  Score=35.82  Aligned_cols=136  Identities=13%  Similarity=0.064  Sum_probs=63.1

Q ss_pred             CEEEEEecC-----CcEEEEecCCCeE---EEEEcCCCCCE--EEEEEcCCCCEEEEEec-----CCeEEEEEccCCceE
Q 002564          152 NKVIVGSQE-----GSLQLWNISTKKK---LYEFKGWGSSI--SSCVSSPALDVVAVGCS-----DGKIHVHNVRYDEEL  216 (907)
Q Consensus       152 ~~l~~~s~d-----g~i~iwd~~~~~~---~~~~~~h~~~I--~~l~~sp~~~~la~g~~-----dg~I~iwd~~~~~~~  216 (907)
                      ...++|+.+     ..+..+|+.+.+-   ...+..-..+.  .+++ .-++++.+.|+.     ...+..||+.+.+-.
T Consensus        74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~-~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~  152 (323)
T TIGR03548        74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSAC-YKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF  152 (323)
T ss_pred             EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEE-EECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence            445666653     3566777766542   12222111111  1122 224566666664     246888888766532


Q ss_pred             EEEeecCCCCEEEEEEecCCCCEEEEEeCCC----cEEEEECCCceeeeeeeccc-ccCe----EEEEEecCCCEEEEEc
Q 002564          217 VTFTHSMRGAVTALAFSSDGQPLLASGASSG----VISIWNLEKRRLQSVIREAH-DNAI----ISLHFFANEPVLMSAS  287 (907)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg----~I~iwd~~~~~~~~~~~~~h-~~~V----~~l~~~~~~~~l~s~~  287 (907)
                      ..-...........+..-+++ +.+.|+.++    .+.+||..+.+-...-.... ..+.    .+.....++.+++.|+
T Consensus       153 ~~~~~p~~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG  231 (323)
T TIGR03548       153 ELPDFPGEPRVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGG  231 (323)
T ss_pred             ECCCCCCCCCCcceEEEECCE-EEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence            211111111222222334566 777777653    35688988775432211000 0111    1111223566778887


Q ss_pred             CC
Q 002564          288 AD  289 (907)
Q Consensus       288 ~d  289 (907)
                      .+
T Consensus       232 ~~  233 (323)
T TIGR03548       232 FN  233 (323)
T ss_pred             cC
Confidence            65

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.02  E-value=2.2  Score=28.86  Aligned_cols=41  Identities=20%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CCCcEEEEEe-CCCcEEEEEcCCCceeeEeeeCCceEEEEEC
Q 002564          567 EDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVSITALSLS  607 (907)
Q Consensus       567 pdg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~s  607 (907)
                      |++++|.++. .+++|.++|..+++.+..+........++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            5777776655 5789999999999998888776556666653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.67  E-value=4.3  Score=39.99  Aligned_cols=74  Identities=9%  Similarity=0.129  Sum_probs=49.1

Q ss_pred             eeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEe-------e-------cCCCCeeeEEECCCCcEEEEEe
Q 002564          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-------E-------GHTDRITDFCFSEDGKWLLSSG  576 (907)
Q Consensus       511 ~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~-------~-------~h~~~I~~l~fspdg~~l~s~s  576 (907)
                      .+..+.++..  +..+++++++.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-|++-+
T Consensus         8 ~i~Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls   85 (219)
T PF07569_consen    8 PIVLGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS   85 (219)
T ss_pred             cEecCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence            3344455444  4456889999999999999999998764432       1       2345566777777776666554


Q ss_pred             CCCcEEEEEcC
Q 002564          577 MDGSLRIWDVI  587 (907)
Q Consensus       577 ~Dg~I~vwd~~  587 (907)
                       +|..+.|+..
T Consensus        86 -ng~~y~y~~~   95 (219)
T PF07569_consen   86 -NGDSYSYSPD   95 (219)
T ss_pred             -CCCEEEeccc
Confidence             4566677654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.26  E-value=44  Score=35.47  Aligned_cols=107  Identities=16%  Similarity=0.220  Sum_probs=67.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccceeeeccccc-------cccCcCCcEEEEEEcCCCCEEEEE
Q 002564          426 AVKACTISACGNFAVLGTAG------GWIERFNLQSGISRGSYLDMSER-------SNYAHNGEVVGVACDSTNTLMISA  492 (907)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~d------g~i~i~d~~~~~~~~~~~~~~~~-------~~~~h~~~v~~l~~s~~~~~l~s~  492 (907)
                      ..-++++.++|.++++.-.+      -.|..|+.. |.....+..+...       .....+....+|+++|+|+.|+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            44567777777777776666      688889877 6666655322221       122356789999999999966665


Q ss_pred             ec-----CC---------eEEEEECC--C-Cceeeee----e------cCcceeEEEEeeCCCEEEEE
Q 002564          493 GY-----HG---------DIKVWDFK--G-RDLKSRW----E------VGCSLVKIVYHRVNGLLATV  533 (907)
Q Consensus       493 ~~-----dg---------~i~iwd~~--~-~~~~~~~----~------~~~~i~~~~~s~~~~~la~~  533 (907)
                      ..     |+         .++++.+.  + ++....+    .      ....++.+.+-+++++|+.-
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence            42     22         15555544  3 2222222    2      23678889999999877654

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=87.11  E-value=47  Score=35.64  Aligned_cols=60  Identities=8%  Similarity=0.082  Sum_probs=28.3

Q ss_pred             CcEEEEECCCceeeeeeecccc-cCeEEEEEecCCCEEEEEcCCC------cEEEEEccCCCCCccee
Q 002564          247 GVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSASADN------SIKMWIFDTTDGDPRLL  307 (907)
Q Consensus       247 g~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~~~d~------~i~vw~~~~~~~~~~~~  307 (907)
                      ..+.+||..+.+-...-..... ..-.+++ .-++++.+.|+.+.      .+..++++.....+..+
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~  234 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKL  234 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeeeeCCCccchheEEEEecCCCceeeec
Confidence            4688899887644332211111 1112222 33666777776531      23445554443344333

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=86.80  E-value=57  Score=39.17  Aligned_cols=76  Identities=13%  Similarity=0.015  Sum_probs=54.3

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee----eccccc-------cccCcCCcEEEEEEcCCCCEEEEE
Q 002564          424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY----LDMSER-------SNYAHNGEVVGVACDSTNTLMISA  492 (907)
Q Consensus       424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~----~~~~~~-------~~~~h~~~v~~l~~s~~~~~l~s~  492 (907)
                      ...|.+++...-+.+++....||+|.++|-.+-+.....    ......       ....+...+..++|||.+-.++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            367888888888999999999999999998877655444    111100       001122245568899999989888


Q ss_pred             ecCCeEE
Q 002564          493 GYHGDIK  499 (907)
Q Consensus       493 ~~dg~i~  499 (907)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            8888865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=85.42  E-value=60  Score=35.29  Aligned_cols=40  Identities=3%  Similarity=0.000  Sum_probs=19.6

Q ss_pred             cEEEEECCCceeeeeeeccc-ccCeEEEEEecCCCEEEEEcC
Q 002564          248 VISIWNLEKRRLQSVIREAH-DNAIISLHFFANEPVLMSASA  288 (907)
Q Consensus       248 ~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~~  288 (907)
                      .+.+||..+.+-...-.... ...-.++... ++++.+.|+.
T Consensus       190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~  230 (376)
T PRK14131        190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE  230 (376)
T ss_pred             eEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence            58889988775443221111 1111233332 5566666664

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=85.24  E-value=42  Score=38.63  Aligned_cols=38  Identities=5%  Similarity=0.225  Sum_probs=32.1

Q ss_pred             cceeeEeecCCcceeEEEcCCeEEEEEEeCCeEEEEEc
Q 002564            6 PYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNC   43 (907)
Q Consensus         6 ~~r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~v~iwd~   43 (907)
                      |...+|.|+|++..+..+.+.+.++++..+++|.+++-
T Consensus       104 ~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k  141 (1243)
T COG5290         104 EMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDK  141 (1243)
T ss_pred             hhhhhccccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence            45678999999998888888888999998999888763

>PLN02153 epithiospecifier protein

Probab=85.15  E-value=58  Score=34.85  Aligned_cols=133  Identities=11%  Similarity=0.138  Sum_probs=60.5

Q ss_pred             CEEEEEecC-----CcEEEEecCCCeE--EEEEcC---CCCCEEEEEEcCCCCEEEEEecC-----------CeEEEEEc
Q 002564          152 NKVIVGSQE-----GSLQLWNISTKKK--LYEFKG---WGSSISSCVSSPALDVVAVGCSD-----------GKIHVHNV  210 (907)
Q Consensus       152 ~~l~~~s~d-----g~i~iwd~~~~~~--~~~~~~---h~~~I~~l~~sp~~~~la~g~~d-----------g~I~iwd~  210 (907)
                      +.++.|+.+     ..+.+||..+.+=  +..+..   ........+..-++++.+.|+.+           ..+.+||.
T Consensus        87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~  166 (341)
T PLN02153         87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI  166 (341)
T ss_pred             EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC
Confidence            445556543     3577888876532  222210   11111212223345666666643           24778888


Q ss_pred             cCCceEEEEee----cCCCCEEEEEEecCCCCEEEEEeC-------------CCcEEEEECCCceeeeeeecc--c-ccC
Q 002564          211 RYDEELVTFTH----SMRGAVTALAFSSDGQPLLASGAS-------------SGVISIWNLEKRRLQSVIREA--H-DNA  270 (907)
Q Consensus       211 ~~~~~~~~~~~----~~~~~v~~l~fs~dg~~~l~sg~~-------------dg~I~iwd~~~~~~~~~~~~~--h-~~~  270 (907)
                      ++.+-...-..    ...... +++ .-+++ +++.|+.             ...+.+||+.+.+-...-..+  . ...
T Consensus       167 ~~~~W~~l~~~~~~~~~r~~~-~~~-~~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~  243 (341)
T PLN02153        167 ADGKWVQLPDPGENFEKRGGA-GFA-VVQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS  243 (341)
T ss_pred             CCCeEeeCCCCCCCCCCCCcc-eEE-EECCe-EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence            76643321110    001111 222 23555 5555542             246888998877544332100  1 111


Q ss_pred             eEEEEEecCCCEEEEEcC
Q 002564          271 IISLHFFANEPVLMSASA  288 (907)
Q Consensus       271 V~~l~~~~~~~~l~s~~~  288 (907)
                      ..++. .-++.+++.|+.
T Consensus       244 ~~~~~-~~~~~iyv~GG~  260 (341)
T PLN02153        244 VFAHA-VVGKYIIIFGGE  260 (341)
T ss_pred             eeeeE-EECCEEEEECcc
Confidence            12222 235667777774

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=85.08  E-value=35  Score=42.95  Aligned_cols=153  Identities=10%  Similarity=0.147  Sum_probs=89.6

Q ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce
Q 002564          179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (907)
Q Consensus       179 ~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~  258 (907)
                      .|...++.+.-+++|..+=.  .|+.++.||........ .......+++.+.-.-||+ +.+   .++. .+-|+..+.
T Consensus       360 aH~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~-~~~~~d~~~S~Ls~qgdG~-lYA---k~~~-~l~nLSs~~  431 (1774)
T PF11725_consen  360 AHIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKP-PPDKSDTPFSSLSRQGDGK-LYA---KDDD-TLVNLSSGQ  431 (1774)
T ss_pred             HHHHHhhccccCCCCCeEEe--ecCceeeeccccceecC-CCCcccchhhhhcccCCCc-eEe---cCCC-ceeecCCCC
Confidence            45566777777777776554  45677778766543221 1122234566666666776 333   2222 134554443


Q ss_pred             eeeeeecccccCeEEEEEecCCCE-EEEEcCCCcEEEEEccCCCCCcce----eEeccCCCCCCeEEEEecCCCEEEEEe
Q 002564          259 LQSVIREAHDNAIISLHFFANEPV-LMSASADNSIKMWIFDTTDGDPRL----LRFRSGHSAPPLCIRFYANGRHILSAG  333 (907)
Q Consensus       259 ~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~i~vw~~~~~~~~~~~----~~~~~~h~~~v~~i~~~~~g~~l~s~~  333 (907)
                      ....    .-..+.+....+++.. ++++-....+.+|+++...+....    .-.+.+-.....+|.++++  .|+.+.
T Consensus       432 ~~~~----~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvAD  505 (1774)
T PF11725_consen  432 MSEA----EVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVAD  505 (1774)
T ss_pred             cchh----hhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEe
Confidence            2211    1245777788889886 555555566799998877554332    1122233336677777765  688899


Q ss_pred             CCCCEEEEEcee
Q 002564          334 QDRAFRLFSVIQ  345 (907)
Q Consensus       334 ~dg~i~iwd~~~  345 (907)
                      .+|.++.=++..
T Consensus       506 seGkLYsa~l~~  517 (1774)
T PF11725_consen  506 SEGKLYSADLPA  517 (1774)
T ss_pred             CCCCEEeccccc
Confidence            999887766643

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PLN02193 nitrile-specifier protein

Probab=85.07  E-value=72  Score=35.92  Aligned_cols=132  Identities=11%  Similarity=0.134  Sum_probs=61.6

Q ss_pred             CEEEEEecC-----CcEEEEecCCCeEEE--EEc--CCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEEccCCceEE
Q 002564          152 NKVIVGSQE-----GSLQLWNISTKKKLY--EFK--GWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELV  217 (907)
Q Consensus       152 ~~l~~~s~d-----g~i~iwd~~~~~~~~--~~~--~h~~~I~~l~~sp~~~~la~g~~d-----g~I~iwd~~~~~~~~  217 (907)
                      ...+.|+.+     +.+..+|+.+.+=..  .+.  .....-.+++ .-++++.+.|+.+     ..+..||+.+.+-..
T Consensus       230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~  308 (470)
T PLN02193        230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFH  308 (470)
T ss_pred             EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence            345555544     357788887654221  111  0011111222 2245566666654     346778877654322


Q ss_pred             EEee----cCCCCEEEEEEecCCCCEEEEEeCC----CcEEEEECCCceeeeeeec---ccccCeEEEEEecCCCEEEEE
Q 002564          218 TFTH----SMRGAVTALAFSSDGQPLLASGASS----GVISIWNLEKRRLQSVIRE---AHDNAIISLHFFANEPVLMSA  286 (907)
Q Consensus       218 ~~~~----~~~~~v~~l~fs~dg~~~l~sg~~d----g~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~  286 (907)
                      .-..    ...... +++ .-+++ +++.|+.+    ..+.+||+.+.+-...-..   .......+++ .-++++++.|
T Consensus       309 ~~~~~~~~~~R~~~-~~~-~~~gk-iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~G  384 (470)
T PLN02193        309 CSTPGDSFSIRGGA-GLE-VVQGK-VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFG  384 (470)
T ss_pred             CCCCCCCCCCCCCc-EEE-EECCc-EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEEC
Confidence            1100    001111 222 23566 66666654    4689999988765433210   0111112222 3356677777


Q ss_pred             cC
Q 002564          287 SA  288 (907)
Q Consensus       287 ~~  288 (907)
                      +.
T Consensus       385 G~  386 (470)
T PLN02193        385 GE  386 (470)
T ss_pred             Cc
Confidence            75

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=84.90  E-value=63  Score=35.06  Aligned_cols=221  Identities=15%  Similarity=0.016  Sum_probs=0.0

Q ss_pred             CCEEEEEecCCcEEEEecCCCCccccceeeEecCC--CcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCC
Q 002564          103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDD--KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW  180 (907)
Q Consensus       103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h  180 (907)
                      +..++.+..+|.|.-.|..++..    +-......  .....-.+..++   ++++++.+|.++.+|.++|+.+......
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~----~W~~~~~~~~~~~~~~~~~~~G---~i~~g~~~g~~y~ld~~~G~~~W~~~~~  140 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLV----KWSYPLLGAVAQLSGPILGSDG---KIYVGSWDGKLYALDASTGTLVWSRNVG  140 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcE----EecccCcCcceeccCceEEeCC---eEEEecccceEEEEECCCCcEEEEEecC


Q ss_pred             C-CCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecC--CCCEEEEEEecCCCCEEEEEeC--CCcEEEEECC
Q 002564          181 G-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM--RGAVTALAFSSDGQPLLASGAS--SGVISIWNLE  255 (907)
Q Consensus       181 ~-~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~--~~~v~~l~fs~dg~~~l~sg~~--dg~I~iwd~~  255 (907)
                      . -.+..-..-.++..++.. .+|.+...|..+|+.+.......  ...+..-....++.  +..+..  ++.+.-.|.+
T Consensus       141 ~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--vy~~~~~~~~~~~a~~~~  217 (370)
T COG1520         141 GSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT--VYVGSDGYDGILYALNAE  217 (370)
T ss_pred             CCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecce--EEEecCCCcceEEEEEcc


Q ss_pred             Cceeeee----eecccc----cCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC
Q 002564          256 KRRLQSV----IREAHD----NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (907)
Q Consensus       256 ~~~~~~~----~~~~h~----~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~  327 (907)
                      +|.....    ...+..    .+.....-.--+..+..++.++.+...+.+..+..++.-........++.......   
T Consensus       218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~---  294 (370)
T COG1520         218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAG---  294 (370)
T ss_pred             CCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecC---


Q ss_pred             EEEEEeCCCCEEEEE
Q 002564          328 HILSAGQDRAFRLFS  342 (907)
Q Consensus       328 ~l~s~~~dg~i~iwd  342 (907)
                            .||.+.++.
T Consensus       295 ------~dG~v~~~~  303 (370)
T COG1520         295 ------ADGKVYIGF  303 (370)
T ss_pred             ------CCccEEEEE

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=83.85  E-value=41  Score=33.62  Aligned_cols=145  Identities=15%  Similarity=0.159  Sum_probs=77.6

Q ss_pred             EEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeC-C--CcEEEEECCC----ceeeeeee-cccccCeEEEEE
Q 002564          205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-S--GVISIWNLEK----RRLQSVIR-EAHDNAIISLHF  276 (907)
Q Consensus       205 I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~-d--g~I~iwd~~~----~~~~~~~~-~~h~~~V~~l~~  276 (907)
                      -.+||+.+++.. .+.....--..+-+|.+||+ ++.+|+. +  ..+++++..+    ........ ......-.+..-
T Consensus        48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~-ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~  125 (243)
T PF07250_consen   48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGR-LLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT  125 (243)
T ss_pred             EEEEecCCCcEE-eccCCCCCcccCcCCCCCCC-EEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence            468999887643 23322233445556889998 8888873 2  4588888654    11111000 012233345566


Q ss_pred             ecCCCEEEEEcCCCc-EEEEEccCCCCCcceeEecc-----CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccce
Q 002564          277 FANEPVLMSASADNS-IKMWIFDTTDGDPRLLRFRS-----GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (907)
Q Consensus       277 ~~~~~~l~s~~~d~~-i~vw~~~~~~~~~~~~~~~~-----~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~  350 (907)
                      .|||+.|+.||.++. ..+|.-.........+..+.     ....---.+...|+|+.++.+..+.  .+||..+.+..+
T Consensus       126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~  203 (243)
T PF07250_consen  126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVR  203 (243)
T ss_pred             CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEe
Confidence            789999999987743 33332111111111111111     0111122455678999998888664  566877665555


Q ss_pred             eec
Q 002564          351 ELS  353 (907)
Q Consensus       351 ~~~  353 (907)
                      .+.
T Consensus       204 ~lP  206 (243)
T PF07250_consen  204 TLP  206 (243)
T ss_pred             eCC
Confidence            443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=83.73  E-value=58  Score=33.74  Aligned_cols=166  Identities=10%  Similarity=0.096  Sum_probs=93.6

Q ss_pred             cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-----CEEEEE-ecCCeEEEEECCCCceeeeeec------
Q 002564          447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-----TLMISA-GYHGDIKVWDFKGRDLKSRWEV------  514 (907)
Q Consensus       447 ~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-----~~l~s~-~~dg~i~iwd~~~~~~~~~~~~------  514 (907)
                      .|.+||+.+++.++.+.-+....  ...+....+.++...     .++..+ ...+-|.|+|+.+++..+....      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~--~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p  112 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIA--PPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP  112 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred             EEEEEECCCCcEEEEEECChHHc--ccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence            68889999999888776432211  135678888888732     233333 3446899999998865443322      


Q ss_pred             --------------CcceeEEEEee---CCCEEEEEeCCCeEEEEEcccc--------------eeEEEeecCC-CCeee
Q 002564          515 --------------GCSLVKIVYHR---VNGLLATVADDLVIRLFDVVAL--------------RMVRKFEGHT-DRITD  562 (907)
Q Consensus       515 --------------~~~i~~~~~s~---~~~~la~~~~dg~I~v~d~~~~--------------~~~~~~~~h~-~~I~~  562 (907)
                                    ...+..++.+|   +++.|....-.+ -++|.+.+.              +.+..+ |.. .....
T Consensus       113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g  190 (287)
T PF03022_consen  113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDG  190 (287)
T ss_dssp             SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECE
T ss_pred             cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccCCCCce
Confidence                          23455566655   555555554322 123333221              112222 222 35667


Q ss_pred             EEECCCCcEEEEEeCCCcEEEEEcCCCc---eeeEe-eeCC---ceEEEEECC--CCceEEEE
Q 002564          563 FCFSEDGKWLLSSGMDGSLRIWDVILAR---QIDAI-HVDV---SITALSLSP--NMDVLATA  616 (907)
Q Consensus       563 l~fspdg~~l~s~s~Dg~I~vwd~~~~~---~~~~~-~~~~---~v~~l~~sp--dg~~lat~  616 (907)
                      ++++++|...++--..+.|..|+..+.-   ....+ +.+.   -+.++.+.+  +|.+.+.+
T Consensus       191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            8999999998888899999999987521   22222 2222   267888888  66555544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=82.79  E-value=4.8  Score=46.52  Aligned_cols=72  Identities=17%  Similarity=0.256  Sum_probs=45.7

Q ss_pred             eCCCEEEEEeCCCeEEEEEccc----ceeEEE-----------eec-----------CCCCeeeEEECC----CCcEEEE
Q 002564          525 RVNGLLATVADDLVIRLFDVVA----LRMVRK-----------FEG-----------HTDRITDFCFSE----DGKWLLS  574 (907)
Q Consensus       525 ~~~~~la~~~~dg~I~v~d~~~----~~~~~~-----------~~~-----------h~~~I~~l~fsp----dg~~l~s  574 (907)
                      ++...++++..||.+.......    +.....           +.+           ..+.+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4677888888888888777654    211111           110           113455666766    6789999


Q ss_pred             EeCCCcEEEEEcCCCceeeEee
Q 002564          575 SGMDGSLRIWDVILARQIDAIH  596 (907)
Q Consensus       575 ~s~Dg~I~vwd~~~~~~~~~~~  596 (907)
                      .+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=82.61  E-value=1e+02  Score=35.65  Aligned_cols=113  Identities=14%  Similarity=0.235  Sum_probs=70.5

Q ss_pred             EEEEcCCCCEEEEEecCCeEEEEEcc-CCceEEEEeecCCCCEEEEEEecCC--CCEEEEEeCC-CcEEEEECCCc----
Q 002564          186 SCVSSPALDVVAVGCSDGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDG--QPLLASGASS-GVISIWNLEKR----  257 (907)
Q Consensus       186 ~l~~sp~~~~la~g~~dg~I~iwd~~-~~~~~~~~~~~~~~~v~~l~fs~dg--~~~l~sg~~d-g~I~iwd~~~~----  257 (907)
                      +..++|+.+.+-.|=....|--|=+. |.+.+..+.-.....|.||..-...  ..+.++|-.+ +.-++-.+..+    
T Consensus        32 s~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~  111 (670)
T PF10395_consen   32 SDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGST  111 (670)
T ss_pred             ecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccc
Confidence            33567777777666555556555543 5677777776666777887765331  2244445333 32333333222    


Q ss_pred             -------eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564          258 -------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (907)
Q Consensus       258 -------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~  298 (907)
                             +....+...-...|.++.|.+++..+++.-.+|.|.+|+++
T Consensus       112 ~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~  159 (670)
T PF10395_consen  112 EDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFS  159 (670)
T ss_pred             cccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence                   11122222346789999999999999999999999999993

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.29  E-value=1.4e+02  Score=37.07  Aligned_cols=73  Identities=16%  Similarity=0.130  Sum_probs=45.7

Q ss_pred             CcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEccccee
Q 002564          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM  549 (907)
Q Consensus       472 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~  549 (907)
                      -+..++.+..+...+.... +...+.+-+|+.........+.....-.    ++++..++++..||.+..||...++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  196 LIEYESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccccccceeeeecCCCcce-eeeeeeeeehhcccccchhhcccccccC----ccCCceEEEEEecCCEEeeecCCCce
Confidence            3455555655554444333 3444677777765544444333322111    77899999999999999999988755

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.09  E-value=42  Score=41.43  Aligned_cols=70  Identities=19%  Similarity=0.240  Sum_probs=42.0

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCce
Q 002564          516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ  591 (907)
Q Consensus       516 ~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~  591 (907)
                      .++.+..+...+..+. +..-+.+-+|+.........+.     +.....++++..++++..||.+.+||...|+.
T Consensus       199 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  199 YESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYL-----PNGQLESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cccceeeeecCCCcce-eeeeeeeeehhcccccchhhcc-----cccccCccCCceEEEEEecCCEEeeecCCCce
Confidence            3444444444343332 3334556666554433333332     22222288999999999999999999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	907
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-10
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-08
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-10
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-10
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-10
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-10
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		8e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		8e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-08
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-08
2h9l_A	329	Wdr5delta23 Length = 329		6e-10
2h9l_A	329	Wdr5delta23 Length = 329		2e-08
2h9l_A	329	Wdr5delta23 Length = 329		8e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		8e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-08
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-10
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		9e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-08
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		9e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-08
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		8e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		9e-04
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-08
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		6e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		6e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		6e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-08
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		7e-08
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-08
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		7e-08
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-07
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		7e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		6e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		6e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		6e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		6e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		1e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		1e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		3e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-04
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		3e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-04
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		3e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		4e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		4e-04

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V    +S  GNFAV  +    +  +NLQ+G  +  +L         H  +V+ VA    N
Sbjct: 70  VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL--------GHTKDVLSVAFSPDN 121
Query: 487 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 539
             ++S G    ++VW+ KG       R   + W    S V+        ++ +   D ++
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDW---VSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599
           +++D+   R+V   +GHT+ +T    S DG    SS  DG  R+WD+     +  +    
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA 238
Query: 600 SITALSLSPN 609
            I  +  SPN
Sbjct: 239 PINQICFSPN 248

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 34/293 (11%)
Query: 63  ASYRDYTFAAYGNHIAVVKRAHQVATWSR----------HSAKVNLLLLF--GEHILSID 110
           +S R   F+  G  IA       V  W+R          HS+ VN +     G+ I S  
Sbjct: 222 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 111 IDGNMFIWAFKG-IEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS 169
            D  + +W   G + + L   GH              PD     +   S + +++LWN  
Sbjct: 282 DDKTVKLWNRNGQLLQTL--TGH----SSSVWGVAFSPDGQT--IASASDDKTVKLWN-R 332
Query: 170 TKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVT 228
             + L    G           P    +A    D  + + N R  + L T T HS   +V 
Sbjct: 333 NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS--SVR 389
Query: 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA 288
            +AFS DGQ  +AS +    + +WN   + LQ++    H +++  + F  ++  + SAS 
Sbjct: 390 GVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDDQTIASASD 446
Query: 289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341
           D ++K+W     + + +LL+  +GHS+    + F  +G+ I SA  D+  +L+
Sbjct: 447 DKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 13/189 (6%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
           +   S + +++LWN    + L    G           P    +A    D  + + N R  
Sbjct: 72  IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNG 129
Query: 214 EELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII 272
           + L T T HS   +V  +AFS DGQ  +AS +    + +WN   + LQ++    H +++ 
Sbjct: 130 QLLQTLTGHSS--SVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVW 184
Query: 273 SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332
            + F  +   + SAS D ++K+W     + + +LL+  +GHS+    + F  +G+ I SA
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 333 GQDRAFRLF 341
             D+  +L+
Sbjct: 240 SDDKTVKLW 248

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 460 GSYLDMSERSNY-AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 518
           GS++ + ER+   AH+  V GVA       + SA     +K+W+  G+ L++      S+
Sbjct: 1   GSHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 60
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
             + +      +A+ +DD  ++L++    ++++   GH+  +    FS DG+ + S+  D
Sbjct: 61  WGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDD 119
Query: 579 GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629
            ++++W+              S+  ++ SP+   +A+A  D+  V LW NR
Sbjct: 120 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLW-NR 168

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 44  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 103
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 104 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 163
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 164 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 220
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 221 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 271

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
           I  N+ PVG +++  + T          MH  T    ++  SQ+G L +W+  T  K++ 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
                         P+ + VA G  D    ++N++  E  V  +  + G    L+   F 
Sbjct: 93  IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
            D Q + +SG ++   ++W++E  +  +     H   ++SL    +  + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +W  D  +G  R  +  +GH +    I F+ NG    +   D   RLF +  DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 138 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 192
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 246
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 247 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 274

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 67
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 68  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 105
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 157
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 216
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 217 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 275 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 312

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 127
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 128 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 161

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 138 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 192
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 246
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 247 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 274

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 15  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 67
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 68  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 105
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 157
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 216
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 217 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 275 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 312

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 127
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 128 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 161

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 74  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 134 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 188
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 242
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 243 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 270

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 11  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 63
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 64  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 101
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 102 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 153
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 212
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 213 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 271 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 308

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 79  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 139 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 193
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 247
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 248 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 275

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 16  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 68
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 69  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 106
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 107 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 158
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 217
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 218 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 276 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 313

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 11  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 70
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 71  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 128
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 129 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 162

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 144 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 198
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 252
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 253 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 280

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 74  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 111
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 134 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 167

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 77  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 137 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 191
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 192 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 245
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 246 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 273

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 14  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 66
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 67  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 104
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 105 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 156
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 215
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 216 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 274 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 311

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 95  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 155 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 209
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 263
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 264 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 291

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 32  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 84
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W     V     L+    
Sbjct: 85  ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 122
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 123 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 174
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 233
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 234 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 292 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 329

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 27  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 86
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 87  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 144
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
           D S+RIWDV   + +            +L  + D ++  H +++G
Sbjct: 145 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 178

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 160 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 214
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 268
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 269 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 296

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 73  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 241

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 144 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 198
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 252
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 253 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 280

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 74  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 111
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 578 DGSLRIWDVILARQIDAI 595
           D S+RIWDV   + +  +
Sbjct: 134 DESVRIWDVKTGKCLKTL 151

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 144 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 198
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 252
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 253 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 280

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 21  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 74  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 111
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 578 DGSLRIWDVILARQIDAI 595
           D S+RIWDV   + +  +
Sbjct: 134 DESVRIWDVKTGKCLKTL 151

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 83  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 143 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 197
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 251
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 252 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 279

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+F  +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 20  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 72
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 73  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 110
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G           ++  AH+  V  V  
Sbjct: 111 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 162
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 221
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 222 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 280 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 317

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 15  KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 74
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 75  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 132
Query: 578 DGSLRIWDVILARQIDAI 595
           D S+RIWDV   + +  +
Sbjct: 133 DESVRIWDVKTGKCLKTL 150

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 277

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 222

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 277

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 222

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 162 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 216
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 270
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 271 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 298

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 75  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 134
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 194
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 243

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
             + L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 277

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
           G+Y    E++   H   +  VA  S + L++SA     +K+WD   G+ LK+       +
Sbjct: 54  GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
               ++  + L+ + + D  +R++DV   + ++    H+D ++   F+ DG  ++SS  D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
           G  RIWD    + +  +  D +  ++ +  SPN   +  A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 222

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
               L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGMCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN++K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNMVYIWNL----QTKEIVQK 277

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 55/339 (16%)
Query: 306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+   +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 71  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 108
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G        M  ++  AH+  V  V  
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------MCLKTLPAHSDPVSAVHF 160
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG  +LA   D+  +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 219
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
           +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     +  
Sbjct: 220 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
           +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 278 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 315

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 130
Query: 578 DGSLRIWDV 586
           D S+RIWDV
Sbjct: 131 DESVRIWDV 139

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+   +S+ G FA+ G+  G +  ++L +G+S         R    H  +V+ VA    N
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--------RRFVGHTKDVLSVAFSLDN 484
Query: 487 TLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDLVIR 540
             ++SA     IK+W+  G    +  E G       S V+   + +   + + + D  ++
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           ++++   ++     GHT  ++    S DG    S G DG + +WD+   +++ ++  +  
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604
Query: 601 ITALSLSPNMDVLATAHVDQNGVYLW 626
           I AL  SPN   L  A   ++G+ +W
Sbjct: 605 IHALCFSPNRYWLCAAT--EHGIKIW 628

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 107/212 (50%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  S + +L++W++S+ K L   KG           P  +++  G  D  + + +V+
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
               L T   HS    V+A+ F+ DG  L+ S +  G+  IW+    + L+++I +  DN
Sbjct: 141 TGMCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
             +S + F  N   +++A+ DN +K+W  D + G  + L+  +GH     CI  +AN   
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
             G+ I+S  +D    ++++    Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNMVYIWNL----QTKEIVQK 277

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/340 (19%), Positives = 139/340 (40%), Gaps = 57/340 (16%)
Query: 306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
           L+   +GH+     ++F  NG  + S+  D+  +++     +  + +S   +        
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
                             I +  W    N++    D     +W + +       L+    
Sbjct: 71  ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 108
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
           +   V  C  +   N  V G+    +  +++++G        M  ++  AH+  V  V  
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------MCLKTLPAHSDPVSAVHF 160
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG---LLATVADDLV 538
           +   +L++S+ Y G  ++WD   G+ LK+  +     V  V    NG   L AT+ +DL 
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL- 219
Query: 539 IRLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQID 593
            +L+D    + ++ + GH +    +C   +     GKW++S   D  + IW++     + 
Sbjct: 220 -KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
Query: 594 AI--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
            +  H DV I+  +  P  +++A+A ++ +  + LW + C
Sbjct: 277 KLQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 315

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
           + NYA       H   V  V        + S+     IK+W  + G+  K+       + 
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
            + +   + LL + +DD  ++++DV + + ++  +GH++ +  FC  F+     ++S   
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 130
Query: 578 DGSLRIWDV 586
           D S+RIWDV
Sbjct: 131 DESVRIWDV 139

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK-IVYHRVNGLL 530
            H   V  V      ++M+SA     IKVWD++  D +   +     V+ I +     LL
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590
           A+ + D+ I+L+D      +R   GH   ++      +G  ++S+  D ++++W+V    
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 591 QIDAIHVDVSITALSLSPNMD--VLATAHVDQNGVYLWV 627
            +           + + PN D  ++A+   DQ  V +WV
Sbjct: 226 CVKTFTGHREWVRM-VRPNQDGTLIASCSNDQT-VRVWV 262

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 8/172 (4%)
Query: 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS--- 517
           S LD   R NY  + +++   C      +I  G    + +WD      + + E+  S   
Sbjct: 89  SQLDCLNRDNYIRSCKLLPDGC-----TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143
Query: 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577
              +     + +  +   D  I ++D+    +VR+F+GHTD  +    S DG  L + G+
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629
           D ++R WD+   RQ+        I +L   P  + LA      N   L VN+
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V    IS+ G FA+ G+  G +  ++L +G         + R    H  +V+ VA  S N
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDN 117
Query: 487 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 539
             ++S      IK+W+  G        +  S W    S V+   +  N ++ +   D ++
Sbjct: 118 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW---VSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599
           +++++   ++     GHT  +     S DG    S G DG   +WD+   + +  +    
Sbjct: 175 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 234
Query: 600 SITALSLSPNMDVLATA 616
            I AL  SPN   L  A
Sbjct: 235 IINALCFSPNRYWLCAA 251

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V    IS+ G FA+ G+  G +  ++L +G +         R    H  +V+ VA  S N
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTT--------TRRFVGHTKDVLSVAFSSDN 140
Query: 487 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 539
             ++S      IK+W+  G        +  S W    S V+   +  N ++ +   D ++
Sbjct: 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW---VSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599
           +++++   ++     GHT  +     S DG    S G DG   +WD+   + +  +    
Sbjct: 198 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 257
Query: 600 SITALSLSPNMDVLATA 616
            I AL  SPN   L  A
Sbjct: 258 IINALCFSPNRYWLCAA 274

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 62  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 113
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 114 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 171 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 231 QDEVFSLAFSPNRYWLAAA 249

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V+ V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           +++IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
           +++ +++   ++   F GH   I     S DG  + S+G DG + +W++   + +  +  
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 467  ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKI 521
            ER    H G V+  A  S  T   S       K+W F   DL S     +   GC  V+ 
Sbjct: 1085 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGC--VRC 1139
Query: 522  VYHRVNG-LLATVADDLVIRLFDVVALRMVRKF------EG---HTDRITDFCFSEDGKW 571
                ++G LLAT  D+  IR+++V   +++         EG   H   +TD CFS D K 
Sbjct: 1140 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1199
Query: 572  LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 623
            L+S+G  G L+ W+V         + +  ++  + +SP+     T  VD  G+
Sbjct: 1200 LVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT--VDNLGI 1248

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 22/123 (17%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 286
           + ++ FS DG+  LA+GA   +I IW++E R++  +I + H+  I SL +F +   L+S 
Sbjct: 126 IRSVCFSPDGK-FLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 287 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR--------FYANGRHILSAGQDRAF 338
           S D ++++W              R+G  +  L I            +G++I +   DRA 
Sbjct: 184 SGDRTVRIW------------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231
Query: 339 RLF 341
           R++
Sbjct: 232 RVW 234

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588
            LAT A+D +IR++D+   ++V   +GH   I    +   G  L+S   D ++RIWD+  
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 589 ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMF 632
            +    + ++  +T +++SP       A      V +W +   F
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 467  ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKI 521
            ER    H G V+  A  S  T   S       K+W F   DL S     +   GC  V+ 
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGC--VRC 1132
Query: 522  VYHRVNG-LLATVADDLVIRLFDVVALRMVRKF------EG---HTDRITDFCFSEDGKW 571
                ++G LLAT  D+  IR+++V   +++         EG   H   +TD CFS D K 
Sbjct: 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1192
Query: 572  LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 623
            L+S+G  G L+ W+V         + +  ++  + +SP+     T  VD  G+
Sbjct: 1193 LVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT--VDNLGI 1241

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
           V+ CT++A G +A+  +    +  +++ +G +   ++         H  +V  V  D   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVXSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
           + +IS      IKVW  KG+ L +      W    S V++V +         + +  +D 
Sbjct: 120 SXIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
            ++ +++   ++   F GH   I     S DG  + S+G DG + +W++   +    +  
Sbjct: 177 XVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
              + +L+ SPN   LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  +H+   NE +L S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  +H+   NE +L S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 14/208 (6%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
           N ++  SQ+G L +WN  T +K +  K            P    VA G  D    + N+ 
Sbjct: 79  NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138
Query: 212 YDEE------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR- 264
              +      +       +G  ++  +  D +  L +G+      +W++   +  S+   
Sbjct: 139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198
Query: 265 ---EAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320
                H   ++SL   + N  + +S S D ++++W    T    R +R   GH      +
Sbjct: 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT---SRAVRTYHGHEGDINSV 255
Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQ 348
           +F+ +G+   +   D   RLF +    Q
Sbjct: 256 KFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 23/163 (14%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVY 523
            H  EV  VA    N  ++SAG   +IK+W+  G        ++  S W V C     + 
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW-VSCVRYSPIM 174
Query: 524 HRVNGL------LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577
              N +       A+V  D  +++++    ++   F+ H   +     S +GK++ + G 
Sbjct: 175 KSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233
Query: 578 DGSLRIWDVI----LARQIDAIHVDVSITALSLSPNMDVLATA 616
           D  L IWD++      R+ DA     +I  ++ +P +  +A  
Sbjct: 234 DKKLLIWDILNLTYPQREFDA---GSTINQIAFNPKLQWVAVG 273

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L S
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L S
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 342 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 381

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L S
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 383

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
           V  L+F+   + +LA+G++   +++W+L   +L+    E+H + I  + +   NE +L S
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
           +  D  + +W            D  DG P LL    GH+A
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTA 375

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302
           G + G I + +     LQ  I +AH + I  L FF +   L+S+S D  +K+W     DG
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--SVKDG 168
Query: 303 -DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340
            +PR L    GH A    I     GR++LSA  D   RL
Sbjct: 169 SNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRL 204

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302
           G + G I + +     LQ  I +AH + I  L FF +   L+S+S D  +K+W     DG
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--SVKDG 171
Query: 303 -DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340
            +PR L    GH A    I     GR++LSA  D   RL
Sbjct: 172 SNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRL 207

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 81  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 138
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 139 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Query: 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497
           FA  G   G I  +N   G   G + D S + N AH+G V G+      T + SA     
Sbjct: 205 FASTG-GDGTIVLYNGVDGTKTGVFEDDSLK-NVAHSGSVFGLTWSPDGTKIASASADKT 262
Query: 498 IKVWDFKGRDLKSRWEVGCSL----VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF 553
           IK+W+     ++    VG  +    + I++ +    L +++ +  I   +     + +  
Sbjct: 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANGFINFVNPELGSIDQVR 320
Query: 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
            GH   IT    S DGK L S+  +G +  WD+
Sbjct: 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDI 353

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 80  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 138 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 515 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574
           G  ++ I Y      LA+ A D +I +FD+   +++   EGH   I    FS D + L++
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 575 SGMDGSLRIWDV 586
           +  DG ++I+DV
Sbjct: 224 ASDDGYIKIYDV 235

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 80  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 138 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 76  SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 133
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 134 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
           S+   PLLA   S G+I I N +  + ++  +   H NAI  L F   +P +L+S S D+
Sbjct: 117 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 174
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
           ++++W    TD    +     GH    L   +   G  I+S G D + +L+ +
Sbjct: 175 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	907
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-23
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-21
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-17
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-19
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-19
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-17
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	9e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	6e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-06

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.0 bits (245), Expect = 6e-23
 Identities = 37/303 (12%), Positives = 88/303 (29%), Gaps = 30/303 (9%)

Query: 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364
           R  R   GH A    + +  + R ++SA QD    ++      +   +  R         
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP--- 421
                 +    +         +    NV                 F+    I+       
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 422 ----------------ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 465
                            +   V + +++      V G      + ++++ G+ R ++   
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF--- 222

Query: 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV---WDFKGRDLKSRWEVGCSLVKIV 522
                  H  ++  +          +       ++      +     S   + C +  + 
Sbjct: 223 -----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 582
           + +   LL    DD    ++D +         GH +R++    ++DG  + +   D  L+
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337

Query: 583 IWD 585
           IW+
Sbjct: 338 IWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.3 bits (225), Expect = 2e-20
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 3/156 (1%)

Query: 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC 200
               +         + G+ + S +LW++        F G  S I++    P  +  A G 
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245

Query: 201 SDGKIHV-HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259
            D    +       E +     ++   +T+++FS  G+ LL +G      ++W+  K   
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADR 304

Query: 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
             V+   HDN +  L    +   + + S D+ +K+W
Sbjct: 305 AGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.4 bits (150), Expect = 7e-11
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 12/155 (7%)

Query: 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG 161
                +S   D +  +W  +         GH    +         P+   N    GS + 
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGH----ESDINAICFFPNG--NAFATGSDDA 248

Query: 162 SLQL--WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTF 219
           + +L       +   Y        I+S   S +  ++  G  D   +V +    +     
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 220 T-HSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253
             H     V+ L  + DG   +A+G+    + IWN
Sbjct: 309 AGHD--NRVSCLGVTDDGM-AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 34/331 (10%), Positives = 85/331 (25%), Gaps = 36/331 (10%)

Query: 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231
           +     +G  + I +        ++     DGK+ + +     ++          V   A
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCA 104

Query: 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS 291
           ++  G  +   G  +         +     V RE   +          +   +  S+ ++
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE 351
                        +     +GH+   + +    + R  +S   D + +L+ V +    + 
Sbjct: 165 TCALWDIE---TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221

Query: 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411
            +       A               I F        +     T   D             
Sbjct: 222 FTGHESDINA---------------ICFF------PNGNAFATGSDDAT---CRLFDLRA 257

Query: 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471
             E +          + + + S  G   + G        ++       G           
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--------A 309

Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502
            H+  V  +        + +  +   +K+W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALS 605
           +R  R   GH  +I    +  D + L+S+  DG L IWD     ++ AI +    +   +
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 606 LSPNMDVLATAHVDQNGVYLWVNRCMFS 633
            +P+ + +A   +D       +     +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGN 132

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.9 bits (242), Expect = 1e-22
 Identities = 40/312 (12%), Positives = 97/312 (31%), Gaps = 29/312 (9%)

Query: 303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362
            P      SGH +P   + F+     ++SA +D   +++        R L     + +  
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

Query: 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN------------- 409
                 + L              +   C       D   + V  + N             
Sbjct: 66  SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125

Query: 410 ---FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG------ 460
               V   + ++    +   V+    +  G      +    +  + + +   +       
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185

Query: 461 ------SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 514
                 S+   S  S+ +                ++S      IK+WD            
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245

Query: 515 GCSLVK-IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL 573
             + V+ +++H     + + ADD  +R++D    R ++    H   +T   F +   +++
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305

Query: 574 SSGMDGSLRIWD 585
           +  +D ++++W+
Sbjct: 306 TGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.4 bits (207), Expect = 4e-18
 Identities = 36/276 (13%), Positives = 93/276 (33%), Gaps = 29/276 (10%)

Query: 85  QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI 144
              T   H+  V  +       L      +M I  +              +         
Sbjct: 51  FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE----CIRTMHGHDHNVSS 106

Query: 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGK 204
           +      + ++  S++ ++++W + T   +  F G    +     +    ++A   +D  
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166

Query: 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ-------------------PLLASGAS 245
           + V  V   E         R  V  ++++ +                     P L SG+ 
Sbjct: 167 VRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225

Query: 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 305
              I +W++        +   HDN +  + F +    ++S + D ++++W  D  +   R
Sbjct: 226 DKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVW--DYKNK--R 280

Query: 306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341
            ++  + H      + F+    ++++   D+  +++
Sbjct: 281 CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 6/133 (4%)

Query: 75  NHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVK 134
             I+    +   +      ++       G  +LS   D  + +W        +  VGH  
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-- 246

Query: 135 LDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD 194
             D +    + H       ++  + + +L++W+   K+ +         ++S        
Sbjct: 247 --DNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302

Query: 195 VVAVGCSDGKIHV 207
            V  G  D  + V
Sbjct: 303 YVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 548 RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
                  GH   +T   F      ++S+  D ++++WD 
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY 46

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 43/158 (27%)

Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY-------- 523
            H   V  V      ++M+SA     IKVWD++  D +   +     V+ +         
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 524 -----------------------------------HRVNGLLATVADDLVIRLFDVVALR 548
                                                    + + + D  I++++V    
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
            V+ F GH + +     ++DG  + S   D ++R+W V
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.6 bits (236), Expect = 2e-21
 Identities = 45/394 (11%), Positives = 105/394 (26%), Gaps = 64/394 (16%)

Query: 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA---HDNAIISLHFFANEPVLMS 285
            L   S   P      ++    ++N    R   V       H + +  + F  +   L +
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT 79

Query: 286 ASADNSIKMWIFDT--------------TDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
              + + +++                   D +                + F  +G+ + +
Sbjct: 80  GC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138

Query: 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391
             +DR  R++ +   +    L        +       +    K V       +R  D   
Sbjct: 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD----KLVSGSGDRTVRIWDLRT 194

Query: 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451
                  + +  V  +                            G +   G+    +  +
Sbjct: 195 GQCSLTLSIEDGVTTVAVS----------------------PGDGKYIAAGSLDRAVRVW 232

Query: 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 511
           + ++G      LD    S   H   V  V        ++S      +K+W+ +  + KS 
Sbjct: 233 DSETGFLVER-LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291

Query: 512 WEVGCSLVKIVYHRVNG-------------LLATVADDLVIRLFDVVALRMVRKFEGHTD 558
            +   S    V +  +               + + + D  +  +D  +   +   +GH +
Sbjct: 292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 351

Query: 559 RITDFC------FSEDGKWLLSSGMDGSLRIWDV 586
            +             +     +   D   RIW  
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 3e-10
 Identities = 47/399 (11%), Positives = 104/399 (26%), Gaps = 63/399 (15%)

Query: 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK----LYEFKGWGSSISSCVSSPALDV 195
            P  +      +   +         L+N +  ++    L++     S +     S   + 
Sbjct: 17  PPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY 76

Query: 196 VAVGCSDGKIHVHNVRYDEELVTFT-----------------HSMRGAVTALAFSSDGQP 238
           +A GC +    V+ V     +   +                  S    + ++ FS DG+ 
Sbjct: 77  LATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 134

Query: 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298
                A+     +  +     + ++     +                 S      + I+D
Sbjct: 135 ---FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191

Query: 299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358
              G        S             +G++I +   DRA R++          L   + +
Sbjct: 192 LRTGQCS--LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249

Query: 359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD-------TAQAYVWRLQNFV 411
               K            V +        RD  +VV+  +D          A         
Sbjct: 250 GTGHK----------DSVYSVVFT----RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471
                      +   V +   +    + + G+    +  ++ +SG               
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML--------Q 347

Query: 472 AHNGEVVGVAC------DSTNTLMISAGYHGDIKVWDFK 504
            H   V+ VA            +  +       ++W +K
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 3e-09
 Identities = 40/380 (10%), Positives = 96/380 (25%), Gaps = 68/380 (17%)

Query: 263 IREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 319
            R  H   I       +    P  +    ++   ++           L     H++   C
Sbjct: 8   QRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC 67

Query: 320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 379
           ++F  +G ++ + G ++  +++ V        LS    A +  +             I  
Sbjct: 68  VKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI-- 124

Query: 380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA 439
                                + +    +  V+          +     +      G   
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG--- 181

Query: 440 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 499
                         ++             +    +G             + +      ++
Sbjct: 182 -----------SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 230

Query: 500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR 559
           VWD +   L  R +                                         GH D 
Sbjct: 231 VWDSETGFLVERLDS----------------------------------ENESGTGHKDS 256

Query: 560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-------------ITALSL 606
           +    F+ DG+ ++S  +D S+++W++  A          S             + +++ 
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 607 SPNMDVLATAHVDQNGVYLW 626
           + N + + +   D  GV  W
Sbjct: 317 TQNDEYILSGSKD-RGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 3e-08
 Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 20/132 (15%)

Query: 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG------------WGSSISSCVS 189
           + +   D     V+ GS + S++LWN+       + K                 + S  +
Sbjct: 259 SVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 190 SPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ-----PLLASGA 244
           +   + +  G  D  +   + +    L+      R +V ++A ++         + A+G+
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 245 SSGVISIWNLEK 256
                 IW  +K
Sbjct: 376 GDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 3e-06
 Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 14/142 (9%)

Query: 84  HQVATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTP 141
            +  + + H   V  ++    G+ ++S  +D ++ +W  +                + T 
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 142 TCIMHPDTYL------NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVS------ 189
                    +        ++ GS++  +  W+  +   L   +G  +S+ S         
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364

Query: 190 SPALDVVAVGCSDGKIHVHNVR 211
            P  +V A G  D K  +   +
Sbjct: 365 GPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (110), Expect = 7e-06
 Identities = 32/258 (12%), Positives = 85/258 (32%), Gaps = 18/258 (6%)

Query: 426 AVKACTISACGNFAVLGTAGG----WIERFNLQSGISRGSYLDMSER-----SNYAHNGE 476
            V     S  G +   G         +   +L + +S  S  +         S+ + +  
Sbjct: 64  VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123

Query: 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 536
           +  V        + +      I++WD + R +    +     +  + +  +G        
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183

Query: 537 LV-IRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 595
              +R++D+   +            T      DGK++ +  +D ++R+WD      ++ +
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243

Query: 596 HVDV--------SITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEI 647
             +         S+ ++  + +   + +  +D++     +       DS   +  + +  
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303

Query: 648 VSVKMPSVSSVEGCQDEN 665
                  V SV   Q++ 
Sbjct: 304 YIGHKDFVLSVATTQNDE 321

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.2 bits (232), Expect = 4e-21
 Identities = 40/373 (10%), Positives = 103/373 (27%), Gaps = 21/373 (5%)

Query: 219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFF 277
           +   +   ++  A++ D    +A   ++  + I+     +   V   + H+  +  + + 
Sbjct: 2   YHSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337
            +   +++   D +  +W         +        +    C+R+  N +        R 
Sbjct: 61  PDSNRIVTCGTDRNAYVW--TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 118

Query: 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397
             +    Q+             R+  L +      +         + R            
Sbjct: 119 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178

Query: 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457
                +  ++    L       C      V     SA G+     +    +   +    +
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSC----GWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 234

Query: 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS 517
           +  +    +                  T + +++AG+     ++ +     K  +     
Sbjct: 235 AVATLASETLPLLA---------VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLD 285

Query: 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW----LL 573
           + K    R         +       +  A         H + ++       GK       
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 345

Query: 574 SSGMDGSLRIWDV 586
           ++GMDG + IWDV
Sbjct: 346 TTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.6 bits (202), Expect = 2e-17
 Identities = 37/363 (10%), Positives = 95/363 (26%), Gaps = 19/363 (5%)

Query: 269 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328
             I    +  +   +     ++ + ++  + +      +     H+     + +  +   
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIY--EKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388
           I++ G DR   ++++        L    + + AR ++    E K           I   +
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI 448
             N         +     + +     + +               S      +       +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLL----------AAGSCDFKCRIFSAYIKEV 175

Query: 449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL 508
           E     +              + +  G V GV   +  + +    +   + + D   +  
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235

Query: 509 KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 568
            +        +  V       L     D    LF   +      F G  D          
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 295

Query: 569 GKWLLSSGMDGSLRIWD-VILARQIDAIHVDVSITALSLSP----NMDVLATAHVDQNGV 623
                   +D              +D++H + S++ +S+            T  +D  G+
Sbjct: 296 TARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLSGGKAKCSQFCTTGMD-GGM 353

Query: 624 YLW 626
            +W
Sbjct: 354 SIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.5 bits (142), Expect = 8e-10
 Identities = 48/373 (12%), Positives = 107/373 (28%), Gaps = 34/373 (9%)

Query: 142 TCI-MHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSPALDVVAV 198
           +C   + D    ++ +      + ++  S  K  +++E K     ++    +P  + +  
Sbjct: 11  SCHAWNKDR--TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 199 GCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258
             +D   +V  ++      T               +  +   A G+ S VISI   E+  
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 259 ---LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA 315
              +   I++   + ++SL +  N  +L + S D   +++     + + R          
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER------PAPT 182

Query: 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 375
           P      +       S+       +       +   +S       A     K     L  
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD-ADKKMAVATLAS 241

Query: 376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC 435
                 A     +   V   H      + +       G+       + P       ++A 
Sbjct: 242 ETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA---GKLSFGGRLDVPKQSSQRGLTAR 298

Query: 436 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC----DSTNTLMIS 491
             F             NL    S           +  H   V  ++      +  +   +
Sbjct: 299 ERFQ------------NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT 346

Query: 492 AGYHGDIKVWDFK 504
            G  G + +WD +
Sbjct: 347 TGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.3 bits (126), Expect = 7e-08
 Identities = 11/81 (13%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV----DVSITALSLSPNMD 611
             + I+   +++D   +     +  + I++     +   +H     +  +T +  +P+ +
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSN 64

Query: 612 VLATAHVDQNGVYLWVNRCMF 632
            + T   D+N  Y+W  +   
Sbjct: 65  RIVTCGTDRN-AYVWTLKGRT 84

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 15/174 (8%), Positives = 43/174 (24%), Gaps = 9/174 (5%)

Query: 132 HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP 191
             +          +      ++V   S + ++ L +   K  +         + +     
Sbjct: 194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 253

Query: 192 ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251
              +VA G  D    +         ++F   +     +       +    +         
Sbjct: 254 ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 312

Query: 252 WNLEKRRLQSVIREAHDNAIISLHFFANEP----VLMSASADNSIKMWIFDTTD 301
                  L S     H N++  +   +          +   D  + +W   + +
Sbjct: 313 SAAAGAGLDS----LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 42/290 (14%), Positives = 81/290 (27%), Gaps = 29/290 (10%)

Query: 55  LPKKIRALASYRDYTFAAYGNHIAVVK-------RAHQVATWSRHSAKVNLLLLF--GEH 105
           L + I   A  +D T  A   +   V        +  QV     H+ +V  +        
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165
           I++   D N ++W  KG       V               +   +               
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT----- 220
                    +  K   S++ S    P   ++A G  D K  + +    E           
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 221 ------------HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD 268
                        S  G V  + FS++G   +A  +    + + + +K+   + +     
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETL 244

Query: 269 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318
              +    F  E  L++A  D    ++ +D+  G                
Sbjct: 245 P--LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 292

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (219), Expect = 1e-19
 Identities = 28/359 (7%), Positives = 91/359 (25%), Gaps = 38/359 (10%)

Query: 230 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 289
              ++DGQ          +I       R  + +    H   + ++        + +    
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPG--IPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-K 71

Query: 290 NSIKMW-IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
             +K+W I    +  P                +   +G  ++  G+     ++ +     
Sbjct: 72  GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131

Query: 349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408
             +                              A        +  +    +  +      
Sbjct: 132 RIKAELTS------------------------SAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER 468
             +  + ++R    +        IS  G     G     +  ++           +  + 
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD---------LREGRQL 218

Query: 469 SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG 528
             +    ++  +    T   +       +++V      D          ++ + +     
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278

Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587
              +   D ++  +       + +    +  +     S D K++++   D    +++VI
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 7e-12
 Identities = 45/355 (12%), Positives = 91/355 (25%), Gaps = 36/355 (10%)

Query: 273 SLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
           S H  A+ +   +    D  I   I                H      +      RH+ +
Sbjct: 14  SFHVTADGQMQPVPFPPDALIGPGIPRH-----ARQINTLNHGEVVCAVTISNPTRHVYT 68

Query: 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391
            G     +++ +        +SQ     R                           ++  
Sbjct: 69  GG-KGCVKVWDISHPGNKSPVSQLDCLNR--------------------------DNYIR 101

Query: 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451
                 D     +   +   L    L        A    +  AC   A+   +       
Sbjct: 102 SCKLLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160

Query: 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 511
           +  +      +     R    H      +   +  T + + G    ++ WD +      +
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220

Query: 512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 571
            +    +  + Y    G    V  +        V      +   H   +    F+  GKW
Sbjct: 221 HDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW 279

Query: 572 LLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
            +S+G D  L  W       I       S+ +  +S +   + T   D+    ++
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK-ATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 6e-09
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 7/239 (2%)

Query: 59  IRALASYRDYTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIW 118
           IR+     D      G   + +      A   R  A++         +         F  
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159

Query: 119 AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS--LQLWNISTKKKLYE 176
              G            +      T         N        G           + +  +
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236
              + S I S    P  + +AVG     + V +V   ++     H     V +L F+  G
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC--VLSLKFAYCG 277

Query: 237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
           +    S     +++ W         + +    ++++S     ++  +++ S D    ++
Sbjct: 278 K-WFVSTGKDNLLNAWRTPYGAS--IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 6e-06
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVV 196
           +    +            +   ++  L  W       +++ K   SS+ SC  S     +
Sbjct: 265 ESCVLSLKFAYCG--KWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISVDDKYI 321

Query: 197 AVGCSDGKIHVHNVRY 212
             G  D K  V+ V Y
Sbjct: 322 VTGSGDKKATVYEVIY 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.4 bits (217), Expect = 2e-19
 Identities = 43/354 (12%), Positives = 95/354 (26%), Gaps = 49/354 (13%)

Query: 263 IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322
           I +A  + I  +    ++ +L+  S D S+ ++ FD    +  LL+    +  P LC  F
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNF 64

Query: 323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382
             N    +  G  +   L   +    S +    +                        C 
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN------------------EANLGICR 106

Query: 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 442
             +  D   +        +    R     +               K  T+    +  ++G
Sbjct: 107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166

Query: 443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502
                ++ F L         ++     +                     +   G + V  
Sbjct: 167 MNNSQVQWFRLPLCEDDNGTIEE----SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222

Query: 503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 562
           F  +          +                              R+  K       +  
Sbjct: 223 FDDQGDDYNSSKRFAFRCH--------------------------RLNLKDTNLAYPVNS 256

Query: 563 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATA 616
             FS   K+L ++G DG +  W++   ++I         + + ++ + ++L  A
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA 310

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 4e-09
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ----IDAIHVDVSIT 602
           +++V+  +   D I+D         LL +  DGSL ++   +  +    + ++     + 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 603 ALSLSPNMDVLATAHVDQNGVYLWVNRCMF 632
             +   N D+       Q  +         
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 6e-07
 Identities = 40/331 (12%), Positives = 92/331 (27%), Gaps = 20/331 (6%)

Query: 183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM--RGAVTALAFSSDGQPLL 240
            IS     P+  ++ +   DG + V+      + V    S+  +  +    F  +    +
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300
             G   G I   +L        +     N  I       +  L++AS D  I++      
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 301 DGDPRLLRFRSGH--SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358
                 ++  + +             N   ++    +   + F +   +          +
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN--GTIEES 190

Query: 359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 418
               +++      K +   A    + R              +        + +  +    
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250

Query: 419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478
             P N     +   S    F     + G I  +NLQ+           +  N+A   E  
Sbjct: 251 AYPVN-----SIEFSPRHKFLYTAGSDGIISCWNLQTR---------KKIKNFAKFNEDS 296

Query: 479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLK 509
            V    ++ ++  A      K      + ++
Sbjct: 297 VVKIACSDNILCLATSDDTFKTNAAIDQTIE 327

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 30/336 (8%), Positives = 78/336 (23%), Gaps = 22/336 (6%)

Query: 146 HPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK---GWGSSISSCVSSPALDVVAVGCSD 202
            P    + +++ S +GSL ++    + K  +      +   +  C      D+     + 
Sbjct: 20  IPSK--SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77

Query: 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV 262
               +              +    +        G   L + +  G+I + +        +
Sbjct: 78  QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI 137

Query: 263 IREAHDNAIISLHFFANEPVLMS-----ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317
             +  ++    +          S        ++ ++ +     + D   +          
Sbjct: 138 AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR 197

Query: 318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377
                         +  D    +            S+R   +  R              I
Sbjct: 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257

Query: 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437
            F            + T   D      W LQ        ++   +         I+   N
Sbjct: 258 EFSP------RHKFLYTAGSD-GIISCWNLQTR----KKIKNFAKFNEDS-VVKIACSDN 305

Query: 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473
              L T+    +           +   +    +Y +
Sbjct: 306 ILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYEN 341

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 14/119 (11%)

Query: 103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL----------DDKFTPTCI-MHPDTYL 151
            E      IDG + +  F    ++                   +  +    I   P    
Sbjct: 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF 265

Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV 210
             +     +G +  WN+ T+KK+  F    +  S    + + +++ +  SD     +  
Sbjct: 266 --LYTAGSDGIISCWNLQTRKKIKNFAK-FNEDSVVKIACSDNILCLATSDDTFKTNAA 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 82.1 bits (201), Expect = 3e-17
 Identities = 23/382 (6%), Positives = 76/382 (19%), Gaps = 49/382 (12%)

Query: 230 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-EPVLMSASA 288
            A  +  +  +        + + ++    +             +     +     +  + 
Sbjct: 2   PALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 289 DNSIKMWIFD--TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 346
              I     D         L                  +G+ + +            +  
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406
               E+        A+ ++                 ++      +  + ++     Y   
Sbjct: 121 PPRLEVFSTADGLEAKPVRT-----------FPMPRQVYLMRAADDGSLYVAGPDIYKMD 169

Query: 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 466
           ++       +           +    +    +     +                      
Sbjct: 170 VKTGKYTVAL-----PLRNWNRKGYSAPDVLYFWPHQSPRHE------------------ 206

Query: 467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHR 525
                  +                +A         D K G+     +     L       
Sbjct: 207 ------FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS 260

Query: 526 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
                        +  +D+   ++++             F + G  L   G    L +++
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 319

Query: 586 VILARQIDAIHV---DVSITAL 604
                ++  I +   D+S T  
Sbjct: 320 PDTLEKVKNIKLPGGDMSTTTP 341

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 77.9 bits (190), Expect = 7e-16
 Identities = 32/338 (9%), Positives = 79/338 (23%), Gaps = 22/338 (6%)

Query: 190 SPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249
               + + V      +HV +V  D    +     +        + D +         G I
Sbjct: 5   KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI 64

Query: 250 SIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 304
              +L+  +                ++ S     +   + +           +       
Sbjct: 65  YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL 124

Query: 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAFRLFSVIQDQQSRELSQRHVAKR 360
            +     G  A P+         +++ A  D     A      +  +  +      +   
Sbjct: 125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW---RLQNFVLGEHIL 417
            RK     + L   P  +                   D A A +       +   G+   
Sbjct: 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT 244

Query: 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477
           +   +          S       +      + +++L+                   +   
Sbjct: 245 QEFADLTELYFTGLRSPKDPN-QIYGVLNRLAKYDLKQR---------KLIKAANLDHTY 294

Query: 478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG 515
             VA D     +   G   D+ V++    +     ++ 
Sbjct: 295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.1 bits (92), Expect = 9e-04
 Identities = 9/95 (9%), Positives = 28/95 (29%), Gaps = 2/95 (2%)

Query: 565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV--SITALSLSPNMDVLATAHVDQNG 622
                ++++ +    +L + DV       +  +          ++P+       +     
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 623 VYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSS 657
           +Y        +      S   G+   S+   ++S 
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP 98

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 78.0 bits (190), Expect = 7e-16
 Identities = 44/379 (11%), Positives = 93/379 (24%), Gaps = 39/379 (10%)

Query: 229 ALAFS-SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 287
           A  FS  DG  L+A   S G   I ++       V++      I  +    +  V     
Sbjct: 7   AEDFSPLDGD-LIAF-VSRGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGDTKVAFIHG 61

Query: 288 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 347
                 + I+D   G                  +F  N  ++ + G DR  +   V  D+
Sbjct: 62  TREGDFLGIYDYRTGKAE---------------KFEENLGNVFAMGVDRNGKFAVVANDR 106

Query: 348 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407
                      K     + +E  +    +              +  T        +V+ +
Sbjct: 107 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 166

Query: 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE 467
           +        +       +   A    A        +        +     +    +    
Sbjct: 167 EG-----RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL-NFSFEVVSKP 220

Query: 468 RSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVN 527
                  G          +    +  Y  +         ++          ++      +
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280

Query: 528 G--------LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579
                          +  V+  +DV      RK     + +TD   S D K ++    DG
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDG 336

Query: 580 SLRIWDVILARQIDAIHVD 598
            +  + +        +  D
Sbjct: 337 KIYTFPLEKPEDERTVETD 355

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 8e-15
 Identities = 54/332 (16%), Positives = 103/332 (31%), Gaps = 59/332 (17%)

Query: 264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323
           R      +  L +  ++  ++S   DN+IK+W  D         R  +GH+   LC+++ 
Sbjct: 11  RSETSKGVYCLQY--DDQKIVSGLRDNTIKIW--DKNTL--ECKRILTGHTGSVLCLQYD 64

Query: 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 383
                  S+         +  +   +       V        M     K + +  +D A 
Sbjct: 65  ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443
             +     V+  H        +                                + V  +
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDF-----------------------------DDKYIVSAS 155

Query: 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-GDIKVWD 502
               I+ +N  +                  NG   G+AC      ++ +G     I++WD
Sbjct: 156 GDRTIKVWNTSTC-----------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD 204

Query: 503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---------LRMVRKF 553
            +        E G   +       N  + + A D  I+++D+VA            +R  
Sbjct: 205 IECGACLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 263

Query: 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
             H+ R+    F  D   ++SS  D ++ IWD
Sbjct: 264 VEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 158 SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV 217
           S + ++++WN ST + +    G    I+         +V  G SD  I + ++     L 
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACL- 211

Query: 218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--------EAHDN 269
                + G    +         + SGA  G I +W+L                    H  
Sbjct: 212 ---RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 268

Query: 270 AIISLHFFANEPVLMSASADNSIKMW 295
            +  L F  +E  ++S+S D++I +W
Sbjct: 269 RVFRLQF--DEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 47/295 (15%), Positives = 94/295 (31%), Gaps = 47/295 (15%)

Query: 84  HQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKG------IEENLAPVGHVKLDD 137
            ++   S  S  V  L    + I+S   D  + IW          +  +   V  ++ D+
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 138 KFTPTCIMHPDTYLNKVIVGSQ--------------------------EGSLQLWNISTK 171
           +   T        +  V  G                            + S+ +W++++ 
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFTHSMRGAVTAL 230
             +   +      ++       D   V  S D  I V N    E + T  +  +  +  L
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL-NGHKRGIACL 184

Query: 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN 290
            +      L+ SG+S   I +W++E       +R    +  +      +   ++S + D 
Sbjct: 185 QYRDR---LVVSGSSDNTIRLWDIECGAC---LRVLEGHEELVRCIRFDNKRIVSGAYDG 238

Query: 291 SIKMWIFDT-----TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340
            IK+W                LR    HS     ++F  +   I+S+  D    +
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 46/330 (13%), Positives = 103/330 (31%), Gaps = 51/330 (15%)

Query: 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364
           + +  RS  S    C+++  + + I+S  +D   +++     +  R L+    +    + 
Sbjct: 6   QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424
                              I       V    ++T +     + +     H+        
Sbjct: 64  DE--------------RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMV 109

Query: 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS 484
           T  K  +I               +      + I+    L     +    + +   +   S
Sbjct: 110 TCSKDRSI--------------AVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS 155

Query: 485 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 544
            +           IKVW+    +       G           + L+ + + D  IRL+D+
Sbjct: 156 GD---------RTIKVWNTSTCEFVRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDI 205

Query: 545 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITAL 604
                +R  EGH + +    F      ++S   DG +++WD++ A    A    + +  L
Sbjct: 206 ECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 263

Query: 605 --------SLSPNMDVLATAHVDQNGVYLW 626
                    L  +   + ++  D   + +W
Sbjct: 264 VEHSGRVFRLQFDEFQIVSSSHDDT-ILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 7e-06
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC 200
              I         V+ GS + +++LW+I     L   +G    +           +  G 
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGA 235

Query: 201 SDGKIHVHNVRYDEELVTFTHSM--------RGAVTALAFSSDGQPLLASGASSGVISIW 252
            DGKI V ++    +      ++         G V  L F       + S +    I IW
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIW 292

Query: 253 N 253
           +
Sbjct: 293 D 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 4e-05
 Identities = 30/205 (14%), Positives = 70/205 (34%), Gaps = 12/205 (5%)

Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR 211
            K++ G ++ ++++W+ +T +      G   S+        + +     S  ++   N  
Sbjct: 26  QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG 85

Query: 212 YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI 271
                +         +                     I++W++      ++ R    +  
Sbjct: 86  EMLNTLIHHCEAVLHLRFNNGMMVTCS------KDRSIAVWDMASPTDITLRRVLVGHRA 139

Query: 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
                  ++  ++SAS D +IK+W   T       +R  +GH     C+++    R ++S
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTST----CEFVRTLNGHKRGIACLQY--RDRLVVS 193

Query: 332 AGQDRAFRLFSVIQDQQSRELSQRH 356
              D   RL+ +      R L    
Sbjct: 194 GSSDNTIRLWDIECGACLRVLEGHE 218

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
           L+ +      +  +   C   D + ++S   D +++IWD 
Sbjct: 5   LQRIHCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDK 42

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.9 bits (174), Expect = 4e-14
 Identities = 32/298 (10%), Positives = 80/298 (26%), Gaps = 19/298 (6%)

Query: 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH-------- 356
            + + R GH+     +   A+G+ + SA  +     + +     +R     H        
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 357 ------VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410
                 +   +    +K        V +      +       +    D   A     ++ 
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN 470
            +  H                +S    F  +G     +  + L           +     
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 471 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLL 530
            +                  S          +F+     S       +  + +   N  L
Sbjct: 183 TSVAFSNN---GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 531 ATVADDLVIRLFDVV--ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
           AT + D  + ++++   +   +     H     +     +   ++S+G D +++ W+V
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 31/326 (9%), Positives = 73/326 (22%), Gaps = 37/326 (11%)

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236
             G   +I++  SS     +    ++G I+  ++        F       +T +  +S  
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK- 66

Query: 237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296
             L        +  +         S       ++       + +  +  A+    I ++ 
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
                  P          +              +   +     +  V       E++   
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416
                                                    D ++  +            
Sbjct: 187 ------------------------------FSNNGAFLVATDQSRKVIPYSVANNFELAH 216

Query: 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476
                 +   V   + S        G+    +  +N+         +        AH   
Sbjct: 217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK------GAHAMS 270

Query: 477 VVGVACDSTNTLMISAGYHGDIKVWD 502
            V        T ++SAG   +IK W+
Sbjct: 271 SVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 5e-05
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 275 HFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ 334
            +  +   L + S DNS+ +W  +        +  +  H+   +    + N   I+SAGQ
Sbjct: 231 SWSPDNVRLATGSLDNSVIVW--NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288

Query: 335 DRAFRLFSV 343
           D   + ++V
Sbjct: 289 DSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 2/69 (2%)

Query: 187 CVSSPALDVVAVGCSDGKIHVHNVRYDEEL-VTFTHSMRGAVTALAFSSDGQPLLASGAS 245
              SP    +A G  D  + V N+    +  +    +   +        +    + S   
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQ 288

Query: 246 SGVISIWNL 254
              I  WN+
Sbjct: 289 DSNIKFWNV 297

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 1e-13
 Identities = 43/329 (13%), Positives = 111/329 (33%), Gaps = 23/329 (6%)

Query: 11  GYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALA---SYRD 67
            ++ + + F   R+     V+ S      +++      +         + +     +   
Sbjct: 17  DHVITCLQFCGNRI-----VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII 71

Query: 68  YTFAAYGNHIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENL 127
                    +   +    + T   H++ V  + L  + ++S   D  + +W  +      
Sbjct: 72  SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE------ 125

Query: 128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSC 187
              G            +        +V+ G+ +  +++W+  T+  L+  +G  + + S 
Sbjct: 126 --TGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 183

Query: 188 VSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247
                   V  G  D  I V +V     + T T   +   + +    +   +L SG +  
Sbjct: 184 QFDG--IHVVSGSLDTSIRVWDVETGNCIHTLTG-HQSLTSGMELKDN---ILVSGNADS 237

Query: 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307
            + IW+++  +    ++  + +         N+  ++++S D ++K+W   T +    L+
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297

Query: 308 RFRS-GHSAPPLCIRFYANGRHILSAGQD 335
              S G       IR            ++
Sbjct: 298 TLESGGSGGVVWRIRASNTKLVCAVGSRN 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 8e-13
 Identities = 34/335 (10%), Positives = 95/335 (28%), Gaps = 12/335 (3%)

Query: 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 361
           G+ +  +   GH    +       G  I+S   D   +++S +  +  R L        +
Sbjct: 4   GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 62

Query: 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421
            +++                          +          ++   +             
Sbjct: 63  SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122

Query: 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 481
           +  T      +             G          + +    +     +          +
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 182

Query: 482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRL 541
                  ++S      I+VWD +  +         SL   +  + + +L +   D  +++
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKI 241

Query: 542 FDVVALRMVRKFEGHTDRI-TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
           +D+   + ++  +G         C   +  ++++S  DG++++WD+     I  +    S
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 301

Query: 601 ------ITALSLSPNMDVLATAHVD---QNGVYLW 626
                 +  +  S    V A    +   +  + + 
Sbjct: 302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 50/425 (11%), Positives = 113/425 (26%), Gaps = 93/425 (21%)

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMR 224
           W     K     KG    + +C+     + +  G  D  + V +    + L T   H+  
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT-- 57

Query: 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 284
           G V +     +         S        +        I   + +         +E  ++
Sbjct: 58  GGVWSSQMRDNIII------SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111

Query: 285 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344
           S S D ++++W  +T      L                  +GR ++S   D   +++   
Sbjct: 112 SGSRDATLRVWDIETGQCLHVL------MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 165

Query: 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 404
            +     L                           +     + D  +VV+  +DT    V
Sbjct: 166 TETCLHTLQGHT-----------------------NRVYSLQFDGIHVVSGSLDT-SIRV 201

Query: 405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 464
           W ++      + +     + +      +    N  V G A   ++ +++++G    +   
Sbjct: 202 WDVETG----NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQG 255

Query: 465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYH 524
            ++  +                  +I++   G +K+WD K  +                 
Sbjct: 256 PNKHQSAVTC-------LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL--------- 299

Query: 525 RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGS---- 580
                                      +  G    +     S           +G+    
Sbjct: 300 ---------------------------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 332

Query: 581 LRIWD 585
           L + D
Sbjct: 333 LLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 16/150 (10%)

Query: 76  HIAVVKRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL 135
            +  V+  + + T + H +  + + L    ++S + D  + IW  K  +           
Sbjct: 200 RVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCL-----QTLQ 254

Query: 136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-----GWGSSISSCVSS 190
                 + +       N VI  S +G+++LW++ T + +         G G  +    +S
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 191 PALDVVAVGCSDG----KIHVHNVRYDEEL 216
               V AVG  +G    K+ V +  +D ++
Sbjct: 315 NTKLVCAVGSRNGTEETKLLVLD--FDVDM 342

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.3 bits (170), Expect = 2e-13
 Identities = 46/375 (12%), Positives = 114/375 (30%), Gaps = 25/375 (6%)

Query: 212 YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI 271
           +  +  T    M   +T L F  +    + +GA   +I +++   ++    +   HD  +
Sbjct: 1   FVPQRTTLRGHMTSVITCLQFEDN---YVITGADDKMIRVYDSINKKFLLQL-SGHDGGV 56

Query: 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
            +L + A+  +L+S S D ++++W                  +   L I  Y N ++I++
Sbjct: 57  WALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNIKYIVT 113

Query: 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391
             +D    ++ + ++    +  + H          +                        
Sbjct: 114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI 173

Query: 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451
           VV+   D                 ++         +   +      ++ +          
Sbjct: 174 VVSGSYDN---------------TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 218

Query: 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 511
                  R   L+  E          +      ++  ++SA   G I+ WD      K  
Sbjct: 219 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS 278

Query: 512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGK 570
           +    +L  I    V+  +     +    ++++ + ++V        D+I    F     
Sbjct: 279 YHHT-NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL 337

Query: 571 WLLSSGMDGSLRIWD 585
            + +   DG   +  
Sbjct: 338 -VAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.3 bits (144), Expect = 3e-10
 Identities = 35/362 (9%), Positives = 95/362 (26%), Gaps = 26/362 (7%)

Query: 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS 201
           TC+   D Y+   I G+ +  +++++   KK L +  G    + +   +    ++  G +
Sbjct: 17  TCLQFEDNYV---ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST 72

Query: 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261
           D  + V +++       F                    + +G+    + +W L K   +S
Sbjct: 73  DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK---ES 129

Query: 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 321
            + +  +     L F   E               +   +     ++     ++     + 
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 189

Query: 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381
                  +          ++   + +         +     +                  
Sbjct: 190 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-----------MYT 238

Query: 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 441
            +        +         A               R    + T + A T     +  ++
Sbjct: 239 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 298

Query: 442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501
             +      +NL+SG    + +            ++  V      TL+ +    G   + 
Sbjct: 299 SGSENQFNIYNLRSGKLVHANIL-------KDADQIWSVNF-KGKTLVAAVEKDGQSFLE 350

Query: 502 DF 503
             
Sbjct: 351 IL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 2e-08
 Identities = 42/363 (11%), Positives = 108/363 (29%), Gaps = 20/363 (5%)

Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324
             H  ++I+      +  +++ + D  I+++  D+ +   + L   SGH      +++ A
Sbjct: 9   RGHMTSVITC-LQFEDNYVITGADDKMIRVY--DSINK--KFLLQLSGHDGGVWALKY-A 62

Query: 325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384
           +G  ++S   DR  R++ + +   +      +   R   +   +       V       +
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN--IKYIVTGSRDNTL 120

Query: 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 444
                    +   D  + + + L      E+               T+S  GN  V G+ 
Sbjct: 121 HVWKL-PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179

Query: 445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504
              +  +++            ++R                            D  +  + 
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS----------ASMDTTIRIWD 229

Query: 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC 564
             + +  + +      +   R++      A                +    HT+      
Sbjct: 230 LENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT 289

Query: 565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVY 624
           F      +L SG +    I+++   + + A  +  +    S++     L  A       +
Sbjct: 290 FYVSDN-ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSF 348

Query: 625 LWV 627
           L +
Sbjct: 349 LEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 8e-07
 Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225
                     +F    +++S+  +    D + V  S+ + +++N+R  + +         
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLE 255
            + ++ F      L+A+    G   +  L+
Sbjct: 326 QIWSVNFKGKT--LVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 9e-07
 Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 3/130 (2%)

Query: 553 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSITALSLSPNMD 611
             GH   +   C   +  ++++   D  +R++D I  + +  +   D  + AL  +    
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G 65

Query: 612 VLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDV 671
           +L +   D+      + +   +      +       +         V G +D       +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 672 HRTDRVPKDS 681
            +   VP   
Sbjct: 126 PKESSVPDHG 135

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 21/161 (13%), Positives = 56/161 (34%), Gaps = 3/161 (1%)

Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT 532
           H   V+       +  +I+      I+V+D   +    +       V  + +   G+L +
Sbjct: 11  HMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 533 VADDLVIRLFDV--VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590
            + D  +R++D+       V +    T R  D    ++ K++++   D +L +W +    
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 591 QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM 631
            +     +     +  +P  +      +  +   +      
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.0 bits (164), Expect = 1e-12
 Identities = 33/323 (10%), Positives = 92/323 (28%), Gaps = 20/323 (6%)

Query: 269 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF--YANG 326
           N    L +      +      ++    + D     P +++F    S+    ++F      
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386
           +++ S  +     ++    D++S  +     ++         +       I++D    R 
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD-------ISWDFEGRRL 130

Query: 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446
                                   V G            +    +++   + +V+   G 
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190

Query: 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506
             +         +          +            +   T+                 +
Sbjct: 191 PFKFSASDRTHHKQGSFVRDVEFSPDS--------GEFVITVGSDRKISCFDGKSGEFLK 242

Query: 507 DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF--- 563
            ++   E     +  +    +   ATV  D  IR++DV   + V+K+     ++ +    
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302

Query: 564 CFSEDGKWLLSSGMDGSLRIWDV 586
             +     ++S  +DG+L  +++
Sbjct: 303 VVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.4 bits (152), Expect = 3e-11
 Identities = 26/333 (7%), Positives = 71/333 (21%), Gaps = 36/333 (10%)

Query: 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV--IREAHDNAIISLHF--FAN 279
           R   T L++      +      S  +   +    ++  V        + + ++ F     
Sbjct: 17  RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76

Query: 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRF----RSGHSAPPLCIRFYANGRHILSAGQD 335
              L S      + +W +        +           + P   I +   GR +   G+ 
Sbjct: 77  SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136

Query: 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 395
           R      +  D  +                                ++            
Sbjct: 137 RDNFGVFISWDSGNSLGEVSG------------------------HSQRINACHLKQSRP 172

Query: 396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 455
                      +  +                  +       +               +  
Sbjct: 173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 232

Query: 456 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG 515
              +          +       +       +    + G    I+VWD        +W + 
Sbjct: 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292

Query: 516 CSLVKI----VYHRVNGLLATVADDLVIRLFDV 544
              +      V    NG + +++ D  +  +++
Sbjct: 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 6e-06
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 196 VAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254
            A   +D  I V +V   + +  +T    +     +   + G   + S +  G ++ + L
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 7/71 (9%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 143 CIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISS---CVSSPALDVVAVG 199
                     K      + ++++W+++T K + ++      + +    V +     +   
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314

Query: 200 CSDGKIHVHNV 210
             DG ++ + +
Sbjct: 315 SLDGTLNFYEL 325

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 67.6 bits (163), Expect = 1e-12
 Identities = 43/322 (13%), Positives = 84/322 (26%), Gaps = 31/322 (9%)

Query: 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 283
           RG    L  +  G   +     + V     +       +  E H +         +    
Sbjct: 17  RGTAVVLGNTPAGD-KIQYCNGTSVY-TVPVGSLTDTEIYTE-HSHQTTVAKTSPSGYYC 73

Query: 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
            S     ++++W          L       S P   I + +  + I + G+ R       
Sbjct: 74  ASGDVHGNVRIWDTT--QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131

Query: 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403
           + D  +   +    A+    +  K          + D                      +
Sbjct: 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 191

Query: 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 463
           V                            +  G+        G I  +N   G   G + 
Sbjct: 192 VHS-----------------------VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF- 227

Query: 464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 523
           +     N AH+G V G+      T + SA     IK+W+     ++    VG  +     
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287

Query: 524 --HRVNGLLATVADDLVIRLFD 543
                   L +++ +  I   +
Sbjct: 288 GIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 62.6 bits (150), Expect = 5e-11
 Identities = 26/300 (8%), Positives = 70/300 (23%), Gaps = 26/300 (8%)

Query: 287 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 346
               S+      +           + HS      +   +G +  S       R++   Q 
Sbjct: 35  CNGTSVYTVPVGS----LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 90

Query: 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406
               + +    +   + +               +   I           H+         
Sbjct: 91  THILKTTIPVFSGPVKDISWD-----------SESKRIAAVGEGRERFGHVFLFDTGTSN 139

Query: 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS 466
                    +     +     +  + S     A+        +    +      S     
Sbjct: 140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 199

Query: 467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV 526
           + S +A  G    +   +                      D         S+  + +   
Sbjct: 200 DGSLFASTGGDGTIVLYNGVDG----------TKTGVFEDDSLKNVAHSGSVFGLTWSPD 249

Query: 527 NGLLATVADDLVIRLFDVVALRMVRKFEGHTD-RITDFCFSEDGKWLLSSGMDGSLRIWD 585
              +A+ + D  I++++V  L++ +     T             + L+S   +G +   +
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 7e-06
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
           V +        +       V     V +L     +  H+ + T    S  G +  S  + 
Sbjct: 21  VVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 579 GSLRIW 584
           G++RIW
Sbjct: 80  GNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225
                +    +      S+     SP    +A   +D  I + NV   +   T     R 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLE 255
               L      Q  L S +++G I+  N E
Sbjct: 283 EDQQLGIIWTKQ-ALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 3e-05
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSL 606
              K   H+  +    +S DG  + S+  D +++IW+V   +    I     +    L +
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289

Query: 607 SPNMDVLATAHVDQNGVYLW 626
                 L +   +   +   
Sbjct: 290 IWTKQALVSISANGF-INFV 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.8 bits (156), Expect = 1e-11
 Identities = 27/332 (8%), Positives = 75/332 (22%), Gaps = 11/332 (3%)

Query: 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD----RAF 338
           +++ +  + + +   DT       +   +     P+       GR   +           
Sbjct: 4   ILAPARPDKLVVI--DTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 398
            L +     +    +     K      +  +   L    +    E+   +         D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 458
                  +         +L    +              +            +       +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 518
           +   L +  +   +                     Y   +   D +  ++  R      +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
                              V+  FD+     +++             S DG  +   G  
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGAL 300

Query: 579 GSLRIWDVILARQIDAIHV----DVSITALSL 606
           G L  +D     +   + +     +S+ ++ L
Sbjct: 301 GDLAAYDAETLEKKGQVDLPGNASMSLASVRL 332

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.7 bits (148), Expect = 1e-10
 Identities = 34/333 (10%), Positives = 84/333 (25%), Gaps = 27/333 (8%)

Query: 194 DVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIW 252
           D +       K+ V +          T             +  G+   A+   S  +   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 253 NLE----KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT-------D 301
           +L       R+     E    ++       +   L    +   +++  F+         D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 361
            +    R           + +  +G  +   G+D        + D ++  L +    +  
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDL------HVMDPEAGTLVEDKPIQSW 175

Query: 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421
                 + ++            +    +            AY   L    L    +    
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235

Query: 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 481
                V   + +          A   +E F+L+           +             V 
Sbjct: 236 VRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN---------ASIKRVPLPHSYYSVN 286

Query: 482 CDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV 514
             +  + +   G  GD+  +D +  + K + ++
Sbjct: 287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 1e-11
 Identities = 53/398 (13%), Positives = 106/398 (26%), Gaps = 59/398 (14%)

Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH---------SA 315
           +AHD  I S+         +S S D  +K+W     D +    +  S             
Sbjct: 11  KAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE------- 368
                R       + +         + + ++ +++++    +      +K          
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 369 ----EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424
                 L  + V            +             +   L+        +       
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ----GTVESPMTPS 184

Query: 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS 484
               +  IS  G  A  G   G ++   L +      Y   S+ S   ++  +  V    
Sbjct: 185 QFATSVDISERGLIAT-GFNNGTVQISELSTLRPL--YNFESQHSMINNSNSIRSVKFSP 241

Query: 485 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 544
             +L+  A              +   R                                 
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSV-------------------------PT 276

Query: 545 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH-----VDV 599
            + +       H+  +    F++ G+ L S+G DG LR WDV    +I  ++     +++
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 336

Query: 600 SITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN 637
               L++  + D LA   V          R     D N
Sbjct: 337 EEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 374

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 46/318 (14%), Positives = 85/318 (26%), Gaps = 58/318 (18%)

Query: 92  HSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL-------DDKFTPTCI 144
           H A +  +       +S   DG + +W  K ++                          I
Sbjct: 13  HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72

Query: 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG---------------WGSSISSCVS 189
                 L  V   S  G L  + I+ + +  +                  W     +   
Sbjct: 73  ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132

Query: 190 SPALDVVAVGCSDGKIHVHNVRYDEEL-----------------VTFTHSMRGAVTALAF 232
                 +      G  ++       +                  V    +     T++  
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192

Query: 233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMSAS 287
           S  G  L+A+G ++G + I  L   R             + N+I S+ F     +L  A 
Sbjct: 193 SERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250

Query: 288 ADNSIKM------------WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335
             NS                         +       HS+  + + F  +G  + SAG D
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310

Query: 336 RAFRLFSVIQDQQSRELS 353
              R + V   ++   L+
Sbjct: 311 GKLRFWDVKTKERITTLN 328

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 45/409 (11%), Positives = 107/409 (26%), Gaps = 72/409 (17%)

Query: 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG----------- 225
            K   + I S  +            DG + V + +  +       S              
Sbjct: 10  GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRR---------LQSVIREAHDNAIISLHF 276
            + A+   +    L+A+ + SG +  + + +           L  +  +   ++  +L +
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 277 FANEP-----VLMSASADNSIKMWIFDTTDGDPRLLRFRS--------------GHSAPP 317
            A+        L++     +  +W F     +   L                    S   
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377
             +     G  I +   +   ++  +   +       +H            +      ++
Sbjct: 188 TSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437
           A         +    +T +       +  L               + + V + + +  G 
Sbjct: 247 AIAHDS----NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302

Query: 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV----VGVACDSTNTLMISAG 493
                   G +  +++++     +           H  ++      +A D     +   G
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTL--------NMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF 542
                 V+D K      R  +G          +N  L  V  D  IR F
Sbjct: 355 ------VFDVKFLKKGWRSGMG--------ADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 8e-06
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 17/91 (18%)

Query: 550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV--------------ILARQIDAI 595
               + H   I          + +S   DG L++WD                   +    
Sbjct: 7   ANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 596 HVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
           HVDV       +  + ++AT     + +  +
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGD-LLFY 94

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.7 bits (150), Expect = 4e-11
 Identities = 37/292 (12%), Positives = 79/292 (27%), Gaps = 11/292 (3%)

Query: 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA-KR 360
           G   +L+  SGH+     +        ++S   D     +S     Q        +   +
Sbjct: 1   GHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK 56

Query: 361 ARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420
           A++      +  LK           +    +               L         +   
Sbjct: 57  AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 116

Query: 421 PENPTAVKACTIS----ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476
               +   A ++S    A G           +    +   +        S  S       
Sbjct: 117 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 176

Query: 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 536
           +          L            W F+   + +                  L+AT + D
Sbjct: 177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 236

Query: 537 LVIRLFDVV-ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587
             I ++ V   +++++    H D + +  +      L+SSG D  ++ W+V+
Sbjct: 237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 7e-06
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG 225
                  K+       +   +       D+VA G  D  I +++V+   +++   ++ + 
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 226 AVTALAFSSDGQPLLASGASSGVISIWN 253
            V  L + +     L S  +   I  WN
Sbjct: 260 GVNNLLWETPST--LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 200 CSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259
               ++      +    +           A     +   + A+G+    I I+++++   
Sbjct: 191 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV-ATGSLDTNIFIYSVKRPMK 249

Query: 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
                 AH + + +L  +     L+S+ AD  IK W
Sbjct: 250 IIKALNAHKDGVNNLL-WETPSTLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 34/333 (10%), Positives = 91/333 (27%), Gaps = 49/333 (14%)

Query: 170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTA 229
             + L    G    I++   +P    +  G  DG+I   +        +        + +
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS------SMHQDHSNLIVS 51

Query: 230 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 289
           L  S   +    S   +  ++     +   Q  +  A+++   ++    ++ +++ +   
Sbjct: 52  LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 111

Query: 290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 349
           + IK    ++      L +                    +  +   +             
Sbjct: 112 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP------ 165

Query: 350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409
                                      I+   +E        +    +   Q+   +   
Sbjct: 166 -------------------------SYISISPSETYIAAGDVMGKILLYDLQSREVKTSR 200

Query: 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469
           +      +      P    A       +    G+    I  ++++  +     L+     
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN----- 255

Query: 470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502
             AH   V  +  ++ +TL +S+G    IK W+
Sbjct: 256 --AHKDGVNNLLWETPSTL-VSSGADACIKRWN 285

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 54/401 (13%), Positives = 100/401 (24%), Gaps = 68/401 (16%)

Query: 227 VTALAFSSDGQPLL----ASGASSGVISIWNLEKRRLQSVIREAHDNAII-----SLHFF 277
               A + D + +     A  A+     + + E  R+  +I        +     S    
Sbjct: 4   RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAH 63

Query: 278 ANEPVLMSASADNSIKMWIFDTTDGDPR-----LLRFRSGHSAPPLCIRFYANGRHILSA 332
           A+      A  + +  + +FD     P          R      P       +G+ +L  
Sbjct: 64  ASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFY 123

Query: 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 392
               A  +  V  + ++                        + +   DC  I        
Sbjct: 124 QFSPAPAVGVVDLEGKAF----------------------KRMLDVPDCYHIFPTAPDTF 161

Query: 393 VTCHMDTAQAYVWRLQ-NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451
                D + A V           H     PE+   +     S      V  T  G I + 
Sbjct: 162 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQI 221

Query: 452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR 511
           +L SG ++         +  A                 ++     D        R     
Sbjct: 222 DLSSGDAK------FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR----- 270

Query: 512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW 571
                                      + + D      + KFE     I     S+D K 
Sbjct: 271 ----------------DEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKP 313

Query: 572 LL--SSGMDGSLRIWDVILARQIDAI-HVDVSITALSLSPN 609
           LL   S  D +L I D     ++ ++  +      ++ +  
Sbjct: 314 LLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (110), Expect = 6e-06
 Identities = 25/209 (11%), Positives = 44/209 (21%), Gaps = 22/209 (10%)

Query: 59  IRALASYRDYTFAAYGNHIAVV-KRAHQVATWSRHSAKVNLLLLFGEHILSIDIDGNMFI 117
           I   A    +     G+   V                      L      S      ++ 
Sbjct: 153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP 212

Query: 118 WAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF 177
                I +     G  K                      G + G  Q             
Sbjct: 213 TYTGKIHQIDLSSGDAKFLPAVEALTEAE-------RADGWRPGGWQQVAYHRALDRI-- 263

Query: 178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237
                     +     D      +   + V + +  E L  F       + ++  S D +
Sbjct: 264 ---------YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEK 312

Query: 238 PLL-ASGASSGVISIWNLEKRRLQSVIRE 265
           PLL A       + I + E       + +
Sbjct: 313 PLLYALSTGDKTLYIHDAESGEELRSVNQ 341

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (105), Expect = 3e-05
 Identities = 30/342 (8%), Positives = 85/342 (24%), Gaps = 43/342 (12%)

Query: 197 AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA---------SGASSG 247
           A   +  +  V +      +        G +     + DG  +            G  + 
Sbjct: 22  AHFAAVTQQFVIDGEAGRVIGMID---GGFLPNPVVADDGSFIAHASTVFSRIARGERTD 78

Query: 248 VISIWNLEKRRLQSVIREAHDNAII------SLHFFANEPVLMSASADNSIKMWIFDTTD 301
            + +++       + I        +            +   L+      +  + + D   
Sbjct: 79  YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 138

Query: 302 GD-----PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356
                       +    +AP        +G     A          +   +      +  
Sbjct: 139 KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP--EITHTEVFHPEDEFL 196

Query: 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416
           +   A   K        + V      +I + D  +     +   +A     +        
Sbjct: 197 INHPAYSQKAG------RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 250

Query: 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGE 476
            +    +    +   +    +     TA  ++   + ++G            + +    E
Sbjct: 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------ERLAKFEMGHE 301

Query: 477 VVGVAC--DSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG 515
           +  +    D    L   +     + + D + G +L+S  ++G
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 343

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.8 bits (131), Expect = 3e-08
 Identities = 26/208 (12%), Positives = 60/208 (28%), Gaps = 15/208 (7%)

Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213
            +     G + L + ST +        G ++     S +   + V   DGK+++ ++   
Sbjct: 35  SVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93

Query: 214 EELVTFTHSM----RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN 269
           E        +    R   T+     + +  +A         I + E    + +       
Sbjct: 94  EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153

Query: 270 AIISLHFFANEPVLMSASADNSI---------KMWIFDTTDGDPRLLRFRSGHSAPPLCI 320
                +        + AS              K+ + D TD +  L              
Sbjct: 154 YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-LKTTEISAERFLHDG 212

Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQ 348
               + R+ ++A   R   +    ++ +
Sbjct: 213 GLDGSHRYFITAANARNKLVVIDTKEGK 240

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 7/106 (6%)

Query: 527 NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
           N    T+ D   I L D     +    +     +     S  G++L   G DG + + D+
Sbjct: 32  NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDL 90

Query: 587 ILARQIDAIHVDVS------ITALSLSPNMDVLATAHVDQNGVYLW 626
            +        + +        T+                     + 
Sbjct: 91  WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 18/162 (11%), Positives = 42/162 (25%), Gaps = 18/162 (11%)

Query: 483 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF 542
           D  N   ++    G I + D    ++K+  + G ++           L  +  D  + + 
Sbjct: 29  DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMI 88

Query: 543 DVVALRM-----VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDVILARQID--- 593
           D+          ++         T      + K+ +  +       I D           
Sbjct: 89  DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148

Query: 594 ---------AIHVDVSITALSLSPNMDVLATAHVDQNGVYLW 626
                      H +  + A+  S           +   + L 
Sbjct: 149 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 190

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 0.002
 Identities = 39/394 (9%), Positives = 99/394 (25%), Gaps = 44/394 (11%)

Query: 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261
            G+I + +    E           AV     S+ G+  L      G +++ +L  +   +
Sbjct: 41  AGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTT 97

Query: 262 VIR----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317
           V          +   S      +   ++ +        I D    +P   + +S      
Sbjct: 98  VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQ-YVIMDGETLEP--KKIQSTRGMTY 154

Query: 318 LCIRFYANGRHI-LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376
               ++   R   + A   R   + +V +  +   +    +          E  L     
Sbjct: 155 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL---HD 211

Query: 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG 436
              D +         +   +       +   +  ++          +P           G
Sbjct: 212 GGLDGSHRYF-----ITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG 266

Query: 437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496
                   G               + +      +  +  +++     +     +    H 
Sbjct: 267 PVWATSHMGDD-----------SVALIGTDPEGHPDNAWKILDSF-PALGGGSLFIKTHP 314

Query: 497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556
           +     +   D     E   S    V+      +     D   +   +     + +    
Sbjct: 315 N---SQYLYVDATLNPEAEISGSVAVFDIKA--MTGDGSDPEFKTLPIAEWAGITE---G 366

Query: 557 TDRITDFCFSEDGKWLLSS-----GMDGSLRIWD 585
             R+    F++DG  +  S       + +L + D
Sbjct: 367 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 52.3 bits (124), Expect = 1e-07
 Identities = 21/194 (10%), Positives = 55/194 (28%), Gaps = 9/194 (4%)

Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213
            +     G + L +  +KK +      G ++     S +   + V   D +I + ++   
Sbjct: 35  SVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSASGRYLLVIGRDARIDMIDLWAK 93

Query: 214 EELVTFT----HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN 269
           E             R   ++     + +  +A        +I + E    + ++      
Sbjct: 94  EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153

Query: 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329
                +        + AS ++   +        +   +   +      L +        +
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIV----NVKETGKVLLVNYKDIDNLTVTSIGAAPFL 209

Query: 330 LSAGQDRAFRLFSV 343
              G D + R F  
Sbjct: 210 ADGGWDSSHRYFMT 223

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.9 bits (110), Expect = 9e-06
 Identities = 32/389 (8%), Positives = 95/389 (24%), Gaps = 47/389 (12%)

Query: 228 TALAFSSDGQPLLA-SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 286
                  D   L + +   +G I++ + + +++  VI      A+      A+   L+  
Sbjct: 22  KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVI--DTGYAVHISRMSASGRYLLVI 79

Query: 287 SADNSIKMWIFDTTDGDPRL-LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345
             D  I M      +      ++      +           R+ ++         F+++ 
Sbjct: 80  GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ--FAIMD 137

Query: 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405
            +                 +    E ++  +IA         +    +    +T +  + 
Sbjct: 138 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-------EHPEFIVNVKETGKVLLV 190

Query: 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS--------GI 457
             ++                        +   + +                        +
Sbjct: 191 NYKDIDNLTVTSIGAAPFLADG---GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 247

Query: 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS 517
            +  +        +   G V   +     ++ +      +   + +K   +      G  
Sbjct: 248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK--KVAELQGQGGG 305

Query: 518 LVKIVYHR-------VNGLLATVADDLVIRLFDVVALRMVRKFEGHTD---------RIT 561
            + I  H                     + +FD+  L    +     +         R+ 
Sbjct: 306 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV 365

Query: 562 DFCFSEDGKWLLSS-----GMDGSLRIWD 585
              +++ G  +  S         +L + D
Sbjct: 366 QPEYNKRGDEVWFSVWNGKNDSSALVVVD 394

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 15/189 (7%)

Query: 501 WDFKGRDLKSRWEVGCSLVKIVYHRVNG------LLATVADDLVIRLFDVVALRMVRKFE 554
           W     +++  W+V          ++N          T+ D   I L D  + ++V+  +
Sbjct: 2   WGMP--EMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID 59

Query: 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSL------SP 608
                +     S  G++LL  G D  + + D+          + + I A S+        
Sbjct: 60  TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 118

Query: 609 NMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQ 668
                           +     +           +         P V+++    +     
Sbjct: 119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 178

Query: 669 PDVHRTDRV 677
            +V  T +V
Sbjct: 179 VNVKETGKV 187

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 30/313 (9%), Positives = 92/313 (29%), Gaps = 15/313 (4%)

Query: 279 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRA 337
            + V +++     I +W  +  +G   L +           +    + R++    + +  
Sbjct: 3   KQTVYIASPESQQIHVWNLNH-EGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFR 60

Query: 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397
              + +  D  +   +       +      + + +   V +++   +      + +   +
Sbjct: 61  VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120

Query: 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457
                 +    +  +               + C  +   +  ++      +         
Sbjct: 121 VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE--GAG 178

Query: 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS 517
            R      +E+  Y  N        +S+  +      HG+I+         ++  +   +
Sbjct: 179 PRHMVFHPNEQYAYCVNE------LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA 232

Query: 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT---DRITDFCFSEDGKWLLS 574
               +      L A      +I +F V     V   EG      +   F     GK+L++
Sbjct: 233 ADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA 292

Query: 575 SGMD-GSLRIWDV 586
           +G     + ++++
Sbjct: 293 AGQKSHHISVYEI 305

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 47.1 bits (110), Expect = 6e-06
 Identities = 36/313 (11%), Positives = 72/313 (23%), Gaps = 17/313 (5%)

Query: 195 VVAVGCSDGKIHVHNVRYDEEL-VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253
           V        +IHV N+ ++  L +T    + G V  +  S D + L         +  + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 254 LE--KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 311
           +      L      A   ++  +        +   S +                ++    
Sbjct: 66  IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 125

Query: 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 371
           G            N    + A +     LF+V  D          V             +
Sbjct: 126 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE---GAGPRHM 182

Query: 372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431
              P   +           +V             +  + +           +        
Sbjct: 183 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242

Query: 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491
                +          I  F++    S  S                 G   D +   +I+
Sbjct: 243 HLYACDR-----TASLITVFSVSEDGSVLSKEGFQPTETQPR-----GFNVDHSGKYLIA 292

Query: 492 AGYHGD-IKVWDF 503
           AG     I V++ 
Sbjct: 293 AGQKSHHISVYEI 305

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 9/132 (6%), Positives = 29/132 (21%), Gaps = 6/132 (4%)

Query: 550 VRKFEGHTDRITDFCFSEDGKWLLSSGM-DGSLRIWDV----ILARQIDAIHVDVSITAL 604
           + +      ++     S D ++L      +  +  + +              +  S+T +
Sbjct: 29  LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHI 88

Query: 605 SLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDE 664
           S       +     +  G               +D         S  +   +        
Sbjct: 89  STDHQGQFVFVGSYNA-GNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL 147

Query: 665 NSSQPDVHRTDR 676
              +  +     
Sbjct: 148 KQDRICLFTVSD 159

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 46.4 bits (108), Expect = 7e-06
 Identities = 29/316 (9%), Positives = 76/316 (24%), Gaps = 41/316 (12%)

Query: 201 SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260
               I V +V  ++   T              S DG  +  + A S  +SI +     + 
Sbjct: 10  ESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI 67

Query: 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320
           + +        +++     +  + + ++     +     T      +         PL +
Sbjct: 68  ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT------VAGTVKTGKSPLGL 121

Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380
               +G+ +                       +             K     +    +  
Sbjct: 122 ALSPDGKKL--------------------YVTNNGDKTVSVINTVTKAVINTVSVGRSPK 161

Query: 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAV 440
              +        V      + + +  + N V+    +   P         T +   N   
Sbjct: 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK 221

Query: 441 LGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIK 499
                  I+    +              +      +  G+A       + ++  +   + 
Sbjct: 222 YFNTVSMIDTGTNK------------ITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVS 269

Query: 500 VWDFKGRDLKSRWEVG 515
           V D     + +   VG
Sbjct: 270 VIDTATNTITATMAVG 285

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	907
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.95
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.95
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.94
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.94
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.91
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.91
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.89
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.86
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.76
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.75
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.69
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.59
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.57
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.5
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.4
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.33
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.29
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.29
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.27
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.2
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.2
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.18
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.17
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.17
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.16
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.15
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.86
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.56
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.53
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.47
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.35
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.29
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.23
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.2
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.16
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.1
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.05
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.04
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.04
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.0
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.87
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.73
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.55
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.3
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.14
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.1
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.97
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.8
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.79
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.52
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.2
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.72
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.71

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-44  Score=292.02  Aligned_cols=286  Identities=13%  Similarity=0.213  Sum_probs=216.9

Q ss_pred             CCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCC-CEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECE
Q ss_conf             434683899995599999998399967999903799986-1247414889999689993499899999489977999802
Q 002564          266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP-RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       266 ~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (907)
                      .|...|.+++|+|++++|++++ |+.|++|++....... .......+|...|.+++|+|++++|++++.||.|++|++.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCC
T ss_conf             9999289999989999999997-998899773677633116876404889968999986799889886123321111111


Q ss_pred             ECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCC
Q ss_conf             02432142024566988510200221046833486402211345430289860996099999010110424320599999
Q 002564          345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP  424 (907)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~  424 (907)
                      .......                                                                  .....+.
T Consensus       128 ~~~~~~~------------------------------------------------------------------~~~~~~~  141 (337)
T d1gxra_         128 APTPRIK------------------------------------------------------------------AELTSSA  141 (337)
T ss_dssp             CC--EEE------------------------------------------------------------------EEEECSS
T ss_pred             CCCCCCC------------------------------------------------------------------CCCCCCC
T ss_conf             1111111------------------------------------------------------------------1111111


Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf             86499999679989999947991999968889510144066622356767757999995999989999567709999879
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK  504 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  504 (907)
                      ..+.+++++|++.++++++.++.+.+|++.++.......        .|...+.++++++++..+++++.|+.+++||+.
T Consensus       142 ~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~--------~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~  213 (337)
T d1gxra_         142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR  213 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             111111111111111111111111111111111111111--------111111101234443211223566553211111


Q ss_pred             CCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf             87612223318652699992079889999389839999923662689960599970038987899699999189819999
Q 002564          505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  584 (907)
Q Consensus       505 ~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iw  584 (907)
                      +++.+..+.+...+.+++|+|++.++++++.|+.+++||+.+.+.. ....|...|++++|+|++++|++++.|+.|++|
T Consensus       214 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iw  292 (337)
T d1gxra_         214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW  292 (337)
T ss_dssp             TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCEEECCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEECCCCCEEEEEECCCEEEEE
T ss_conf             1000002466661579997153030000002564211111111100-001245654169998999999999489969999


Q ss_pred             ECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCEEEEEEC
Q ss_conf             76977412676408725799977897637998736974999644
Q 002564          585 DVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       585 d~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~iW~~  628 (907)
                      |+.+++++..+.+..+|.+++|+|++++|++++.|+ .|++|++
T Consensus       293 d~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~-~I~vWdl  335 (337)
T d1gxra_         293 RTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK-KATVYEV  335 (337)
T ss_dssp             ETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTS-CEEEEEE
T ss_pred             ECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCC-EEEEEEE
T ss_conf             899997999926999879999927999999990899-6999977

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-43  Score=286.74  Aligned_cols=329  Identities=19%  Similarity=0.333  Sum_probs=177.8

Q ss_pred             EEEEEECCCCEEEEECCCCEE----EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEC------
Q ss_conf             999996688099996689919----9999289998799999699989999956994999991089148999406------
Q 002564          153 KVIVGSQEGSLQLWNISTKKK----LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS------  222 (907)
Q Consensus       153 ~l~~gs~dg~i~iwd~~~~~~----~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~------  222 (907)
                      ..+.+..++...+|+....+.    +....+|.+.|+|++|+|+|++||+|+ |+.|++|++.+++.+..+..+      
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~  108 (388)
T d1erja_          30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD  108 (388)
T ss_dssp             TTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred             CCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCC
T ss_conf             3224688970898688777620541076079999689999999999999994-994899981364057663166544324


Q ss_pred             -----------CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCC
Q ss_conf             -----------997789999801999979999499849999889860212341243468389999559999999839996
Q 002564          223 -----------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS  291 (907)
Q Consensus       223 -----------~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~  291 (907)
                                 +...|++++|+|+++ +|++|+.||.|++|+...++...... +|...|.++.+++++..+++++.++.
T Consensus       109 ~~~~~~~~~~~~~~~V~~l~~s~~~~-~l~s~~~dg~v~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~  186 (388)
T d1erja_         109 PENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRT  186 (388)
T ss_dssp             ----------CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCC-CCEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             43211101467789889999889998-01213444111121111111111111-11111111011111111112221015


Q ss_pred             EEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHC
Q ss_conf             79999037999861247414889999689993499899999489977999802024321420245669885102002210
Q 002564          292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL  371 (907)
Q Consensus       292 i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (907)
                      +++|+....    ........ .....++.+.+                                               
T Consensus       187 i~~~d~~~~----~~~~~~~~-~~~~~~~~~~~-----------------------------------------------  214 (388)
T d1erja_         187 VRIWDLRTG----QCSLTLSI-EDGVTTVAVSP-----------------------------------------------  214 (388)
T ss_dssp             EEEEETTTT----EEEEEEEC-SSCEEEEEECS-----------------------------------------------
T ss_pred             EEEEECCCC----CCCCCCCC-CCCCCCCCCCC-----------------------------------------------
T ss_conf             654101111----11000012-45442112368-----------------------------------------------


Q ss_pred             CCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf             46833486402211345430289860996099999010110424320599999864999996799899999479919999
Q 002564          372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF  451 (907)
Q Consensus       372 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~  451 (907)
                                                                                    ++++++++|+.+|.|++|
T Consensus       215 --------------------------------------------------------------~~~~~l~~~~~d~~i~i~  232 (388)
T d1erja_         215 --------------------------------------------------------------GDGKYIAAGSLDRAVRVW  232 (388)
T ss_dssp             --------------------------------------------------------------TTCCEEEEEETTSCEEEE
T ss_pred             --------------------------------------------------------------CCCCEEEEECCCCEEEEE
T ss_conf             --------------------------------------------------------------878758997389819996


Q ss_pred             ECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEE
Q ss_conf             68889510144066622356767757999995999989999567709999879876122233186526999920798899
Q 002564          452 NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA  531 (907)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la  531 (907)
                      +..++.....+.... ....+|...|.+++|+|+++++++++.||.+++||+............                
T Consensus       233 ~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------------  295 (388)
T d1erja_         233 DSETGFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP----------------  295 (388)
T ss_dssp             ETTTCCEEEEEC-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------------------------
T ss_pred             ECCCCCCCEEECCCC-CCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC----------------
T ss_conf             345573000102443-334577898789999799999999978992898751577643210134----------------


Q ss_pred             EEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCC-EEEEE-----
Q ss_conf             993898399999236626899605999700389878996999991898199997697741267640872-57999-----
Q 002564          532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALS-----  605 (907)
Q Consensus       532 ~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~l~-----  605 (907)
                                   ...........|...|++++|+|++++|++++.||.|++||+.+++++..+..|.. |.+++     
T Consensus       296 -------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~  362 (388)
T d1erja_         296 -------------NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS  362 (388)
T ss_dssp             ----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSC
T ss_pred             -------------CCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCC
T ss_conf             -------------4420011012455327899988999999999698979999999996999996889978999984674


Q ss_pred             -ECCCCCEEEEEEECCCEEEEEECC
Q ss_conf             -778976379987369749996445
Q 002564          606 -LSPNMDVLATAHVDQNGVYLWVNR  629 (907)
Q Consensus       606 -~spdg~~lat~~~d~~~i~iW~~~  629 (907)
                       |+|++.+||+++.|+ .|++|+++
T Consensus       363 ~~spd~~~l~s~s~Dg-~I~iW~~~  386 (388)
T d1erja_         363 SLGPEYNVFATGSGDC-KARIWKYK  386 (388)
T ss_dssp             TTCTTCEEEEEEETTS-EEEEEEEE
T ss_pred             CCCCCCCEEEEEECCC-EEEEEEEE
T ss_conf             2589999999991899-79997621

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-43  Score=289.32  Aligned_cols=287  Identities=15%  Similarity=0.275  Sum_probs=175.7

Q ss_pred             EEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE---EEEE-EECCCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf             19999928999879999969998999995699499999108914---8999-4069977899998019999799994998
Q 002564          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE---LVTF-THSMRGAVTALAFSSDGQPLLASGASSG  247 (907)
Q Consensus       172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~---~~~~-~~~~~~~v~~l~fs~dg~~~l~sg~~dg  247 (907)
                      +.++++ .|...|++++|+|++++|++|+ ||.|+|||+.++..   +... ...|.+.|.+++|+|+++ +|++|+.||
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~-~l~s~~~dg  119 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEAS  119 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSS
T ss_pred             EEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCC-EEEEEECCC
T ss_conf             499987-9999289999989999999997-9988997736776331168764048899689999867998-898861233


Q ss_pred             CEEEEECCCC--EEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECC
Q ss_conf             4999988986--02123412434683899995599999998399967999903799986124741488999968999349
Q 002564          248 VISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (907)
Q Consensus       248 ~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (907)
                      .|++||+...  +....+. .|...+..+.|+|++..+++++.|+.+++|++...    .......+|...+.+++|+++
T Consensus       120 ~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~----~~~~~~~~~~~~v~~l~~s~~  194 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             EEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTT
T ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCC
T ss_conf             2111111111111111111-11111111111111111111111111111111111----111111111111110123444


Q ss_pred             CCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEE
Q ss_conf             98999994899779998020243214202456698851020022104683348640221134543028986099609999
Q 002564          326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW  405 (907)
Q Consensus       326 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w  405 (907)
                      +..+++++.|+.+++|+                                                               
T Consensus       195 ~~~~~~~~~d~~v~i~d---------------------------------------------------------------  211 (337)
T d1gxra_         195 GTKLWTGGLDNTVRSWD---------------------------------------------------------------  211 (337)
T ss_dssp             SSEEEEEETTSEEEEEE---------------------------------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCC---------------------------------------------------------------
T ss_conf             32112235665532111---------------------------------------------------------------


Q ss_pred             EEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCC
Q ss_conf             90101104243205999998649999967998999994799199996888951014406662235676775799999599
Q 002564          406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST  485 (907)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  485 (907)
                                                                     +.++.....+         .|...|.+++|+|+
T Consensus       212 -----------------------------------------------~~~~~~~~~~---------~~~~~i~~l~~~~~  235 (337)
T d1gxra_         212 -----------------------------------------------LREGRQLQQH---------DFTSQIFSLGYCPT  235 (337)
T ss_dssp             -----------------------------------------------TTTTEEEEEE---------ECSSCEEEEEECTT
T ss_pred             -----------------------------------------------CCCCEEECCC---------CCCCCEEEEEECCC
T ss_conf             -----------------------------------------------1110000024---------66661579997153


Q ss_pred             CCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf             99899995677099998798761222331865269999207988999938983999992366268996059997003898
Q 002564          486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF  565 (907)
Q Consensus       486 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~f  565 (907)
                      ++++++++.|+.+++|++..++......+...+.+++|+|+++++++++.|+.|++||+.+++.+..+. |.+.|++++|
T Consensus       236 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~  314 (337)
T d1gxra_         236 GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDI  314 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEE
T ss_pred             CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECC-CCCCEEEEEE
T ss_conf             030000002564211111111100001245654169998999999999489969999899997999926-9998799999


Q ss_pred             CCCCCEEEEEECCCCEEEEEC
Q ss_conf             789969999918981999976
Q 002564          566 SEDGKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       566 spdg~~l~s~s~Dg~I~iwd~  586 (907)
                      +|++++|++++.|++|++||+
T Consensus       315 s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         315 SVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CTTSCEEEEEETTSCEEEEEE
T ss_pred             ECCCCEEEEEECCCEEEEEEE
T ss_conf             279999999908996999977

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.7e-43  Score=285.90  Aligned_cols=310  Identities=22%  Similarity=0.355  Sum_probs=200.6

Q ss_pred             CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf             91999992899987999996999899999569949999910891489994069977899998019999799994998499
Q 002564          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (907)
Q Consensus       171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~  250 (907)
                      ....+++++|.++|++++|+|++++|++|+.||.|++||+.+++.+..+..+ ...|.+++|++++. +++++..++.+.
T Consensus         7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h-~~~V~~~~~~~~~~-~~~~~~~~~~~~   84 (317)
T d1vyhc1           7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH-TDSVQDISFDHSGK-LLASCSADMTIK   84 (317)
T ss_dssp             SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC-SSCEEEEEECTTSS-EEEEEETTSCCC
T ss_pred             CCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCCEEEEEEECCCC-CCCCCCCCCCCC
T ss_conf             9844898588887689999389899999938992999989999799999578-88677776301111-011111111101


Q ss_pred             EEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEE
Q ss_conf             99889860212341243468389999559999999839996799990379998612474148899996899934998999
Q 002564          251 IWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL  330 (907)
Q Consensus       251 iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~  330 (907)
                      .|+....+....+. +|...+.++.|++++..+++++.|+.+++|++...    .....+.+|...+.+++|++++.+++
T Consensus        85 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (317)
T d1vyhc1          85 LWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----YCVKTFTGHREWVRMVRPNQDGTLIA  159 (317)
T ss_dssp             EEETTSSCEEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             CCCCCCCCCCCCCC-CCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCC----EEEEEECCCCCCCEEEECCCCCCEEE
T ss_conf             11001111111100-00000000001699855776526752357511443----03468716777630000166799999


Q ss_pred             EEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEC
Q ss_conf             99489977999802024321420245669885102002210468334864022113454302898609960999990101
Q 002564          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (907)
Q Consensus       331 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~  410 (907)
                      +++.|+.+++|+.....                                                               
T Consensus       160 ~~~~d~~v~~~~~~~~~---------------------------------------------------------------  176 (317)
T d1vyhc1         160 SCSNDQTVRVWVVATKE---------------------------------------------------------------  176 (317)
T ss_dssp             EEETTSCEEEEETTTCC---------------------------------------------------------------
T ss_pred             EEECCCEEEEEEECCCE---------------------------------------------------------------
T ss_conf             99279829997512540---------------------------------------------------------------


Q ss_pred             EECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf             10424320599999864999996799899999479919999688895101440666223567677579999959999899
Q 002564          411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI  490 (907)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~  490 (907)
                                                                     ....+.        +|...+.++.+++++....
T Consensus       177 -----------------------------------------------~~~~~~--------~~~~~i~~~~~~~~~~~~~  201 (317)
T d1vyhc1         177 -----------------------------------------------CKAELR--------EHRHVVECISWAPESSYSS  201 (317)
T ss_dssp             -----------------------------------------------EEEEEC--------CCSSCEEEEEECCSCGGGG
T ss_pred             -----------------------------------------------EEEEEE--------CCCCCCEEEEEEECCCCCE
T ss_conf             -----------------------------------------------347882--------4778733799863256411


Q ss_pred             EEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCC
Q ss_conf             99567709999879876122233186526999920798899993898399999236626899605999700389878996
Q 002564          491 SAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK  570 (907)
Q Consensus       491 s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~  570 (907)
                      ....                     ...........+.++++++.|+.|++||..+++++..+.+|...|++++|+|+++
T Consensus       202 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  260 (317)
T d1vyhc1         202 ISEA---------------------TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK  260 (317)
T ss_dssp             GGGC---------------------CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             EECC---------------------CCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf             1034---------------------5630343025886147516997899988899968899968899879999879999


Q ss_pred             EEEEEECCCCEEEEECCCCCEEEEEEECC-CEEEEEECCCCCEEEEEEECCCEEEEEE
Q ss_conf             99999189819999769774126764087-2579997789763799873697499964
Q 002564          571 WLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       571 ~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~iW~  627 (907)
                      +|++++.||.|++||+.+++++..+..|. +|++++|+|++++|++++.|+ .|++|+
T Consensus       261 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg-~i~iWd  317 (317)
T d1vyhc1         261 FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ-TVKVWE  317 (317)
T ss_dssp             CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS-EEEEEC
T ss_pred             EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC-EEEEEC
T ss_conf             999997989499999999919999928999889999949999999992899-499829

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.3e-41  Score=273.61  Aligned_cols=204  Identities=17%  Similarity=0.303  Sum_probs=143.7

Q ss_pred             CCCCCCEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEE------------------CCCCCCEEEEEECCCCCEEE
Q ss_conf             897552899828999789999966880999966899199999------------------28999879999969998999
Q 002564          136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEF------------------KGWGSSISSCVSSPALDVVA  197 (907)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~------------------~~h~~~I~~l~~sp~~~~la  197 (907)
                      |...+.++.|+|++  ++|++|+ |+.|++||+.+++.+..+                  ..|...|++++|+|++++|+
T Consensus        61 H~~~V~~l~fs~dg--~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          61 HTSVVCCVKFSNDG--EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             CSSCCCEEEECTTS--SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEECCCC--CEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCE
T ss_conf             99968999999999--9999994-99489998136405766316654432443211101467789889999889998012


Q ss_pred             EEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEE
Q ss_conf             99569949999910891489994069977899998019999799994998499998898602123412434683899995
Q 002564          198 VGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF  277 (907)
Q Consensus       198 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~  277 (907)
                      +|+.||.|++|+...++.+..+..+ ...|.++.|++++. .+++++.++.+++||..+........ .+.. ..++.+.
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~-~~~~~~~  213 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGH-EQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDG-VTTVAVS  213 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-CSSC-EEEEEEC
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC-CCCCCCCCEEEEEEECCCCCCCCCCC-CCCC-CCCCCCC
T ss_conf             1344411112111111111111111-11111101111111-11122210156541011111100001-2454-4211236


Q ss_pred             -CCCCEEEEECCCCCEEEEECCCCCCCCCE---EEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEEC
Q ss_conf             -59999999839996799990379998612---4741488999968999349989999948997799980202
Q 002564          278 -ANEPVLMSASADNSIKMWIFDTTDGDPRL---LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD  346 (907)
Q Consensus       278 -~~~~~l~s~~~d~~i~iw~~~~~~~~~~~---~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~  346 (907)
                       +++.++++++.|+.+++|+..........   .....+|...|.++.|+|++.++++++.|+.+++|++...
T Consensus       214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             CCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
T ss_conf             8878758997389819996345573000102443334577898789999799999999978992898751577

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.4e-42  Score=279.59  Aligned_cols=307  Identities=15%  Similarity=0.265  Sum_probs=235.7

Q ss_pred             EEEEECCCCCCCEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf             12696289755289982899978999996688099996689919999928999879999969998999995699499999
Q 002564          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (907)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd  209 (907)
                      ..++.+|.+.+..++|+|++  ++|++|+.||+|++||+.+++++.++.+|...|.+++++|++.+++++..++.+.+|+
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVF--SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSS--SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             CEEECCCCCCEEEEEECCCC--CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             48985888876899993898--9999993899299998999979999957888677776301111011111111101110


Q ss_pred             CCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCC
Q ss_conf             10891489994069977899998019999799994998499998898602123412434683899995599999998399
Q 002564          210 VRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD  289 (907)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d  289 (907)
                      ....+....+..+ ...+.++.|++++. .+++++.|+.+.+|++.+++....+. +|...+.+++|++++.++++++.|
T Consensus        88 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          88 FQGFECIRTMHGH-DHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             TTSSCEEECCCCC-SSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCCCCCCCCC-CCCCEEEECCCCCC-EEEEECCCCCEEEEECCCCEEEEEEC-CCCCCCEEEECCCCCCEEEEEECC
T ss_conf             0111111110000-00000000169985-57765267523575114430346871-677763000016679999999279


Q ss_pred             CCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHH
Q ss_conf             96799990379998612474148899996899934998999994899779998020243214202456698851020022
Q 002564          290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE  369 (907)
Q Consensus       290 ~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (907)
                      +.+++|+....    .....+.+|...+.++.+.|++.........+                                 
T Consensus       165 ~~v~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------------------------  207 (317)
T d1vyhc1         165 QTVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEATG---------------------------------  207 (317)
T ss_dssp             SCEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCS---------------------------------
T ss_pred             CEEEEEEECCC----EEEEEEECCCCCCEEEEEEECCCCCEEECCCC---------------------------------
T ss_conf             82999751254----03478824778733799863256411103456---------------------------------


Q ss_pred             HCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf             10468334864022113454302898609960999990101104243205999998649999967998999994799199
Q 002564          370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE  449 (907)
Q Consensus       370 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~  449 (907)
                                                                                                      
T Consensus       208 --------------------------------------------------------------------------------  207 (317)
T d1vyhc1         208 --------------------------------------------------------------------------------  207 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             EEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCEEEEEEEECCC
Q ss_conf             996888951014406662235676775799999599998999956770999987987612223318-6526999920798
Q 002564          450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG  528 (907)
Q Consensus       450 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~s~~~~  528 (907)
                                                 .........+..+++++.|+.+++|++.+++++..+..+ ..+.+++++|+++
T Consensus       208 ---------------------------~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  260 (317)
T d1vyhc1         208 ---------------------------SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK  260 (317)
T ss_dssp             ---------------------------CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             ---------------------------CEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf             ---------------------------30343025886147516997899988899968899968899879999879999


Q ss_pred             EEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             899993898399999236626899605999700389878996999991898199997
Q 002564          529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (907)
Q Consensus       529 ~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd  585 (907)
                      +|++++.||.|++||+.+++++..+.+|.+.|++++|+|++++|++++.||+|++||
T Consensus       261 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         261 FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf             999997989499999999919999928999889999949999999992899499829

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-40  Score=269.11  Aligned_cols=292  Identities=17%  Similarity=0.349  Sum_probs=185.9

Q ss_pred             EEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf             19999928999879999969998999995699499999108914899940699778999980199997999949984999
Q 002564          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI  251 (907)
Q Consensus       172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i  251 (907)
                      +..++++||.+.|++++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+|.+++|+|++. ++++|+.|+.+.+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~-~~~v~~v~~~~~~~-~l~~~~~d~~i~~  123 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR-SSWVMTCAYAPSGN-YVACGGLDNICSI  123 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECS-CSCEEEEEECTTSS-EEEEEETTCCEEE
T ss_pred             EEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC-CCCEEEEEEECCCE-EEEEECCCCEEEC
T ss_conf             652798887898889999899999999978995556310210257997246-53377567601211-4431013320101


Q ss_pred             EECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEE
Q ss_conf             98898602123412434683899995599999998399967999903799986124741488999968999349989999
Q 002564          252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS  331 (907)
Q Consensus       252 wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s  331 (907)
                      |+..                                           .............+|.......... .+..+..
T Consensus       124 ~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  159 (340)
T d1tbga_         124 YNLK-------------------------------------------TREGNVRVSRELAGHTGYLSCCRFL-DDNQIVT  159 (340)
T ss_dssp             EESS-------------------------------------------SSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEE
T ss_pred             CCCC-------------------------------------------CCCCCCCCCEECCCCCCCCCCCCCC-CCCCCCC
T ss_conf             3322-------------------------------------------2212221110013542110111111-1111111


Q ss_pred             EECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECE
Q ss_conf             94899779998020243214202456698851020022104683348640221134543028986099609999901011
Q 002564          332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV  411 (907)
Q Consensus       332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~  411 (907)
                      ...+.....+...........                                                           
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------  180 (340)
T d1tbga_         160 SSGDTTCALWDIETGQQTTTF-----------------------------------------------------------  180 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEE-----------------------------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCC-----------------------------------------------------------
T ss_conf             124454320012322111112-----------------------------------------------------------


Q ss_pred             ECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf             04243205999998649999967998999994799199996888951014406662235676775799999599998999
Q 002564          412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS  491 (907)
Q Consensus       412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  491 (907)
                               ......+....+.+.+.++++|..++.|++||+.++.....+.        +|...|++++|+|+++++++
T Consensus       181 ---------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--------~h~~~i~~v~~~p~~~~l~s  243 (340)
T d1tbga_         181 ---------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT--------GHESDINAICFFPNGNAFAT  243 (340)
T ss_dssp             ---------ECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEE
T ss_pred             ---------CCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEEE--------CCCCCEEEEEECCCCCEEEE
T ss_conf             ---------3310157630012442126876057369999999994889995--------78898589999799899999


Q ss_pred             EECCCEEEEEECCCCCEEEEEEC---CCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf             95677099998798761222331---865269999207988999938983999992366268996059997003898789
Q 002564          492 AGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (907)
Q Consensus       492 ~~~dg~i~iwd~~~~~~~~~~~~---~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspd  568 (907)
                      ++.||.+++|++........+..   ..++.+++|+|++.++++|+.||.|++||+.+++++..+.+|.++|++++|+|+
T Consensus       244 ~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d  323 (340)
T d1tbga_         244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECC
T ss_conf             96999699975212211111112244574589999899999999979798999999999398998489997899999089


Q ss_pred             CCEEEEEECCCCEEEEE
Q ss_conf             96999991898199997
Q 002564          569 GKWLLSSGMDGSLRIWD  585 (907)
Q Consensus       569 g~~l~s~s~Dg~I~iwd  585 (907)
                      +++|++++.||+|++||
T Consensus       324 ~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         324 GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEETTSCEEEEC
T ss_pred             CCEEEEECCCCEEEEEC
T ss_conf             99999990699799859

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.3e-40  Score=268.69  Aligned_cols=197  Identities=14%  Similarity=0.218  Sum_probs=126.6

Q ss_pred             CCEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE--
Q ss_conf             528998289997899999668809999668991999992899987999996999899999569949999910891489--
Q 002564          140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV--  217 (907)
Q Consensus       140 ~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~--  217 (907)
                      ....+++|++  +.++.++ ++.+.+|++.++...+.+.+|...|++++|+|++++|++|+.||.|++|++.+++...  
T Consensus        20 ~~~~a~~~~g--~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~   96 (311)
T d1nr0a1          20 AVVLGNTPAG--DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT   96 (311)
T ss_dssp             CCCCEECTTS--SEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             EEEEEECCCC--CEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCC
T ss_conf             5999996998--9999996-999999999999661797478888899999489996722556736746631011110000


Q ss_pred             EEEECCCCCEEEEEEECCCCCEEEEEEC--CCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCC-EEEEECCCCCEEE
Q ss_conf             9940699778999980199997999949--984999988986021234124346838999955999-9999839996799
Q 002564          218 TFTHSMRGAVTALAFSSDGQPLLASGAS--SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKM  294 (907)
Q Consensus       218 ~~~~~~~~~v~~l~fs~dg~~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~i  294 (907)
                      .+.. |.++|.+++|+|+++ ++++++.  +..+.+|++++++....+. +|...|.+++|+|+++ .+++++.|+.|++
T Consensus        97 ~~~~-~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i  173 (311)
T d1nr0a1          97 TIPV-FSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGTSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNTVAI  173 (311)
T ss_dssp             EEEC-SSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCCBCBCCC-CCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred             CCCC-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf             1343-357543323331110-0011112211111111111111111111-111111111112111012000112211111


Q ss_pred             EECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEEC
Q ss_conf             9903799986124741488999968999349989999948997799980202
Q 002564          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD  346 (907)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~  346 (907)
                      |+++..    .......+|..+|.++.|+|+++++++++.|+.+++|+....
T Consensus       174 ~d~~~~----~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         174 FEGPPF----KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             EETTTB----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             111111----111111111111111234764221211111111100012446

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-41  Score=277.86  Aligned_cols=264  Identities=12%  Similarity=0.146  Sum_probs=184.8

Q ss_pred             CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC--EEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCE
Q ss_conf             9987999996999899999569949999910891--48999406997789999801999979999499849999889860
Q 002564          181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR  258 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~  258 (907)
                      ..+|+|++|+|++++||+|+.||.|++|+..+++  .+..+.. |.++|.+++|+|+++ +|++++.|+.|++||+.++.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~-~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECC-CCCCEEEEEECCCCC-EEEEEECCCEEEEEEECCCC
T ss_conf             9883899998999999999488989999888997899999558-899888999979999-99999799939998620332


Q ss_pred             EEEEEE-CCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf             212341-2434683899995599999998399967999903799986124741488999968999349989999948997
Q 002564          259 LQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (907)
Q Consensus       259 ~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~  337 (907)
                      ....+. .+|...|.++.|+|+++.+++++.|+.+++|+++.............+|...|.+++|+|++.++++++.|+.
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCE
T ss_conf             11001223221100011111112110000025763025442033433111001011122211111111111000134767


Q ss_pred             EEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEE
Q ss_conf             79998020243214202456698851020022104683348640221134543028986099609999901011042432
Q 002564          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (907)
Q Consensus       338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~  417 (907)
                      +++|+..............                                                |..  .......+
T Consensus       165 v~v~~~~~~~~~~~~~~~~------------------------------------------------~~~--~~~~~~~~  194 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTP------------------------------------------------WGS--KMPFGELM  194 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBT------------------------------------------------TBS--CCCTTCEE
T ss_pred             EEEEEECCCCCCCCCCCCC------------------------------------------------CCC--CCCCEEEE
T ss_conf             9998401576431001221------------------------------------------------111--11110112


Q ss_pred             ECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf             05999998649999967998999994799199996888951014406662235676775799999599998999956770
Q 002564          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (907)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  497 (907)
                      .....+...+.+++|+|+|+++++++.||.|.+||+..+.....+.        .|..+|.+++|+++++++++ +.|+.
T Consensus       195 ~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~s~~fs~d~~~la~-g~d~~  265 (371)
T d1k8kc_         195 FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA--------SETLPLLAVTFITESSLVAA-GHDCF  265 (371)
T ss_dssp             EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE--------CSSCCEEEEEEEETTEEEEE-ETTSS
T ss_pred             EECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEE--------CCCCCCEEEEECCCCCEEEE-ECCCC
T ss_conf             4404766747898751233210000147860588641012100000--------14665203654699979999-81992


Q ss_pred             EEEEECCC
Q ss_conf             99998798
Q 002564          498 IKVWDFKG  505 (907)
Q Consensus       498 i~iwd~~~  505 (907)
                      +++|....
T Consensus       266 ~~~~~~~~  273 (371)
T d1k8kc_         266 PVLFTYDS  273 (371)
T ss_dssp             CEEEEEET
T ss_pred             EEEEEEEC
T ss_conf             67877608

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-39  Score=260.44  Aligned_cols=341  Identities=17%  Similarity=0.260  Sum_probs=184.8

Q ss_pred             EEEECCCCCCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf             99992899987-99999699989999956994999991089148999406997789999801999979999499849999
Q 002564          174 LYEFKGWGSSI-SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW  252 (907)
Q Consensus       174 ~~~~~~h~~~I-~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iw  252 (907)
                      ..+++||...| +|+.+  ++++|++|+.||.|++||+.+++.+.++..| .++|++++|++++  ++++|+.|+.|++|
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H-~~~V~~l~~s~~~--~l~s~s~D~~i~iw   79 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH-DGGVWALKYAHGG--ILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECC-SSCEEEEEEETTT--EEEEEETTCCEEEE
T ss_pred             CEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCC--EEEEEECCCCCCCC
T ss_conf             58889837886999998--8999999918990999989999399999789-9988999986999--99999645244321


Q ss_pred             ECCCCEEEEEEEC-CCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCC-CEEE
Q ss_conf             8898602123412-4346838999955999999983999679999037999861247414889999689993499-8999
Q 002564          253 NLEKRRLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG-RHIL  330 (907)
Q Consensus       253 d~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g-~~l~  330 (907)
                      +....+....... .+........+.+++..+++++.|+.+++|++.....    .... +...........+.. ..+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS----VPDH-GEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC----------------CCCEEESCTTTCTTEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCE----ECCC-CCCCEECCCEECCCCCCCEE
T ss_conf             111111111110011111111111112322045543888689998567730----0124-65200010000011234012


Q ss_pred             EEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEC
Q ss_conf             99489977999802024321420245669885102002210468334864022113454302898609960999990101
Q 002564          331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF  410 (907)
Q Consensus       331 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~  410 (907)
                      .        ..                                                                     
T Consensus       155 ~--------~~---------------------------------------------------------------------  157 (355)
T d1nexb2         155 G--------VL---------------------------------------------------------------------  157 (355)
T ss_dssp             E--------EE---------------------------------------------------------------------
T ss_pred             E--------EE---------------------------------------------------------------------
T ss_conf             1--------01---------------------------------------------------------------------


Q ss_pred             EECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf             10424320599999864999996799899999479919999688895101440666223567677579999959999899
Q 002564          411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI  490 (907)
Q Consensus       411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~  490 (907)
                                ..  .........++++.++.+..++.+++|++.++.......        ++...+.++.+++++..++
T Consensus       158 ----------~~--~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  217 (355)
T d1nexb2         158 ----------RG--HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS--------GHTDRIYSTIYDHERKRCI  217 (355)
T ss_dssp             ----------EC--CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC--------CCSSCEEEEEEETTTTEEE
T ss_pred             ----------EE--CCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEE--------CCCCCCCCCCCCCCCEEEE
T ss_conf             ----------10--022210000256334421144204443013110001100--------0123321111112100210


Q ss_pred             EEECCCEEEEEECCCCCEEEEEECC-CCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEE-EECCC
Q ss_conf             9956770999987987612223318-652699992079889999389839999923662689960599970038-98789
Q 002564          491 SAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF-CFSED  568 (907)
Q Consensus       491 s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i-~fspd  568 (907)
                      +++.|+.+++|+..++.....+..+ ..+.++.++  ++++++++.|+.|++||+.+....  +..|...+..+ .++++
T Consensus       218 ~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~  293 (355)
T d1nexb2         218 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVS  293 (355)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEEC
T ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCCEE--CCCCCCCCEEEEEECCC
T ss_conf             12456368763012211111111111111111232--100333201111111111111100--01246882299998499


Q ss_pred             CCEEEEEECCCCEEEEECCCCCEEEE-EEEC-CCEEEEEECCCCCEEEEEEECCCEEEEEEC
Q ss_conf             96999991898199997697741267-6408-725799977897637998736974999644
Q 002564          569 GKWLLSSGMDGSLRIWDVILARQIDA-IHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       569 g~~l~s~s~Dg~I~iwd~~~~~~i~~-~~~~-~~v~~l~~spdg~~lat~~~d~~~i~iW~~  628 (907)
                      +++++++ .|+.|++||+++++++.. +..| .+|.+++|+|+ .++++++.|| .++||..
T Consensus       294 ~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg-~~~l~~~  352 (355)
T d1nexb2         294 DNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDG-QSFLEIL  352 (355)
T ss_dssp             SSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSS-CEEEEEE
T ss_pred             CCEEEEE-ECCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC-EEEEEEECCC-CEEEEEE
T ss_conf             9899998-09979999999997988884589998999998399-1999998989-0999999

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.3e-40  Score=266.85  Aligned_cols=153  Identities=16%  Similarity=0.203  Sum_probs=70.0

Q ss_pred             CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEE--
Q ss_conf             879999969998999995699499999108914899940699778999980199997999949984999988986021--
Q 002564          183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ--  260 (907)
Q Consensus       183 ~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~--  260 (907)
                      ...+++++|+++.++.+. ++.+.+|++.+......+..| ...|++++|+|+|+ ++++|+.||.|++||+.++...  
T Consensus        19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H-~~~v~~~~~sp~g~-~latg~~dg~i~iwd~~~~~~~~~   95 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEH-SHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK   95 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCC-SSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE
T ss_pred             CEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCC-CCCEEEEEEECCCC-EEECCCCCCEEEEEEEECCCCCCC
T ss_conf             759999969989999996-999999999999661797478-88889999948999-672255673674663101111000


Q ss_pred             EEEECCCCCCEEEEEEECCCCEEEEECC--CCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCE-EEEEECCCC
Q ss_conf             2341243468389999559999999839--9967999903799986124741488999968999349989-999948997
Q 002564          261 SVIREAHDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRA  337 (907)
Q Consensus       261 ~~~~~~h~~~V~~l~~~~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~-l~s~~~dg~  337 (907)
                      ..+. .|..+|.+++|+|+++++++++.  +..+++|+++...    ....+.+|...|.+++|+|++.+ +++++.|+.
T Consensus        96 ~~~~-~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~----~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~  170 (311)
T d1nr0a1          96 TTIP-VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT----SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT  170 (311)
T ss_dssp             EEEE-CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC----BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred             CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             0134-33575433233311100011112211111111111111----111111111111111112111012000112211


Q ss_pred             EEEEEC
Q ss_conf             799980
Q 002564          338 FRLFSV  343 (907)
Q Consensus       338 i~iwd~  343 (907)
                      +++|++
T Consensus       171 i~i~d~  176 (311)
T d1nr0a1         171 VAIFEG  176 (311)
T ss_dssp             EEEEET
T ss_pred             CCCCCC
T ss_conf             111111

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-38  Score=257.36  Aligned_cols=165  Identities=19%  Similarity=0.342  Sum_probs=73.8

Q ss_pred             EECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf             96689919999928999879999969998999995699499999108914899940699778999980199997999949
Q 002564          166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS  245 (907)
Q Consensus       166 wd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~  245 (907)
                      |+..+.++...+++|...|.+ ++++++++|++|+.||.|++||+.+++.+.++..| .+.|.+++|+++   ++++++.
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h-~~~V~~v~~~~~---~l~s~s~   75 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH-TGGVWSSQMRDN---IIISGST   75 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCC-SSCEEEEEEETT---EEEEEET
T ss_pred             CCCCCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCC---CCCCCEE
T ss_conf             989988758898886875099-99978999999918990999989999799999488-999899994798---6321000


Q ss_pred             CCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECC
Q ss_conf             98499998898602123412434683899995599999998399967999903799986124741488999968999349
Q 002564          246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN  325 (907)
Q Consensus       246 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~  325 (907)
                      |+.+++|+........... .+...+......  ...+..+..|+.+.+|+.....    .......+..  ........
T Consensus        76 D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~~~~--~~~~~~~~  146 (342)
T d2ovrb2          76 DRTLKVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ----CLHVLMGHVA--AVRCVQYD  146 (342)
T ss_dssp             TSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC----EEEEEECCSS--CEEEEEEC
T ss_pred             CCCCCCCCCCCCCCEECCC-CCCEEEEEEECC--CCCCCCCCCCEEEEEEECCCCC----CEEEEECCCC--CCEEECCC
T ss_conf             0011111111000000012-333047652024--6522123444037874035563----0011100111--10000013


Q ss_pred             CCEEEEEECCCCEEEEECE
Q ss_conf             9899999489977999802
Q 002564          326 GRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       326 g~~l~s~~~dg~i~iwd~~  344 (907)
                      ...++.++.|+.+++|+..
T Consensus       147 ~~~~~~~~~d~~i~~~d~~  165 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPE  165 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGG
T ss_pred             CCEEEEECCCCEEEEEECC
T ss_conf             3302433589869995252

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-38  Score=258.42  Aligned_cols=346  Identities=14%  Similarity=0.202  Sum_probs=253.1

Q ss_pred             EEEEECCCCCCCEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf             12696289755289982899978999996688099996689919999928999879999969998999995699499999
Q 002564          130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN  209 (907)
Q Consensus       130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd  209 (907)
                      ..++++|...+.+| +.+++  ++|++|+.||+|++||+.+++++.++.+|.++|++++|+|+ ++|++|+.||.|++|+
T Consensus         5 ~~tL~GH~~~vitc-~~~~~--~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           5 RTTLRGHMTSVITC-LQFED--NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEECCSSSCEEE-EEEET--TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             CEEECCCCCCCEEE-EEECC--CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCC
T ss_conf             58889837886999-99889--99999918990999989999399999789998899998699-9999996452443211


Q ss_pred             CCCCCEEEEEEECC-CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECC
Q ss_conf             10891489994069-97789999801999979999499849999889860212341243468389999559999999839
Q 002564          210 VRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA  288 (907)
Q Consensus       210 ~~~~~~~~~~~~~~-~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~  288 (907)
                      ....+......... ........+.+++. .+++++.|+.|++|++.+..........+.  .......+          
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~----------  147 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHD--YPLVFHTP----------  147 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------C--CCEEESCT----------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEECCCCCEEEEECCCCCEECCCCCCCE--ECCCEECC----------
T ss_conf             11111111110011111111111112322-045543888689998567730012465200--01000001----------


Q ss_pred             CCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHH
Q ss_conf             99679999037999861247414889999689993499899999489977999802024321420245669885102002
Q 002564          289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE  368 (907)
Q Consensus       289 d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (907)
                                  ............|...+..  +.+++..++++..|+.+++|++...+.....                
T Consensus       148 ------------~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~----------------  197 (355)
T d1nexb2         148 ------------EENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL----------------  197 (355)
T ss_dssp             ------------TTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEE----------------
T ss_pred             ------------CCCCCEEEEEEECCCCCCC--CCCCCCEEEEECCCCEEEEEECCCCCCEEEE----------------
T ss_conf             ------------1234012101100222100--0025633442114420444301311000110----------------


Q ss_pred             HHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf             21046833486402211345430289860996099999010110424320599999864999996799899999479919
Q 002564          369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI  448 (907)
Q Consensus       369 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i  448 (907)
                                                                          ..+...+.++.++++++.+++++.+|.|
T Consensus       198 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i  225 (355)
T d1nexb2         198 ----------------------------------------------------SGHTDRIYSTIYDHERKRCISASMDTTI  225 (355)
T ss_dssp             ----------------------------------------------------CCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             ----------------------------------------------------ECCCCCCCCCCCCCCCEEEECCCCCCEE
T ss_conf             ----------------------------------------------------0012332111111210021012456368


Q ss_pred             EEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCC
Q ss_conf             99968889510144066622356767757999995999989999567709999879876122233186526999920798
Q 002564          449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG  528 (907)
Q Consensus       449 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~  528 (907)
                      ++|+..++.....+.        +|...|.++++++  +++++++.||.|++||+.+.................+++++.
T Consensus       226 ~i~d~~~~~~~~~~~--------~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (355)
T d1nexb2         226 RIWDLENGELMYTLQ--------GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN  295 (355)
T ss_dssp             EEEETTTCCEEEEEC--------CCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSS
T ss_pred             EEEECCCCCCCCCCC--------CCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCC
T ss_conf             763012211111111--------1111111112321--003332011111111111111000124688229999849998


Q ss_pred             EEEEEECCCEEEEEECCCCEEEE-EEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             89999389839999923662689-96059997003898789969999918981999976
Q 002564          529 LLATVADDLVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       529 ~la~~~~dg~i~i~d~~~~~~~~-~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~  586 (907)
                      +++++ .|+.|++||++++++++ .+.+|.++|++++|+|+ .++++++.||.+++|.+
T Consensus       296 ~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         296 ILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEEEE-ECCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC-EEEEEEECCCCEEEEEE
T ss_conf             99998-09979999999997988884589998999998399-19999989890999999

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-38  Score=258.05  Aligned_cols=291  Identities=20%  Similarity=0.312  Sum_probs=212.4

Q ss_pred             EEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf             02123412434683899995599999998399967999903799986124741488999968999349989999948997
Q 002564          258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA  337 (907)
Q Consensus       258 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~  337 (907)
                      +...++. +|.+.|++++|+|++++|++|+.||.|++|++...    ..+..+.+|..+|.+++|+|++.++++++.|+.
T Consensus        46 ~~~~tL~-GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~----~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          46 RTRRTLR-GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT----NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             CEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT----EEEEEEECSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             EEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC----EEEEEEECCCCCEEEEEEECCCEEEEEECCCCE
T ss_conf             6527988-87898889999899999999978995556310210----257997246533775676012114431013320


Q ss_pred             EEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEE
Q ss_conf             79998020243214202456698851020022104683348640221134543028986099609999901011042432
Q 002564          338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL  417 (907)
Q Consensus       338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~  417 (907)
                      +++|+............                                                               
T Consensus       121 i~~~~~~~~~~~~~~~~---------------------------------------------------------------  137 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSR---------------------------------------------------------------  137 (340)
T ss_dssp             EEEEESSSSCSCCCEEE---------------------------------------------------------------
T ss_pred             EECCCCCCCCCCCCCCE---------------------------------------------------------------
T ss_conf             10133222212221110---------------------------------------------------------------


Q ss_pred             ECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf             05999998649999967998999994799199996888951014406662235676775799999599998999956770
Q 002564          418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD  497 (907)
Q Consensus       418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~  497 (907)
                       ...++ ...........+..+.....++....+............        .+...+....+.+.+.++++++.|+.
T Consensus       138 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~  207 (340)
T d1tbga_         138 -ELAGH-TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT--------GHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             -EECCC-SSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE--------CCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             -ECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCEEEEEECCCCCCCEEEEEECCCE
T ss_conf             -01354-211011111111111111244543200123221111123--------31015763001244212687605736


Q ss_pred             EEEEECCCCCEEEEEECC-CCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEE--CCCCCEEEEEECCCCCEEEE
Q ss_conf             999987987612223318-652699992079889999389839999923662689960--59997003898789969999
Q 002564          498 IKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE--GHTDRITDFCFSEDGKWLLS  574 (907)
Q Consensus       498 i~iwd~~~~~~~~~~~~~-~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~--~h~~~I~~i~fspdg~~l~s  574 (907)
                      +++||+.++++...+..+ ..|.+++|+|++.++++++.|+.|++|++........+.  .+...|++++|+|++++|++
T Consensus       208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
T d1tbga_         208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEE
T ss_pred             EEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
T ss_conf             99999999948899957889858999979989999996999699975212211111112244574589999899999999


Q ss_pred             EECCCCEEEEECCCCCEEEEEEECC-CEEEEEECCCCCEEEEEEECCCEEEEEE
Q ss_conf             9189819999769774126764087-2579997789763799873697499964
Q 002564          575 SGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       575 ~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~iW~  627 (907)
                      ++.||.|++||+.+++++..+..|. +|++++|+|++.+|++++.|+ .|++|+
T Consensus       288 g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg-~v~iWd  340 (340)
T d1tbga_         288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS-FLKIWN  340 (340)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS-CEEEEC
T ss_pred             EECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCC-EEEEEC
T ss_conf             97979899999999939899848999789999908999999990699-799859

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-39  Score=264.65  Aligned_cols=253  Identities=10%  Similarity=0.092  Sum_probs=133.4

Q ss_pred             CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCE--EEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCC
Q ss_conf             97789999801999979999499849999889860--2123412434683899995599999998399967999903799
Q 002564          224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD  301 (907)
Q Consensus       224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~  301 (907)
                      ..+|+|++|+||++ ++++|+.+|.|++||+.+++  .+..+. +|.++|.+++|+|++++|++++.|+.|++|+++...
T Consensus         7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~~l~-gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCC
T ss_conf             98838999989999-9999948898999988899789999955-889988899997999999999799939998620332


Q ss_pred             CCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEE
Q ss_conf             98612474148899996899934998999994899779998020243214202456698851020022104683348640
Q 002564          302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC  381 (907)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  381 (907)
                        ........+|...+.++.|+|+++.+++++.|+.+++|++.........                             
T Consensus        85 --~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~-----------------------------  133 (371)
T d1k8kc_          85 --WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC-----------------------------  133 (371)
T ss_dssp             --EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-----------------------------
T ss_pred             --CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCC-----------------------------
T ss_conf             --1100122322110001111111211000002576302544203343311-----------------------------


Q ss_pred             CCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEE
Q ss_conf             22113454302898609960999990101104243205999998649999967998999994799199996888951014
Q 002564          382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (907)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~  461 (907)
                                                         ......+...+.+++|+|+++++++|+.||.+++|+.........
T Consensus       134 -----------------------------------~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~  178 (371)
T d1k8kc_         134 -----------------------------------KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER  178 (371)
T ss_dssp             -----------------------------------EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCC
T ss_pred             -----------------------------------CCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCC
T ss_conf             -----------------------------------100101112221111111111100013476799984015764310


Q ss_pred             EECC----------CCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCEEEEEEEECCCEE
Q ss_conf             4066----------62235676775799999599998999956770999987987612223318-652699992079889
Q 002564          462 YLDM----------SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLL  530 (907)
Q Consensus       462 ~~~~----------~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~s~~~~~l  530 (907)
                      ....          .......|...|.+++|+|+++++++++.|+.|++||+.+++.+..+..+ .++.+++|+|++.++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~l  258 (371)
T d1k8kc_         179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV  258 (371)
T ss_dssp             CCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEE
T ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEE
T ss_conf             01221111111101124404766747898751233210000147860588641012100000146652036546999799


Q ss_pred             EEEECCCEEEEEECC
Q ss_conf             999389839999923
Q 002564          531 ATVADDLVIRLFDVV  545 (907)
Q Consensus       531 a~~~~dg~i~i~d~~  545 (907)
                      ++|. |+.+++|...
T Consensus       259 a~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         259 AAGH-DCFPVLFTYD  272 (371)
T ss_dssp             EEET-TSSCEEEEEE
T ss_pred             EEEC-CCCEEEEEEE
T ss_conf             9981-9926787760

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-37  Score=248.20  Aligned_cols=156  Identities=20%  Similarity=0.316  Sum_probs=57.8

Q ss_pred             EEEECCCCCCCEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf             26962897552899828999789999966880999966899199999289998799999699989999956994999991
Q 002564          131 GHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV  210 (907)
Q Consensus       131 ~~~~~~~~~~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~  210 (907)
                      ..+++|...+.+ ++++++  ++|++|+.||+|++||+.++++++++.+|...|.+++|+|+  ++++|+.|+.+++|+.
T Consensus        10 ~~l~GH~~~V~s-~~~~~g--~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCG--NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA   84 (342)
T ss_dssp             EEEECSTTSCEE-EEEEET--TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             EEECCCCCCEEE-EEEECC--CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCCCCCCCC
T ss_conf             898886875099-999789--99999918990999989999799999488999899994798--6321000001111111


Q ss_pred             CCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCC
Q ss_conf             08914899940699778999980199997999949984999988986021234124346838999955999999983999
Q 002564          211 RYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN  290 (907)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~  290 (907)
                      ............ ...+....+.+  . .+..+..++.+.+|+..+++....+. .+...  .....+....+++++.|+
T Consensus        85 ~~~~~~~~~~~~-~~~~~~~~~~~--~-~~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          85 ETGECIHTLYGH-TSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCLHVLM-GHVAA--VRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             TTTEEEEEECCC-SSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEEEEEE-CCSSC--EEEEEECSSCEEEEETTS
T ss_pred             CCCCCEECCCCC-CEEEEEEECCC--C-CCCCCCCCEEEEEEECCCCCCEEEEE-CCCCC--CEEECCCCCEEEEECCCC
T ss_conf             100000001233-30476520246--5-22123444037874035563001110-01111--000001333024335898


Q ss_pred             CEEEEECC
Q ss_conf             67999903
Q 002564          291 SIKMWIFD  298 (907)
Q Consensus       291 ~i~iw~~~  298 (907)
                      .+++|+..
T Consensus       158 ~i~~~d~~  165 (342)
T d2ovrb2         158 MVKVWDPE  165 (342)
T ss_dssp             CEEEEEGG
T ss_pred             EEEEEECC
T ss_conf             69995252

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-37  Score=252.67  Aligned_cols=163  Identities=13%  Similarity=0.162  Sum_probs=87.9

Q ss_pred             CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf             91999992899987999996999899999569949999910891489994069977899998019999799994998499
Q 002564          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (907)
Q Consensus       171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~  250 (907)
                      |+..+.+.||..+|++++|+|++++|++|+.||.|++||+.+++.+..+...|...|++++|+|++.  +++++.|+.++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~~~~~~d~~v~   79 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLK   79 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC--EEEEETTTEEE
T ss_pred             CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE--EECCCCEEEEE
T ss_conf             8613684888878289999799999999908992999999999688998378877489988403311--21023102688


Q ss_pred             EEECCCCEEE--EEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCE
Q ss_conf             9988986021--23412434683899995599999998399967999903799986124741488999968999349989
Q 002564          251 IWNLEKRRLQ--SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH  328 (907)
Q Consensus       251 iwd~~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~  328 (907)
                      +|+.......  ......+...+.++.|++++..+++++ ++.+++|+..      +....  .....+.+++|+|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~------~~~~~--~~~~~~~~~~~s~~~~~  150 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG------KLTEV--PISYNSSCVALSNDKQF  150 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT------EEEEE--ECSSCEEEEEECTTSCE
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC------CCCCC--CCCCCCCCCCCCCCCCC
T ss_conf             731677620111000111134432100112211111222-2222111111------11110--11112332211111111


Q ss_pred             EEEEECCCCEEEEECE
Q ss_conf             9999489977999802
Q 002564          329 ILSAGQDRAFRLFSVI  344 (907)
Q Consensus       329 l~s~~~dg~i~iwd~~  344 (907)
                      +++++.|+.+++|++.
T Consensus       151 l~~g~~dg~i~~~d~~  166 (299)
T d1nr0a2         151 VAVGGQDSKVHVYKLS  166 (299)
T ss_dssp             EEEEETTSEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCC
T ss_conf             1111111111111111

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.5e-38  Score=253.64  Aligned_cols=290  Identities=17%  Similarity=0.226  Sum_probs=152.9

Q ss_pred             EEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEE
Q ss_conf             48999406997789999801999979999499849999889860212341243468389999559999999839996799
Q 002564          215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM  294 (907)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~i  294 (907)
                      ..+.+ .+|.+.|++++|+||++ +|++|+.||.|++||+.+++....+..+|...|.+++|+|++.+ ++++.|+.+++
T Consensus         4 ~~~~~-~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~   80 (299)
T d1nr0a2           4 IDQVR-YGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV   80 (299)
T ss_dssp             EEEEE-CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred             CCEEC-CCCCCCCEEEEECCCCC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEE-ECCCCEEEEEE
T ss_conf             13684-88887828999979999-99999089929999999996889983788774899884033112-10231026887


Q ss_pred             EECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCC
Q ss_conf             99037999861247414889999689993499899999489977999802024321420245669885102002210468
Q 002564          295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK  374 (907)
Q Consensus       295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (907)
                      |+....... ........+...+.++.+++++..++++. ++.+.+|+.......                         
T Consensus        81 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~~-------------------------  133 (299)
T d1nr0a2          81 VPAGGSGVD-SSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTEV-------------------------  133 (299)
T ss_dssp             ECSSSSSSC-TTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEEE-------------------------
T ss_pred             ECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC-------------------------
T ss_conf             316776201-11000111134432100112211111222-222211111111110-------------------------


Q ss_pred             CEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             33486402211345430289860996099999010110424320599999864999996799899999479919999688
Q 002564          375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ  454 (907)
Q Consensus       375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~  454 (907)
                                                                     .....+.+++++|+++++++|+.+|.+.+|++.
T Consensus       134 -----------------------------------------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~  166 (299)
T d1nr0a2         134 -----------------------------------------------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS  166 (299)
T ss_dssp             -----------------------------------------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEE
T ss_pred             -----------------------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -----------------------------------------------111123322111111111111111111111111


Q ss_pred             CCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEE
Q ss_conf             89510144066622356767757999995999989999567709999879876122233186526999920798899993
Q 002564          455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA  534 (907)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~  534 (907)
                      ++.......       ..|...|++++|+|+++++++++.|+.+++|++.++.....                       
T Consensus       167 ~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-----------------------  216 (299)
T d1nr0a2         167 GASVSEVKT-------IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH-----------------------  216 (299)
T ss_dssp             TTEEEEEEE-------EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC-----------------------
T ss_pred             CCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------------------
T ss_conf             111111111-------11111111111111111111111111111111111111111-----------------------


Q ss_pred             CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE---ECC-CEEEEEECCCC
Q ss_conf             89839999923662689960599970038987899699999189819999769774126764---087-25799977897
Q 002564          535 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH---VDV-SITALSLSPNM  610 (907)
Q Consensus       535 ~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~---~~~-~v~~l~~spdg  610 (907)
                                     ...+.+|...|++++|+|++++|++++.|+.|++||+.++.......   ++. .+.++.| +++
T Consensus       217 ---------------~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~  280 (299)
T d1nr0a2         217 ---------------TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNE  280 (299)
T ss_dssp             ---------------CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EET
T ss_pred             ---------------CCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-CCC
T ss_conf             ---------------1111111111111124666451388828997999989999731489834898896899997-798


Q ss_pred             CEEEEEEECCCEEEEEEC
Q ss_conf             637998736974999644
Q 002564          611 DVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       611 ~~lat~~~d~~~i~iW~~  628 (907)
                      .+|++++.|+ .|++|++
T Consensus       281 ~~l~s~s~D~-~i~iWdl  297 (299)
T d1nr0a2         281 TTIVSAGQDS-NIKFWNV  297 (299)
T ss_dssp             TEEEEEETTS-CEEEEEC
T ss_pred             CEEEEEECCC-EEEEEEC
T ss_conf             9999992899-7999944

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.3e-35  Score=235.15  Aligned_cols=290  Identities=13%  Similarity=0.177  Sum_probs=191.4

Q ss_pred             CCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCC-CCCEEEEEEC--CCCEEEEEECCCCEEEEECEE
Q ss_conf             6838999955999999983999679999037999861247414889-9996899934--998999994899779998020
Q 002564          269 NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-APPLCIRFYA--NGRHILSAGQDRAFRLFSVIQ  345 (907)
Q Consensus       269 ~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~-~~v~~i~~~~--~g~~l~s~~~dg~i~iwd~~~  345 (907)
                      +.+++++|+|+++.++.++.+ .+.++.++...........+.+|. ..+++++|+|  ++.++++++.||+|++|++..
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~-~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGK-SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETT-EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECC-CEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECC
T ss_conf             984799998997999999699-8799997688887650289907899988999981179997999994899779854058


Q ss_pred             CCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCC
Q ss_conf             24321420245669885102002210468334864022113454302898609960999990101104243205999998
Q 002564          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (907)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~  425 (907)
                      ......+...                                                            .......+..
T Consensus        97 ~~~~~~~~~~------------------------------------------------------------~~~~~~~~~~  116 (325)
T d1pgua1          97 DKESNSVEVN------------------------------------------------------------VKSEFQVLAG  116 (325)
T ss_dssp             EGGGTEEEEE------------------------------------------------------------EEEEEECCSS
T ss_pred             CCCEEEEECC------------------------------------------------------------CCCCCCCCCC
T ss_conf             8621565100------------------------------------------------------------2541136567


Q ss_pred             CEEEEEECCCCCEEEEEEC--CCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCE-EEEEECCCEEEEEE
Q ss_conf             6499999679989999947--99199996888951014406662235676775799999599998-99995677099998
Q 002564          426 AVKACTISACGNFAVLGTA--GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL-MISAGYHGDIKVWD  502 (907)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~dg~i~iwd  502 (907)
                      .+.+++|+++++++++++.  ++.+.+|+..++.....+.        +|...|.+++|++++.. +++++.|+.+++|+
T Consensus       117 ~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d  188 (325)
T d1pgua1         117 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS--------GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ  188 (325)
T ss_dssp             CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC--------SCSSCEEEEEECSSSSCEEEEEETTTEEEEEE
T ss_pred             CEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEE--------ECCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf             3779998999882201001244047888502331100120--------01234321111234320688862111221111


Q ss_pred             CCCCCEEEEEEC----CCCEEEEEEEEC-CCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEC---CCCCEEEE
Q ss_conf             798761222331----865269999207-9889999389839999923662689960599970038987---89969999
Q 002564          503 FKGRDLKSRWEV----GCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS---EDGKWLLS  574 (907)
Q Consensus       503 ~~~~~~~~~~~~----~~~i~~i~~s~~-~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fs---pdg~~l~s  574 (907)
                      ....+.......    ...+.+++|+|+ +.++++++.|+.|++||+.+++.+..+.+|..++..+.|+   ||+++|++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s  268 (325)
T d1pgua1         189 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT  268 (325)
T ss_dssp             TTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred             CCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEE
T ss_conf             22110000000015777752776303453100001123321013430012221111111111111000000368999999


Q ss_pred             EECCCCEEEEECCCCCEEEEEEECCC---EEEEEECCC-CCEEEEEEECCCEEEEEEC
Q ss_conf             91898199997697741267640872---579997789-7637998736974999644
Q 002564          575 SGMDGSLRIWDVILARQIDAIHVDVS---ITALSLSPN-MDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       575 ~s~Dg~I~iwd~~~~~~i~~~~~~~~---v~~l~~spd-g~~lat~~~d~~~i~iW~~  628 (907)
                      ++.|+.|++||+.+++++..+..+..   +..+++.+. +.+|++++.|+ .|++|++
T Consensus       269 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-~i~vwdl  325 (325)
T d1pgua1         269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG-TLNFYEL  325 (325)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS-CEEEEET
T ss_pred             EECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCC-EEEEEEC
T ss_conf             95899399999999978899995487406769999988999999997999-9999979

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-33  Score=224.53  Aligned_cols=285  Identities=18%  Similarity=0.235  Sum_probs=173.8

Q ss_pred             CCEEEEEECCCCCEEEEEECCC-EEEEEECCCC--CEEEEEEECCCCCEEEEEEEC--CCCCEEEEEECCCCEEEEECCC
Q ss_conf             9879999969998999995699-4999991089--148999406997789999801--9999799994998499998898
Q 002564          182 SSISSCVSSPALDVVAVGCSDG-KIHVHNVRYD--EELVTFTHSMRGAVTALAFSS--DGQPLLASGASSGVISIWNLEK  256 (907)
Q Consensus       182 ~~I~~l~~sp~~~~la~g~~dg-~I~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~--dg~~~l~sg~~dg~I~iwd~~~  256 (907)
                      ..+++++|+|+++.+++++.+. .|+.|+....  .....+..|+...|++++|+|  ++. ++++|+.||+|++||+..
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~-~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCC-EEEEEECCCCEEEEEECC
T ss_conf             9847999989979999996998799997688887650289907899988999981179997-999994899779854058


Q ss_pred             CEEEEEEE-------CCCCCCEEEEEEECCCCEEEEECC--CCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCC
Q ss_conf             60212341-------243468389999559999999839--996799990379998612474148899996899934998
Q 002564          257 RRLQSVIR-------EAHDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR  327 (907)
Q Consensus       257 ~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~  327 (907)
                      ++....+.       ..|.++|.+++|++++..+++++.  ++.+++|+.+..    ..+..+.+|...+.++.|+|++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~  172 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG----NSLGEVSGHSQRINACHLKQSRP  172 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC----CEEEECCSCSSCEEEEEECSSSS
T ss_pred             CCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCC----CCCEEEEECCCCCCCCCCCCCCC
T ss_conf             86215651002541136567377999899988220100124404788850233----11001200123432111123432


Q ss_pred             E-EEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEE
Q ss_conf             9-999948997799980202432142024566988510200221046833486402211345430289860996099999
Q 002564          328 H-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR  406 (907)
Q Consensus       328 ~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~  406 (907)
                      . +++++.|+.+++|+....+....                                                       
T Consensus       173 ~~~~~~~~d~~v~~~d~~~~~~~~~-------------------------------------------------------  197 (325)
T d1pgua1         173 MRSMTVGDDGSVVFYQGPPFKFSAS-------------------------------------------------------  197 (325)
T ss_dssp             CEEEEEETTTEEEEEETTTBEEEEE-------------------------------------------------------
T ss_pred             CEEEEEECCCCCCCCCCCCCCCCEE-------------------------------------------------------
T ss_conf             0688862111221111221100000-------------------------------------------------------


Q ss_pred             EEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCC-
Q ss_conf             0101104243205999998649999967998999994799199996888951014406662235676775799999599-
Q 002564          407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-  485 (907)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-  485 (907)
                                                                             ..     ....|...|.+++|+|+ 
T Consensus       198 -------------------------------------------------------~~-----~~~~~~~~v~~v~~~pd~  217 (325)
T d1pgua1         198 -------------------------------------------------------DR-----THHKQGSFVRDVEFSPDS  217 (325)
T ss_dssp             -------------------------------------------------------EC-----SSSCTTCCEEEEEECSTT
T ss_pred             -------------------------------------------------------CC-----CCCCCCCCCEEEEECCCC
T ss_conf             -------------------------------------------------------00-----015777752776303453


Q ss_pred             CCEEEEEECCCEEEEEECCCCCEEEEEECC-CCEEEEEEE---ECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCE-
Q ss_conf             998999956770999987987612223318-652699992---079889999389839999923662689960599970-
Q 002564          486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYH---RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI-  560 (907)
Q Consensus       486 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~s---~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I-  560 (907)
                      +.++++++.|+.|++||+.+++.+..+..+ .++..+.|+   +++++|++++.|+.|++||+.++++++.+..|...+ 
T Consensus       218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~  297 (325)
T d1pgua1         218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG  297 (325)
T ss_dssp             CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred             CEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf             10000112332101343001222111111111111100000036899999995899399999999978899995487406


Q ss_pred             -EEEEECCC-CCEEEEEECCCCEEEEEC
Q ss_conf             -03898789-969999918981999976
Q 002564          561 -TDFCFSED-GKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       561 -~~i~fspd-g~~l~s~s~Dg~I~iwd~  586 (907)
                       ..+++.+. +.+|++++.||.|++||+
T Consensus       298 ~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         298 NQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf             7699999889999999979999999979

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-32  Score=220.53  Aligned_cols=148  Identities=15%  Similarity=0.163  Sum_probs=88.7

Q ss_pred             CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC---EEE
Q ss_conf             99864999996799899999479919999688895101440666223567677579999959999899995677---099
Q 002564          423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG---DIK  499 (907)
Q Consensus       423 ~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg---~i~  499 (907)
                      +...+.+++++|++ ++++|+.||.|++||+.++.....+...  ....+|..+|.+++|+|++++|++++.|+   .|+
T Consensus       183 ~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~--~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~  259 (393)
T d1sq9a_         183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT  259 (393)
T ss_dssp             SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEE
T ss_conf             89867899978999-8999938982999860233211000011--11124256387700466532011242898842100


Q ss_pred             EEECCCCCEEEEEE--------------CCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEE----
Q ss_conf             99879876122233--------------186526999920798899993898399999236626899605999700----
Q 002564          500 VWDFKGRDLKSRWE--------------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT----  561 (907)
Q Consensus       500 iwd~~~~~~~~~~~--------------~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~----  561 (907)
                      +||+.+++.+..+.              |...|++++|+|++++|++++.|+.|++||+.+++++.++.+|.+.|.    
T Consensus       260 lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~  339 (393)
T d1sq9a_         260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED  339 (393)
T ss_dssp             EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG
T ss_pred             ECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCC
T ss_conf             10353213444311566664310232023586660013898880698779998999999999799999886876137734


Q ss_pred             EEEECCCCCEEE
Q ss_conf             389878996999
Q 002564          562 DFCFSEDGKWLL  573 (907)
Q Consensus       562 ~i~fspdg~~l~  573 (907)
                      .++|+|++..++
T Consensus       340 ~~~~~~~~~~~~  351 (393)
T d1sq9a_         340 ILAVDEHGDSLA  351 (393)
T ss_dssp             CCCBCTTSCBCS
T ss_pred             EEEECCCCCEEE
T ss_conf             899999999999

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.6e-33  Score=222.25  Aligned_cols=314  Identities=13%  Similarity=0.097  Sum_probs=182.8

Q ss_pred             EEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--ECCCCCEEEEEEECCCCCEEEEEECCCCE
Q ss_conf             1999992899987999996999899999569949999910891489994--06997789999801999979999499849
Q 002564          172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAFSSDGQPLLASGASSGVI  249 (907)
Q Consensus       172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~--~~~~~~v~~l~fs~dg~~~l~sg~~dg~I  249 (907)
                      +.++..++|...|++++|+|++++||+|+.||.|++||+..+.....+.  ..|.++|.+++|++++..++++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCE
T ss_conf             75976889989788899958999999997999299997569986368988558999889999958999789981265311


Q ss_pred             EEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCC--CCCEEEEEECCCC
Q ss_conf             99988986021234124346838999955999999983999679999037999861247414889--9996899934998
Q 002564          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS--APPLCIRFYANGR  327 (907)
Q Consensus       250 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~--~~v~~i~~~~~g~  327 (907)
                      ++|++............+........+.++...+++++.|+.+++|++...............+.  .......+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCC
T ss_conf             45420443200000111111111111111111111101222111020234443302300024300120000010001687


Q ss_pred             EEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf             99999489977999802024321420245669885102002210468334864022113454302898609960999990
Q 002564          328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL  407 (907)
Q Consensus       328 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~  407 (907)
                      .+++++.|+.+++|++                                                                
T Consensus       162 ~~~~~~~d~~i~~~~~----------------------------------------------------------------  177 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRL----------------------------------------------------------------  177 (342)
T ss_dssp             EEEEEESTTEEEEEES----------------------------------------------------------------
T ss_pred             CEEEECCCCCEEEEEC----------------------------------------------------------------
T ss_conf             0246517984788760----------------------------------------------------------------


Q ss_pred             EECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEEC-CCC
Q ss_conf             1011042432059999986499999679989999947991999968889510144066622356767757999995-999
Q 002564          408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD-STN  486 (907)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~-~~~  486 (907)
                                                                    ...........     ...+...+.+..+. .++
T Consensus       178 ----------------------------------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         178 ----------------------------------------------PLCEDDNGTIE-----ESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             ----------------------------------------------SCCTTCCCEEE-----ECSCSSCEEEEEECSGGG
T ss_pred             ----------------------------------------------CCCCCCCEEEE-----ECCCCCCEEEEEEECCCC
T ss_conf             ----------------------------------------------56763411121-----025422101467636999


Q ss_pred             CEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEC
Q ss_conf             98999956770999987987612223318652699992079889999389839999923662689960599970038987
Q 002564          487 TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS  566 (907)
Q Consensus       487 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fs  566 (907)
                      ..+++++.||.+.+|++..............                        +  ...+......+|...+++++|+
T Consensus       207 ~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~------------------------~--~~~~~~~~~~~~~~~v~~l~~s  260 (342)
T d1yfqa_         207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFA------------------------F--RCHRLNLKDTNLAYPVNSIEFS  260 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCEE------------------------E--ECCCCCTTCCSSCCCEEEEEEC
T ss_pred             CEEEEECCCCEEEEEEECCCCCEEECCCCCE------------------------E--EEEEECCCCCCCCCCCEEEEEC
T ss_conf             8788654899599998059864011123512------------------------5--6555314777623543159966


Q ss_pred             CCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCEEEEEE
Q ss_conf             8996999991898199997697741267640872579997789763799873697499964
Q 002564          567 EDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV  627 (907)
Q Consensus       567 pdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~iW~  627 (907)
                      |++++|++|+.||.|++||+.+++.+..+..+.....++|+|+|+++++++.|+ ++++|.
T Consensus       261 p~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd-~~~~~~  320 (342)
T d1yfqa_         261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD-TFKTNA  320 (342)
T ss_dssp             TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECT-HHHHCS
T ss_pred             CCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCC-CEEEEE
T ss_conf             984479998799989999999894988705899987999994799999999199-278830

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-33  Score=223.60  Aligned_cols=146  Identities=21%  Similarity=0.348  Sum_probs=103.6

Q ss_pred             CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-------CCCCEEEEEEEECCCEEEEEECCC---EEEE
Q ss_conf             767757999995999989999567709999879876122233-------186526999920798899993898---3999
Q 002564          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-------VGCSLVKIVYHRVNGLLATVADDL---VIRL  541 (907)
Q Consensus       472 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~i~~i~~s~~~~~la~~~~dg---~i~i  541 (907)
                      .+...+.+++|+|++ ++++++.||.|++||+.+++.+..+.       +..+|.+++|+|++++|++++.|+   .|++
T Consensus       182 ~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~l  260 (393)
T d1sq9a_         182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL  260 (393)
T ss_dssp             SSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE
T ss_pred             CCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEE
T ss_conf             789867899978999-8999938982999860233211000011111242563877004665320112428988421001


Q ss_pred             EECCCCEEEEEEE-------------CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCC-E----EE
Q ss_conf             9923662689960-------------5999700389878996999991898199997697741267640872-5----79
Q 002564          542 FDVVALRMVRKFE-------------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-I----TA  603 (907)
Q Consensus       542 ~d~~~~~~~~~~~-------------~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v----~~  603 (907)
                      ||+.+++++..+.             +|.+.|++++|+||+++|++++.|++|++||+.+++++..+++|.. |    ..
T Consensus       261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~  340 (393)
T d1sq9a_         261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI  340 (393)
T ss_dssp             EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGC
T ss_pred             CCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCE
T ss_conf             03532134443115666643102320235866600138988806987799989999999997999998868761377348


Q ss_pred             EEECCCCCEEEEEEE
Q ss_conf             997789763799873
Q 002564          604 LSLSPNMDVLATAHV  618 (907)
Q Consensus       604 l~~spdg~~lat~~~  618 (907)
                      ++|+|++..+++++.
T Consensus       341 ~~~~~~~~~~~~~~~  355 (393)
T d1sq9a_         341 LAVDEHGDSLAEPGV  355 (393)
T ss_dssp             CCBCTTSCBCSSCCE
T ss_pred             EEECCCCCEEEECCC
T ss_conf             999999999998312

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-33  Score=223.96  Aligned_cols=305  Identities=11%  Similarity=0.108  Sum_probs=198.9

Q ss_pred             EECCCCCCCEEEECCCCCCCEEEEEECCCCEEEEECCCCEE---EEEECCCCCCEEEEEECCCC-CEEEEEECCCEEEEE
Q ss_conf             96289755289982899978999996688099996689919---99992899987999996999-899999569949999
Q 002564          133 VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK---LYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVH  208 (907)
Q Consensus       133 ~~~~~~~~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~~~---~~~~~~h~~~I~~l~~sp~~-~~la~g~~dg~I~iw  208 (907)
                      .+.|...+..+.|+|++  ++|++|+.||+|++||+.++..   +....+|..+|.+++|+|++ .++++|+.||.|++|
T Consensus         7 ~~~h~d~I~~l~fsp~~--~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSK--SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             SSCCSSCEEEEEEEGGG--TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             CCCCCCCEEEEEEECCC--CEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCEEEE
T ss_conf             88998978889995899--9999997999299997569986368988558999889999958999789981265311454


Q ss_pred             ECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEEC---C--CCCCEEEEEEECCCCEE
Q ss_conf             910891489994069977899998019999799994998499998898602123412---4--34683899995599999
Q 002564          209 NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE---A--HDNAIISLHFFANEPVL  283 (907)
Q Consensus       209 d~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~---~--h~~~V~~l~~~~~~~~l  283 (907)
                      +............++........+.++.. .+++++.++.+++||++..........   .  .........+.+++..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCE
T ss_conf             20443200000111111111111111111-11110122211102023444330230002430012000001000168702


Q ss_pred             EEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHH
Q ss_conf             99839996799990379998612474148899996899934-99899999489977999802024321420245669885
Q 002564          284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR  362 (907)
Q Consensus       284 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  362 (907)
                      ++++.|+.+++|++........... ...+.....+..+.+ ++..+++++.||.+.+|+............        
T Consensus       164 ~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~--------  234 (342)
T d1yfqa_         164 IVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK--------  234 (342)
T ss_dssp             EEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT--------
T ss_pred             EEECCCCCEEEEECCCCCCCCEEEE-ECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCC--------
T ss_conf             4651798478876056763411121-0254221014676369998788654899599998059864011123--------


Q ss_pred             HCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf             10200221046833486402211345430289860996099999010110424320599999864999996799899999
Q 002564          363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG  442 (907)
Q Consensus       363 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  442 (907)
                                                                                      ..              
T Consensus       235 ----------------------------------------------------------------~~--------------  236 (342)
T d1yfqa_         235 ----------------------------------------------------------------RF--------------  236 (342)
T ss_dssp             ----------------------------------------------------------------CE--------------
T ss_pred             ----------------------------------------------------------------CC--------------
T ss_conf             ----------------------------------------------------------------51--------------


Q ss_pred             ECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             47991999968889510144066622356767757999995999989999567709999879876122233186526999
Q 002564          443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIV  522 (907)
Q Consensus       443 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~  522 (907)
                             .+.....  ..        ....|...+++++|+|++++|++++.||.|++||+.+++.+..+........++
T Consensus       237 -------~~~~~~~--~~--------~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~  299 (342)
T d1yfqa_         237 -------AFRCHRL--NL--------KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVK  299 (342)
T ss_dssp             -------EEECCCC--CT--------TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEE
T ss_pred             -------EEEEEEE--CC--------CCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEE
T ss_conf             -------2565553--14--------777623543159966984479998799989999999894988705899987999


Q ss_pred             EEECCCEEEEEECCCEEEEEEC
Q ss_conf             9207988999938983999992
Q 002564          523 YHRVNGLLATVADDLVIRLFDV  544 (907)
Q Consensus       523 ~s~~~~~la~~~~dg~i~i~d~  544 (907)
                      ++++++++++++.|..+++|..
T Consensus       300 ~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         300 IACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEECSSEEEEEEECTHHHHCSS
T ss_pred             EEECCCEEEEEECCCCEEEEEE
T ss_conf             9947999999991992788301

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=6e-32  Score=216.52  Aligned_cols=367  Identities=8%  Similarity=-0.025  Sum_probs=259.2

Q ss_pred             EEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE--EEEEEE--CCCCCEE
Q ss_conf             999996688099996689919999928999879999969998999995699499999108914--899940--6997789
Q 002564          153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE--LVTFTH--SMRGAVT  228 (907)
Q Consensus       153 ~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~--~~~~~~--~~~~~v~  228 (907)
                      .+++.+.+|+|.+||..+++++..+..+ ..+..++|||||+++++++.||.+.+||+.+++.  ...+..  .+.+.+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEE
T ss_conf             9999769997999989998399997379-971379988999999998289997899810898128899844889877698


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEEC----------CCCCCEEEEEEECCCCEE-EEECCCCCEEEEEC
Q ss_conf             9998019999799994998499998898602123412----------434683899995599999-99839996799990
Q 002564          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE----------AHDNAIISLHFFANEPVL-MSASADNSIKMWIF  297 (907)
Q Consensus       229 ~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~----------~h~~~V~~l~~~~~~~~l-~s~~~d~~i~iw~~  297 (907)
                      +..|+|||+.+++++..++.+++||..+++++..+..          .+......+.+++++..+ ++...++.+.+|+.
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~  192 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY  192 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred             ECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf             43218888889998178982799907655422540247764352201688850589987899989999816882999984


Q ss_pred             CCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECC-CCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCE
Q ss_conf             37999861247414889999689993499899999489-97799980202432142024566988510200221046833
Q 002564          298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD-RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV  376 (907)
Q Consensus       298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  376 (907)
                      .....  ..+... .+...+..+.|+|+|+++++++.+ +.+.+++....+....+..+.                    
T Consensus       193 ~~~~~--~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~--------------------  249 (432)
T d1qksa2         193 TDLNN--LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG--------------------  249 (432)
T ss_dssp             TCSSE--EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS--------------------
T ss_pred             CCCCC--CEEEEE-CCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCC--------------------
T ss_conf             37875--227998-3367542653889887999951666367776144526888721486--------------------


Q ss_pred             EEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCC
Q ss_conf             4864022113454302898609960999990101104243205999998649999967998999994-799199996888
Q 002564          377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQS  455 (907)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~i~~~~~  455 (907)
                                                                 ...+............+....... .++.+.+|....
T Consensus       250 -------------------------------------------~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         250 -------------------------------------------QTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             -------------------------------------------SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             -------------------------------------------CCCCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCC
T ss_conf             -------------------------------------------2245676641014898831021356883587624566


Q ss_pred             CCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEEC
Q ss_conf             95101440666223567677579999959999899995677099998798761222331865269999207988999938
Q 002564          456 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD  535 (907)
Q Consensus       456 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~  535 (907)
                      ...            ..|...+....+++++..+++++.+...++|.........     .....+++ ||++.+++++.
T Consensus       287 ~~~------------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~-----~~~~sv~v-pDg~~la~~s~  348 (432)
T d1qksa2         287 EGH------------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA-----EISGSVAV-FDIKAMTGDGS  348 (432)
T ss_dssp             TTC------------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH-----HHHTCEEE-EEGGGCCCSSS
T ss_pred             CCC------------CCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCC-----CEEEEEEE-EECHHHCCCCC
T ss_conf             555------------4656577799886899768887268864102112678887-----70359999-96246104556


Q ss_pred             CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEEEECCCEEEEEECCCC
Q ss_conf             98399999236626899605999700389878996999991-----8981999976977412676408725799977897
Q 002564          536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG-----MDGSLRIWDVILARQIDAIHVDVSITALSLSPNM  610 (907)
Q Consensus       536 dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s-----~Dg~I~iwd~~~~~~i~~~~~~~~v~~l~~spdg  610 (907)
                      |+.+++|++.++..   +..|...+.+++|||||++++.+.     .++.|.|||..++++...+....     .++|+|
T Consensus       349 d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~-----~~tp~G  420 (432)
T d1qksa2         349 DPEFKTLPIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDER-----LVTPTG  420 (432)
T ss_dssp             CCCEEEECHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT-----CCSEEE
T ss_pred             CCCEEECCCCCCCC---CCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECCCC-----CCCCCE
T ss_conf             78448633434444---5789986897679899999999970488888868999999955886846888-----408970


Q ss_pred             CE
Q ss_conf             63
Q 002564          611 DV  612 (907)
Q Consensus       611 ~~  612 (907)
                      .|
T Consensus       421 ~~  422 (432)
T d1qksa2         421 KF  422 (432)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             67

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-32  Score=217.92  Aligned_cols=282  Identities=15%  Similarity=0.170  Sum_probs=194.5

Q ss_pred             CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf             91999992899987999996999899999569949999910891489994069977899998019999799994998499
Q 002564          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (907)
Q Consensus       171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~  250 (907)
                      .++++++++|..+|++++|+|    |++|+.||.|++||+.++.      ..|...|.++.|++++.  +++++.|++++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~~~~--~~s~s~D~~v~   70 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH------QDHSNLIVSLDNSKAQE--YSSISWDDTLK   70 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE------CCCCSCEEEEECCSTTC--CEEEETTTEEE
T ss_pred             CCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCCC------CCCCCCEEEEEECCCCE--EEEEEECCCCC
T ss_conf             603499988798649999895----7898489919999899988------88778789999659972--89886101222


Q ss_pred             EEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEE
Q ss_conf             99889860212341243468389999559999999839996799990379998612474148899996899934998999
Q 002564          251 IWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL  330 (907)
Q Consensus       251 iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~  330 (907)
                      +|++...+        ....+..+.+.+++..++++. ++.+.+|+....    ........+ .  ...++.+++..++
T Consensus        71 ~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~-~--~~~~~~~~~~~~~  134 (287)
T d1pgua2          71 VNGITKHE--------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTG----DIIKSVRLN-S--PGSAVSLSQNYVA  134 (287)
T ss_dssp             ETTEEEEE--------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTC----CEEEEEECS-S--CEEEEEECSSEEE
T ss_pred             CCCCCCCC--------CCCCEEEEEECCCCCEEEEEE-CCCCEEEECCCE----EEEEECCCC-C--EEEEEECCCCCEE
T ss_conf             11111111--------122101466416785699960-332100001100----354310122-2--0356521475111


Q ss_pred             EEECCC-CEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEE
Q ss_conf             994899-7799980202432142024566988510200221046833486402211345430289860996099999010
Q 002564          331 SAGQDR-AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN  409 (907)
Q Consensus       331 s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~  409 (907)
                      +++.++ .+++|++........+                                                         
T Consensus       135 v~~~~~~~v~~~~~~~~~~~~~~---------------------------------------------------------  157 (287)
T d1pgua2         135 VGLEEGNTIQVFKLSDLEVSFDL---------------------------------------------------------  157 (287)
T ss_dssp             EEETTTSCEEEEETTEEEEEEEC---------------------------------------------------------
T ss_pred             EECCCCCEEEEEECCCCCEEEEE---------------------------------------------------------
T ss_conf             00022100021000122100012---------------------------------------------------------


Q ss_pred             CEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf             11042432059999986499999679989999947991999968889510144066622356767757999995999989
Q 002564          410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM  489 (907)
Q Consensus       410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  489 (907)
                                ...+...+++++|+|++.++++|+.+|.|++|++.++.......       .+|...|.+++|+|.+...
T Consensus       158 ----------~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         158 ----------KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW-------AFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             ----------SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS-------CCCSSCEEEEEECCCC---
T ss_pred             ----------EECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-------CCCCCCCCEEEECCCCCCC
T ss_conf             ----------10247853699951676521101111110000002332110001-------1111111000001365410


Q ss_pred             EEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCC-CEEEEEEECCCCCEEEEEECCC
Q ss_conf             999567709999879876122233186526999920798899993898399999236-6268996059997003898789
Q 002564          490 ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFEGHTDRITDFCFSED  568 (907)
Q Consensus       490 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~-~~~~~~~~~h~~~I~~i~fspd  568 (907)
                      .                               .+.+++.++++|+.|+.|++||+.+ .+.+..+.+|.+.|++++|+|+
T Consensus       221 ~-------------------------------~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~  269 (287)
T d1pgua2         221 N-------------------------------EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP  269 (287)
T ss_dssp             ----------------------------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred             C-------------------------------CCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC
T ss_conf             0-------------------------------126788702766499959998889997589992787898589999899


Q ss_pred             CCEEEEEECCCCEEEEEC
Q ss_conf             969999918981999976
Q 002564          569 GKWLLSSGMDGSLRIWDV  586 (907)
Q Consensus       569 g~~l~s~s~Dg~I~iwd~  586 (907)
                      + .|++++.|++|++|++
T Consensus       270 ~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         270 S-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             T-EEEEEETTSCEEEEEE
T ss_pred             C-EEEEEECCCEEEEEEE
T ss_conf             9-8999979992999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=6.9e-33  Score=222.52  Aligned_cols=189  Identities=12%  Similarity=0.085  Sum_probs=137.9

Q ss_pred             EEEECC-CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC--EEEEEECCCCCEEEE
Q ss_conf             899828-99978999996688099996689919999928999879999969998999995699--499999108914899
Q 002564          142 TCIMHP-DTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDG--KIHVHNVRYDEELVT  218 (907)
Q Consensus       142 ~~~~~p-~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg--~I~iwd~~~~~~~~~  218 (907)
                      ..-|+| ++  +++++++ .|.|++||...+..++.  +|...|.+++|+|+++.|++++.+.  .|++|+..+++.. .
T Consensus         7 ~~~fSP~dG--~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~   80 (360)
T d1k32a3           7 AEDFSPLDG--DLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-K   80 (360)
T ss_dssp             EEEEEECGG--GCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-E
T ss_pred             CCCCCCCCC--CEEEEEE-CCEEEEEECCCCCEEEC--CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-E
T ss_conf             051468899--9999998-99699998999948991--6999888899989999999999289989999989999488-7


Q ss_pred             EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEC----------C
Q ss_conf             940699778999980199997999949984999988986021234124346838999955999999983----------9
Q 002564          219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------A  288 (907)
Q Consensus       219 ~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~  288 (907)
                      +.. +...+.+++|+||++ ++++++.++.+.+|+..+++....+. .|...+.+++|+|++++|+.+.          .
T Consensus        81 ~~~-~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~  157 (360)
T d1k32a3          81 FEE-NLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSRFIAYGFPLKHGETDGYV  157 (360)
T ss_dssp             CCC-CCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred             EEC-CCCEEEEEEECCCCC-CCCEECCCCCCCCCCCCCCCEEEEEE-CCCCCCCCHHHCCCEEEEEEECCCCCCCEEECC
T ss_conf             508-971277412114543-21000111110000012221000000-135520230121322566521233121100025


Q ss_pred             CCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECE
Q ss_conf             99679999037999861247414889999689993499899999489977999802
Q 002564          289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI  344 (907)
Q Consensus       289 d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~  344 (907)
                      ++.+++|+....     .......+...+..+.|+|+|+.|++++.++.+.+|+..
T Consensus       158 ~~~~~v~d~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         158 MQAIHVYDMEGR-----KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             EEEEEEEETTTT-----EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             CCCEEEECCCCC-----CEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCC
T ss_conf             654266304557-----135303543221100125779999999599855753335

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-31  Score=210.03  Aligned_cols=211  Identities=11%  Similarity=0.111  Sum_probs=83.0

Q ss_pred             EEEEECCCCCCEEEEEEECCEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCEE
Q ss_conf             58997056554589976299899995588299995488876653212696289755289982899978999996688099
Q 002564           85 QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQ  164 (907)
Q Consensus        85 ~~~~~~~h~~~V~~l~~~g~~l~s~~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~gs~dg~i~  164 (907)
                      .++++.||..+|++++++.  |+|++.||+|++||+.++..         .|...+..+.++++.   .+++++.|++++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~~---------~h~~~V~~~~~~~~~---~~~s~s~D~~v~   70 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSMHQ---------DHSNLIVSLDNSKAQ---EYSSISWDDTLK   70 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEEEC---------CCCSCEEEEECCSTT---CCEEEETTTEEE
T ss_pred             EEEEECCCCCCEEEEEECC--EEEEECCCEEEEEECCCCCC---------CCCCCEEEEEECCCC---EEEEEEECCCCC
T ss_conf             3499988798649999895--78984899199998999888---------877878999965997---289886101222


Q ss_pred             EEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEE
Q ss_conf             99668991999992899987999996999899999569949999910891489994069977899998019999799994
Q 002564          165 LWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA  244 (907)
Q Consensus       165 iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~  244 (907)
                      +|++...+       ....+.++.+++++..++++ .++.+.+|+..+++.+..+...  ..+  .++++++. .+++++
T Consensus        71 ~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~-~~~v~~  137 (287)
T d1pgua2          71 VNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN--SPG--SAVSLSQN-YVAVGL  137 (287)
T ss_dssp             ETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS--SCE--EEEEECSS-EEEEEE
T ss_pred             CCCCCCCC-------CCCCEEEEEECCCCCEEEEE-ECCCCEEEECCCEEEEEECCCC--CEE--EEEECCCC-CEEEEC
T ss_conf             11111111-------12210146641678569996-0332100001100354310122--203--56521475-111000


Q ss_pred             CC-CCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEE
Q ss_conf             99-84999988986021234124346838999955999999983999679999037999861247414889999689993
Q 002564          245 SS-GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY  323 (907)
Q Consensus       245 ~d-g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~  323 (907)
                      .+ +.+++|++........+...|...+++++|+|++.+|++++.|+.|++|++....   .......+|..+|.+++|+
T Consensus       138 ~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~~h~~~v~~~~~~  214 (287)
T d1pgua2         138 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE---VKTSRWAFRTSKINAISWK  214 (287)
T ss_dssp             TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEECCSCCCSSCEEEEEEC
T ss_pred             CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCC---CCCCCCCCCCCCCCEEEEC
T ss_conf             2210002100012210001210247853699951676521101111110000002332---1100011111111000001


Q ss_pred             CC
Q ss_conf             49
Q 002564          324 AN  325 (907)
Q Consensus       324 ~~  325 (907)
                      |.
T Consensus       215 p~  216 (287)
T d1pgua2         215 PA  216 (287)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             36

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=3.9e-30  Score=204.87  Aligned_cols=149  Identities=11%  Similarity=0.018  Sum_probs=107.9

Q ss_pred             ECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--E-
Q ss_conf             8289997899999668809999668991999992899987999996999899999569949999910891489994--0-
Q 002564          145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT--H-  221 (907)
Q Consensus       145 ~~p~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~--~-  221 (907)
                      +..+.....+++.+.+|+|++||..+++++.++..+ ..+..++|||||+++++++.|+.+++||+.+++......  . 
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             CCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECC
T ss_conf             167987089999759997999999999599999689-9803899989999999995899889997568860489998678


Q ss_pred             -CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCE-EEEECCCCCEEEE
Q ss_conf             -6997789999801999979999499849999889860212341243468389999559999-9998399967999
Q 002564          222 -SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV-LMSASADNSIKMW  295 (907)
Q Consensus       222 -~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~i~iw  295 (907)
                       .+.+.+.+++|+|||+.+++++..++.+.+||..++.+..... .|...+....+.+++.. .+..+.|+...++
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~  179 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  179 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE-CCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEE-CCCCCCCCEEECCCCCEEEEEECCCCCEEEE
T ss_conf             88764588500268898799963589769998577641257862-2677736436427885038998787878888

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-29  Score=200.34  Aligned_cols=109  Identities=25%  Similarity=0.356  Sum_probs=55.0

Q ss_pred             CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCC-----
Q ss_conf             767757999995999989999567709999879876122233186526999920798899993898399999236-----
Q 002564          472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-----  546 (907)
Q Consensus       472 ~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~-----  546 (907)
                      ++...+..+.++  +..+++++.||.|++||+.+...+.......... ..+++++.++++++.|+.|++||+.+     
T Consensus       176 ~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  252 (293)
T d1p22a2         176 GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV-RCIRFDNKRIVSGAYDGKIKVWDLVAALDPR  252 (293)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCE-EEEECCSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred             CCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCEEE-EECCCCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf             554453221689--8758876589989998665561466521431000-0014541079998679979999888886444


Q ss_pred             ----CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             ----626899605999700389878996999991898199997
Q 002564          547 ----LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD  585 (907)
Q Consensus       547 ----~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd  585 (907)
                          ...+..+.+|.+.|++++|  ++++|++++.||+|++||
T Consensus       253 ~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         253 APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             CCCCCEEEEEECCCCCCEEEEEE--CCCEEEEEECCCEEEEEC
T ss_conf             56775455784588998899997--199999992299899959

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=2.1e-31  Score=213.02  Aligned_cols=351  Identities=10%  Similarity=-0.001  Sum_probs=186.3

Q ss_pred             EEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCEEEEECCCCE--EEEEEC---CC
Q ss_conf             9999558829999548887665321269628975528998289997899999668809999668991--999992---89
Q 002564          106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFK---GW  180 (907)
Q Consensus       106 l~s~~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~~--~~~~~~---~h  180 (907)
                      +++.+.+|+|.+||..+++.    +..+..+. ....++|+||+  +++++++.|+.+.+||+.+++  .+..++   +|
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v----~~~~~~g~-~~~~v~fSpDG--~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEI----KTVLDTGY-AVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCE----EEEEECSS-CEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             EEEECCCCEEEEEECCCCCE----EEEEECCC-CEEEEEECCCC--CEEEEECCCCCEEEEEEECCCCEEEEEEECCCCC
T ss_conf             99976999799998999839----99973799-71379988999--9999982899978998108981288998448898


Q ss_pred             CCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEEEEEEC----------CCCCEEEEEEECCCCCEEEEEECCCCE
Q ss_conf             9987999996999899-99956994999991089148999406----------997789999801999979999499849
Q 002564          181 GSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFTHS----------MRGAVTALAFSSDGQPLLASGASSGVI  249 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~l-a~g~~dg~I~iwd~~~~~~~~~~~~~----------~~~~v~~l~fs~dg~~~l~sg~~dg~I  249 (907)
                      .+.+.+..|+|||++| +++..++.+++||..+++.+..+..+          +.+...++.+++++..++++...++.|
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf             77698432188888899981789827999076554225402477643522016888505899878999899998168829


Q ss_pred             EEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECC-CCCEEEEECCCCCCCCCEEEEC-----CCCCCCCEEEEEE
Q ss_conf             999889860212341243468389999559999999839-9967999903799986124741-----4889999689993
Q 002564          250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFR-----SGHSAPPLCIRFY  323 (907)
Q Consensus       250 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~-----~~h~~~v~~i~~~  323 (907)
                      .+|+..+.+........+...+..+.|+|+++++++++. ++.+.+++.+..    ......     ..|........+.
T Consensus       188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~----~~~~~~~~g~~~~~~~~~~~~~~~  263 (432)
T d1qksa2         188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG----KLVAIEDTGGQTPHPGRGANFVHP  263 (432)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEEECSSSSBCCTTCEEEEET
T ss_pred             EEEECCCCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCC----EEEEEECCCCCCCCCCCCCCEECC
T ss_conf             9998437875227998336754265388988799995166636777614452----688872148622456766410148


Q ss_pred             CCCCEEEEEE-CCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEE
Q ss_conf             4998999994-899779998020243214202456698851020022104683348640221134543028986099609
Q 002564          324 ANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA  402 (907)
Q Consensus       324 ~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i  402 (907)
                      ..+....+.. .++.+.+|......                                                       
T Consensus       264 ~~g~~~~~~~lg~~~v~~~~~~~~~-------------------------------------------------------  288 (432)
T d1qksa2         264 TFGPVWATSHMGDDSVALIGTDPEG-------------------------------------------------------  288 (432)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCTTT-------------------------------------------------------
T ss_pred             CCCCEECCCCCCCCEEEECCCCCCC-------------------------------------------------------
T ss_conf             9883102135688358762456655-------------------------------------------------------


Q ss_pred             EEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf             99990101104243205999998649999967998999994799199996888951014406662235676775799999
Q 002564          403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC  482 (907)
Q Consensus       403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~  482 (907)
                                       ...+...+....+++++..+++++.+...++|......              .|......+++
T Consensus       289 -----------------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~--------------~~~~~~~sv~v  337 (432)
T d1qksa2         289 -----------------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN--------------PEAEISGSVAV  337 (432)
T ss_dssp             -----------------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC--------------SSHHHHTCEEE
T ss_pred             -----------------CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCC--------------CCCCEEEEEEE
T ss_conf             -----------------54656577799886899768887268864102112678--------------88770359999


Q ss_pred             CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEE-----CCCEEEEEECCCCEEEEEEECC
Q ss_conf             5999989999567709999879876122233186526999920798899993-----8983999992366268996059
Q 002564          483 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA-----DDLVIRLFDVVALRMVRKFEGH  556 (907)
Q Consensus       483 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~-----~dg~i~i~d~~~~~~~~~~~~h  556 (907)
                       |+++.+++++.|+.+++|++.++..+  .+++..+.+++|+|||++++++.     .++.|.|||..++++...+.+.
T Consensus       338 -pDg~~la~~s~d~~~k~w~~~~~~~l--~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         338 -FDIKAMTGDGSDPEFKTLPIAEWAGI--TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             -EEGGGCCCSSSCCCEEEECHHHHHTC--CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             -EECHHHCCCCCCCCEEECCCCCCCCC--CCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECCC
T ss_conf             -96246104556784486334344445--78998689767989999999997048888886899999995588684688

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-29  Score=201.85  Aligned_cols=192  Identities=19%  Similarity=0.307  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEEECCEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCEEEEECCC
Q ss_conf             56554589976299899995588299995488876653212696289755289982899978999996688099996689
Q 002564           91 RHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST  170 (907)
Q Consensus        91 ~h~~~V~~l~~~g~~l~s~~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~  170 (907)
                      +|...|+|+.++|++|+|++.||+|++||+.+++.    +.++..|...+..+  ++++  +++++|+.|+.+++|++..
T Consensus        13 ~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~----~~~l~~H~~~V~~v--~~~~--~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          13 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC----KRILTGHTGSVLCL--QYDE--RVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             SSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCE----EEEECCCSSCEEEE--ECCS--SEEEEEETTSCEEEEESSS
T ss_pred             CCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCE----EEEEECCCCCEEEE--ECCC--CEEECCCCCCCCCCCCCCC
T ss_conf             99998899987699999992899399999999919----99992677877634--2363--0021001110110000024


Q ss_pred             CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE--EEECCCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf             919999928999879999969998999995699499999108914899--940699778999980199997999949984
Q 002564          171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT--FTHSMRGAVTALAFSSDGQPLLASGASSGV  248 (907)
Q Consensus       171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~--~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~  248 (907)
                      +........+......  +.+....++++..++.+.+|+.........  ....+...+.++.+.++   .+++++.|+.
T Consensus        85 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~~  159 (293)
T d1p22a2          85 GEMLNTLIHHCEAVLH--LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRT  159 (293)
T ss_dssp             CCEEEEECCCCSCEEE--EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTSE
T ss_pred             CCCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCC---CCCCCCCCCC
T ss_conf             6410011111100001--1111100000135663068613445444212100011354311000002---2011069986


Q ss_pred             EEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf             99998898602123412434683899995599999998399967999903
Q 002564          249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD  298 (907)
Q Consensus       249 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~  298 (907)
                      +++||..+++.+..+. ++...+..+.+.  +..+++++.|+.|++|++.
T Consensus       160 i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~  206 (293)
T d1p22a2         160 IKVWNTSTCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE  206 (293)
T ss_dssp             EEEEETTTCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             EEEECCCCCCEEEEEC-CCCCCCCCCCCC--CCEEEEECCCCEEEEEECC
T ss_conf             0410078883889971-554453221689--8758876589989998665

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.3e-30  Score=207.94  Aligned_cols=141  Identities=11%  Similarity=-0.009  Sum_probs=93.5

Q ss_pred             EEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE----CCCCCC
Q ss_conf             9999956994999991089148999406997789999801999979999499849999889860212341----243468
Q 002564          195 VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR----EAHDNA  270 (907)
Q Consensus       195 ~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~----~~h~~~  270 (907)
                      ++++...||.|++||+.+++.+.++..+  ..+..++|+|||+ ++++++.|+.+++||+.+++......    .+|.+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g--~~~~~vafSPDGk-~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTG--YAVHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECC--SSEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCCEEEEEECC--CCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCE
T ss_conf             9999759997999999999599999689--9803899989999-999995899889997568860489998678887645


Q ss_pred             EEEEEEECCCCEEEEE-CCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCE-EEEEECCCCEEEEE
Q ss_conf             3899995599999998-399967999903799986124741488999968999349989-99994899779998
Q 002564          271 IISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRAFRLFS  342 (907)
Q Consensus       271 V~~l~~~~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~-l~s~~~dg~i~iwd  342 (907)
                      +.++.|+||+++++++ ..++.+++|+....    .......+|...+....+.+++.. .+..+.|+...++.
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~  180 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETL----EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  180 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTC----CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCCC----CEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEE
T ss_conf             8850026889879996358976999857764----125786226777364364278850389987878788885

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=6.1e-31  Score=210.08  Aligned_cols=136  Identities=13%  Similarity=0.056  Sum_probs=77.9

Q ss_pred             EEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEE-CC-CCEEEEECCCCEEEEEE
Q ss_conf             99969-99899999569949999910891489994069977899998019999799994-99-84999988986021234
Q 002564          187 CVSSP-ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA-SS-GVISIWNLEKRRLQSVI  263 (907)
Q Consensus       187 l~~sp-~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~-~d-g~I~iwd~~~~~~~~~~  263 (907)
                      -.||| ||+++|+++. |.|.+|++..+.... +  .|...|.+++|+|||+ .|++++ .+ ..|++||..+++.....
T Consensus         8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spDg~-~l~~~~~~~g~~v~v~d~~~~~~~~~~   82 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGDTK-VAFIHGTREGDFLGIYDYRTGKAEKFE   82 (360)
T ss_dssp             EEEEECGGGCEEEEET-TEEEEECTTSSBEEE-C--SCCSCEEEEEECSSSE-EEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred             CCCCCCCCCEEEEEEC-CEEEEEECCCCCEEE-C--CCCCCEEEEEECCCCC-EEEEEECCCCCEEEEEECCCCCEEEEE
T ss_conf             5146889999999989-969999899994899-1--6999888899989999-999999289989999989999488750


Q ss_pred             ECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf             1243468389999559999999839996799990379998612474148899996899934998999994
Q 002564          264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG  333 (907)
Q Consensus       264 ~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~  333 (907)
                        .|...+.+++|+|+++++++++.++.+++|+.+..    ........|...+.+++|+|+|++++.+.
T Consensus        83 --~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3          83 --ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG----KPTVIERSREAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             --CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred             --CCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCC----CEEEEEECCCCCCCCHHHCCCEEEEEEEC
T ss_conf             --89712774121145432100011111000001222----10000001355202301213225665212

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=1.3e-24  Score=169.63  Aligned_cols=170  Identities=15%  Similarity=0.230  Sum_probs=83.7

Q ss_pred             EEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEC
Q ss_conf             996688099996689919999928999879999969998999-9956994999991089148999406997789999801
Q 002564          156 VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVA-VGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS  234 (907)
Q Consensus       156 ~gs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la-~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~  234 (907)
                      +++.+++|.+||+++++.+.++.. ......++++|+|++|+ ++..++.|.+||+.+++.+..+..+  ..+..+.|++
T Consensus         7 ~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~--~~~~~~~~~~   83 (301)
T d1l0qa2           7 ANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--SSPQGVAVSP   83 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSEEEEEECT
T ss_pred             EECCCCEEEEEECCCCEEEEEEEC-CCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECC--CCCCCCCCCC
T ss_conf             978999899999999959999988-9983699992898999999789998999999989410320002--4643110001


Q ss_pred             CCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEE-EECCCCCEEEEECCCCCCCCCEEEECCCC
Q ss_conf             99997999949984999988986021234124346838999955999999-98399967999903799986124741488
Q 002564          235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGH  313 (907)
Q Consensus       235 dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~h  313 (907)
                      ++..+++++..++.+.+|+..+++....+.  +.....++.|+|++..++ ++..++.+.+|+....    ....... +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~  156 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----AVINTVS-V  156 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEE-C
T ss_pred             CCCCCCCCCCCCCEEEECCCCCCEEEEECC--CCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCC----CEEEECC-C
T ss_conf             111111111111001100124302432024--44442378760589715542011110011000146----3035315-6


Q ss_pred             CCCCEEEEEECCCCEEEEEECC
Q ss_conf             9999689993499899999489
Q 002564          314 SAPPLCIRFYANGRHILSAGQD  335 (907)
Q Consensus       314 ~~~v~~i~~~~~g~~l~s~~~d  335 (907)
                      ...+..+.+++++..++++..+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~  178 (301)
T d1l0qa2         157 GRSPKGIAVTPDGTKVYVANFD  178 (301)
T ss_dssp             CSSEEEEEECTTSSEEEEEETT
T ss_pred             CCCCEEEEEECCCCCEEEECCC
T ss_conf             7884288860465401310121

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=4.9e-24  Score=165.85  Aligned_cols=274  Identities=12%  Similarity=0.118  Sum_probs=161.5

Q ss_pred             EEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEE
Q ss_conf             99569949999910891489994069977899998019999799994998499998898602123412434683899995
Q 002564          198 VGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF  277 (907)
Q Consensus       198 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~  277 (907)
                      +++.++.|.+||+.+++.+.++..+  ..+..++|+|||+.+++++..++.|.+||+.+++.+..+. .+. .+..+.|+
T Consensus         7 ~~~~~~~v~v~D~~t~~~~~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~-~~~-~~~~~~~~   82 (301)
T d1l0qa2           7 ANSESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-AGS-SPQGVAVS   82 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-CSS-SEEEEEEC
T ss_pred             EECCCCEEEEEECCCCEEEEEEECC--CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEE-CCC-CCCCCCCC
T ss_conf             9789998999999999599999889--9836999928989999997899989999999894103200-024-64311000


Q ss_pred             CCCCEEE-EECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCEEECHHH
Q ss_conf             5999999-983999679999037999861247414889999689993499899999489977999802024321420245
Q 002564          278 ANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH  356 (907)
Q Consensus       278 ~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  356 (907)
                      +++..++ ++..++.+.+|+....    ....... +...+.++.++|++..++..+                       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~dg~~~~~~~-----------------------  134 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSN----TVAGTVK-TGKSPLGLALSPDGKKLYVTN-----------------------  134 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTT----EEEEEEE-CSSSEEEEEECTTSSEEEEEE-----------------------
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCC----EEEEECC-CCCCCEEEEEECCCCEEEEEE-----------------------
T ss_conf             111111111111100110012430----2432024-444423787605897155420-----------------------


Q ss_pred             HHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCC
Q ss_conf             66988510200221046833486402211345430289860996099999010110424320599999864999996799
Q 002564          357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG  436 (907)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  436 (907)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (301)
T d1l0qa2         135 --------------------------------------------------------------------------------  134 (301)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECC-CEEEEEECCCCCEEEEEECC
Q ss_conf             89999947991999968889510144066622356767757999995999989999567-70999987987612223318
Q 002564          437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-GDIKVWDFKGRDLKSRWEVG  515 (907)
Q Consensus       437 ~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~  515 (907)
                            ..++.+.+|+..+......+         .+...+..+++++++..+++++.+ +.+.+|+.............
T Consensus       135 ------~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (301)
T d1l0qa2         135 ------NGDKTVSVINTVTKAVINTV---------SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE  199 (301)
T ss_dssp             ------TTTTEEEEEETTTTEEEEEE---------ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             ------CCCCCEEEEECCCCCEEEEC---------CCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCC
T ss_conf             ------11110011000146303531---------567884288860465401310121111111111100011101335


Q ss_pred             CCEEEEEEEECCCEEEEEEC---CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEE-EEEECCCCEEEEECCCCCE
Q ss_conf             65269999207988999938---9839999923662689960599970038987899699-9991898199997697741
Q 002564          516 CSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL-LSSGMDGSLRIWDVILARQ  591 (907)
Q Consensus       516 ~~i~~i~~s~~~~~la~~~~---dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l-~s~s~Dg~I~iwd~~~~~~  591 (907)
                      ..+..+++++++..++++..   ++.|.+||..+++.+..+..+ ..+.+++|+|||++| ++++.|+.|++||+.++++
T Consensus       200 ~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCC-CCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEE
T ss_conf             77503110111101111002100002323656998199998489-98779999189899999989999699999999959


Q ss_pred             EEEEEECC
Q ss_conf             26764087
Q 002564          592 IDAIHVDV  599 (907)
Q Consensus       592 i~~~~~~~  599 (907)
                      +..+....
T Consensus       279 ~~~~~vg~  286 (301)
T d1l0qa2         279 TATMAVGK  286 (301)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
T ss_conf             99996899

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=5.8e-25  Score=171.77  Aligned_cols=143  Identities=11%  Similarity=0.078  Sum_probs=86.2

Q ss_pred             CEEEEEECCCCEEEEECCCCEEEEEECCC--CCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCEEEEEEECCC----
Q ss_conf             89999966880999966899199999289--99879999969998999-995699499999108914899940699----
Q 002564          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGW--GSSISSCVSSPALDVVA-VGCSDGKIHVHNVRYDEELVTFTHSMR----  224 (907)
Q Consensus       152 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~h--~~~I~~l~~sp~~~~la-~g~~dg~I~iwd~~~~~~~~~~~~~~~----  224 (907)
                      .++++++.+++|.+||+.+++++.++..+  ...+..++++|||++++ +++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf             69999767998999999999499999877889982379999998999999789994999999999298887247773125


Q ss_pred             CCEEEEEEECCCCCEEEEEE------------CCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCE
Q ss_conf             77899998019999799994------------998499998898602123412434683899995599999998399967
Q 002564          225 GAVTALAFSSDGQPLLASGA------------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI  292 (907)
Q Consensus       225 ~~v~~l~fs~dg~~~l~sg~------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i  292 (907)
                      ..+..++|+||++ .++++.            .++.+.+||..+++....+.  +...+..+.|+|++.++++++.  .+
T Consensus        82 ~~~~~v~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~--~~  156 (337)
T d1pbyb_          82 KSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGLGR--DL  156 (337)
T ss_dssp             ECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEESS--SE
T ss_pred             CCEEEEEECCCCC-EEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECC--CCCCCEEEEECCCCCEEEEECC--CC
T ss_conf             4025489868775-79995047762034203455521203566775988414--5687218998688888999717--75


Q ss_pred             EEEECCC
Q ss_conf             9999037
Q 002564          293 KMWIFDT  299 (907)
Q Consensus       293 ~iw~~~~  299 (907)
                      .+|+...
T Consensus       157 ~~~d~~~  163 (337)
T d1pbyb_         157 HVMDPEA  163 (337)
T ss_dssp             EEEETTT
T ss_pred             CEEEEEC
T ss_conf             0566303

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.95  E-value=9.2e-27  Score=183.30  Aligned_cols=110  Identities=9%  Similarity=0.011  Sum_probs=61.7

Q ss_pred             EEEEEECCCEEEEEECCCCCEEEEE--ECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf             8999956770999987987612223--31865269999207988999938983999992366268996059997003898
Q 002564          488 LMISAGYHGDIKVWDFKGRDLKSRW--EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF  565 (907)
Q Consensus       488 ~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~f  565 (907)
                      .+.++..++.+.+|+..++......  .+...+..+.+++++..++.... +.+.+||..+++.++.+. +...+.+++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~  299 (346)
T d1jmxb_         222 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAF  299 (346)
T ss_dssp             --CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEE
T ss_pred             EEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEEC-CCCCEEEEEE
T ss_conf             57540478349999777883687876315660688897179978999429-838999899993999974-9997789999


Q ss_pred             CCCCCEEEEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf             7899699999189819999769774126764087
Q 002564          566 SEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV  599 (907)
Q Consensus       566 spdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~  599 (907)
                      +|||++|++++.|+.|++||+.+++.+..+..+.
T Consensus       300 s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         300 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             CSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             CCCCCEEEEEECCCCEEEEECCCCCEEEEEECCC
T ss_conf             6899999999489929999996587979998899

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=1.2e-25  Score=176.05  Aligned_cols=298  Identities=9%  Similarity=0.022  Sum_probs=146.8

Q ss_pred             CEEEEEECCCEEEEEECCCCCEEEEEEECC-CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCC-----
Q ss_conf             899999569949999910891489994069-97789999801999979999499849999889860212341243-----
Q 002564          194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH-----  267 (907)
Q Consensus       194 ~~la~g~~dg~I~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h-----  267 (907)
                      +++++++.|++|.+||+.+++.+..+..+. ...+.+++|+|||+.++++++.++.|.+||+.+++.+..+. .+     
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID-LSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE-CCBTTEE
T ss_pred             EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEE-CCCCCCC
T ss_conf             699997679989999999994999998778899823799999989999997899949999999992988872-4777312


Q ss_pred             CCCEEEEEEECCCCEEEEECC------------CCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECC
Q ss_conf             468389999559999999839------------99679999037999861247414889999689993499899999489
Q 002564          268 DNAIISLHFFANEPVLMSASA------------DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD  335 (907)
Q Consensus       268 ~~~V~~l~~~~~~~~l~s~~~------------d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d  335 (907)
                      ...+..++|+|+++.++++..            ++.+.+|+....    ....... +...+..+.|+++|+++++++.+
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~  155 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL----SRRKAFE-APRQITMLAWARDGSKLYGLGRD  155 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----EEEEEEE-CCSSCCCEEECTTSSCEEEESSS
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCC----EEEEECC-CCCCCEEEEECCCCCEEEEECCC
T ss_conf             540254898687757999504776203420345552120356677----5988414-56872189986888889997177


Q ss_pred             CCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCE
Q ss_conf             97799980202432142024566988510200221046833486402211345430289860996099999010110424
Q 002564          336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH  415 (907)
Q Consensus       336 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~  415 (907)
                        ..+|+....+....+......                                                         
T Consensus       156 --~~~~d~~~~~~~~~~~~~~~~---------------------------------------------------------  176 (337)
T d1pbyb_         156 --LHVMDPEAGTLVEDKPIQSWE---------------------------------------------------------  176 (337)
T ss_dssp             --EEEEETTTTEEEEEECSTTTT---------------------------------------------------------
T ss_pred             --CCEEEEECCCEEEEEECCCCC---------------------------------------------------------
T ss_conf             --505663037278886147754---------------------------------------------------------


Q ss_pred             EEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf             32059999986499999679989999947991999968889510144066622356767757999995999989999567
Q 002564          416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH  495 (907)
Q Consensus       416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d  495 (907)
                                  ....+++++..+......                          .+...........+.........+
T Consensus       177 ------------~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~  218 (337)
T d1pbyb_         177 ------------AETYAQPDVLAVWNQHES--------------------------SGVMATPFYTARKDIDPADPTAYR  218 (337)
T ss_dssp             ------------TTTBCCCBCCCCCCCCTT--------------------------TTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred             ------------CCCEECCCCCEEECCCCC--------------------------CCEEEEEEEEEEECCCEEEECCCC
T ss_conf             ------------331135776314014665--------------------------312466324441036604540367


Q ss_pred             CEEEEEECCCCCEEEEE--ECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf             70999987987612223--3186526999920798899993898399999236626899605999700389878996999
Q 002564          496 GDIKVWDFKGRDLKSRW--EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL  573 (907)
Q Consensus       496 g~i~iwd~~~~~~~~~~--~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~  573 (907)
                      +.+.+|+...+......  ........+.+++++.+++.+  ++.+++||+.+++.+..+. +...+.+++|+|||++|+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~  295 (337)
T d1pbyb_         219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVW  295 (337)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEE
T ss_pred             CCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEE
T ss_conf             6179998688858889832887505888742661399973--5528999898896999974-899889999978999999


Q ss_pred             EEECCCCEEEEECCCCCEEEEEEE
Q ss_conf             991898199997697741267640
Q 002564          574 SSGMDGSLRIWDVILARQIDAIHV  597 (907)
Q Consensus       574 s~s~Dg~I~iwd~~~~~~i~~~~~  597 (907)
                      +++.|+.|++||..+++.+..+..
T Consensus       296 v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         296 LGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEECCCCEEEEECCCCCEEEEEEC
T ss_conf             994999299999998769899988

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.95  E-value=1e-24  Score=170.17  Aligned_cols=97  Identities=13%  Similarity=0.016  Sum_probs=48.3

Q ss_pred             EEEEECCCEEEEEECCCCEEEE-EEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCEEEEEECC
Q ss_conf             9999389839999923662689-960599970038987899699999189819999769774126764087257999778
Q 002564          530 LATVADDLVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSP  608 (907)
Q Consensus       530 la~~~~dg~i~i~d~~~~~~~~-~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~l~~sp  608 (907)
                      ++.+..+..+.+|+..++.... .+..|...+..+.+++++.+++.... +.|.+||..+++.+..+.....+.+++|||
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~  301 (346)
T d1jmxb_         223 PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDK  301 (346)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECS
T ss_pred             EEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEECCCCCEEEEEECC
T ss_conf             7540478349999777883687876315660688897179978999429-838999899993999974999778999968


Q ss_pred             CCCEEEEEEECCCEEEEEEC
Q ss_conf             97637998736974999644
Q 002564          609 NMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       609 dg~~lat~~~d~~~i~iW~~  628 (907)
                      ||++|++++.|+ .|++||.
T Consensus       302 DG~~l~v~~~d~-~v~v~D~  320 (346)
T d1jmxb_         302 KGDKLYLGGTFN-DLAVFNP  320 (346)
T ss_dssp             SSSCEEEESBSS-EEEEEET
T ss_pred             CCCEEEEEECCC-CEEEEEC
T ss_conf             999999994899-2999999

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.94  E-value=1.2e-21  Score=150.43  Aligned_cols=84  Identities=12%  Similarity=0.002  Sum_probs=59.1

Q ss_pred             ECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCE--EEEEECCCCEEEEECCCCCEEEEEEEC-CCE
Q ss_conf             07988999938983999992366268996059997003898789969--999918981999976977412676408-725
Q 002564          525 RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKW--LLSSGMDGSLRIWDVILARQIDAIHVD-VSI  601 (907)
Q Consensus       525 ~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~--l~s~s~Dg~I~iwd~~~~~~i~~~~~~-~~v  601 (907)
                      .++..++....++.+.+||..+++.+..+. +...+..++|+|||+.  +++++.|++|++||+.+++.+..+..+ ...
T Consensus       286 ~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P  364 (373)
T d2madh_         286 SEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGP  364 (373)
T ss_pred             CCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCC
T ss_conf             888247862589869999899996989866-8998258999989998999996799929999999998999988889898


Q ss_pred             EEEEECCC
Q ss_conf             79997789
Q 002564          602 TALSLSPN  609 (907)
Q Consensus       602 ~~l~~spd  609 (907)
                      +.+++.++
T Consensus       365 ~~l~~~~~  372 (373)
T d2madh_         365 QVLSVMNE  372 (373)
T ss_pred             CEEEEECC
T ss_conf             18998468

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.94  E-value=5.8e-21  Score=146.18  Aligned_cols=327  Identities=11%  Similarity=-0.045  Sum_probs=204.9

Q ss_pred             CCCCCCEEEECCCCCCCEEEEE-----ECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE----------
Q ss_conf             8975528998289997899999-----6688099996689919999928999879999969998999995----------
Q 002564          136 DDKFTPTCIMHPDTYLNKVIVG-----SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------  200 (907)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~l~~g-----s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~----------  200 (907)
                      +.......+++|++  +++++.     +..+.+.+||..+++.+.++..+..+  .++|+|||++++++.          
T Consensus        19 ~~~p~~~~a~spdg--~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          19 ADGPTNDEAPGADG--RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             CCCCCCCCCCCCCC--CEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCC
T ss_conf             78986563018999--7899973422578765999989999799999579886--0798689998999960577532124


Q ss_pred             CCCEEEEEECCCCCEEEEEEECCCC------CEEEEEEECCCCCEEEEE-ECCCCEEEEECCCCEEEEEEECCCCCCEEE
Q ss_conf             6994999991089148999406997------789999801999979999-499849999889860212341243468389
Q 002564          201 SDGKIHVHNVRYDEELVTFTHSMRG------AVTALAFSSDGQPLLASG-ASSGVISIWNLEKRRLQSVIREAHDNAIIS  273 (907)
Q Consensus       201 ~dg~I~iwd~~~~~~~~~~~~~~~~------~v~~l~fs~dg~~~l~sg-~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~  273 (907)
                      .++.|.+||..+++.+..+..+...      ....+.|+++++.+++.. ..++.+.+|+....+.....     ....+
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  169 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL-----SSPTC  169 (373)
T ss_pred             CCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEE-----CCCEE
T ss_conf             5318999977789388897268851368516897089985899379999869874677623687289982-----45206


Q ss_pred             EEEECCCCE-EEEECCCCCEEEEECCCCCCCCCEEEECC--CCCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCE
Q ss_conf             999559999-99983999679999037999861247414--889999689993499899999489977999802024321
Q 002564          274 LHFFANEPV-LMSASADNSIKMWIFDTTDGDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR  350 (907)
Q Consensus       274 l~~~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~  350 (907)
                      +.++|++.. +++.+.|+.+.+|+...............  +.........+.+++ .++..+.++.+.+|+........
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~  248 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATN  248 (373)
T ss_pred             EEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCC-EEEEECCCCEEEEEECCCCEEEE
T ss_conf             99962899199999479939999747742667886300366753043458878994-29992589659999768990789


Q ss_pred             EECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEE
Q ss_conf             42024566988510200221046833486402211345430289860996099999010110424320599999864999
Q 002564          351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC  430 (907)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~  430 (907)
                      ..                                                   .|+.               ........
T Consensus       249 ~~---------------------------------------------------~~~~---------------~~~~~~~~  262 (373)
T d2madh_         249 KA---------------------------------------------------PIDA---------------LSGGRKAD  262 (373)
T ss_pred             EE---------------------------------------------------EECC---------------CCCCEEEE
T ss_conf             77---------------------------------------------------6305---------------64757866


Q ss_pred             EECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf             99679989999947991999968889510144066622356767757999995999989999567709999879876122
Q 002564          431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS  510 (907)
Q Consensus       431 ~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  510 (907)
                      .+.+.+...+..+.++..                              ...+...+..+++...++.+.+||..+++.+.
T Consensus       263 ~~~~~~~~~~~~~~d~~~------------------------------~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~  312 (373)
T d2madh_         263 TWRPGGWQQVAYLKSSDG------------------------------IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             EECCCCCEEEEEECCCCE------------------------------EEEECCCCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf             413674133577149975------------------------------99954888247862589869999899996989


Q ss_pred             EEECCCCEEEEEEEECCC--EEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf             233186526999920798--8999938983999992366268996059997003898789
Q 002564          511 RWEVGCSLVKIVYHRVNG--LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED  568 (907)
Q Consensus       511 ~~~~~~~i~~i~~s~~~~--~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspd  568 (907)
                      .+.....+..++|+|||+  ++++++.|+.|++||+.+++.++++.++....+.+++.++
T Consensus       313 ~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         313 QISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECC
T ss_conf             866899825899998999899999679992999999999899998888989818998468

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=1.4e-20  Score=143.77  Aligned_cols=187  Identities=8%  Similarity=0.003  Sum_probs=101.8

Q ss_pred             EECCCCCCCEEEEEE-----CCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEEEE
Q ss_conf             982899978999996-----688099996689919999928999879999969998999995----------69949999
Q 002564          144 IMHPDTYLNKVIVGS-----QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVH  208 (907)
Q Consensus       144 ~~~p~~~~~~l~~gs-----~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~----------~dg~I~iw  208 (907)
                      +.+|++  .++++..     ..+.+.+||..+++.+.++..+..+  .++||||+++|++.+          .++.|.+|
T Consensus         8 a~spdg--~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~   83 (355)
T d2bbkh_           8 APAPDA--RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVF   83 (355)
T ss_dssp             CCCCCT--TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EECCCC--CEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf             658999--9999982664777671999999999499999899998--569948999999996777642015899989999


Q ss_pred             ECCCCCEEEEEEECCC------CCEEEEEEECCCCCEEEEEE--CCCCEEEEECCCCEEEEEEECCCC-------CCEEE
Q ss_conf             9108914899940699------77899998019999799994--998499998898602123412434-------68389
Q 002564          209 NVRYDEELVTFTHSMR------GAVTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHD-------NAIIS  273 (907)
Q Consensus       209 d~~~~~~~~~~~~~~~------~~v~~l~fs~dg~~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~h~-------~~V~~  273 (907)
                      |..+++.+..+..+..      .....++|+++++ .++++.  .+..+.+|+..+++....+. .+.       .....
T Consensus        84 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  161 (355)
T d2bbkh_          84 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDCYHIFPTAPDTF  161 (355)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETTEE
T ss_pred             ECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCC-EEEEECCCCCCEEEEEECCCCCEEEEEE-CCCCCEEEECCCCCE
T ss_conf             99999798898058864031179873499933887-1577327988204543057883766770-587404730699636


Q ss_pred             EEEECCCCEEEEECC-CCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEE
Q ss_conf             999559999999839-996799990379998612474148899996899934998999994899779998020
Q 002564          274 LHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (907)
Q Consensus       274 l~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~  345 (907)
                      +.+++++..++.... ++.+.+++....         ...+...+....+.+++..++.++.++.+.+|+...
T Consensus       162 ~~~~~dg~~~~v~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  225 (355)
T d2bbkh_         162 FMHCRDGSLAKVAFGTEGTPEITHTEVF---------HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS  225 (355)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCC---------SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT
T ss_pred             EEECCCCCEEEEEECCCCEEEEEECCCC---------CCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCC
T ss_conf             9993899989998347873799962433---------300011061021538997388746998299996589

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=7.1e-20  Score=139.21  Aligned_cols=74  Identities=16%  Similarity=0.240  Sum_probs=37.7

Q ss_pred             EEEEEEEECCCEEEEE-ECCCEEEEEECCCCEEEEE---EECCCCCEEEEEECCCCCEEEEEE-CCCCEEEEEC--CCCC
Q ss_conf             2699992079889999-3898399999236626899---605999700389878996999991-8981999976--9774
Q 002564          518 LVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRK---FEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILAR  590 (907)
Q Consensus       518 i~~i~~s~~~~~la~~-~~dg~i~i~d~~~~~~~~~---~~~h~~~I~~i~fspdg~~l~s~s-~Dg~I~iwd~--~~~~  590 (907)
                      ...+.++++++++++. ..++.+.+|++........   .......+.+++|+|||++|++++ .++.|++|++  .+|+
T Consensus       232 ~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         232 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             CEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCC
T ss_conf             12689951567205504568827878873999789999996789976289990798999999889993999999799996


Q ss_pred             E
Q ss_conf             1
Q 002564          591 Q  591 (907)
Q Consensus       591 ~  591 (907)
                      +
T Consensus       312 l  312 (333)
T d1ri6a_         312 L  312 (333)
T ss_dssp             E
T ss_pred             E
T ss_conf             8

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=6.7e-20  Score=139.36  Aligned_cols=303  Identities=13%  Similarity=0.064  Sum_probs=154.4

Q ss_pred             CEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEE---------ECCCC
Q ss_conf             879999969998999995-----6994999991089148999406997789999801999979999---------49984
Q 002564          183 SISSCVSSPALDVVAVGC-----SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG---------ASSGV  248 (907)
Q Consensus       183 ~I~~l~~sp~~~~la~g~-----~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg---------~~dg~  248 (907)
                      ++...+.+|+++.+++..     .++.+.+||..+++.+.++..+   ....++|+|||+.+.++.         ..++.
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g---~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG---FLPNPVVADDGSFIAHASTVFSRIARGERTDY   79 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC---SSCEEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECC---CCCCEEECCCCCEEEEEECCCCCCCCCCCCCE
T ss_conf             717476589999999982664777671999999999499999899---99856994899999999677764201589998


Q ss_pred             EEEEECCCCEEEEEEECCCC-------CCEEEEEEECCCCEEEEEC--CCCCEEEEECCCCCCCCCEEEECCCCCCCCEE
Q ss_conf             99998898602123412434-------6838999955999999983--99967999903799986124741488999968
Q 002564          249 ISIWNLEKRRLQSVIREAHD-------NAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC  319 (907)
Q Consensus       249 I~iwd~~~~~~~~~~~~~h~-------~~V~~l~~~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~  319 (907)
                      |.+||..+++....+. .+.       .....+.|++++..++.+.  .+..+.+|+....    ........+.   ..
T Consensus        80 v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~  151 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK----AFKRMLDVPD---CY  151 (355)
T ss_dssp             EEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT----EEEEEEECCS---EE
T ss_pred             EEEEECCCCCEEEEEE-CCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCC----CEEEEEECCC---CC
T ss_conf             9999999997988980-58864031179873499933887157732798820454305788----3766770587---40


Q ss_pred             EEEECCCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECC
Q ss_conf             99934998999994899779998020243214202456698851020022104683348640221134543028986099
Q 002564          320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT  399 (907)
Q Consensus       320 i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  399 (907)
                      ..+.......+..+.|+....+....                                                      
T Consensus       152 ~~~~~~~~~~~~~~~dg~~~~v~~~~------------------------------------------------------  177 (355)
T d2bbkh_         152 HIFPTAPDTFFMHCRDGSLAKVAFGT------------------------------------------------------  177 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECCS------------------------------------------------------
T ss_pred             EEEECCCCCEEEECCCCCEEEEEECC------------------------------------------------------
T ss_conf             47306996369993899989998347------------------------------------------------------


Q ss_pred             CEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEE
Q ss_conf             60999990101104243205999998649999967998999994799199996888951014406662235676775799
Q 002564          400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG  479 (907)
Q Consensus       400 ~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  479 (907)
                                                                   ++.+.+++......             .+...+..
T Consensus       178 ---------------------------------------------~~~~~~~~~~~~~~-------------~~~~~~~~  199 (355)
T d2bbkh_         178 ---------------------------------------------EGTPEITHTEVFHP-------------EDEFLINH  199 (355)
T ss_dssp             ---------------------------------------------SSCCEEEECCCCSC-------------TTSCBCSC
T ss_pred             ---------------------------------------------CCEEEEEECCCCCC-------------EECCEEEE
T ss_conf             ---------------------------------------------87379996243330-------------00110610


Q ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCCEEEEE--EC-----------CCCEEEEEEEECCCEEEEEECC----------
Q ss_conf             999599998999956770999987987612223--31-----------8652699992079889999389----------
Q 002564          480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW--EV-----------GCSLVKIVYHRVNGLLATVADD----------  536 (907)
Q Consensus       480 i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~-----------~~~i~~i~~s~~~~~la~~~~d----------  536 (907)
                      ..+.+++..++.++.++.+++|++..+......  ..           ......+.+++++..+++...+          
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  279 (355)
T d2bbkh_         200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  279 (355)
T ss_dssp             CEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCC
T ss_conf             21538997388746998299996589907998445784412685433035108999807997678874068712651799


Q ss_pred             CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCC--EEEEEECCCCEEEEECCCCCEEEEEEECC-CEEEEEECCC
Q ss_conf             8399999236626899605999700389878996--99999189819999769774126764087-2579997789
Q 002564          537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK--WLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPN  609 (907)
Q Consensus       537 g~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~--~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~l~~spd  609 (907)
                      ..|.+||..+++.+..+.. ...+.+++|+|||+  ++++++.|+.|++||+.+++.+..+.... ....+.+.++
T Consensus       280 ~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             CEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEEECCC
T ss_conf             7599986788849899668-99877999928999699999789998999999999899999286979658996999

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4.4e-19  Score=134.15  Aligned_cols=188  Identities=15%  Similarity=0.231  Sum_probs=85.4

Q ss_pred             EEEEECCCCEEEEECCCCEE---EEEECCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEEE--ECCCCCE
Q ss_conf             99996688099996689919---9999289998799999699989999956-9949999910891489994--0699778
Q 002564          154 VIVGSQEGSLQLWNISTKKK---LYEFKGWGSSISSCVSSPALDVVAVGCS-DGKIHVHNVRYDEELVTFT--HSMRGAV  227 (907)
Q Consensus       154 l~~gs~dg~i~iwd~~~~~~---~~~~~~h~~~I~~l~~sp~~~~la~g~~-dg~I~iwd~~~~~~~~~~~--~~~~~~v  227 (907)
                      +++++.+++|++|++.+...   ++.+ .|.+.+..++|+|||++|++++. |+.|.+|++........+.  ......+
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEEE-CCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf             998789993899998399976999997-5799886899958979999997789969999996898707985301369985


Q ss_pred             EEEEEECCCCCEEEEEE-CCCCEEEEECCCCEEEEEEE-CCCCCCEEEEEEECCCCEEEEECC-CCCEEEEECCCCCCCC
Q ss_conf             99998019999799994-99849999889860212341-243468389999559999999839-9967999903799986
Q 002564          228 TALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDP  304 (907)
Q Consensus       228 ~~l~fs~dg~~~l~sg~-~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~  304 (907)
                      ..++|+|||+ ++++++ .++.+.+|+........... ..+...+.++.++|+++.++.++. +..+.+|+........
T Consensus        86 ~~l~~spDg~-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~  164 (333)
T d1ri6a_          86 THISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  164 (333)
T ss_dssp             SEEEECTTSS-EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             EEEEECCCCC-EEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCE
T ss_conf             4999959998-874205688830220011100000010037785314988630101310256554205689732687410


Q ss_pred             CEE--EECCCCCCCCEEEEEECCCCEEEEEE-CCCCEEEEEC
Q ss_conf             124--74148899996899934998999994-8997799980
Q 002564          305 RLL--RFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSV  343 (907)
Q Consensus       305 ~~~--~~~~~h~~~v~~i~~~~~g~~l~s~~-~dg~i~iwd~  343 (907)
                      ...  .........+..+.|++++..++... ..+...++..
T Consensus       165 ~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         165 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             EEECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEE
T ss_conf             010001334038875279996020147862046672178851

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.86  E-value=2.8e-18  Score=128.93  Aligned_cols=380  Identities=10%  Similarity=0.028  Sum_probs=193.8

Q ss_pred             EEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECC-----CCCCEEEEEECCCCCEEEEEEC---------CCEEEE
Q ss_conf             89982899978999996688099996689919999928-----9998799999699989999956---------994999
Q 002564          142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-----WGSSISSCVSSPALDVVAVGCS---------DGKIHV  207 (907)
Q Consensus       142 ~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~-----h~~~I~~l~~sp~~~~la~g~~---------dg~I~i  207 (907)
                      ...|.+++  .+++  ..++.+.+||+.+++....+..     |...|.+..||||+++|+.++.         ++.+.+
T Consensus        21 ~~~W~~d~--~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDH--EYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSS--EEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEECCCC--EEEE--ECCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEE
T ss_conf             78968999--7999--7599499998899978999701564431676540599898897999977710001046734999


Q ss_pred             EECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCC-----------------CCC
Q ss_conf             991089148999406997789999801999979999499849999889860212341243-----------------468
Q 002564          208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH-----------------DNA  270 (907)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h-----------------~~~  270 (907)
                      ||+.+++. ..+..+ ...+....|+|||+ .+|... ++.+.+|+..+++.......+.                 .+.
T Consensus        97 ~d~~~~~~-~~l~~~-~~~~~~~~~SPDG~-~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          97 YDLNKRQL-ITEERI-PNNTQWVTWSPVGH-KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             EETTTTEE-CCSSCC-CTTEEEEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EECCCCCC-CCCCCC-CCCCCCCCCCCCCC-EEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCC
T ss_conf             98988851-312468-74231010146764-135751-464137988999465321014777405354320112100477


Q ss_pred             EEEEEEECCCCEEEEECCCCC-EEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCC
Q ss_conf             389999559999999839996-7999903799986124741488999968999349989999948997799980202432
Q 002564          271 IISLHFFANEPVLMSASADNS-IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS  349 (907)
Q Consensus       271 V~~l~~~~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~  349 (907)
                      ...+.|+|||+.++....|.+ +..|.+......       .........+.+...+.    ...+..+.+|++......
T Consensus       173 ~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~----~~~~~~~~v~~~~~~~~~  241 (470)
T d2bgra1         173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE-------SLQYPKTVRVPYPKAGA----VNPTVKFFVVNTDSLSSV  241 (470)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCST-------TCSSCEEEEEECCBTTS----CCCEEEEEEEEGGGCCSS
T ss_pred             CCCCEECCCCCCCCEEEECCCCCCEEEEEEECCC-------CCCCCEEEEECCCCCCC----CCCCCEEEEEECCCCCEE
T ss_conf             6530799998722026863776706998766047-------77887135403665454----688625799998886145


Q ss_pred             EEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEE
Q ss_conf             14202456698851020022104683348640221134543028986099609999901011042432059999986499
Q 002564          350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA  429 (907)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~  429 (907)
                      ......                      ......                                   ........+..
T Consensus       242 ~~~~~~----------------------~~~~~~-----------------------------------~~~~~~~~~~~  264 (470)
T d2bgra1         242 TNATSI----------------------QITAPA-----------------------------------SMLIGDHYLCD  264 (470)
T ss_dssp             SCCCEE----------------------EECCCH-----------------------------------HHHTSCEEEEE
T ss_pred             EECCCC----------------------CCCCCC-----------------------------------CCCCCCCEEEE
T ss_conf             520332----------------------247863-----------------------------------34789866778


Q ss_pred             EEECCCCCEEEEEEC-CC-----CEEEEECCCCCCCEEEECC-----CCCCCCCCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf             999679989999947-99-----1999968889510144066-----622356767757999995999989999567709
Q 002564          430 CTISACGNFAVLGTA-GG-----WIERFNLQSGISRGSYLDM-----SERSNYAHNGEVVGVACDSTNTLMISAGYHGDI  498 (907)
Q Consensus       430 ~~~s~~g~~l~~g~~-dg-----~i~i~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i  498 (907)
                      +.|.+++..++.... .+     .+..++..++.........     .......+........++.++.+++.+..||..
T Consensus       265 ~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~  344 (470)
T d2bgra1         265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYR  344 (470)
T ss_dssp             EEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCE
T ss_pred             EEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEECCCCCC
T ss_conf             88768783347873046881599999961888947899987514662143353135777245423788479874367576


Q ss_pred             EE--EECCCCCEEEEEECCCCEEEEEEEECCCEE-EEEECCC------EEEEEECCCCEEEEEE----ECCCCCEEEEEE
Q ss_conf             99--987987612223318652699992079889-9993898------3999992366268996----059997003898
Q 002564          499 KV--WDFKGRDLKSRWEVGCSLVKIVYHRVNGLL-ATVADDL------VIRLFDVVALRMVRKF----EGHTDRITDFCF  565 (907)
Q Consensus       499 ~i--wd~~~~~~~~~~~~~~~i~~i~~s~~~~~l-a~~~~dg------~i~i~d~~~~~~~~~~----~~h~~~I~~i~f  565 (907)
                      ++  |+...+...........+..+ ++++++.+ +++..++      .+.-.++..+.....+    .+|...+.+++|
T Consensus       345 ~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~f  423 (470)
T d2bgra1         345 HICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSF  423 (470)
T ss_dssp             EEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEE
T ss_pred             EEEEEECCCCCEEEECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEEEEEE
T ss_conf             4599952687304511698048787-897799999999568998351799999888998605703543588898799999


Q ss_pred             CCCCCEEEE---EECCCCEEEEECCCCCEEEEEEEC
Q ss_conf             789969999---918981999976977412676408
Q 002564          566 SEDGKWLLS---SGMDGSLRIWDVILARQIDAIHVD  598 (907)
Q Consensus       566 spdg~~l~s---~s~Dg~I~iwd~~~~~~i~~~~~~  598 (907)
                      ||||+|++.   +...-.+.+|+..+++.+..+...
T Consensus       424 Spdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n  459 (470)
T d2bgra1         424 SKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN  459 (470)
T ss_dssp             CTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEECC
T ss_pred             CCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf             989999999832899981999998999899998063

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=1.2e-16  Score=118.64  Aligned_cols=194  Identities=7%  Similarity=-0.082  Sum_probs=116.6

Q ss_pred             EEEECCCCCCCEEEE-EECC--CCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEEEE
Q ss_conf             899828999789999-9668--8099996689919999928999879999969998999995----------69949999
Q 002564          142 TCIMHPDTYLNKVIV-GSQE--GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVH  208 (907)
Q Consensus       142 ~~~~~p~~~~~~l~~-gs~d--g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~----------~dg~I~iw  208 (907)
                      .....+++...+++. ...+  ..+.+||..+++.+.....+...  .++++|+++.+++.+          .++.|.+|
T Consensus        24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~  101 (368)
T d1mdah_          24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVF  101 (368)
T ss_dssp             CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred             CCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEE
T ss_conf             645589876126972045788621799708998377888578777--513989998899975567640103567869999


Q ss_pred             ECCCCCEEEEEEECCC------CCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCE
Q ss_conf             9108914899940699------7789999801999979999499849999889860212341243468389999559999
Q 002564          209 NVRYDEELVTFTHSMR------GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV  282 (907)
Q Consensus       209 d~~~~~~~~~~~~~~~------~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  282 (907)
                      |..+++.+..+..+..      .....++|+|||+.++++...++.+.+||+.+++....+. .+.....   +......
T Consensus       102 D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~---~~~~~~~  177 (368)
T d1mdah_         102 DPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK-SASCFHI---HPGAAAT  177 (368)
T ss_dssp             CTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE-CSSCCCC---EEEETTE
T ss_pred             ECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEE-CCCCCEE---CCCCCCE
T ss_conf             89999383064378542102468864058878998999996899859999899893867860-4675237---4699823


Q ss_pred             EEEECCCCCEEEEECCCCCCCCCEE--EECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEC
Q ss_conf             9998399967999903799986124--741488999968999349989999948997799980
Q 002564          283 LMSASADNSIKMWIFDTTDGDPRLL--RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV  343 (907)
Q Consensus       283 l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~  343 (907)
                      ++..+.|+.+..|+...........  .....+...+....+.+++..+.+.  .+.+.+++.
T Consensus       178 ~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~  238 (368)
T d1mdah_         178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDI  238 (368)
T ss_dssp             EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEEC
T ss_pred             EEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEC--CCCEEEEEE
T ss_conf             9999489988999826896266653031113566646601015586899934--897799960

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=2.5e-16  Score=116.48  Aligned_cols=310  Identities=7%  Similarity=-0.039  Sum_probs=152.0

Q ss_pred             CCCEEEEEECCCCCEEEEE---ECC--CEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEE----------C
Q ss_conf             9987999996999899999---569--949999910891489994069977899998019999799994----------9
Q 002564          181 GSSISSCVSSPALDVVAVG---CSD--GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA----------S  245 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g---~~d--g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~----------~  245 (907)
                      .++...++..++++...+.   ..+  ..+.+||..+++.+.....+. .+  .++|+|||+ .+++.+          .
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~--~~a~spDg~-~i~~~~~~~~~~~~g~~   94 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGS-DFALASTSFARSAKGKR   94 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC--EEEECTTSS-CEEEEEEEETTTTSSSE
T ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCC-CC--CCEECCCCC-EEEEECCCCCCCCCCCC
T ss_conf             798666455898761269720457886217997089983778885787-77--513989998-89997556764010356


Q ss_pred             CCCEEEEECCCCEEEEEEECCCC-------CCEEEEEEECCCCEEEEEC-CCCCEEEEECCCCCCCCCEEEECCCCCCCC
Q ss_conf             98499998898602123412434-------6838999955999999983-999679999037999861247414889999
Q 002564          246 SGVISIWNLEKRRLQSVIREAHD-------NAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPP  317 (907)
Q Consensus       246 dg~I~iwd~~~~~~~~~~~~~h~-------~~V~~l~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v  317 (907)
                      ++.|.+||..+++....+. .+.       .....++|+||+++++++. .++.+.+|+....    +.......+....
T Consensus        95 d~~v~v~D~~t~~~~~~i~-~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~----~~~~~~~~~~~~~  169 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA----SDDQLTKSASCFH  169 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT----EEEEEEECSSCCC
T ss_pred             CCEEEEEECCCCCEEEEEC-CCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCC----CEEEEEECCCCCE
T ss_conf             7869999899993830643-7854210246886405887899899999689985999989989----3867860467523


Q ss_pred             EEEEEECCCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEE
Q ss_conf             68999349989999948997799980202432142024566988510200221046833486402211345430289860
Q 002564          318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM  397 (907)
Q Consensus       318 ~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  397 (907)
                      .   +......++..+.||.+..++.............                                          
T Consensus       170 ~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~------------------------------------------  204 (368)
T d1mdah_         170 I---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA------------------------------------------  204 (368)
T ss_dssp             C---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCC------------------------------------------
T ss_pred             E---CCCCCCEEEEECCCCCEEEEEECCCCEEEEEEEC------------------------------------------
T ss_conf             7---4699823999948998899982689626665303------------------------------------------


Q ss_pred             CCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             99609999901011042432059999986499999679989999947991999968889510144066622356767757
Q 002564          398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV  477 (907)
Q Consensus       398 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v  477 (907)
                                          .....+........+.+++..+..  ..+.+++++...+....                 
T Consensus       205 --------------------~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~-----------------  245 (368)
T d1mdah_         205 --------------------QCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATM-----------------  245 (368)
T ss_dssp             --------------------CSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEE-----------------
T ss_pred             --------------------CCCCCCCCCEEECCCCCCCEEEEE--CCCCEEEEEECCCCEEE-----------------
T ss_conf             --------------------111356664660101558689993--48977999606993699-----------------


Q ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE---CCCCEEEEEEEECCCEEEEEEC---------CCEEEEEECC
Q ss_conf             999995999989999567709999879876122233---1865269999207988999938---------9839999923
Q 002564          478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE---VGCSLVKIVYHRVNGLLATVAD---------DLVIRLFDVV  545 (907)
Q Consensus       478 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~i~~i~~s~~~~~la~~~~---------dg~i~i~d~~  545 (907)
                                             ++...........   .......+++++++..+++...         ...|.+||..
T Consensus       246 -----------------------~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~  302 (368)
T d1mdah_         246 -----------------------KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS  302 (368)
T ss_dssp             -----------------------ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred             -----------------------EEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECC
T ss_conf             -----------------------760246543045540127883568871799879998358973340588649999899


Q ss_pred             CCEEEEEEECCCCCEEEEEECCCCCE--EEEEECCCCEEEEECCCCCEEEEEEECCCEEEEEEC
Q ss_conf             66268996059997003898789969--999918981999976977412676408725799977
Q 002564          546 ALRMVRKFEGHTDRITDFCFSEDGKW--LLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLS  607 (907)
Q Consensus       546 ~~~~~~~~~~h~~~I~~i~fspdg~~--l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~l~~s  607 (907)
                      +++.+..+. +...+.+++|+|||+.  ++++..|+.|++||..+++.+..+........+++-
T Consensus       303 t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~  365 (368)
T d1mdah_         303 VGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             SCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred             CCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEE
T ss_conf             994868955-899651799998999899999489996999989999799998799998789973

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.76  E-value=1.5e-17  Score=124.39  Aligned_cols=55  Identities=13%  Similarity=0.121  Sum_probs=27.7

Q ss_pred             EEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCC
Q ss_conf             8999980199997999949984999988986021234124346838999955999
Q 002564          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP  281 (907)
Q Consensus       227 v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~  281 (907)
                      .....++|||+++++....++.|.++|+.+.+....+...+...+..++|+|+++
T Consensus        74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~  128 (441)
T d1qnia2          74 ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPK  128 (441)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSB
T ss_pred             CCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCC
T ss_conf             2210326888889997389997999988778475579567887864348705699

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.75  E-value=2.3e-14  Score=103.94  Aligned_cols=150  Identities=17%  Similarity=0.163  Sum_probs=87.5

Q ss_pred             EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEC----CCCCEEEEEEECCCCCEEEEEEC---------CCCEEEE
Q ss_conf             9999699989999956994999991089148999406----99778999980199997999949---------9849999
Q 002564          186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS----MRGAVTALAFSSDGQPLLASGAS---------SGVISIW  252 (907)
Q Consensus       186 ~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~----~~~~v~~l~fs~dg~~~l~sg~~---------dg~I~iw  252 (907)
                      .+.|.++++++..  .++.+.+||+.+++....+...    +...|.+..|+|||+ .|+.++.         ++.+.+|
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCC-EEEEEECCCCEEEECCCCEEEEE
T ss_conf             7896899979997--59949999889997899970156443167654059989889-79999777100010467349999


Q ss_pred             ECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEEC-------C---------CCCCC
Q ss_conf             8898602123412434683899995599999998399967999903799986124741-------4---------88999
Q 002564          253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR-------S---------GHSAP  316 (907)
Q Consensus       253 d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-------~---------~h~~~  316 (907)
                      |+.+++... +. .+...+....|+|||..++... ++.+.+|+......  ..+...       .         ...+.
T Consensus        98 d~~~~~~~~-l~-~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~--~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          98 DLNKRQLIT-EE-RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS--YRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             ETTTTEECC-SS-CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC--EECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             ECCCCCCCC-CC-CCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCCE--EEEEECCCCCCCCCCCCCEEEEEEECCC
T ss_conf             898885131-24-6874231010146764135751-46413798899946--5321014777405354320112100477


Q ss_pred             CEEEEEECCCCEEEEEECCCC-EEEEEC
Q ss_conf             968999349989999948997-799980
Q 002564          317 PLCIRFYANGRHILSAGQDRA-FRLFSV  343 (907)
Q Consensus       317 v~~i~~~~~g~~l~s~~~dg~-i~iwd~  343 (907)
                      ...+.|+|||++++....|.+ +..+.+
T Consensus       173 ~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         173 YSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             CCCCEECCCCCCCCEEEECCCCCCEEEE
T ss_conf             6530799998722026863776706998

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.69  E-value=3.6e-16  Score=115.47  Aligned_cols=127  Identities=9%  Similarity=-0.001  Sum_probs=71.6

Q ss_pred             EEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEE
Q ss_conf             99995588299995488876653212696289755289982899978999996688099996689919999928999879
Q 002564          106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSIS  185 (907)
Q Consensus       106 l~s~~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~I~  185 (907)
                      ++|++.+|.|.+|++.+++.    ++++.         +|+|++.  . ..|..+.+..++..  +........|.....
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~----l~~Ip---------Vfspd~~--~-g~g~~~es~~vl~~--~~~~~~gd~hhP~~s   75 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRE----LMRIP---------VFNVDSA--T-GWGITNESKEILGG--DQQYLNGDCHHPHIS   75 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEE----EEEEC---------SSSBCTT--T-CTTTSHHHHHHHCS--SSCCSCCCBCCCEEE
T ss_pred             EEECCCCCCEEEEECCCCCE----EEEEE---------EECCCCC--E-EEEECCCCCEEEEC--CCCCCCCCCCCCCCC
T ss_conf             99688777489996789807----99997---------6757898--7-99988865047831--332256755677722


Q ss_pred             EEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf             999969998999995-69949999910891489994069977899998019999799994998499
Q 002564          186 SCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS  250 (907)
Q Consensus       186 ~l~~sp~~~~la~g~-~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~  250 (907)
                      ....+|||++|++.. .++.|.++|+.+.+....+.......+..++|+|+++...+.+.....+.
T Consensus        76 ~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~  141 (441)
T d1qnia2          76 MTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIP  141 (441)
T ss_dssp             EETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEE
T ss_pred             EECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCC
T ss_conf             103268888899973899979999887784755795678878643487056998999956677544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.59  E-value=9.5e-11  Score=80.76  Aligned_cols=31  Identities=13%  Similarity=0.228  Sum_probs=16.6

Q ss_pred             CCEEEEEECC-CCCEEEEEE-CCCCEEEEECCC
Q ss_conf             9700389878-996999991-898199997697
Q 002564          558 DRITDFCFSE-DGKWLLSSG-MDGSLRIWDVIL  588 (907)
Q Consensus       558 ~~I~~i~fsp-dg~~l~s~s-~Dg~I~iwd~~~  588 (907)
                      .....++++| +|++|+++. .++.|.+|++..
T Consensus       309 ~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         309 GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCCEEEECCCCCCEEEEEECCCCEEEEEEEEC
T ss_conf             986478964899999999967999499999828

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.57  E-value=1.9e-10  Score=78.78  Aligned_cols=71  Identities=14%  Similarity=0.199  Sum_probs=40.0

Q ss_pred             CEEEEEECCCCCEEEEEEC------CCCEEEEECCCCCEEEE-EE------ECCCEEEEEECC-CCCEEEEEEECCCEEE
Q ss_conf             7003898789969999918------98199997697741267-64------087257999778-9763799873697499
Q 002564          559 RITDFCFSEDGKWLLSSGM------DGSLRIWDVILARQIDA-IH------VDVSITALSLSP-NMDVLATAHVDQNGVY  624 (907)
Q Consensus       559 ~I~~i~fspdg~~l~s~s~------Dg~I~iwd~~~~~~i~~-~~------~~~~v~~l~~sp-dg~~lat~~~d~~~i~  624 (907)
                      ....+.++|||++|+++..      ...|..|++.....+.. ..      .......++++| +|++|+++..++..|.
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~  335 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             CCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCEEE
T ss_conf             76316998999978997135787542279999856887144676766777679986478964899999999967999499


Q ss_pred             EEECC
Q ss_conf             96445
Q 002564          625 LWVNR  629 (907)
Q Consensus       625 iW~~~  629 (907)
                      +|+..
T Consensus       336 v~~~~  340 (365)
T d1jofa_         336 IYRWK  340 (365)
T ss_dssp             EEEEE
T ss_pred             EEEEE
T ss_conf             99982

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-09  Score=74.03  Aligned_cols=115  Identities=15%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             ECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCC---CCCEEEEEECCCCCEEEEEEC---------CCEEEEEECCC
Q ss_conf             828999789999966880999966899199999289---998799999699989999956---------99499999108
Q 002564          145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCVSSPALDVVAVGCS---------DGKIHVHNVRY  212 (907)
Q Consensus       145 ~~p~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h---~~~I~~l~~sp~~~~la~g~~---------dg~I~iwd~~~  212 (907)
                      |.+++  .++. -..+|.+.+||+.+++....+...   ...+....+|||+++++....         .+.+.++|+.+
T Consensus        24 W~~~~--~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          24 WISDT--EFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             BSSSS--CBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EECCC--CEEE-EECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCC
T ss_conf             91798--4899-92899699998789988998727644445532138989888699998451004760335289998568


Q ss_pred             CCEEEEEEE-CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE
Q ss_conf             914899940-6997789999801999979999499849999889860212341
Q 002564          213 DEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR  264 (907)
Q Consensus       213 ~~~~~~~~~-~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~  264 (907)
                      +........ .....+....|+|||+ .+|-.. ++.|.+.+..++.......
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~-~iafv~-~~nl~~~~~~~~~~~~lt~  151 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQ-QLIFIF-ENNIYYCAHVGKQAIRVVS  151 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTT-CEEEEE-TTEEEEESSSSSCCEEEEC
T ss_pred             CCEEECCCCCCCCCCCCEEEECCCCC-EEEEEE-CCEEEEEECCCCCEEEEEC
T ss_conf             84564157667764311002426785-699996-1329999548996589711

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.40  E-value=2.8e-09  Score=71.38  Aligned_cols=57  Identities=14%  Similarity=0.172  Sum_probs=25.0

Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEC---CCEEEEEE---CCCCCEEEEEE
Q ss_conf             003898789969999918981999976977412676408---72579997---78976379987
Q 002564          560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD---VSITALSL---SPNMDVLATAH  617 (907)
Q Consensus       560 I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~---~~v~~l~~---spdg~~lat~~  617 (907)
                      ...++|.++|++.++...++.|..++.. ++........   ...++++|   ++|++.|..++
T Consensus       210 pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         210 IDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             CSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             CCCEEECCCCCEEEEECCCCCEEEECCC-CCEEEEEECCCCCCCCEEEEECCCCCCCCEEEEEC
T ss_conf             7523787999999997489918998789-97899996378988824899708788789899998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.33  E-value=8.8e-09  Score=68.17  Aligned_cols=28  Identities=18%  Similarity=0.248  Sum_probs=10.1

Q ss_pred             CEEEEEEECCCCEEEEECCCCCEEEEEC
Q ss_conf             8389999559999999839996799990
Q 002564          270 AIISLHFFANEPVLMSASADNSIKMWIF  297 (907)
Q Consensus       270 ~V~~l~~~~~~~~l~s~~~d~~i~iw~~  297 (907)
                      .+.+++|.++++++++...++.+..|+.
T Consensus        69 ~~~gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          69 KVSGLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CCCEEEECCCCCEEEEECCCCEEEEEEE
T ss_conf             8536898677886998328953788871

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2.7e-08  Score=65.05  Aligned_cols=49  Identities=12%  Similarity=0.040  Sum_probs=17.4

Q ss_pred             EEEEEECCCCCEEEEEEC---CCCEEEEECCCCCEEEEEEECCCEEEEEECC
Q ss_conf             003898789969999918---9819999769774126764087257999778
Q 002564          560 ITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSP  608 (907)
Q Consensus       560 I~~i~fspdg~~l~s~s~---Dg~I~iwd~~~~~~i~~~~~~~~v~~l~~sp  608 (907)
                      .....|||||++|+..+.   ...|.++++..+...........+...+|||
T Consensus       216 ~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         216 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             CCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEECC
T ss_conf             4455898999999999817998479999999997799857998588378289

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=1.1e-08  Score=67.55  Aligned_cols=238  Identities=7%  Similarity=-0.032  Sum_probs=0.0

Q ss_pred             CCCCEEEEEEECCCCEEEEECCC-CCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEE
Q ss_conf             34683899995599999998399-96799990379998612474148899996899934998999994899779998020
Q 002564          267 HDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ  345 (907)
Q Consensus       267 h~~~V~~l~~~~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~  345 (907)
                      +.....++++.+++...++.... +.+..++....    ........-...+..+++.+++..+++....+.+++++...
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~   87 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGST----GTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN   87 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC--------CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCS
T ss_pred             CCCCCCEEEECCCCCEEEEECCCCCEEEEECCCCC----EEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEEEECC
T ss_conf             76987889996999999997189988999938996----68974369866840899938998898631000035542112


Q ss_pred             CCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCC
Q ss_conf             24321420245669885102002210468334864022113454302898609960999990101104243205999998
Q 002564          346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT  425 (907)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~  425 (907)
                      ..........                                                                     .
T Consensus        88 ~~~~~~~~~~---------------------------------------------------------------------~   98 (260)
T d1rwia_          88 NQTVLPFDGL---------------------------------------------------------------------N   98 (260)
T ss_dssp             CCEECCCCSC---------------------------------------------------------------------C
T ss_pred             CEEEEEEEEE---------------------------------------------------------------------E
T ss_conf             0000001000---------------------------------------------------------------------0


Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf             64999996799899999479919999688895101440666223567677579999959999899995677099998798
Q 002564          426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG  505 (907)
Q Consensus       426 ~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  505 (907)
                      ....+++.+++++.+....+..+..++...........        .......+++++++++++++...++.|..++...
T Consensus        99 ~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_          99 YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF--------TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             SEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC--------CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             ECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEE--------CCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCC
T ss_conf             00000245532057503355532112322220122320--------3667752054548998864102564332223431


Q ss_pred             CCEEEEEECC-CCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf             7612223318-652699992079889999389839999923662689960599970038987899699999189819999
Q 002564          506 RDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW  584 (907)
Q Consensus       506 ~~~~~~~~~~-~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iw  584 (907)
                      .......... .....+++.++++++++....+.|..++.............-.....|+++++|.++++-..++.|+..
T Consensus       171 ~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         171 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             CEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEE
T ss_conf             00122210114787631231000134321489989999699976999706998981799990899999997999989999


Q ss_pred             E
Q ss_conf             7
Q 002564          585 D  585 (907)
Q Consensus       585 d  585 (907)
                      +
T Consensus       251 ~  251 (260)
T d1rwia_         251 T  251 (260)
T ss_dssp             C
T ss_pred             E
T ss_conf             5

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.27  E-value=3.7e-08  Score=64.20  Aligned_cols=57  Identities=12%  Similarity=0.172  Sum_probs=27.5

Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECC-CEEEEEECCCCCEEEEE
Q ss_conf             0038987899699999189819999769774126764087-25799977897637998
Q 002564          560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATA  616 (907)
Q Consensus       560 I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~l~~spdg~~lat~  616 (907)
                      ...+++..+|+..++....+.|.+||...++.+..+..+. .+++++|.|+++.|..+
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             CEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEE
T ss_conf             1025783478579998279999999699997999997999987899992898999999

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.20  E-value=7.9e-08  Score=62.05  Aligned_cols=57  Identities=18%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             EEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf             89999801999979999499849999889860212341243468389999559999999
Q 002564          227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS  285 (907)
Q Consensus       227 v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s  285 (907)
                      +..++|.++|+ +.++-...+.|..|+..++....... ........+++.+++.++++
T Consensus        42 lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va   98 (319)
T d2dg1a1          42 LEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVC   98 (319)
T ss_dssp             EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEE
T ss_pred             CEECEECCCCC-EEEEECCCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCCEEEE
T ss_conf             47078999999-99997799999999899995999994-89987038999999999999

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=8.5e-08  Score=61.85  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=27.0

Q ss_pred             CEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCEEEEEEECC---CEEEEEECCCCCEEEEEEECCCEEEEEEC
Q ss_conf             7003898789969999918-9819999769774126764087---25799977897637998736974999644
Q 002564          559 RITDFCFSEDGKWLLSSGM-DGSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWVN  628 (907)
Q Consensus       559 ~I~~i~fspdg~~l~s~s~-Dg~I~iwd~~~~~~i~~~~~~~---~v~~l~~spdg~~lat~~~d~~~i~iW~~  628 (907)
                      ....+++.++|+.+++-.. ++.|.+|+ ++|+.+..+....   ....+++.|+|.+++ +..+. .|++|..
T Consensus       201 ~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~-~v~~fr~  271 (279)
T d1q7fa_         201 YPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDY-RLYIYRY  271 (279)
T ss_dssp             SEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTT-EEEEEEC
T ss_pred             CCCCCCCCCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCCCEEEEEEECCCCEEE-EECCC-EEEEEEE
T ss_conf             8762323147869999789980899999-9999999996888889883799908991999-91899-6999872

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=1e-07  Score=61.32  Aligned_cols=55  Identities=18%  Similarity=0.091  Sum_probs=20.5

Q ss_pred             CCCEEEEEECCCCCEEEEEECC---CEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC
Q ss_conf             9987999996999899999569---94999991089148999406997789999801999
Q 002564          181 GSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (907)
Q Consensus       181 ~~~I~~l~~sp~~~~la~g~~d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~  237 (907)
                      ...+...+|||||+.||.....   ..+.+.+...+.... +... .+......|+|+|.
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~spdg~   95 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASF-PRHNGAPAFSPDGS   95 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECC-SSCEEEEEECTTSS
T ss_pred             CCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEE-EEEE-ECCCCCCEECCCCC
T ss_conf             9842603887899989999815267513443113675067-7642-02454302448898

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=1.2e-07  Score=60.99  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=14.0

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             7003898789969999918981999976977
Q 002564          559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILA  589 (907)
Q Consensus       559 ~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~  589 (907)
                      ....+++.|||.+++ ++.+..|++|...+.
T Consensus       245 ~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         245 QCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             CEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             CEEEEEEECCCCEEE-EECCCEEEEEEEEEE
T ss_conf             883799908991999-918996999872203

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.17  E-value=1.2e-07  Score=60.91  Aligned_cols=51  Identities=18%  Similarity=0.208  Sum_probs=18.4

Q ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCEEEEEEEECCC
Q ss_conf             99999599998999956770999987987612223318-6526999920798
Q 002564          478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNG  528 (907)
Q Consensus       478 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~s~~~~  528 (907)
                      .+++++.+|++.++....+.|.+|+...+.....+..+ ...++++|.++++
T Consensus       229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~  280 (314)
T d1pjxa_         229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred             EEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCC
T ss_conf             0257834785799982799999996999979999979999878999928989

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.16  E-value=1.3e-07  Score=60.71  Aligned_cols=59  Identities=15%  Similarity=0.181  Sum_probs=27.8

Q ss_pred             CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEE
Q ss_conf             9879999969998999995699499999108914899940699778999980199997999
Q 002564          182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS  242 (907)
Q Consensus       182 ~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~s  242 (907)
                      ..+..++|.+++++.++-...+.|..|+..+++....+... ......+++.+||+ ++++
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~-~~~p~gla~~~dG~-l~va   98 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGR-LFVC   98 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSC-EEEE
T ss_pred             CCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCCC-EEEE
T ss_conf             67470789999999999779999999989999599999489-98703899999999-9999

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.4e-07  Score=60.53  Aligned_cols=104  Identities=13%  Similarity=0.066  Sum_probs=38.8

Q ss_pred             ECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECC--CCCEEEEEEECCCCCEEEEEE---------CCCCEEEEECCCC
Q ss_conf             96999899999569949999910891489994069--977899998019999799994---------9984999988986
Q 002564          189 SSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM--RGAVTALAFSSDGQPLLASGA---------SSGVISIWNLEKR  257 (907)
Q Consensus       189 ~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~--~~~v~~l~fs~dg~~~l~sg~---------~dg~I~iwd~~~~  257 (907)
                      |.+++.++. -..+|.|.+||+.+++....+....  ...+....|+||++ .++...         ..+.+.++|+.++
T Consensus        24 W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~-~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          24 WISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             BSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EECCCCEEE-EECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCC-EEEEEECCCCEEEEECCCCEEEEECCCC
T ss_conf             917984899-92899699998789988998727644445532138989888-6999984510047603352899985688


Q ss_pred             EEEEEEE-CCCCCCEEEEEEECCCCEEEEECCCCCEEEE
Q ss_conf             0212341-2434683899995599999998399967999
Q 002564          258 RLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMW  295 (907)
Q Consensus       258 ~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw  295 (907)
                      ....... ......+....|+|||+.++... ++.+.+.
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             CEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEE
T ss_conf             4564157667764311002426785699996-1329999

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.86  E-value=2e-06  Score=53.13  Aligned_cols=56  Identities=14%  Similarity=0.158  Sum_probs=26.1

Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCC-EEEEEEC-CCCCEEE
Q ss_conf             9700389878996999991898199997697741267640872-5799977-8976379
Q 002564          558 DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLS-PNMDVLA  614 (907)
Q Consensus       558 ~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~-v~~l~~s-pdg~~la  614 (907)
                      +....+++..+|.+.++.-..+.|..|| ++|+.+..+..+.+ +++++|- +|.+.|.
T Consensus       199 g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         199 GGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             SEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             CCCCCEEECCCCCEEEEEECCCCEEEEC-CCCCEEEEECCCCCCEEEEEEECCCCCEEE
T ss_conf             6663267869999895320788468856-999286686389985279898289999999

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.56  E-value=1.6e-05  Score=47.26  Aligned_cols=45  Identities=18%  Similarity=0.361  Sum_probs=18.9

Q ss_pred             CCC--CCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC
Q ss_conf             699--989999956994999991089148999406997789999801999
Q 002564          190 SPA--LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ  237 (907)
Q Consensus       190 sp~--~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~  237 (907)
                      +|+  |+.++... +|.|.+.|+..++.. .+..+ .+.+...+|+|||+
T Consensus         7 sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~-~~~~~~p~~SPDG~   53 (281)
T d1k32a2           7 NPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSN-LGVINNARFFPDGR   53 (281)
T ss_dssp             EEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECS-SSEEEEEEECTTSS
T ss_pred             CCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECC-CCCCCCEEECCCCC
T ss_conf             8887999999990-996899989999879-97669-98526779878999

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.53  E-value=1.9e-05  Score=46.82  Aligned_cols=53  Identities=15%  Similarity=0.094  Sum_probs=21.5

Q ss_pred             CCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEE
Q ss_conf             69949999910891489994069977899998019999799994998499998898602
Q 002564          201 SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL  259 (907)
Q Consensus       201 ~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~  259 (907)
                      ..+.|..||..+++. ..+..  ...+.++++.++|. +++ ++.+ .+..+|..+++.
T Consensus        38 ~~~~I~r~d~~~g~~-~~~~~--~~~~~~i~~~~dg~-l~v-a~~~-gl~~~d~~tg~~   90 (295)
T d2ghsa1          38 LERELHELHLASGRK-TVHAL--PFMGSALAKISDSK-QLI-ASDD-GLFLRDTATGVL   90 (295)
T ss_dssp             GGTEEEEEETTTTEE-EEEEC--SSCEEEEEEEETTE-EEE-EETT-EEEEEETTTCCE
T ss_pred             CCCEEEEEECCCCEE-EEEEC--CCCCEEEEEECCCC-EEE-EEEC-CCEEEECCCCEE
T ss_conf             899999998998959-99989--99817989965998-899-9737-638950464513

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.47  E-value=2.7e-05  Score=45.88  Aligned_cols=81  Identities=12%  Similarity=0.090  Sum_probs=49.5

Q ss_pred             CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCEEE--EEECCCCC-EE
Q ss_conf             8399999236626899605999700389878996999991898199997697741267640872579--99778976-37
Q 002564          537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD-VL  613 (907)
Q Consensus       537 g~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~--l~~spdg~-~l  613 (907)
                      |.+.-||..+++.+.+..... +...=..+-.+..++.++.|+.++.+|..+|+.+-.++....+.+  +.|..+|+ |+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEECCCCCCEEEEECCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEE
T ss_conf             617875787786670516889-8877607986998999779991999999988685799898994516779998999999


Q ss_pred             EEEEE
Q ss_conf             99873
Q 002564          614 ATAHV  618 (907)
Q Consensus       614 at~~~  618 (907)
                      +....
T Consensus       536 ~v~~G  540 (573)
T d1kb0a2         536 SVAVG  540 (573)
T ss_dssp             EEEEC
T ss_pred             EEEEC
T ss_conf             99937

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.35  E-value=5.1e-05  Score=44.06  Aligned_cols=83  Identities=10%  Similarity=0.049  Sum_probs=55.4

Q ss_pred             CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCEE--EEEECCCCC-EE
Q ss_conf             839999923662689960599970038987899699999189819999769774126764087257--999778976-37
Q 002564          537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSIT--ALSLSPNMD-VL  613 (907)
Q Consensus       537 g~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~--~l~~spdg~-~l  613 (907)
                      |.+.-+|+.+++.+.+.... .+...-..+-.+.+++.++.||.++.+|..+|+.+-.++....+.  -+.+..+|+ |+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEEECCCCEEEEECCCC-CCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEE
T ss_conf             64688707788373102578-88877405987998999778981999999998582799899995516779998999999


Q ss_pred             EEEEECC
Q ss_conf             9987369
Q 002564          614 ATAHVDQ  620 (907)
Q Consensus       614 at~~~d~  620 (907)
                      +.....+
T Consensus       517 ~v~aG~g  523 (560)
T d1kv9a2         517 AIMAGWG  523 (560)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
T ss_conf             9991778

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.29  E-value=7.1e-05  Score=43.12  Aligned_cols=82  Identities=13%  Similarity=0.196  Sum_probs=58.5

Q ss_pred             CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCE--EEEEECCCCC-E
Q ss_conf             983999992366268996059997003898789969999918981999976977412676408725--7999778976-3
Q 002564          536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSI--TALSLSPNMD-V  612 (907)
Q Consensus       536 dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v--~~l~~spdg~-~  612 (907)
                      .|.+.-+|+.+++.+.+...+. ++..-..+..+..++.++.||.++.+|..+|+.+-.++....+  .-+.+..+|+ |
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCEEEEECCCCCCEEEECCCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf             7759998078995873267799-974501697698699967999699999999868679889999621677999899999


Q ss_pred             EEEEEE
Q ss_conf             799873
Q 002564          613 LATAHV  618 (907)
Q Consensus       613 lat~~~  618 (907)
                      ++....
T Consensus       544 v~i~ag  549 (582)
T d1flga_         544 LGVTVG  549 (582)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
T ss_conf             999937

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.23  E-value=9.7e-05  Score=42.28  Aligned_cols=415  Identities=10%  Similarity=0.018  Sum_probs=187.3

Q ss_pred             CCEEEEEECCCCEEEEECCCCCCCCCCEEEEECC-----------CCCCCEEEECCCCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             9989999558829999548887665321269628-----------97552899828999789999966880999966899
Q 002564          103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD-----------DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK  171 (907)
Q Consensus       103 g~~l~s~~~dg~i~iWd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~  171 (907)
                      +..++.++.++.|.-+|..+++...    ++...           ........+..    ..++.++.++.+.-.|..+|
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W----~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~v~~~t~~g~l~alda~tG  148 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIW----TYDPQIDRSTGFKGCCDVVNRGVALWK----GKVYVGAWDGRLIALDAATG  148 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEE----EECCCCCGGGGGGSSSCSCCCCCEEET----TEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEECCCCEEEEEECCCCCEEE----EECCCCCCCCCCCCCCCCCCCCCEEEC----CCEEEEECCCCEEEECCCCC
T ss_conf             9999997899969999589998587----867988765333345665666523878----81899733654066616243


Q ss_pred             EEEEEECCCCCCE--EEEEECC--CCCEEEEEEC------CCEEEEEECCCCCEEEEEEECCCCC--E--------EEEE
Q ss_conf             1999992899987--9999969--9989999956------9949999910891489994069977--8--------9999
Q 002564          172 KKLYEFKGWGSSI--SSCVSSP--ALDVVAVGCS------DGKIHVHNVRYDEELVTFTHSMRGA--V--------TALA  231 (907)
Q Consensus       172 ~~~~~~~~h~~~I--~~l~~sp--~~~~la~g~~------dg~I~iwd~~~~~~~~~~~~~~~~~--v--------~~l~  231 (907)
                      +.+..........  ..+.-.|  ....++++..      .|.|..+|..+++.+.++.......  .        ....
T Consensus       149 ~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t  228 (573)
T d1kb0a2         149 KEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART  228 (573)
T ss_dssp             CEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             CCEECCCCCCCCCCEEEEECCEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             00101467568765078601027970627992134455432218998568865102553104567777775432234323


Q ss_pred             EECCCCC----------EEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCC
Q ss_conf             8019999----------799994998499998898602123412434683899995599999998399967999903799
Q 002564          232 FSSDGQP----------LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD  301 (907)
Q Consensus       232 fs~dg~~----------~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~  301 (907)
                      |.+++..          ...+...+..+..|-..........  ......-   -......++....+..-..|.+....
T Consensus       229 ~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~--~~~~~~g---~~~~~~svvAld~~tG~~~W~~q~~~  303 (573)
T d1kb0a2         229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHK--VRSPKGG---DNLYLASIVALDPDTGKYKWHYQETP  303 (573)
T ss_dssp             SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH--HHSTTCC---CCTTTTEEEEECTTTCCEEEEEESST
T ss_pred             CCCCCCEEECCCCCCCCCCCEECHHHCEEEECCCCCCCCCCC--CCCCCCC---CCCCCCEEEEECCCCHHEEECCCCCC
T ss_conf             588775466379876235611854338155114777544410--0034566---66664207996155000120244367


Q ss_pred             CCCCEEEECCCCCCCCEEEEEECCC---CEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEE
Q ss_conf             9861247414889999689993499---8999994899779998020243214202456698851020022104683348
Q 002564          302 GDPRLLRFRSGHSAPPLCIRFYANG---RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA  378 (907)
Q Consensus       302 ~~~~~~~~~~~h~~~v~~i~~~~~g---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  378 (907)
                      ..  ... . ....+........++   ..++.++.+|.+.++|..+++..........                .-...
T Consensus       304 ~d--~wd-~-d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~----------------~~~~~  363 (573)
T d1kb0a2         304 GD--NWD-Y-TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV----------------NWASG  363 (573)
T ss_dssp             TC--CSC-C-CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC----------------SSEEE
T ss_pred             CC--CCC-C-CCCCEEEECCEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCC----------------CCCCC
T ss_conf             51--120-0-1220144202001797236202125553168861243442231122566----------------43444


Q ss_pred             EEECCCCCCCCCCEEEEEECCCEEEEEEEEECEEC--CEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf             64022113454302898609960999990101104--2432059999986499999679989999947991999968889
Q 002564          379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG--EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG  456 (907)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~  456 (907)
                      +                  ......+.... ...+  .....+.......-...+++|+...+++...+....+......
T Consensus       364 ~------------------~~~~~~~~~~~-~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~  424 (573)
T d1kb0a2         364 Y------------------DKHGKPIGIAA-ARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKW  424 (573)
T ss_dssp             E------------------CTTSCEEECGG-GGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTC
T ss_pred             C------------------CCCCCEEEEEE-CCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCC
T ss_conf             2------------------11220000000-2346663378631567766655420887616985411154253115553


Q ss_pred             CCCEEEECCCCCCCCCCC-CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEEC
Q ss_conf             510144066622356767-7579999959999899995677099998798761222331865269999207988999938
Q 002564          457 ISRGSYLDMSERSNYAHN-GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD  535 (907)
Q Consensus       457 ~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~  535 (907)
                      ...........   .+.. .......-.+.     ....-|.+.-||..+++.+-......+...-..+-.+.++.+++.
T Consensus       425 ~~~~~~~~~~~---~g~~~~~~~~~~~~p~-----~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~  496 (573)
T d1kb0a2         425 EFNQAGPGKPQ---SGTGWNTAKFFNAEPP-----KSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA  496 (573)
T ss_dssp             CTTCCCTTSTT---GGGTCCCCEEECSSCC-----CSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT
T ss_pred             CCCCCCCCCCC---CCCCCCCCCCCCCCCC-----CCCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEECCCEEEEECC
T ss_conf             23557787531---0355322233456887-----778736178757877866705168898877607986998999779


Q ss_pred             CCEEEEEECCCCEEEEEEECCCCCE-EEEEECCCCC-EEEEEEC
Q ss_conf             9839999923662689960599970-0389878996-9999918
Q 002564          536 DLVIRLFDVVALRMVRKFEGHTDRI-TDFCFSEDGK-WLLSSGM  577 (907)
Q Consensus       536 dg~i~i~d~~~~~~~~~~~~h~~~I-~~i~fspdg~-~l~s~s~  577 (907)
                      |+.++.+|..+++.+.++.-..+.. .-+.|..||+ |++..+.
T Consensus       497 dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G  540 (573)
T d1kb0a2         497 DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVG  540 (573)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEEEEC
T ss_conf             99199999998868579989899451677999899999999937

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.20  E-value=0.00011  Score=41.87  Aligned_cols=137  Identities=10%  Similarity=-0.035  Sum_probs=72.0

Q ss_pred             EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCC
Q ss_conf             99995999989999567709999879876122233186526999920798899993898399999236626899605999
Q 002564          479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD  558 (907)
Q Consensus       479 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~  558 (907)
                      ..+++|+...++....+.................   .........+.... ......|.+.-+|..+++.+.+......
T Consensus       390 ~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~G~l~AiD~~TG~~~W~~~~~~~  465 (571)
T d2ad6a1         390 VDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQF---FVGATLAMYPGPNG-PTKKEMGQIRAFDLTTGKAKWTKWEKFA  465 (571)
T ss_dssp             BCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC---CCCEEEEEEECTTS-TTSCCCEEEEEECTTTCCEEEEEEESSC
T ss_pred             CCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCC---CCCCCEEECCCCCC-CCCCCCCCEEEECCCCCCEEEECCCCCC
T ss_conf             5207788862897655344334300245667753---21563033146677-6667756178853677846427678999


Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCEEE--EEECCCCC-EEEEEEECC
Q ss_conf             700389878996999991898199997697741267640872579--99778976-379987369
Q 002564          559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD-VLATAHVDQ  620 (907)
Q Consensus       559 ~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~v~~--l~~spdg~-~lat~~~d~  620 (907)
                      .... ..+-.+..++.++.|+.++.+|..+|+.+-.++....+.+  +.|..||+ |+++....|
T Consensus       466 ~~~g-~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g~G  529 (571)
T d2ad6a1         466 AWGG-TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVG  529 (571)
T ss_dssp             CCSB-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             CCCC-EEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEEEEEEECCC
T ss_conf             8756-059669979997789969999999986878998999965156489889999999990668

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.16  E-value=0.00013  Score=41.39  Aligned_cols=45  Identities=11%  Similarity=0.063  Sum_probs=19.2

Q ss_pred             CEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf             89999966880999966899199999289998799999699989999
Q 002564          152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAV  198 (907)
Q Consensus       152 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~  198 (907)
                      ++++..+ +|.|.+.|+.+++.. .+..+.+.+...+|||||+.||.
T Consensus        13 ~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf   57 (281)
T d1k32a2          13 DRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAI   57 (281)
T ss_dssp             TEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEE
T ss_pred             CEEEEEE-CCCEEEEECCCCCEE-EEECCCCCCCCEEECCCCCEEEE
T ss_conf             9999990-996899989999879-97669985267798789998999

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.10  E-value=0.00017  Score=40.64  Aligned_cols=135  Identities=12%  Similarity=0.011  Sum_probs=75.5

Q ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE
Q ss_conf             99996799899999479919999688895101440666223567677579999959999899995677099998798761
Q 002564          429 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL  508 (907)
Q Consensus       429 ~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~  508 (907)
                      ..+++|....+++...+................          ........+...+..   ......|.+.-+|..+++.
T Consensus       390 ~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~~~G~l~AiD~~TG~~  456 (571)
T d2ad6a1         390 VDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQ----------FFVGATLAMYPGPNG---PTKKEMGQIRAFDLTTGKA  456 (571)
T ss_dssp             BCEEETTTTEEEEEEECEEEEEEECCCCCCTTS----------CCCCEEEEEEECTTS---TTSCCCEEEEEECTTTCCE
T ss_pred             CCEECCCCCEEEEECCCCCCCCCCCCCCCCCCC----------CCCCCCEEECCCCCC---CCCCCCCCEEEECCCCCCE
T ss_conf             520778886289765534433430024566775----------321563033146677---6667756178853677846


Q ss_pred             EEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCC-CEEEEEECCCCC-EEEEEE
Q ss_conf             22233186526999920798899993898399999236626899605999-700389878996-999991
Q 002564          509 KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD-RITDFCFSEDGK-WLLSSG  576 (907)
Q Consensus       509 ~~~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~-~I~~i~fspdg~-~l~s~s  576 (907)
                      +-+.....+..+-.....+.++++++.|+.++-+|.++++.+.++.-... .-.-+.|..||+ |+++..
T Consensus       457 ~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         457 KWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             EEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EEECCCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEEEEEEE
T ss_conf             4276789998756059669979997789969999999986878998999965156489889999999990

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=0.00022  Score=40.01  Aligned_cols=37  Identities=24%  Similarity=0.213  Sum_probs=17.4

Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEE
Q ss_conf             8649999967998999994799199996888951014
Q 002564          425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS  461 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~  461 (907)
                      ....++.+++.-..+.+-+.-|.+++||+.++..+..
T Consensus       256 DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         256 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEE
T ss_conf             8477999643379999996675899997566628999

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.04  E-value=0.00023  Score=39.90  Aligned_cols=58  Identities=21%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCC----------CEEEEEEECCCEEEEE------ECCCCCEEEEEE
Q ss_conf             003898789969999918981999976977----------4126764087257999------778976379987
Q 002564          560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILA----------RQIDAIHVDVSITALS------LSPNMDVLATAH  617 (907)
Q Consensus       560 I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~----------~~i~~~~~~~~v~~l~------~spdg~~lat~~  617 (907)
                      -...+|...|.-..|.-.|..|.-|++...          ..++.+..|-.+-.+.      ..|+|++|++..
T Consensus       331 PLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         331 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             CCCCCCCCCCEEEEEEECCCEEEEEECCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             66203389842999861231699973440556644666773113543345788774576786788887899803

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.04  E-value=0.00023  Score=39.83  Aligned_cols=100  Identities=12%  Similarity=0.187  Sum_probs=50.1

Q ss_pred             EEEEEECCCCCEEEEEE-CCCEEEEEECCCC------------CEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEE
Q ss_conf             79999959999899995-6770999987987------------6122233186526999920798899993898399999
Q 002564          477 VVGVACDSTNTLMISAG-YHGDIKVWDFKGR------------DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD  543 (907)
Q Consensus       477 v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~------------~~~~~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d  543 (907)
                      ..++.++|||+++++++ .+.++.++|+.+-            ......+..-.....+|...|....+-.-|..|.-|+
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEE
T ss_conf             77338899997899938858957999822535665046884521796113576766203389842999861231699973


Q ss_pred             CCCC----------EEEEEEECCCCC-----EEEEEECCCCCEEEEEE
Q ss_conf             2366----------268996059997-----00389878996999991
Q 002564          544 VVAL----------RMVRKFEGHTDR-----ITDFCFSEDGKWLLSSG  576 (907)
Q Consensus       544 ~~~~----------~~~~~~~~h~~~-----I~~i~fspdg~~l~s~s  576 (907)
                      +...          ..+.++.-|-.+     ...-...|||+||++..
T Consensus       357 ~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         357 IEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             HHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             CCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             440556644666773113543345788774576786788887899803

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.00  E-value=0.00028  Score=39.33  Aligned_cols=85  Identities=11%  Similarity=0.116  Sum_probs=61.6

Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCE-EEEEECCCCC-EE
Q ss_conf             770999987987612223318652699992079889999389839999923662689960599970-0389878996-99
Q 002564          495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI-TDFCFSEDGK-WL  572 (907)
Q Consensus       495 dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I-~~i~fspdg~-~l  572 (907)
                      .|.+.-||+.+++.+-......+...-.+.-.+.++.+++.|+.++.+|..+++.+.++.-..... .-+.+..||+ ||
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCCEEEEECCCCEEEEECCCCCCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEE
T ss_conf             66468870778837310257888877405987998999778981999999998582799899995516779998999999


Q ss_pred             EEEECCC
Q ss_conf             9991898
Q 002564          573 LSSGMDG  579 (907)
Q Consensus       573 ~s~s~Dg  579 (907)
                      +..+..|
T Consensus       517 ~v~aG~g  523 (560)
T d1kv9a2         517 AIMAGWG  523 (560)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
T ss_conf             9991778

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.87  E-value=0.00047  Score=37.90  Aligned_cols=82  Identities=9%  Similarity=-0.004  Sum_probs=52.3

Q ss_pred             CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCC--EEEEEECCCCC-EE
Q ss_conf             8399999236626899605999700389878996999991898199997697741267640872--57999778976-37
Q 002564          537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMD-VL  613 (907)
Q Consensus       537 g~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~~--v~~l~~spdg~-~l  613 (907)
                      |.+.-||..+++.+.+... ..+...=..+..+..++.++.||.++.+|..+|+.+-.++....  -.-+.|..+|+ |+
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CEEEEEECCCCCEECCCCC-CCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEE
T ss_conf             5389980788856233278-888744146866997999789995999999998483699899995407768998999999


Q ss_pred             EEEEEC
Q ss_conf             998736
Q 002564          614 ATAHVD  619 (907)
Q Consensus       614 at~~~d  619 (907)
                      +....-
T Consensus       532 av~~G~  537 (596)
T d1w6sa_         532 AIYYGV  537 (596)
T ss_dssp             EEEECC
T ss_pred             EEEECC
T ss_conf             999367

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.73  E-value=0.00079  Score=36.45  Aligned_cols=81  Identities=14%  Similarity=0.049  Sum_probs=58.7

Q ss_pred             CEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCC-EEEEEECCCCC-EEE
Q ss_conf             7099998798761222331865269999207988999938983999992366268996059997-00389878996-999
Q 002564          496 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGK-WLL  573 (907)
Q Consensus       496 g~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~-I~~i~fspdg~-~l~  573 (907)
                      |.+.-||..+++.+-......+...-.++..+.++..|+.|+.++.+|..+++.+.++.-..+. -.-+.|..||+ |++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CEEEEEECCCCCEECCCCCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEE
T ss_conf             53899807888562332788887441468669979997899959999999984836998999954077689989999999


Q ss_pred             EEE
Q ss_conf             991
Q 002564          574 SSG  576 (907)
Q Consensus       574 s~s  576 (907)
                      ...
T Consensus       533 v~~  535 (596)
T d1w6sa_         533 IYY  535 (596)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             993

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.55  E-value=0.0014  Score=34.87  Aligned_cols=11  Identities=18%  Similarity=0.214  Sum_probs=4.8

Q ss_pred             CCCCCEEEEEE
Q ss_conf             78976379987
Q 002564          607 SPNMDVLATAH  617 (907)
Q Consensus       607 spdg~~lat~~  617 (907)
                      .+||+.++.++
T Consensus       352 ~~dG~v~v~GG  362 (387)
T d1k3ia3         352 LPDGRVFNGGG  362 (387)
T ss_dssp             CTTSCEEEEEC
T ss_pred             CCCCEEEEEEC
T ss_conf             88999999969

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.30  E-value=0.0028  Score=32.91  Aligned_cols=13  Identities=23%  Similarity=0.404  Sum_probs=7.8

Q ss_pred             EECCCCCEEEEEE
Q ss_conf             9878996999991
Q 002564          564 CFSEDGKWLLSSG  576 (907)
Q Consensus       564 ~fspdg~~l~s~s  576 (907)
                      ...+||+.++.|+
T Consensus       350 ~l~~dG~v~v~GG  362 (387)
T d1k3ia3         350 LLLPDGRVFNGGG  362 (387)
T ss_dssp             EECTTSCEEEEEC
T ss_pred             EECCCCEEEEEEC
T ss_conf             9988999999969

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.14  E-value=0.0042  Score=31.81  Aligned_cols=82  Identities=17%  Similarity=0.165  Sum_probs=60.6

Q ss_pred             CCEEEEEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCC-EEEEEECCCCC-EE
Q ss_conf             77099998798761222331865269999207988999938983999992366268996059997-00389878996-99
Q 002564          495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR-ITDFCFSEDGK-WL  572 (907)
Q Consensus       495 dg~i~iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~-I~~i~fspdg~-~l  572 (907)
                      .|.+.-+|+.+++.+-....+.+...-..+..+.++.+++.|+.++.+|.++++.+.++.-.... -.-+.+..+|+ |+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEEECCCCCCEEEECCCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEE
T ss_conf             77599980789958732677999745016976986999679996999999998686798899996216779998999999


Q ss_pred             EEEE
Q ss_conf             9991
Q 002564          573 LSSG  576 (907)
Q Consensus       573 ~s~s  576 (907)
                      +...
T Consensus       545 ~i~a  548 (582)
T d1flga_         545 GVTV  548 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
T ss_conf             9993

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.10  E-value=0.0045  Score=31.57  Aligned_cols=41  Identities=12%  Similarity=0.110  Sum_probs=22.2

Q ss_pred             CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC
Q ss_conf             77579999959999899995677099998798761222331
Q 002564          474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV  514 (907)
Q Consensus       474 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  514 (907)
                      .+-..++.+++.-..+.....-|.+.++|+.++.++..-+.
T Consensus       255 ~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRI  295 (327)
T d1utca2         255 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI  295 (327)
T ss_dssp             TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEC
T ss_conf             88477999643379999996675899997566628999404

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.97  E-value=0.006  Score=30.80  Aligned_cols=13  Identities=8%  Similarity=0.156  Sum_probs=5.9

Q ss_pred             CEEEEECCCCEEE
Q ss_conf             4999988986021
Q 002564          248 VISIWNLEKRRLQ  260 (907)
Q Consensus       248 ~I~iwd~~~~~~~  260 (907)
                      .++++|+.+++.+
T Consensus       152 ~l~v~Dl~tg~~~  164 (430)
T d1qfma1         152 TIKFMKVDGAKEL  164 (430)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             EEEEECCCCCEEC
T ss_conf             4677416764031

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.0082  Score=29.94  Aligned_cols=14  Identities=7%  Similarity=0.076  Sum_probs=5.1

Q ss_pred             CEEEEEECCCCEEE
Q ss_conf             83999992366268
Q 002564          537 LVIRLFDVVALRMV  550 (907)
Q Consensus       537 g~i~i~d~~~~~~~  550 (907)
                      +.|...|..+++..
T Consensus       229 ~~I~~~~~~~g~~~  242 (263)
T d1npea_         229 NSVIAMDLAISKEM  242 (263)
T ss_dssp             TEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCCC
T ss_conf             97999989899510

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.029  Score=26.41  Aligned_cols=249  Identities=6%  Similarity=-0.073  Sum_probs=0.0

Q ss_pred             EEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-CEEEEEECCC----CCEEEEEEECCCCCEE
Q ss_conf             9999668809999668991999992899987999996999899999569-9499999108----9148999406997789
Q 002564          154 VIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD-GKIHVHNVRY----DEELVTFTHSMRGAVT  228 (907)
Q Consensus       154 l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d-g~I~iwd~~~----~~~~~~~~~~~~~~v~  228 (907)
                      ++.-+....|+..++.+........+ ...+..+.|.+..+.+.....+ +.|.-.++..    .......... ...+.
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~~~-~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~-~~~p~   80 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPD   80 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-CSCCC
T ss_pred             EEEEECCCEEEEEECCCCCCEEEECC-CCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECC-CCCCC
T ss_conf             99997877189998999852664179-98559999980899999999979979999935788876148998489-99854


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEE
Q ss_conf             99980199997999949984999988986021234124346838999955999999983999679999037999861247
Q 002564          229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR  308 (907)
Q Consensus       229 ~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~  308 (907)
                      .+++.+.+..+..+-...+.|.+.++.......... ........++..|...++........-+++.......  ....
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~-~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs--~~~~  157 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYS  157 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEEE
T ss_pred             EEEEEECCCEEEEEECCCCEEEEEECCCCEEEEEEC-CCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCC--CEEC
T ss_conf             689864265289995489999857648953788872-7998833699980039488712699730268636888--3441


Q ss_pred             ECCCCCCCCEEEEEECCCCEEEEE-ECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCC
Q ss_conf             414889999689993499899999-4899779998020243214202456698851020022104683348640221134
Q 002564          309 FRSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER  387 (907)
Q Consensus       309 ~~~~h~~~v~~i~~~~~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  387 (907)
                      .....-..+..+++.+.+..|+.+ ...+.|...++....                                        
T Consensus       158 l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~----------------------------------------  197 (266)
T d1ijqa1         158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN----------------------------------------  197 (266)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----------------------------------------
T ss_pred             CCCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCC----------------------------------------
T ss_conf             2004532016998613356999952896799999899997----------------------------------------


Q ss_pred             CCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCC
Q ss_conf             54302898609960999990101104243205999998649999967998999994799199996888951014406662
Q 002564          388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE  467 (907)
Q Consensus       388 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~  467 (907)
                                                ...+............+++. .+....+-..++.|...+..++.....+.    
T Consensus       198 --------------------------~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~----  246 (266)
T d1ijqa1         198 --------------------------RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA----  246 (266)
T ss_dssp             --------------------------CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE----
T ss_pred             --------------------------EEEEEECCCCCCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEE----
T ss_conf             --------------------------79999389855664799998-99999998999969999998996159977----


Q ss_pred             CCCCCCCCCEEEEEE
Q ss_conf             235676775799999
Q 002564          468 RSNYAHNGEVVGVAC  482 (907)
Q Consensus       468 ~~~~~h~~~v~~i~~  482 (907)
                          .....+.++..
T Consensus       247 ----~~~~~p~~i~v  257 (266)
T d1ijqa1         247 ----ENLLSPEDMVL  257 (266)
T ss_dssp             ----CSCSCCCCEEE
T ss_pred             ----CCCCCCEEEEE
T ss_conf             ----68999528999

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.52  E-value=0.037  Score=25.75  Aligned_cols=114  Identities=13%  Similarity=0.128  Sum_probs=59.7

Q ss_pred             CEEEEEECCCCCEEEEEEC-----CCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEC------------
Q ss_conf             8799999699989999956-----99499999108914899940699778999980199997999949------------
Q 002564          183 SISSCVSSPALDVVAVGCS-----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS------------  245 (907)
Q Consensus       183 ~I~~l~~sp~~~~la~g~~-----dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~------------  245 (907)
                      .+...++||+++++|.+-.     ...++++|+.+++.+......  .....++|.+|++.++.+.-.            
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             EECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCCC--CCCCCEEECCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             334258537898799995566672104677416764031442224--323641785799899999762666765443334


Q ss_pred             ---CCCEEEEECCCCEEEE--EEEC-CCCCCEEEEEEECCCCEEEEEC---CCCCEEEEECC
Q ss_conf             ---9849999889860212--3412-4346838999955999999983---99967999903
Q 002564          246 ---SGVISIWNLEKRRLQS--VIRE-AHDNAIISLHFFANEPVLMSAS---ADNSIKMWIFD  298 (907)
Q Consensus       246 ---dg~I~iwd~~~~~~~~--~~~~-~h~~~V~~l~~~~~~~~l~s~~---~d~~i~iw~~~  298 (907)
                         ...+..+.+.+.....  .+.. .....+..+..+.++.+++...   .+....+|.++
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d  265 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD  265 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEE
T ss_conf             57863389998898865310022323577257753026876245687643677647999951

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.20  E-value=0.12  Score=22.42  Aligned_cols=86  Identities=17%  Similarity=0.208  Sum_probs=32.0

Q ss_pred             EEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCC-----CEEEEEEEC--CCCCEEEEEEC--CC--CCEEEEEECCC
Q ss_conf             233186526999920798899993898399999236-----626899605--99970038987--89--96999991898
Q 002564          511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-----LRMVRKFEG--HTDRITDFCFS--ED--GKWLLSSGMDG  579 (907)
Q Consensus       511 ~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~-----~~~~~~~~~--h~~~I~~i~fs--pd--g~~l~s~s~Dg  579 (907)
                      .+.....+..|.+....+.|.++-++..++.++...     ...+....+  ..+.+-.++.-  .+  |-+|+|.-.+.
T Consensus       175 ~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n  254 (353)
T d1h6la_         175 AFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNS  254 (353)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             CCCCCCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCC
T ss_conf             35888862169981788949995475523888804577766224311367544578545379984799859999737997


Q ss_pred             CEEEEECCC-CCEEEEEE
Q ss_conf             199997697-74126764
Q 002564          580 SLRIWDVIL-ARQIDAIH  596 (907)
Q Consensus       580 ~I~iwd~~~-~~~i~~~~  596 (907)
                      +..+||..+ .+.+..|+
T Consensus       255 ~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         255 SYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEEEEESSTTCCEEEEEE
T ss_pred             EEEEEECCCCCCCCCEEE
T ss_conf             699995678865332599

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.72  E-value=0.23  Score=20.60  Aligned_cols=31  Identities=13%  Similarity=0.212  Sum_probs=14.2

Q ss_pred             CCEEEEEECCCCCEEEEEE-CCCCEEEEECCC
Q ss_conf             8649999967998999994-799199996888
Q 002564          425 TAVKACTISACGNFAVLGT-AGGWIERFNLQS  455 (907)
Q Consensus       425 ~~v~~~~~s~~g~~l~~g~-~dg~i~i~~~~~  455 (907)
                      .....++++|++++++++. ..+.|+.|++..
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCCEEEECCCCCEEEEEECCCCEEEEEEECC
T ss_conf             74643488899999999967889399999689

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.71  E-value=0.23  Score=20.60  Aligned_cols=13  Identities=38%  Similarity=0.544  Sum_probs=6.3

Q ss_pred             CCEEEEEECCCCC
Q ss_conf             9700389878996
Q 002564          558 DRITDFCFSEDGK  570 (907)
Q Consensus       558 ~~I~~i~fspdg~  570 (907)
                      +++.++++.|||.
T Consensus       405 ~R~rdv~~gpDGs  417 (450)
T d1crua_         405 NRYRDVIASPDGN  417 (450)
T ss_dssp             SCEEEEEECTTSS
T ss_pred             CCCEEEEECCCCC
T ss_conf             7864789989998