Citrus Sinensis ID: 002597

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900--
MAESRRSGDQSGIVVKNRSSSGCLIVRKKSDDVSVAGSSGAQKGFRSKKGKKRPRMVMSDSGSSDELLMPPRRRVGPETIRVCNGLSGLEKVVVGEESDFGRNRERDRDRDTVERVRRNEDGLFGRTEGQSDRKRNRLDVFEFDEYDGSDKEIMMSQKHLGDTRRDIGGRRFFGGSMALGRGGIERELESGSGRQVVVDKRKNLYFERTNSFNQGGMNRFGMDRDAGRSPISLLREKYSGNSDGPIRLQGKNGVLKVMVNKKKKVGEPVKSFDHAGTEANCSSSRIEDKVKRNVPIHHSSYLETEVLEKPCSFLRKEKNQLNLRKSLSTKKSKDDDSDSADSDTAPKLGPKRMEACKSVKEVSSESEKTPGGKLTLSRIKEGKARRGSGTEKQKLRERIRGMLVEAGWTIDYRPRKNRDYLDAVYINPTGTAYWSIIKAYDALTKQLNDEEDEAKPSADGSPFTPLPDEVLSQLTRKTRKKIEKEMKKKQRDGSQSFSTRETSARRTSSARRDEDSMGSGNHEEKLSSFLKQGGKSSKSKMNENGVVSQNPKGLSSTHLPDTDENPSSTSGSHQLHGRKSRKLGRCTLLIRNSNVGPNSETDGFVPYAGKLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKHELEAGLSWSLIHRSDEDSDTSLRGLPQRVECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSG
cccccccccccccEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccEEccccccccccccccEEcccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEccccccccccEEEcccccEEEEHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccEEEEEEccccEEEEEEEEEEccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHcccc
ccccccccccccEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccEEEccccccccccccccccccccEEEEEcEEEEEEcccccccccccccccccccccccccEEccccEEEccccEEEHHHccccccccccccccccHHHHHHHHcccccccccccccccccHHHccccccccEcccccccccHHHccccccccccccccccccccEEEcccccccccHHcHHHHccccccccEEEccccEEEEEEEcccccccccccccccccccccccccccHHcEcccccccccccccEEcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccEHHHHHHHccccccccEEEEEcccccEEEEEEEEEccEEEEEcccEEEcHHHHHHHcccccccccHHEEEcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccEcccccEEEEEcccccHHHHHHcccccccccccccccccccEcccccccccccccccccEEEEEccccHHHccHccccccccccccccccccccccccHHHHHHHHHHHccccccccccEEEEEEEccccccccHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccccHEEEccc
maesrrsgdqsgivvknrsssgclivrkksddvsvagssgaqkgfrskkgkkrprmvmsdsgssdellmpprrrvgpetirvcnglsglekvvvgeesdfgrnrerdrdrdTVERVRRnedglfgrtegqsdrkrnrldvfefdeydgsdkEIMMSQKHlgdtrrdiggrrffggsmalgrggierelesgsgrqVVVDKRKNLYFERtnsfnqggmnrfgmdrdagrspisllrekysgnsdgpirlqgkNGVLKVMVNKkkkvgepvksfdhagteancsssriedkvkrnvpihhssyletevlekPCSFLRKEKNQLNLRKSLstkkskdddsdsadsdtapklgpkrmEACKSVKEvssesektpggkltLSRIkegkarrgsgteKQKLRERIRGMLVeagwtidyrprknrdyldavyinptgTAYWSIIKAYDALTKQLNdeedeakpsadgspftplpdevLSQLTRKTRKKIEKEMKKkqrdgsqsfstretsarrtssarrdedsmgsgnhEEKLSSFLkqggksskskmnengvvsqnpkglssthlpdtdenpsstsgshqlhgrksrklgrctllirnsnvgpnsetdgfvpyagkLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEgwitrdgihcgccskiltvskfeihagsklrqpfqniyldsgvSLLQCQIDAWNKlkesesigfesvdvdgddpnddtcgicgdggdliccdgcpstfhqscldiqmlppgdwhcpnctckfcglageddaegddtttsallpcamcEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKHELEAGLSWSlihrsdedsdtslrglpqrveCNSKLAVALNVmdecflpivdrrsgiNLIHNVLYNSG
maesrrsgdqsgivvknrsssgclivrkksddvsvagssgaqkgfrskkgkkrprmvmsdsgssdellmpprrrvgpETIRvcnglsglekvvvgeesdfgrnrerdrdrdtvervrrnedglfgrtegqsdrkrnrldvfefdeydgsdkeIMMSQkhlgdtrrdiggrRFFGGSMALGrggierelesgsgrqvvvdkRKNLYfertnsfnqggmnrfgmdRDAGRSPISLLRekysgnsdgpirlqgkngVLKVMVNKKkkvgepvksfdhagteancsssriedkvkrnvpihhssyletevleKPCSFLRKEknqlnlrkslstkkskdddsdsadsdtapklgpkrmEACKSvkevssesektpggkltlsrikegkarrgsgtekqklrerirgmlveagwtidyrprknrdylDAVYINPTGTAYWSIIKAYDALTKQLNDEEDEAkpsadgspftplpdevlsqltRKTRKKIEkemkkkqrdgsqsfstretsarrtssarrdedsmgsgnheekLSSFLKQGGKSSKSKMNENGVVSQNPKGLSSTHLPDTDENPsstsgshqlhgrksrklgrCTLLIrnsnvgpnsetdGFVPYAGKLTLLSWLIDSgtvqlsqkvqymnrRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFesvdvdgddpnDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKHELEAGLSWSLIHRSDEDSDTSLRGLPQRVECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSG
MAESRRSGDQSGIVVKNRSSSGCLIVRKKSDDVSVAGSSGAQKGFRSKKGKKRPRMVMSDSGSSDELLMPPRRRVGPETIRVCNGLSGLEKVVVGEESDFGrnrerdrdrdtvervrrnedGLFGRTEGQSDRKRNRLDVFEFDEYDGSDKEIMMSQKHLgdtrrdiggrrffggSMALGRGGIERELESGSGRQVVVDKRKNLYFERTNSFNQGGMNRFGMDRDAGRSPISLLREKYSGNSDGPIRLQgkngvlkvmvnkkkkvgEPVKSFDHAGTEANCSSSRIEDKVKRNVPIHHSSYLETEVLEKPCSFLRKEKNQLNLRkslstkkskdddsdsadsdtaPKLGPKRMEACksvkevssesekTPGGKLTLSRIKEGKARRGSGTEKQKLRERIRGMLVEAGWTIDYRPRKNRDYLDAVYINPTGTAYWSIIKAYDALTKQLNDEEDEAKPSADGSPFTPLPDEVLSQLtrktrkkiekemkkkQRDGSQSFstretsarrtssarrdedsMGSGNHEEKLSSFLKQGGKSSKSKMNENGVVSQNPKGLSSTHLPDTDENPSSTSGSHQLHGRKSRKLGRCTLLIRNSNVGPNSETDGFVPYAGKLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVdvdgddpnddtcgicgdggdliccdgcPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLageddaegddtttSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKHELEAGLSWSLIHRSDEDSDTSLRGLPQRVECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSG
******************************************************************************TIRVCNGLSGLEKVVV**************************************************************************GRRFFGGSMAL****************VVVDKRKNLYFE***********************************************L*********************************************YLETEVL*******************************************************************************************IRGMLVEAGWTIDYRPRKNRDYLDAVYINPTGTAYWSIIKAYDAL********************************************************************************************************************************************GRCTLLIRNSNVGPNSETDGFVPYAGKLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVD****NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKHELEAGLSWSLI*****************VECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLY***
******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LVEAGWTIDYRPRK**********NPTGTAYWSIIKAYD*************************************************************************************************************************************************************************LTLLSWLIDSGTVQLSQKV**M******VMLEGWITRDGIHCGCCSKILTVSKFEIH*************************************************NDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLAGED*******TTSALLPCAMCEKKYHKLCMQEMD****NLTGLVTSFCGRKCQELSE*LQ******HELEAGLSWSLI*****************VECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNS*
*************VVKNRSSSGCLIVRKKS***********************************ELLMPPRRRVGPETIRVCNGLSGLEKVVVGE*****************ERVRRNEDGLFGRTEGQSDRKRNRLDVFEFDEYDGSDKEIMMSQKHLGDTRRDIGGRRFFGGSMALGRGGIERELESGSGRQVVVDKRKNLYFERTNSFNQGGMNRFGMDRDAGRSPISLLREKYSGNSDGPIRLQGKNGVLKVMVNKKKKVGEPVKSFDHAGTEANCSSSRIEDKVKRNVPIHHSSYLETEVLEKPCSFLRKEKNQLNLRKS********************KLGPKRME*******************LTLSRIKE*************LRERIRGMLVEAGWTIDYRPRKNRDYLDAVYINPTGTAYWSIIKAYDALTKQL**************PFTPLPDEVLSQLTRKTRK****************************************************************************************************RKLGRCTLLIRNSNVGPNSETDGFVPYAGKLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKHELEAGLSWSLIHRSDEDSDTSLRGLPQRVECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSG
***********GIVVKNRSSSGCLIVRKKSDDVSVAGSSGAQKG**S****KR*********SSDELLMPPRRRVGPETIRVCNGLSGLEKV******************DTVERVRRNEDGLFGRTEGQSDRKRNRLDVFEFDEYDGSDKEIM*SQ*HLGDTRRDIGGRRFFGGSMALGRGGIERELESGSGRQV*VDKRKNLYFERTNSFNQGGMNRFGMDRD***S****L******NSDGPIRLQGKNGVLKVMVNKK***************************VKRNV*IH*S**LETEVLEKPCS*****************************************************************************TEKQKLRERIRGMLVEAGWTIDYRPRKNRDYLDAVYINPTGTAYWSIIKAYDALTKQLND*************FTPLPDEVLSQLTRKTRKKIEKE*******************************************************************************************************************TDGFVPYAGKLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESE************DPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKHELEAGLSWSLIHRSDEDSDTSLRGLPQRVECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSG
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAESRRSGDQSGIVVKNRSSSGCLIVRKKSDDVSVAGSSGAQKGFRSKKGKKRPRMVMSDSGSSDELLMPPRRRVGPETIRVCNGLSGLEKVVVGEESDFGRNRERDRDRDTVERVRRNEDGLFGRTEGQSDRKRNRLDVFEFDEYDGSDKEIMMSQKHLGDTRRDIGGRRFFGGSMALGRGGIERELESGSGRQVVVDKRKNLYFERTNSFNQGGMNRFGMDRDAGRSPISLLREKYSGNSDGPIRLQGKNGVLKVMVNKKKKVGEPVKSFDHAGTEANCSSSRIEDKVKRNVPIHHSSYLETEVLEKPCSFLRKEKNQLNLRKSLSTKKSKDDDSDSADSDTAPKLGPKRMEACKSVKEVSSESEKTPGGKLTLSRIKEGKARRGSGTEKQKLRERIRGMLVEAGWTIDYRPRKNRDYLDAVYINPTGTAYWSIIKAYDALTKQLNDEEDEAKPSADGSPFTPLPDEVLSQLTRKTRKKIEKEMKKKQRDGSQSFSTRETSARRTSSARRDEDSMGSGNHEEKLSSFLKQGGKSSKSKMNENGVVSQNPKGLSSTHLPDTDENPSSTSGSHQLHGRKSRKLGRCTLLIRNSNVGPNSETDGFVPYAGKLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAEGDDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKHELEAGLSWSLIHRSDEDSDTSLRGLPQRVECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query902 2.2.26 [Sep-21-2011]
Q6PDQ2 1915 Chromodomain-helicase-DNA yes no 0.070 0.033 0.430 7e-11
O97159 1982 Chromodomain-helicase-DNA yes no 0.050 0.023 0.479 1e-10
O16102 892 Chromodomain-helicase-DNA no no 0.049 0.050 0.489 2e-10
Q14839 1912 Chromodomain-helicase-DNA yes no 0.054 0.025 0.490 2e-10
Q9UPN91127 E3 ubiquitin-protein liga no no 0.064 0.051 0.446 4e-10
Q99PP71142 E3 ubiquitin-protein liga no no 0.064 0.050 0.446 5e-10
Q8TDI0 1954 Chromodomain-helicase-DNA no no 0.048 0.022 0.5 5e-10
Q96QT6 1004 PHD finger protein 12 OS= no no 0.052 0.046 0.509 2e-09
Q5SPL2 1003 PHD finger protein 12 OS= no no 0.052 0.046 0.509 2e-09
Q6E2N31163 E3 ubiquitin-protein liga no no 0.052 0.040 0.489 6e-09
>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1 Back     alignment and function desciption
 Score = 70.1 bits (170), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 8/72 (11%)

Query: 699 KESESIGFESVDVDGDDPNDD------TCGICGDGGDLICCDGCPSTFHQSCLDIQM--L 750
           KE  S G E ++  G DP ++       C +C DGG+L+CCD CPS++H  CL+  +  +
Sbjct: 417 KEDNSEGEEILEEVGGDPEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEI 476

Query: 751 PPGDWHCPNCTC 762
           P G+W CP CTC
Sbjct: 477 PNGEWLCPRCTC 488
Component of the histone deacetylase NuRD complex which participates in the remodeling of chromatin by deacetylating histones.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2 Back     alignment and function description
>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3 Back     alignment and function description
>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2 Back     alignment and function description
>sp|Q9UPN9|TRI33_HUMAN E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens GN=TRIM33 PE=1 SV=3 Back     alignment and function description
>sp|Q99PP7|TRI33_MOUSE E3 ubiquitin-protein ligase TRIM33 OS=Mus musculus GN=Trim33 PE=1 SV=2 Back     alignment and function description
>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=2 SV=1 Back     alignment and function description
>sp|Q96QT6|PHF12_HUMAN PHD finger protein 12 OS=Homo sapiens GN=PHF12 PE=1 SV=2 Back     alignment and function description
>sp|Q5SPL2|PHF12_MOUSE PHD finger protein 12 OS=Mus musculus GN=Phf12 PE=2 SV=1 Back     alignment and function description
>sp|Q6E2N3|TRI33_DANRE E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio GN=trim33 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query902
449444240 1314 PREDICTED: uncharacterized protein LOC10 0.977 0.671 0.611 0.0
255552191 1604 hypothetical protein RCOM_0912170 [Ricin 0.983 0.552 0.616 0.0
359477348 1547 PREDICTED: uncharacterized protein LOC10 0.932 0.543 0.610 0.0
356540325 1254 PREDICTED: uncharacterized protein LOC10 0.946 0.681 0.597 0.0
356540327 1301 PREDICTED: uncharacterized protein LOC10 0.968 0.671 0.583 0.0
356495799 1314 PREDICTED: uncharacterized protein LOC10 0.968 0.665 0.577 0.0
449492632 1213 PREDICTED: uncharacterized LOC101210263 0.840 0.624 0.625 0.0
334186543 1138 Acyl-CoA N-acyltransferase with RING/FYV 0.940 0.745 0.495 0.0
297737048 1264 unnamed protein product [Vitis vinifera] 0.754 0.538 0.519 0.0
110741207 1138 hypothetical protein [Arabidopsis thalia 0.864 0.685 0.466 0.0
>gi|449444240|ref|XP_004139883.1| PREDICTED: uncharacterized protein LOC101210263 [Cucumis sativus] Back     alignment and taxonomy information
 Score = 1039 bits (2687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/907 (61%), Positives = 664/907 (73%), Gaps = 25/907 (2%)

Query: 1   MAESRRSGDQSGIVVKNRSSSGCLIVRKKSDDVSVAGSSGAQKGFRSKKGKKRPRMVMSD 60
           M +  RSG  SG++VK R+SSGCLIVRKK D +  AGSS A +   +KK KKRPR+V+SD
Sbjct: 1   MEDGVRSGGSSGVLVKTRNSSGCLIVRKKEDGLGGAGSS-ASRLLNAKKEKKRPRLVLSD 59

Query: 61  SGSSDELLMPPRRRVGPETIRVCNGLSGLEKVVVGEESDFGRNRERDRDRDTVERVRRNE 120
           SGSSDE+L+P RRRVGPETIRVCNGL+   K V+      G  R++DR    ++ V+RN+
Sbjct: 60  SGSSDEVLLPNRRRVGPETIRVCNGLNSFGKDVLDGS---GSIRKKDR----LQYVKRND 112

Query: 121 DGLFGRTEGQSDRKR-NRLDVFEFDEYDGSDKEIMMSQKHLGDTRRDIGGRRFFGGSMAL 179
           DGL  R +    R+  + LDVFEFDEYD  D +     KH  D+     G R F G+M L
Sbjct: 113 DGLINRMDLDGLRRNMDTLDVFEFDEYDEIDGD-ARRMKHFNDS-----GERRFVGAMKL 166

Query: 180 GRGGIERELESGSGRQVVVDKRKNLYFERTNSFNQGGMNR---FGMDRDAGRSPISLLRE 236
            + GIERE  + S R  +VDKRKNLY E+TNSF++   +R   +  D D    P  LLR+
Sbjct: 167 PQSGIEREFGTTSSRHGLVDKRKNLYAEQTNSFDRDRPSRKITYDSDDDGPHLPTPLLRD 226

Query: 237 KYSGNSDGPIRLQGKNGVLKVMVNKKKKVGEPVKSFDHAGTEANCSSSRIEDKVKRNVPI 296
           K+ G+SD  IR+QGKNGVLKVMVNKKK V      ++H   E +    R ED +KR V +
Sbjct: 227 KFRGHSDEAIRVQGKNGVLKVMVNKKKNVSGASDIYEHRKLEESRKGLRTEDTLKRKVLV 286

Query: 297 HHSSYLETEVLEKPCSFLRKEKNQLNLRKSLSTKKSKDDDSDSADSDTAPKLGPKRMEAC 356
             S + ET+   K   F + EK+  + + S STK  K    DS D   + K   K +EA 
Sbjct: 287 SPSLHPETKPNVKQDLFSKPEKDHTDFQTSASTKNVKGSSWDSGDGSVSLKARKKVVEAQ 346

Query: 357 KSVKEVSSESEKTPGGKLTLSRIKEGKARRGSGTEKQKLRERIRGMLVEAGWTIDYRPRK 416
           KS K+ + E EK P      S  KEGK +RGSGTEKQKLRERIRGML+ AGW IDYRPR+
Sbjct: 347 KSTKKAACEVEKVPCEDTPPSTAKEGKVKRGSGTEKQKLRERIRGMLLGAGWKIDYRPRR 406

Query: 417 NRDYLDAVYINPTGTAYWSIIKAYDALTKQLNDEEDEAKPSADGSPFTPLPDEVLSQLTR 476
           NRDYLDAVY+NPTGTAYWSIIKAYDAL KQLN E  EAKP ADGS FTP+ D++LSQLTR
Sbjct: 407 NRDYLDAVYVNPTGTAYWSIIKAYDALQKQLN-EGAEAKPIADGS-FTPISDDILSQLTR 464

Query: 477 KTRKKIEKEMKKKQRDGSQSFSTRETSARRTSSARRDEDSMGSGNHEEKLSSFLKQGGKS 536
           KTRKKIEKE K K+RD S S + ++ SA R++  + D DSM S ++EEKLSSF+KQGGKS
Sbjct: 465 KTRKKIEKEWKNKRRDDSDSENAKDASALRSAGTKNDMDSMDSDSNEEKLSSFIKQGGKS 524

Query: 537 SKSKMNENGVVSQNPKG-LSSTHLPDTDENPSSTSGSHQLHGRKSRKLGRCTLLIRNSNV 595
            K+K+N+NG+ S N KG  SS +  D     SS S S  LHGRK RKLG   LL+R S+ 
Sbjct: 525 LKNKLNDNGLPSVNSKGQTSSKYSRDAIVKSSSGSNSRVLHGRKGRKLG---LLVRGSSR 581

Query: 596 GPNSETDGFVPYAGKLTLLSWLIDSGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCC 655
           G +SE DG+VPY GK TLLSWLIDSGTVQLSQKV+YMNRR+T+VMLEGWITRDGIHCGCC
Sbjct: 582 GLDSENDGYVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCC 641

Query: 656 SKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNKLKESESIGFESVDVDGDD 715
           SKILTVSKFEIHAGSKLRQPFQNI+L+SG+SLLQCQ DAWN+ +ES+ + F +V++DGDD
Sbjct: 642 SKILTVSKFEIHAGSKLRQPFQNIFLESGLSLLQCQRDAWNRQEESKLLSFHTVEIDGDD 701

Query: 716 PNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLAGEDDAEG 775
           PNDDTCGICGDGGDLICCDGCPSTFHQSCLDI + PPGDWHCPNCTCK+CG+A  D  +G
Sbjct: 702 PNDDTCGICGDGGDLICCDGCPSTFHQSCLDILIPPPGDWHCPNCTCKYCGVASIDICQG 761

Query: 776 DDTTTSALLPCAMCEKKYHKLCMQEMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKH 835
           D+T+ S +  C +CEKK+H+ C  EMD    + +GLVTSFCG+ C+EL E LQK LGVKH
Sbjct: 762 DNTSVSEISTCILCEKKFHESCNLEMDTPVHS-SGLVTSFCGKSCRELFESLQKNLGVKH 820

Query: 836 ELEAGLSWSLIHRSDEDSDTSLRGLPQRVECNSKLAVALNVMDECFLPIVDRRSGINLIH 895
           EL+AG SWSLI R+ EDSD S+RGL QR+E NSKLAVAL VMDECFLPIVDRRSGINLIH
Sbjct: 821 ELDAGFSWSLIRRTSEDSDVSVRGLSQRIESNSKLAVALTVMDECFLPIVDRRSGINLIH 880

Query: 896 NVLYNSG 902
           NVLYN G
Sbjct: 881 NVLYNCG 887

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255552191|ref|XP_002517140.1| hypothetical protein RCOM_0912170 [Ricinus communis] gi|223543775|gb|EEF45303.1| hypothetical protein RCOM_0912170 [Ricinus communis] Back     alignment and taxonomy information
>gi|359477348|ref|XP_002278432.2| PREDICTED: uncharacterized protein LOC100247619 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356540325|ref|XP_003538640.1| PREDICTED: uncharacterized protein LOC100801320 [Glycine max] Back     alignment and taxonomy information
>gi|356540327|ref|XP_003538641.1| PREDICTED: uncharacterized protein LOC100801863 [Glycine max] Back     alignment and taxonomy information
>gi|356495799|ref|XP_003516760.1| PREDICTED: uncharacterized protein LOC100814247 [Glycine max] Back     alignment and taxonomy information
>gi|449492632|ref|XP_004159054.1| PREDICTED: uncharacterized LOC101210263 [Cucumis sativus] Back     alignment and taxonomy information
>gi|334186543|ref|NP_193228.6| Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] gi|225898777|dbj|BAH30519.1| hypothetical protein [Arabidopsis thaliana] gi|332658123|gb|AEE83523.1| Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297737048|emb|CBI26249.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|110741207|dbj|BAF02154.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query902
TAIR|locus:2201021 1138 AT1G05380 "AT1G05380" [Arabido 0.562 0.445 0.516 3.3e-153
TAIR|locus:2147391 1179 AT5G36740 [Arabidopsis thalian 0.383 0.293 0.381 2e-85
TAIR|locus:2832118 1193 AT5G36670 [Arabidopsis thalian 0.383 0.290 0.381 2.3e-85
TAIR|locus:2086395 1189 ROS4 "AT3G14980" [Arabidopsis 0.352 0.267 0.331 2.1e-44
TAIR|locus:2178828 1065 AT5G58610 "AT5G58610" [Arabido 0.099 0.084 0.4 3.2e-24
TAIR|locus:2163961 557 AT5G63900 "AT5G63900" [Arabido 0.160 0.260 0.283 9.8e-15
TAIR|locus:2040550 1007 AT2G36720 "AT2G36720" [Arabido 0.129 0.116 0.304 7.2e-12
TAIR|locus:2201021 AT1G05380 "AT1G05380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1343 (477.8 bits), Expect = 3.3e-153, Sum P(3) = 3.3e-153
 Identities = 270/523 (51%), Positives = 333/523 (63%)

Query:   380 KEGKARRGSGTEKQKLRERIRGMLVEAGWTIDYRPRKNRDYLDAVYINPTGTAYWSIIKA 439
             +E + RRG GT+KQ+LRERI+GML +AGWTIDY+PR+N+ YLDAVY+NP+GTAYWSIIKA
Sbjct:   300 EERRGRRGGGTDKQRLRERIKGMLTDAGWTIDYKPRRNQSYLDAVYVNPSGTAYWSIIKA 359

Query:   440 YDALTKQLNDEEDEAKPSADGSPFTPLPDEVLSQLXXXXXXXXXXXXXXXQRDGSQSFXX 499
             YDAL KQL DE  +A+P  D +    + +E++++L               +++ S S   
Sbjct:   360 YDALLKQLKDEGVDARPRKDTAAVASVSEEIVNKLARKAKKTRSEMTKKWKQNSSGSDSE 419

Query:   500 XXXXXXXXXXXXXXXXXMGSGNHEEKLSSFLKQGGKSSKSKMNENGVVSQNPKGLSSTHL 559
                                    EE++ S +K GGKS+K     NG         S   L
Sbjct:   420 NKSEGGAYTDTS-----------EERIRSSIKLGGKSTKK--GRNGADWDELHKKSKRSL 466

Query:   560 PDTDENPSSTSGSHQLHGRKSRKLGRCTLLIRNSNVGPNSETDGFVPYAGKLTLLSWLID 619
                +  PS  S SH LHGRK++K+GRCTLL+R+S    N   +GF PY+GK TLLSWLI+
Sbjct:   467 YYNNARPSCGSDSHYLHGRKTKKIGRCTLLVRSSKDKKNPAINGFNPYSGKRTLLSWLIE 526

Query:   620 SGTVQLSQKVQYMNRRRTKVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNI 679
             SG VQL QKVQYM RR  KVMLEGWITR+GIHC CCSKILTVS+FEIHAGSK  QPFQNI
Sbjct:   527 SGVVQLRQKVQYMRRRGAKVMLEGWITREGIHCDCCSKILTVSRFEIHAGSKSCQPFQNI 586

Query:   680 YLDSGVSLLQCQIDAWNKLKESESIGFESVXXXXXXXXXXXXXXXXXXXXXXXXXXXPST 739
             YL+SG SLLQCQ+ AWN  K++ ++    V                           PST
Sbjct:   587 YLESGASLLQCQVRAWNMQKDATNLALHQVDTDGDDPNDDACGICGDGGDLICCDGCPST 646

Query:   740 FHQSCLDIQMLPPGDWHCPNCTCKFCGLXXXXXXXXXXXXXSALLPCAMCEKKYHKLCMQ 799
             +HQ+CL +Q+LP GDWHCPNCTCKFC                +LL C MCE++YH+LC+ 
Sbjct:   647 YHQNCLGMQVLPSGDWHCPNCTCKFCDAAVASGGKDGNFI--SLLSCGMCERRYHQLCLN 704

Query:   800 EMDALSDNLTGLVTSFCGRKCQELSEHLQKYLGVKHELEAGLSWSLIHRSDEDSDTSLRG 859
             + +A      G  +SFCG KC EL E LQKYLGVK E+E G SWSLIHR D DSDT+ + 
Sbjct:   705 D-EAHKVQSFGSASSFCGPKCLELFEKLQKYLGVKTEIEGGYSWSLIHRVDTDSDTNSQM 763

Query:   860 LPQRVECNSKLAVALNVMDECFLPIVDRRSGINLIHNVLYNSG 902
               QR+E NSKLAV L +MDECFLPIVDRRSG++LI NVLYN G
Sbjct:   764 SAQRIENNSKLAVGLAIMDECFLPIVDRRSGVDLIRNVLYNCG 806
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IC;ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2147391 AT5G36740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2832118 AT5G36670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086395 ROS4 "AT3G14980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178828 AT5G58610 "AT5G58610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163961 AT5G63900 "AT5G63900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040550 AT2G36720 "AT2G36720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019987001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (1391 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query902
pfam0062851 pfam00628, PHD, PHD-finger 1e-13
smart0024947 smart00249, PHD, PHD zinc finger 3e-11
cd11726127 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-tha 9e-07
COG5141 669 COG5141, COG5141, PHD zinc finger-containing prote 8e-06
cd11672120 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD 6e-04
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information 
 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 7/50 (14%)

Query: 721 CGICG---DGGDLICCDGCPSTFHQSCLDIQM----LPPGDWHCPNCTCK 763
           C +CG   D G+L+ CDGC   FH +CL   +    +P G+W+CP C  K
Sbjct: 2   CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPECKPK 51

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|213034 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-thalassemia/mental retardation, X-linked) Back     alignment and domain information
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|213032 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD-like zinc finger domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 902
KOG0956 900 consensus PHD finger protein AF10 [General functio 99.02
KOG1244336 consensus Predicted transcription factor Requiem/N 99.0
KOG1512381 consensus PHD Zn-finger protein [General function 98.9
COG5141 669 PHD zinc finger-containing protein [General functi 98.52
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 98.41
KOG4299 613 consensus PHD Zn-finger protein [General function 98.27
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 98.2
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 98.18
KOG1244336 consensus Predicted transcription factor Requiem/N 98.17
KOG1512381 consensus PHD Zn-finger protein [General function 98.17
KOG0954 893 consensus PHD finger protein [General function pre 98.07
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 97.99
KOG1973274 consensus Chromatin remodeling protein, contains P 97.99
KOG4299 613 consensus PHD Zn-finger protein [General function 97.97
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.97
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.95
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 97.94
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 97.93
KOG0825 1134 consensus PHD Zn-finger protein [General function 97.85
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.77
KOG0383 696 consensus Predicted helicase [General function pre 97.57
KOG0383 696 consensus Predicted helicase [General function pre 97.35
KOG0825 1134 consensus PHD Zn-finger protein [General function 97.2
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 96.57
KOG0957 707 consensus PHD finger protein [General function pre 96.49
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 96.35
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 95.99
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 95.95
KOG1245 1404 consensus Chromatin remodeling complex WSTF-ISWI, 95.09
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 95.02
KOG1973274 consensus Chromatin remodeling protein, contains P 94.99
KOG0957707 consensus PHD finger protein [General function pre 93.89
PF07227 446 DUF1423: Protein of unknown function (DUF1423); In 89.4
PF0142977 MBD: Methyl-CpG binding domain; InterPro: IPR00173 86.96
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 86.93
KOG1245 1404 consensus Chromatin remodeling complex WSTF-ISWI, 86.47
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 84.92
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 84.62
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 84.15
cd0139677 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are me 83.83
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 83.39
KOG1081 463 consensus Transcription factor NSD1 and related SE 81.86
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information 
Probab=99.02  E-value=1.5e-10  Score=133.65  Aligned_cols=113  Identities=27%  Similarity=0.691  Sum_probs=82.8

Q ss_pred             cCcccCCC-----CCeeeeCC--CCCCCCCcccCCCCCCCCCCCCCccc---------ccccCCCCCCCCCC--------
Q 002597          720 TCGICGDG-----GDLICCDG--CPSTFHQSCLDIQMLPPGDWHCPNCT---------CKFCGLAGEDDAEG--------  775 (902)
Q Consensus       720 ~C~VCgdG-----GeLLcCD~--CpraFH~~CLg~~~vPeg~W~Cp~C~---------C~~Cg~~~~d~~~e--------  775 (902)
                      -|.||.|.     ..||+||+  |.-+.|+.|+++.+||.|+|||..|.         |.+|...++.-+-.        
T Consensus         7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHV   86 (900)
T KOG0956|consen    7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHV   86 (900)
T ss_pred             ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEE
Confidence            58899874     35999996  99999999999999999999999996         76665433221100        


Q ss_pred             -------------------------------------------CCCCCcceeeCC--cchhhhhcccccccccccccc-C
Q 002597          776 -------------------------------------------DDTTTSALLPCA--MCEKKYHKLCMQEMDALSDNL-T  809 (902)
Q Consensus       776 -------------------------------------------d~~s~~~LL~Cd--qCer~YHv~CL~p~~~lp~~i-~  809 (902)
                                                                 -....+..+.|+  .|.++||+.|.+-.+.++++. .
T Consensus        87 VCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn  166 (900)
T KOG0956|consen   87 VCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGN  166 (900)
T ss_pred             EEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceecccc
Confidence                                                       001234567886  899999999998777677655 2


Q ss_pred             CCc-ceeeCCcchhhHHHHHhHhcc
Q 002597          810 GLV-TSFCGRKCQELSEHLQKYLGV  833 (902)
Q Consensus       810 ps~-~WFCs~~C~eI~e~LqkLVGv  833 (902)
                      ..+ .-|| ..|+.+|.+|.+-..+
T Consensus       167 ~~dNVKYC-GYCk~HfsKlkk~~~~  190 (900)
T KOG0956|consen  167 ISDNVKYC-GYCKYHFSKLKKSPAI  190 (900)
T ss_pred             ccccceec-hhHHHHHHHhhcCCCc
Confidence            233 3455 6999999999876554

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp [] Back     alignment and domain information
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD) Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query902
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 4e-26
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 1e-23
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 5e-23
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 5e-23
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 3e-22
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 5e-22
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 1e-20
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 2e-20
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 4e-18
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 4e-18
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 6e-11
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 2e-16
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 2e-15
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 5e-15
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 2e-14
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 3e-13
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 4e-13
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 4e-12
2k16_A75 Transcription initiation factor TFIID subunit 3; p 1e-11
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 2e-11
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 2e-11
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 3e-10
2pv0_B386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 2e-11
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 3e-11
1x4i_A70 Inhibitor of growth protein 3; structural genomics 6e-11
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 9e-11
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 4e-09
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 2e-10
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 9e-04
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 2e-10
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 2e-05
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 5e-10
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 7e-10
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 3e-04
1weu_A91 Inhibitor of growth family, member 4; structural g 7e-10
1we9_A64 PHD finger family protein; structural genomics, PH 1e-09
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 2e-09
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 2e-09
2yt5_A66 Metal-response element-binding transcription facto 2e-09
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 7e-09
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 4e-04
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 4e-08
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 9e-08
1wem_A76 Death associated transcription factor 1; structura 1e-07
3o70_A68 PHD finger protein 13; PHF13, structural genomics 1e-06
1wee_A72 PHD finger family protein; structural genomics, PH 4e-06
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 7e-06
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 1e-05
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 3e-05
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 5e-05
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 5e-05
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 1e-04
1wew_A78 DNA-binding family protein; structural genomics, P 2e-04
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 3e-04
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
 Score =  100 bits (252), Expect = 4e-26
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 712 DGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCTCKFC 765
            G D + + C +C DGG+L+CCD CPS++H  CL+  +  +P G+W CP CTC   
Sbjct: 3   LGSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159 Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 902
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 7e-19
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 1e-15
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 5e-13
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 1e-12
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 2e-11
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 2e-10
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 7e-10
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 3e-09
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 1e-07
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 9e-06
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 2e-05
d1vyxa_60 g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do 4e-05
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (195), Expect = 7e-19
 Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 2/53 (3%)

Query: 713 GDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQM--LPPGDWHCPNCTCK 763
           G D + + C +C DGG+L+CCD CPS++H  CL+  +  +P G+W CP CTC 
Sbjct: 4   GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query902
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.89
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 98.79
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.14
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.13
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.01
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 97.53
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.37
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.16
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 97.13
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.08
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 97.03
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 96.84
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 96.84
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 96.5
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 96.12
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 95.66
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 95.09
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 94.54
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 94.04
d1wema_76 Death associated transcription factor 1, Datf1 (DI 93.25
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 91.03
d1ig4a_75 Methylation-dependent transcriptional repressor MB 89.0
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 86.72
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 82.16
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 81.23
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=8.4e-10  Score=78.36  Aligned_cols=51  Identities=49%  Similarity=1.354  Sum_probs=45.0

Q ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf             999998867545899970640899997887546777--799998789865211
Q 002597          713 GDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQ--MLPPGDWHCPNCTCK  763 (902)
Q Consensus       713 ged~ndD~C~VCgdGGeLLcCD~CpraFH~~CL~p~--~vP~g~W~Cp~C~C~  763 (902)
                      +++.++++|.+|+++|+||+||.|+++||..|++++  .+|.+.|+|+.|.+.
T Consensus         4 ~~d~~~~~C~~C~~~g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~   56 (61)
T d1mm2a_           4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             CSCSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCCCCCCCCEECCCCCCC
T ss_conf             86688689867899795888699996076114588857589976899788384
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure