Citrus Sinensis ID: 002640

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------
Protein Sequence
MSGKGGGGGVGKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKESKDTTDSRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTDQQIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARYSLHMILFCYIIFFLPCNYVIFDLFGGRNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSMMAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHFGALGYPNFYHSQTGMSLEHQQQNPRDATLGGSQAQPSKQTQQLWQNSY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccEEEccccEcccHccccEEEEEcccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccHHHcccccccc
Coil and Loop (DISEMBL)
msgkgggggvgkgnngissipagSRKIVQSLKEIVNCPESEIYAMLKEcnmdpneavnrllsqdpfhevkskrdkrkeskdttdsrsrgasntsnrggrggtdrygvrsgaayftsnesgtlqskpaykkengthgyagssssaagvvannmnqrppfysddmptenktlevvsgdgissssqpssgfqsswlgvpgqvSMADIvkmgrphnkapphknvnnhhvlappaavshqelhssqghskvsefnsepevatsqhvspndewpsiehppamssvlegsaqsdlytkpahselytnpsnlsvdrtDQQIEAQLdeveeeedgpheipktnhvgsapvssrnmqednsggsslfennlynnmssyqphrhafehdeahdgtsvSAKLQQLnlqnddreapveedspsviipnhlqvhssdcshlsfgsfgtgidsafsgpfasrplknnleersetadapsighsdarYSLHMILFCYIIFFLPCNYvifdlfggrnpeyygdehlrstsdanianrpnvtagdydspavsqpsevlKQESVEALQEnqysfpssapgynyenaQQLNSAFAHQQAssqmqnlapfssmmaytnslpstlltsnvqparepdlqyspfpmtqsmptkysntassisgptismpealrgasistaqptqqtmpgasvatgpalpphlavhpysqptlplghfanmigypflpqsytympsgfqqafagnstYHQSLAAAvlpqyknsvsvsslpqsaavasgygfgnstsipggnfplntptapagttmgyddvlgsqykdnnhlislqqndnsamwvhgpgsrtmsavpastyysfqgqnqqpggfrqgqqpsqhfgalgypnfyhsqtgmslehqqqnprdatlggsqaqpskqtqQLWQNSY
Flexible Loop (DISEMBL)
msgkgggggvgkgnngissipagSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRllsqdpfhevkskrdkrkeskdttdsrsrgasntsnrggrggtdrygVRSGAAyftsnesgtlqsKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELytnpsnlsvdrTDQQIEAQLDEVEeeedgpheipktnhvgsapvssrNMQEDNSGGSSLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEErsetadapsighSDARYSLHMILFCYIIFFLPCNYVIFDLFGGRNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSMMAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHFGALGYPNFYHSQTGMSLEHQQQNPRDAtlggsqaqpskqtqqlwqnsy
Low Complexity Region (SEG)
MSgkgggggvgkgnngISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVkskrdkrkeskdttdsRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYagssssaagvvaNNMNQRPPFYSDDMPTENKTLEVVsgdgissssqpssgfqssWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTDQQIEAQLDeveeeeDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARYSLHMILFCYIIFFLPCNYVIFDLFGGRNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSMMAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYsfqgqnqqpggfrqgqqpsqHFGALGYPNFYHSQTGMSLEHQQQNPRDATLGGSQAQPSKQTQQLWQNSY
Disordered region (IsUnstruct)
**************************IVQSLKEIVNCPESEIYAMLKECN**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IPNHLQVHSSDCSHLSFGSFGTGI*********************************ARYSLHMILFCYIIFFLPCNYVIFDLFGGRNPEYYG*****************************************************************************************************************************************************************************LAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKN***************GYGF***********************MGYDDVLGSQYKDNNHLIS********MWV****************************************ALGYPNFY***************************************
Disordered Region (DISOPRED)
************************RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVN********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NHLQV**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**********GKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPF**********************************GTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVV****************SSWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPA************************************WPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTDQQIEAQLD**********EIPKTNHVGS**************GSSLFENNLYNNMSSYQPHRHAFEH*********SAKLQQLNLQ***********SPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNL***********IGHSDARYSLHMILFCYIIFFLPCNYVIFDLFGGRNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSA*********MQNLAPFSSMMAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASI***************ATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHFGALGYPNFYHSQTGM*********************************
Disordered Region (DISPRO)
********************PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKR*******************************************************************************************************************************************************************************************************************************************************************************************************************************************EEDSPSVIIPNHLQVHSSDCSHLSFGSFGT********************************************************************************************************************************NYEN*********************PFSSMMAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMP*************TISM***L*GASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHFGALGYPNFYHSQTGMS********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGKGGGGGVGKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKESKDTTDSRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSxxxxxxxxxxxxxxxxxxxxxPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARYSLHMILFCYIIFFLPCNYVIFDLFGGRNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSMMAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHFGALGYPNFYHSQTGMSLEHQQQNPRDATLGGSQAQPSKQTQQLWQNSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	897
224116450	911	predicted protein [Populus trichocarpa]	0.938	0.924	0.652	0.0
255557423	849	conserved hypothetical protein [Ricinus	0.938	0.991	0.679	0.0
359483606	866	PREDICTED: uncharacterized protein LOC10	0.927	0.960	0.660	0.0
297740637	799	unnamed protein product [Vitis vinifera]	0.862	0.968	0.624	0.0
356528381	837	PREDICTED: uncharacterized protein LOC10	0.917	0.983	0.593	0.0
356511015	846	PREDICTED: uncharacterized protein LOC10	0.910	0.965	0.606	0.0
449433553	845	PREDICTED: uncharacterized protein LOC10	0.913	0.969	0.564	0.0
449505951	844	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.911	0.969	0.558	0.0
357519233	865	hypothetical protein MTR_8g088190 [Medic	0.926	0.960	0.553	0.0
356532397	838	PREDICTED: uncharacterized protein LOC10	0.910	0.974	0.559	0.0

>gi|224116450|ref|XP_002317304.1| predicted protein [Populus trichocarpa] gi|222860369|gb|EEE97916.1| predicted protein [Populus trichocarpa]

 Score = 1144 bits (2958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/925 (65%), Positives = 697/925 (75%), Gaps = 83/925 (8%)

Query: 17  ISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKR 76
           IS IPA SRK+VQSLKEIVNCPE EIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKR+K+
Sbjct: 26  ISGIPAASRKMVQSLKEIVNCPEPEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKREKK 85

Query: 77  KESKDTTDSRSRGASNTSNRGGRGGTDRYGVRSG---AAYFTSN---------------- 117
           KE+KD+TD RSRGASN SNRGGRGG DRYG R G   +AYF SN                
Sbjct: 86  KENKDSTDFRSRGASNISNRGGRGGADRYG-RGGPGRSAYFNSNVNHLFSVQLMWTITNN 144

Query: 118 ---ESGTLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVS 174
              ES T  SKPAYKKENGT+ Y     SA+G+  NN+N +PP +SD +  ENK   + +
Sbjct: 145 FSPESSTFHSKPAYKKENGTNAYIDPFPSASGIAGNNINWQPPSHSDSVAAENKMSTIGA 204

Query: 175 GDGISSSSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKAP---PHKNVNNHHVLAPPAA 231
           GDG+SSS QPS  +QS+W+GVPGQVSMADIVKMGRP NKA    PH++VN+H   A   A
Sbjct: 205 GDGVSSSPQPSPVYQSAWMGVPGQVSMADIVKMGRPQNKASVILPHQSVNHHRAAASLLA 264

Query: 232 VSHQELHSSQGH-SKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYT 290
            SH + HSS+ + SKV E  +EPE+ATSQH   NDEWPSIE P A       +  S +  
Sbjct: 265 ASHNDFHSSENYASKVVEITAEPEMATSQHNHSNDEWPSIEQPTA-------AITSSVRD 317

Query: 291 KPAHSELYTNPSNLSVDRTDQQIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDN 350
            PA SELY + SNL +DR  Q +++QLD+ +  ED   E    NHVG A VS+RN QED 
Sbjct: 318 VPADSELYGDLSNLPLDRGSQHVKSQLDD-QTAEDAHVESFDGNHVGPASVSTRNTQEDG 376

Query: 351 SGGSSLFENNLYNNMSSYQPHRHAFEHDE----------------AHDGT-SVSAKLQQL 393
           SGGSSLF+N++Y N++SYQ    AFE++E                A DGT SV+A LQ L
Sbjct: 377 SGGSSLFDNDVYENINSYQSDSLAFENNEGAIDNLSELIVSHVISAEDGTSSVAANLQHL 436

Query: 394 NLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNL 453
           +LQNDD+    EE++PSVIIPNHLQVH+ +CSHLSFGSFG+G++SAFSG FAS P+  +L
Sbjct: 437 SLQNDDQGVQPEENNPSVIIPNHLQVHAQECSHLSFGSFGSGMNSAFSGQFASMPINKSL 496

Query: 454 EERSETADAPSIGHSDARYSLHMILFCYIIFFLPCNYVIFDLFGGRNPEYYGDEHLRSTS 513
           EE SE  DA S GHS+A                            RNPEYYGDEHLR+  
Sbjct: 497 EETSEVVDALSTGHSEA----------------------------RNPEYYGDEHLRNAV 528

Query: 514 DANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSA 573
           D ++ +R  V+A +YDS +V Q SE LK+E+ EA Q NQY+FPSS PGY+YEN QQLN A
Sbjct: 529 DESLVHRAGVSATNYDSSSVPQ-SETLKEETSEATQGNQYAFPSSTPGYSYENTQQLNVA 587

Query: 574 FAHQQASSQMQNLAPFSSMMAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSN 633
           F + Q S+QMQN+APFSS+MAYTNS+PS LL S VQ  RE DL YSPFP+TQS+PTKYSN
Sbjct: 588 FNNPQTSTQMQNIAPFSSVMAYTNSMPSALLASTVQAGRETDLPYSPFPVTQSLPTKYSN 647

Query: 634 TASSISGPTISMPEALRGASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGH 693
            A+SISGP+ISM EALR   +ST QPT QT+PGA++ATGPALP HLAVHPY QPTLPLGH
Sbjct: 648 AATSISGPSISMSEALRAGGVSTPQPTPQTLPGANIATGPALPQHLAVHPYQQPTLPLGH 707

Query: 694 FANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVAS 753
           FANMI YPF+ QSYTYMPS FQQ FAGN++YHQSL AAVLPQYKNSVSVSSLPQSAAVAS
Sbjct: 708 FANMISYPFMAQSYTYMPSAFQQTFAGNNSYHQSL-AAVLPQYKNSVSVSSLPQSAAVAS 766

Query: 754 GYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGP 813
           GYGFG+STSIP GNFPLN PTAPAGTT+GYDD+LGSQYKD +HL+SLQQN+NSAMW+HGP
Sbjct: 767 GYGFGSSTSIPAGNFPLNAPTAPAGTTIGYDDILGSQYKDASHLMSLQQNENSAMWLHGP 826

Query: 814 GSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHFGALGYPNFYHSQTGMSLEH-QQQN 872
           GSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHFGALGYPN+YHSQTGMSLEH QQQN
Sbjct: 827 GSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHFGALGYPNYYHSQTGMSLEHQQQQN 886

Query: 873 PRDATLGGSQAQPSKQTQQLWQNSY 897
            RD +LGGSQ QPSKQ QQLWQNSY
Sbjct: 887 SRDGSLGGSQGQPSKQAQQLWQNSY 911

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557423|ref|XP_002519742.1| conserved hypothetical protein [Ricinus communis] gi|223541159|gb|EEF42715.1| conserved hypothetical protein [Ricinus communis]

 Score = 1142 bits (2954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/904 (67%), Positives = 702/904 (77%), Gaps = 62/904 (6%)

Query: 1   MSGKGGGGGVGKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRL 60
           MSGK      GKGN+GIS IPAGSRK+VQSLKEIVNCPE EIYAMLK+CNMDPNEAVNRL
Sbjct: 1   MSGKAAINN-GKGNSGISGIPAGSRKMVQSLKEIVNCPEPEIYAMLKDCNMDPNEAVNRL 59

Query: 61  LSQDPFHEVKSKRDKRKESKDTTDSRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESG 120
           LSQDPFHEVKSKR+K+KE+KDTT+ RSR A+N ++R GR G DRYG R G++ F+SN+ G
Sbjct: 60  LSQDPFHEVKSKREKKKETKDTTEPRSRVANNATHRAGRVGADRYG-RGGSSQFSSNDPG 118

Query: 121 TLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISS 180
               KPAYKKENGT+  AGSSS+ + +   N+N+RP   SD +  ENK L V + DG+S 
Sbjct: 119 VSHGKPAYKKENGTNASAGSSSAPS-MAGTNINRRPILNSDLVAAENKLLTVGASDGVSL 177

Query: 181 SSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKA-PPHKNVNNHHVLAPPAAVSHQELHS 239
           SSQP++GFQS W+GVPGQVSMADIVKMGRPHNKA PPH +VN+ H  APP    + +LH 
Sbjct: 178 SSQPTAGFQSPWVGVPGQVSMADIVKMGRPHNKAMPPHHSVNHRHPAAPPLTALNHDLHL 237

Query: 240 SQGHS-KVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSS--VLEGSAQSDLYTKPAHSE 296
           S+ +S KVSE N+EPEV  SQ V  NDEWPSIE P A+S   VLE          P+ SE
Sbjct: 238 SENYSAKVSEVNAEPEVTASQLVHANDEWPSIE-PSAVSMPPVLEA---------PSDSE 287

Query: 297 LYTNPSNLSVDRTDQQIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSL 356
           L T+PSNL +DR +Q ++++LD+ +  ED   E    NHVG   VSSR ++ED++ GSS+
Sbjct: 288 LCTDPSNLPLDRVNQHMQSELDDTQSTEDDHIETFNVNHVGPTSVSSRTIKEDDAVGSSM 347

Query: 357 FENNLYNNMSSYQPHRHAFEHDEAHDG-TSVSAKLQQLNLQNDDREAPVEEDSPSVIIPN 415
           FE+NLY NM SYQ HRHAFEH EA DG +SV+A LQ L+LQ +D+ A  +ED+PSVIIPN
Sbjct: 348 FESNLYGNMGSYQTHRHAFEH-EAEDGASSVAANLQHLSLQGEDQAASSDEDNPSVIIPN 406

Query: 416 HLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARYSLH 475
           HLQVH+ DCSHLSFGSFG+GI SAF G FASRPLKNNLEE SE  DA S  HSDAR    
Sbjct: 407 HLQVHAQDCSHLSFGSFGSGIGSAFPGAFASRPLKNNLEETSEVVDASSAVHSDAR---- 462

Query: 476 MILFCYIIFFLPCNYVIFDLFGGRNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQ 535
                                   N EYYGDEHLR+ +D N+ +R  V+ G+YDSPA  Q
Sbjct: 463 ------------------------NTEYYGDEHLRNAADDNLIHRAGVSPGNYDSPAGPQ 498

Query: 536 PSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSMM-A 594
           P EVLK+E+ EA Q NQY+FPSSA GY +EN+QQLN+AF++ Q SSQMQN+ PFS++M A
Sbjct: 499 P-EVLKEETPEAAQGNQYAFPSSASGYTFENSQQLNAAFSNPQTSSQMQNMTPFSNVMQA 557

Query: 595 YTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASI 654
           YTNSLPSTLLTS VQ  REPDL YSPFP+TQSMPTKYSNTASSISGP+ISMPEALR  SI
Sbjct: 558 YTNSLPSTLLTSTVQQGREPDLPYSPFPVTQSMPTKYSNTASSISGPSISMPEALRAPSI 617

Query: 655 STAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGF 714
           ST QPT QT+PG SVATGPAL  HLAVHPYSQPTLPLG FANMIGYPFLPQSYTYMPS F
Sbjct: 618 STPQPTPQTLPGGSVATGPALQQHLAVHPYSQPTLPLGPFANMIGYPFLPQSYTYMPSAF 677

Query: 715 QQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPT 774
           QQ FAGNSTYHQSL AAVLPQYKNSVSV+SLPQSAAVAS YGFG+STS+P G        
Sbjct: 678 QQTFAGNSTYHQSL-AAVLPQYKNSVSVTSLPQSAAVASAYGFGSSTSVPAG-------- 728

Query: 775 APAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQ 834
              GTT+GYDD L SQYKD NHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQ
Sbjct: 729 ---GTTIGYDDGLSSQYKDGNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQ 785

Query: 835 QPGGFRQGQQPS-QHFGALGYPNFYHSQTGMSLEHQQQNPRDATLGGSQAQPSKQTQQLW 893
           QP G+RQGQQ S QHFGALGYPN+YHSQTG+SLE QQQN R+ +LGGSQ QPSKQTQQLW
Sbjct: 786 QPAGYRQGQQLSQQHFGALGYPNYYHSQTGISLELQQQNSREGSLGGSQGQPSKQTQQLW 845

Query: 894 QNSY 897
           QNSY
Sbjct: 846 QNSY 849

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483606|ref|XP_002271969.2| PREDICTED: uncharacterized protein LOC100245196 [Vitis vinifera]

 Score = 1110 bits (2871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/901 (66%), Positives = 681/901 (75%), Gaps = 69/901 (7%)

Query: 11  GKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVK 70
           GKG+ GIS+IPA SRK+VQSL+E+VNC E EIYAMLKECNMDPN+AV+RLLS DPFHEVK
Sbjct: 21  GKGSGGISTIPAASRKMVQSLREVVNCSEQEIYAMLKECNMDPNDAVHRLLSLDPFHEVK 80

Query: 71  SKRDKRKESKDTTDSRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKK 130
           SK+DKRKESKDTT+SRSR  ++TS RG RGGTDR+  RS +  F+S          AYKK
Sbjct: 81  SKKDKRKESKDTTESRSRSVNSTSTRGSRGGTDRFAGRSSSNQFSST---------AYKK 131

Query: 131 ENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQS 190
           ENGT+ Y  ++  A GV  N+MN RPP  S+ + TE K L + + DGI+SSSQPSSGFQS
Sbjct: 132 ENGTNAY--TTYPAVGVAGNSMNWRPPTTSETVATE-KILTIGTSDGITSSSQPSSGFQS 188

Query: 191 SWLGVPGQVSMADIVKMGRPHNKAPP-----HKNVNNHHVLAPPAAVSHQELHSSQGHSK 245
           +WLGVPG VSMADIVK GRPH KA       + NV NH VLAP +   H +LHS    SK
Sbjct: 189 AWLGVPGHVSMADIVKKGRPHGKASATPNTSYPNVTNHQVLAPSSTALHHDLHSYDHVSK 248

Query: 246 VSEFNSEPEVATSQHVSPNDEWPSIEHPPA--MSSVLEGSAQSDLYTKPAHSELYTNPSN 303
           VS+ N EP +A  Q+V PNDEWP +E  P+  +SS+LE SA S         + +T+ SN
Sbjct: 249 VSDMNPEPGIAAKQNVPPNDEWPLVEQLPSASVSSLLEPSADS---------QPFTDQSN 299

Query: 304 LSVDRTDQQIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYN 363
           L +D ++Q I  QLDE ++E+D   E    +HV SA VSSR +QEDNSGG+SLF+N+LY 
Sbjct: 300 LPLD-SNQHINPQLDEAQDEDDSSDENLNEDHVISASVSSRKIQEDNSGGASLFDNDLYE 358

Query: 364 NMSSYQPHRHAFEHDEAHDG----TSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQV 419
           NM SYQPHRHAFEH EA D     +SV+  +Q+L LQ D R  P EED  SVIIPNHLQV
Sbjct: 359 NMGSYQPHRHAFEHHEAEDVGVPVSSVATNMQELTLQEDPRPKP-EEDDHSVIIPNHLQV 417

Query: 420 HSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARYSLHMILF 479
             +D SHLSFGSF +GI S+FSGPFASR +KN+LE+ S  AD P +GHS+ R        
Sbjct: 418 QHADFSHLSFGSFRSGISSSFSGPFASRSVKNSLEDASTVADTP-VGHSETR-------- 468

Query: 480 CYIIFFLPCNYVIFDLFGGRNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEV 539
                               NP+YY DEHLR+TSD N+A+R    AG YDSP+ SQP E 
Sbjct: 469 --------------------NPDYYEDEHLRTTSDGNMAHRTAAIAGSYDSPSASQP-EA 507

Query: 540 LKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSMMAYTNSL 599
           LKQE+ EA Q NQY+FPSSA GY +E +QQLN AF H Q SSQMQNLAPFSS+MAYTNSL
Sbjct: 508 LKQEASEAAQGNQYNFPSSASGYTFETSQQLNPAFPHSQTSSQMQNLAPFSSVMAYTNSL 567

Query: 600 PSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQP 659
           PS LL S V PARE DL YSPFP+TQSM TKYSN  SSISG TIS+ EAL+  S ST QP
Sbjct: 568 PSNLLASTVPPARESDLPYSPFPITQSMSTKYSNAVSSISGSTISVTEALKTGSFSTPQP 627

Query: 660 TQQTMPGASVATGPALPPHL-AVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAF 718
           T QT+P  SVATGPALP HL  VHPYSQP LPLGHFANMIGYPFLPQSYTYMPS +QQAF
Sbjct: 628 TPQTLPSTSVATGPALPQHLPPVHPYSQPGLPLGHFANMIGYPFLPQSYTYMPSAYQQAF 687

Query: 719 AGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYG-FGNSTSIPGGNFPLNTPTAPA 777
           AGNSTYHQSL AAVLPQYKNSVSVSSLPQSAA+ASGYG FG+STSIP GNF LN PTA A
Sbjct: 688 AGNSTYHQSL-AAVLPQYKNSVSVSSLPQSAAIASGYGAFGSSTSIP-GNFSLNPPTAAA 745

Query: 778 GTTMGYDDVLGSQYKDNNHLISL-QQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQP 836
           GTT+GYDDV+ SQYKD NHLISL QQN+NSAMWVHGPGSRTMSAVPA+TYYSFQGQNQQP
Sbjct: 746 GTTIGYDDVINSQYKDGNHLISLQQQNENSAMWVHGPGSRTMSAVPANTYYSFQGQNQQP 805

Query: 837 GGFRQGQQPSQHFGALGYPNFYHSQTGMSLEHQQQNPRDATLGGSQAQPSKQTQQLWQNS 896
           GGFRQGQQPSQHFGALGYPNFYHSQ G+SLEHQQQNPRD +L GSQ Q SKQ+QQ+WQN+
Sbjct: 806 GGFRQGQQPSQHFGALGYPNFYHSQAGISLEHQQQNPRDGSLSGSQGQASKQSQQIWQNN 865

Query: 897 Y 897
           Y
Sbjct: 866 Y 866

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740637|emb|CBI30819.3| unnamed protein product [Vitis vinifera]

 Score = 1023 bits (2644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/897 (62%), Positives = 639/897 (71%), Gaps = 123/897 (13%)

Query: 11  GKGNNGISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVK 70
           GKG+ GIS+IPA SRK+VQSL+E+VNC E EIYAMLKECNMDPN+AV+RLLS DPFHEVK
Sbjct: 16  GKGSGGISTIPAASRKMVQSLREVVNCSEQEIYAMLKECNMDPNDAVHRLLSLDPFHEVK 75

Query: 71  SKRDKRKESKDTTDSRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKK 130
           SK+DKRKESKDTT+SRSR  ++TS RG RGGTDR+  RS +  F+S +SGT   K AYKK
Sbjct: 76  SKKDKRKESKDTTESRSRSVNSTSTRGSRGGTDRFAGRSSSNQFSSTDSGTSHGKSAYKK 135

Query: 131 ENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQS 190
           ENGT+ Y  ++  A GV  N+MN RPP  S+ + TE K L + + DGI+SSSQPSSGFQS
Sbjct: 136 ENGTNAY--TTYPAVGVAGNSMNWRPPTTSETVATE-KILTIGTSDGITSSSQPSSGFQS 192

Query: 191 SWLGVPGQVSMADIVKMGRPHNKAPPHKNVNNHHVLAPPAAVSHQELHSSQGHSKVSEFN 250
           +WLGVPG VSMADIVK GRPH KA    N +  +V                        N
Sbjct: 193 AWLGVPGHVSMADIVKKGRPHGKASATPNTSYPNVT-----------------------N 229

Query: 251 SEPEVATSQHVSPNDEWPSIEHPPA--MSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDR 308
            +P +A  Q+V PNDEWP +E  P+  +SS+LE SA S         + +T+ SNL +D 
Sbjct: 230 HQPGIAAKQNVPPNDEWPLVEQLPSASVSSLLEPSADS---------QPFTDQSNLPLD- 279

Query: 309 TDQQIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYNNMSSY 368
                                                        +SLF+N+LY NM SY
Sbjct: 280 --------------------------------------------SASLFDNDLYENMGSY 295

Query: 369 QPHRHAFEHDEAHDG----TSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDC 424
           QPHRHAFEH EA D     +SV+  +Q+L LQ D R  P EED  SVIIPNHLQV  +D 
Sbjct: 296 QPHRHAFEHHEAEDVGVPVSSVATNMQELTLQEDPRPKP-EEDDHSVIIPNHLQVQHADF 354

Query: 425 SHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARYSLHMILFCYIIF 484
           SHLSFGSF +GI S+FSGPFASR +KN+LE+ S  AD P +GHS+ R             
Sbjct: 355 SHLSFGSFRSGISSSFSGPFASRSVKNSLEDASTVADTP-VGHSETR------------- 400

Query: 485 FLPCNYVIFDLFGGRNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQES 544
                          NP+YY DEHLR+TSD N+A+R    AG YDSP+ SQP E LKQE+
Sbjct: 401 ---------------NPDYYEDEHLRTTSDGNMAHRTAAIAGSYDSPSASQP-EALKQEA 444

Query: 545 VEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSMM-AYTNSLPSTL 603
            EA Q NQY+FPSSA GY +E +QQLN AF H Q SSQMQNLAPFSS+M AYTNSLPS L
Sbjct: 445 SEAAQGNQYNFPSSASGYTFETSQQLNPAFPHSQTSSQMQNLAPFSSVMQAYTNSLPSNL 504

Query: 604 LTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQT 663
           L S V PARE DL YSPFP+TQSM TKYSN  SSISG TIS+ EAL+  S ST QPT QT
Sbjct: 505 LASTVPPARESDLPYSPFPITQSMSTKYSNAVSSISGSTISVTEALKTGSFSTPQPTPQT 564

Query: 664 MPGASVATGPALPPHLA-VHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNS 722
           +P  SVATGPALP HL  VHPYSQP LPLGHFANMIGYPFLPQSYTYMPS +QQAFAGNS
Sbjct: 565 LPSTSVATGPALPQHLPPVHPYSQPGLPLGHFANMIGYPFLPQSYTYMPSAYQQAFAGNS 624

Query: 723 TYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYG-FGNSTSIPGGNFPLNTPTAPAGTTM 781
           TYHQSLAA VLPQYKNSVSVSSLPQSAA+ASGYG FG+STSIPG NF LN PTA AGTT+
Sbjct: 625 TYHQSLAA-VLPQYKNSVSVSSLPQSAAIASGYGAFGSSTSIPG-NFSLNPPTAAAGTTI 682

Query: 782 GYDDVLGSQYKDNNHLISLQQ-NDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFR 840
           GYDDV+ SQYKD NHLISLQQ N+NSAMWVHGPGSRTMSAVPA+TYYSFQGQNQQPGGFR
Sbjct: 683 GYDDVINSQYKDGNHLISLQQQNENSAMWVHGPGSRTMSAVPANTYYSFQGQNQQPGGFR 742

Query: 841 QGQQPSQHFGALGYPNFYHSQTGMSLEHQQQNPRDATLGGSQAQPSKQTQQLWQNSY 897
           QGQQPSQHFGALGYPNFYHSQ G+SLEHQQQNPRD +L GSQ Q SKQ+QQ+WQN+Y
Sbjct: 743 QGQQPSQHFGALGYPNFYHSQAGISLEHQQQNPRDGSLSGSQGQASKQSQQIWQNNY 799

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528381|ref|XP_003532782.1| PREDICTED: uncharacterized protein LOC100803908 [Glycine max]

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/911 (59%), Positives = 652/911 (71%), Gaps = 88/911 (9%)

Query: 1   MSGKGGGGGVGKGNNGISSIPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNR 59
           MSGKGGG       +  + IP  SRK+VQSL+EIV N PE EIYA LK+CNMDPNEAV+R
Sbjct: 1   MSGKGGG-------SQKAGIPPASRKMVQSLREIVSNIPEHEIYATLKDCNMDPNEAVSR 53

Query: 60  LLSQDPFHEVKSKRDKRKESKDTTDSRSRGASNTSNRGG---RGGTDRYGVRSGAAYFTS 116
           LLSQDPFHEVKSKR+K+KE KDTTD+RSRG SN S+RGG   R G+DRY  R        
Sbjct: 54  LLSQDPFHEVKSKREKKKEGKDTTDTRSRGISNASSRGGGGARVGSDRYVGRG------- 106

Query: 117 NESGTLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGD 176
            +SG LQ KP +KKENGT  Y G ++ A+  + NN+N++ P YSD          V   D
Sbjct: 107 -DSGLLQGKPVFKKENGTPAYGGYTAPASSSLDNNVNRQLPSYSD---------SVRVCD 156

Query: 177 GISSSSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKAP-PHKNVN---NHHVLAPPAAV 232
           G+SSS     G QS W   PGQVSMADIV+MGRP  KA  P+ +++   + +  A P+A 
Sbjct: 157 GLSSSQH--GGLQSPWAANPGQVSMADIVRMGRPQAKASMPNSSLHSGSHQNDFALPSA- 213

Query: 233 SHQELHSSQGH-SKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTK 291
           S   LHS Q H SK+SE N++   A   +V   DEWPSIEH PA+S  L       +   
Sbjct: 214 SQNNLHSVQVHASKLSETNNDHGFAIDSNVEQTDEWPSIEHQPAVSVSL-------VVDG 266

Query: 292 PAHSELYTNPSNLSVDRTDQQIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDNS 351
              SE +TN SN      +QQ++  ++E   E+D P E P    VGSA    +++ E+N 
Sbjct: 267 HPTSEYHTNSSN--SGEANQQLKTHVNEFVAEDD-PVENPDI--VGSA----KSISEENP 317

Query: 352 GGSSLFENNLYNNMSSYQPHRHAFEHDEAHDG-TSVSAKLQQLNLQNDDREAPVEEDSPS 410
             +S+F+ +LY +++SYQPHRH FE++EA DG +SV+  L+QLNL ++D+    EE++ S
Sbjct: 318 ESTSVFDGSLYKDINSYQPHRHPFENNEAEDGVSSVATNLEQLNLHSNDQGTEPEEENSS 377

Query: 411 VIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSG--PFASRPLKNNLEERSETADAPSIGHS 468
           V+IPNHLQ+HS++C +LSFGSFG+  D++ SG  P+ASRPLK+NLE+ S   D  +IG S
Sbjct: 378 VVIPNHLQLHSAECLNLSFGSFGSANDASLSGSGPYASRPLKSNLEDTSGANDVSTIGSS 437

Query: 469 DARYSLHMILFCYIIFFLPCNYVIFDLFGGRNPEYYGDEHLRSTSDANIANRPNVTAGDY 528
           D R                            NP+YY DEHL +TSD N+A+   V AG Y
Sbjct: 438 DVR----------------------------NPDYYADEHLTTTSDGNLAHITGVDAGTY 469

Query: 529 DSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAP 588
           +  ++SQ SE LK E  E  QENQYSFPSS+  + YENAQQ +  + H Q SSQ+QNL+P
Sbjct: 470 EHSSISQ-SEALKSEPPETAQENQYSFPSSSHEFTYENAQQPDVTYPHSQTSSQIQNLSP 528

Query: 589 FSSMM-AYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPE 647
           FSS+M AYTNSLPS LL S VQ ARE D+ YSPFP TQSMP+KYSN ASSI GP+I+M E
Sbjct: 529 FSSVMQAYTNSLPSALLASTVQTARE-DIPYSPFPATQSMPSKYSNIASSIGGPSITMSE 587

Query: 648 ALRGASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSY 707
           ALR  +IST QP  Q +PGA+VATGPALP HLAVHPYSQPTLPLGHFANMIGY FLPQSY
Sbjct: 588 ALRANNISTPQPNPQALPGANVATGPALPQHLAVHPYSQPTLPLGHFANMIGYQFLPQSY 647

Query: 708 TYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGN 767
           TYMPS FQQAF GNSTYHQSL AA+LPQYKNS+SVSSLPQSAAVASGYGFG+STSIPGGN
Sbjct: 648 TYMPSAFQQAFPGNSTYHQSL-AAMLPQYKNSISVSSLPQSAAVASGYGFGSSTSIPGGN 706

Query: 768 FPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYY 827
           +PLN P AP  TT+GYDDV+ SQYKDNNH+ISLQQN+NS MWVHGP SRTMSAVPA+TYY
Sbjct: 707 YPLNPPAAPTSTTIGYDDVINSQYKDNNHMISLQQNENSPMWVHGPSSRTMSAVPANTYY 766

Query: 828 SFQGQNQQPGGFRQGQQPS-QHFGALGYPNFYHSQTGMSLEHQQQNPRDATLGGSQAQPS 886
           SFQGQNQQPGGFRQ QQPS QHFG+LGYPNFYHSQTG+SLEHQQQNPR+A+L GSQ QP 
Sbjct: 767 SFQGQNQQPGGFRQNQQPSQQHFGSLGYPNFYHSQTGISLEHQQQNPREASLAGSQTQPP 826

Query: 887 KQTQQLWQNSY 897
           KQ+ Q+WQNSY
Sbjct: 827 KQSPQIWQNSY 837

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511015|ref|XP_003524227.1| PREDICTED: uncharacterized protein LOC100776017 [Glycine max]

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/895 (60%), Positives = 645/895 (72%), Gaps = 78/895 (8%)

Query: 20  IPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKE 78
           IP  SRK+VQSLKEIV N PE EIYA LK+CNMDPNEAV+RLLSQD FHEVKSKR+K+KE
Sbjct: 13  IPPASRKMVQSLKEIVSNIPEHEIYATLKDCNMDPNEAVSRLLSQDTFHEVKSKREKKKE 72

Query: 79  SKDTTDSRSRGASNTSNRGG--RGGTDRYGVRSGAAYFTSN-ESGTLQSKPAYKKENGTH 135
            KDTTDSRSR  SNTS+RGG  R   DRY  R GA  F+S  +SG LQ KP  KKENGT 
Sbjct: 73  GKDTTDSRSRVVSNTSSRGGGARVSADRYVGRGGATQFSSGGDSGLLQGKPVLKKENGTP 132

Query: 136 GYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQSSWLGV 195
            Y G ++ A+  + NN+N++ P YSD          V   DG+SSS     G QS W+  
Sbjct: 133 AYGGLTAPASSALDNNVNRQLPSYSDS---------VRVCDGLSSSQY--GGMQSPWVAN 181

Query: 196 PGQVSMADIVKMGRPHNKAPPHKNV----NNHHVLAPPAAVSHQELHSSQGH-SKVSEFN 250
           PGQVSMADIV+MGRP  KA  H +     ++ +V APP A SH  LHS QGH SKVSE N
Sbjct: 182 PGQVSMADIVRMGRPQAKASMHNSSLHSGSHQNVFAPPEA-SHNNLHSLQGHASKVSETN 240

Query: 251 SEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTD 310
           ++   A + +V  NDEWP IEH PA+S        S +      SE +TN SN      +
Sbjct: 241 NDRGFAINSNVEQNDEWPLIEHQPAVSV-------SSVVDDHPTSEYHTNSSN--SGEAN 291

Query: 311 QQIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYNNMSSYQP 370
           QQ++  ++E   E+D P E P  ++VGSA +S     E+N   +S+F+ + Y +++SYQ 
Sbjct: 292 QQLKTHVNEFVAEDD-PVENP--DNVGSASIS-----EENPESTSVFDGSTYKDINSYQS 343

Query: 371 HRHAFEHDEAHDG-TSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSF 429
           HRH FE +EA  G +SV+A L+QLNL ++D+    EE++ SV+IPNHLQ+HS++C +LSF
Sbjct: 344 HRHPFETNEAEGGVSSVAANLEQLNLHSNDQGTEQEEENSSVVIPNHLQLHSAECLNLSF 403

Query: 430 GSFGTGIDSAFSG--PFASRPLKNNLEERSETADAPSIGHSDARYSLHMILFCYIIFFLP 487
           GSFG+  D++ SG  P+ASRPLK+NLE+ S   D  +IG SD R                
Sbjct: 404 GSFGSANDASLSGSGPYASRPLKSNLEDTSGANDVSTIGSSDVR---------------- 447

Query: 488 CNYVIFDLFGGRNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEA 547
                       NP+YYGDEHL +TSD N+A+   V AG Y+  ++SQ SE LK E  E 
Sbjct: 448 ------------NPDYYGDEHLTTTSDGNVAHITGVDAGTYEHSSISQ-SEALKSEPPET 494

Query: 548 LQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSMM-AYTNSLPSTLLTS 606
            QENQYSFPSS   + YENAQQ +  + H Q SSQ+QNL+PFSS+M AYTNSLPS LL S
Sbjct: 495 AQENQYSFPSSHE-FTYENAQQPDVTYPHSQTSSQIQNLSPFSSVMQAYTNSLPSALLAS 553

Query: 607 NVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPG 666
            VQ ARE D+ YSPFP TQSMP KYSN ASSI GPTI+M EALR  +IST QP  Q +PG
Sbjct: 554 TVQTARE-DIPYSPFPATQSMPAKYSNIASSIGGPTINMSEALRANNISTPQPNPQALPG 612

Query: 667 ASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQ 726
           A+VATGPALP HLAVHPYSQPTLPLGHFANMI YPFLPQSYTYMPS FQQAF GNSTYHQ
Sbjct: 613 ANVATGPALPQHLAVHPYSQPTLPLGHFANMISYPFLPQSYTYMPSAFQQAFPGNSTYHQ 672

Query: 727 SLAAAVLPQYKNSVSVSSLPQS---AAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGY 783
           SL AA+LPQYKNS+SVSSLPQS   AAVASGYGFG+STSIPGGN+PLN P AP  TT+GY
Sbjct: 673 SL-AAMLPQYKNSISVSSLPQSAAAAAVASGYGFGSSTSIPGGNYPLNPPAAPTSTTIGY 731

Query: 784 DDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFRQGQ 843
           DDV+ SQ+K+NNH+ISLQQN+NS MWVHGP SRTMSAVP STYYSFQGQNQQPGGFRQ Q
Sbjct: 732 DDVINSQFKENNHIISLQQNENSPMWVHGPSSRTMSAVPPSTYYSFQGQNQQPGGFRQSQ 791

Query: 844 QPS-QHFGALGYPNFYHSQTGMSLEHQQQNPRDATLGGSQAQPSKQTQQLWQNSY 897
           QPS QHFG+LGYPNFYHSQTG+SLEHQQQNPR+A+L GSQ+QP KQ+QQ+WQNSY
Sbjct: 792 QPSQQHFGSLGYPNFYHSQTGISLEHQQQNPREASLAGSQSQPPKQSQQIWQNSY 846

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433553|ref|XP_004134562.1| PREDICTED: uncharacterized protein LOC101211388 [Cucumis sativus]

 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/888 (56%), Positives = 630/888 (70%), Gaps = 69/888 (7%)

Query: 20  IPAGSRKIVQSLKEIVN-CPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKE 78
           IP   RK+VQSLKEIVN C + EIYA L+ECNMDP+EAVNRLL+QDPFHEVKSKR+K+KE
Sbjct: 17  IPPEWRKMVQSLKEIVNNCTDQEIYATLRECNMDPDEAVNRLLTQDPFHEVKSKREKKKE 76

Query: 79  SKDTTDSRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYA 138
           +KD  DSRSRG+S  S+R  +GGTDRY  RS +  F S+++G   SKP YKKENG   +A
Sbjct: 77  NKDPIDSRSRGSSIPSSRTSKGGTDRYAGRSSSIQFGSSDTGLSSSKPVYKKENGASDHA 136

Query: 139 GSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQSSWLGVPGQ 198
           GSSS++     ++  Q P  +S+++ TENK   + +GDG  SSSQ S GFQS+WLG  GQ
Sbjct: 137 GSSSASGQSGNHSFYQFPS-HSNNVATENKLSGLGAGDGAISSSQTSFGFQSAWLGAQGQ 195

Query: 199 VSMADIVKMGRPHNKAPPHKNV-----NNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEP 253
           VSMADIVKMG+P +K+   +N      ++H+ +   +  +    HS+   S V+E +S P
Sbjct: 196 VSMADIVKMGKPQSKSSSMQNTYLQGSSSHNSVPFQSTPTLPNFHSAPRASTVTEAHSGP 255

Query: 254 EVATSQHVSPNDEWPSIE--HPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTDQ 311
            +  SQ  S NDEWPSIE   P  +SS +E          PA  EL+++P+NLS+D  +Q
Sbjct: 256 GI-MSQQASLNDEWPSIEPPQPVGISSSVE---------SPAVLELHSSPANLSLDSPNQ 305

Query: 312 QIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYNNMSSYQPH 371
            +    D+ +  E    +    NH   A +   N+ EDNSG +S+ ++NLY++M+SY PH
Sbjct: 306 HVHQ--DKAQVVESSSVDTIDVNHAAHASILGSNIPEDNSGSASVSDSNLYDDMNSYLPH 363

Query: 372 RHAFEHDEAHDG-TSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFG 430
           RH  EH+EA DG +S+SA  QQL+LQ +D+++P EED+ SV+IP+HLQ+H+ DC HLSFG
Sbjct: 364 RHVIEHNEAEDGVSSMSANFQQLSLQKEDQDSPPEEDNTSVVIPHHLQLHTPDCFHLSFG 423

Query: 431 SFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARYSLHMILFCYIIFFLPCNY 490
           SFG+G ++ FSG  A     +N+EE S  AD  S+ HS+AR                   
Sbjct: 424 SFGSGTNANFSGSGAFP--NSNVEESSAPADVSSVAHSEAR------------------- 462

Query: 491 VIFDLFGGRNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQE 550
                    N EYY D+   + SD N+ +R + + G Y++P     +EV KQES E  Q 
Sbjct: 463 ---------NSEYYEDD--GANSDGNLIHRTSASGGYYETPTTQ--AEV-KQESSENAQA 508

Query: 551 NQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSMMAYTNSLPST-LLTSNVQ 609
           N Y+FPSS+PG++YE+ Q     F   Q SS+MQNL    +M+AYTN+L +  LL S  Q
Sbjct: 509 NLYAFPSSSPGFSYESNQPSEIPFI--QNSSEMQNLE--RAMLAYTNTLSNNMLLASTSQ 564

Query: 610 PAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASV 669
             RE D QYSPFP TQS+P KYSN ASSI+GP++SMPE LR +SI+T+QPT    P ++V
Sbjct: 565 TVRE-DPQYSPFPDTQSVP-KYSNAASSITGPSMSMPEVLRTSSITTSQPT----PQSNV 618

Query: 670 ATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLA 729
           A GPA+P HLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQ+LA
Sbjct: 619 AAGPAVPQHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQALA 678

Query: 730 AAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGS 789
           A VLPQYKNS+SVSSLPQSAA+ASGYGFG+STSIPGGNFPLN PTAPAG+++GY+D + S
Sbjct: 679 A-VLPQYKNSISVSSLPQSAAIASGYGFGSSTSIPGGNFPLNPPTAPAGSSIGYEDAISS 737

Query: 790 QYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHF 849
           QYKD+NHL+SLQQNDN AMW+HGPGSRTMSAVPAS YY  QGQNQQ  GFRQ QQPSQ +
Sbjct: 738 QYKDSNHLLSLQQNDNPAMWIHGPGSRTMSAVPASAYYGLQGQNQQSSGFRQAQQPSQQY 797

Query: 850 GALGYPNFYHSQTGMSLEHQQQNPRDATLGGSQAQPSKQTQQLWQNSY 897
           GALGYPNFYHSQ G+SL+ QQQ  RDA+LGGSQ Q  KQ+QQ+WQNSY
Sbjct: 798 GALGYPNFYHSQAGISLDGQQQTLRDASLGGSQGQQPKQSQQIWQNSY 845

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505951|ref|XP_004162612.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101224560 [Cucumis sativus]

 Score =  863 bits (2231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/888 (55%), Positives = 625/888 (70%), Gaps = 70/888 (7%)

Query: 20  IPAGSRKIVQSLKEIVN-CPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKE 78
           IP   RK+VQSLKEIVN C + EIYA L+ECNMDP+EAVNRLL+QDPFHEVKSKR+K+KE
Sbjct: 17  IPPEWRKMVQSLKEIVNNCTDQEIYATLRECNMDPDEAVNRLLTQDPFHEVKSKREKKKE 76

Query: 79  SKDTTDSRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSNESGTLQSKPAYKKENGTHGYA 138
           +KD  DSRSRG+S  S+R  +GGTDRY  RS +  F S+++G   SKP YKK+  +    
Sbjct: 77  NKDPIDSRSRGSSIPSSRTSKGGTDRYAGRSSSIQFGSSDTGLSSSKPVYKKKXASDHAG 136

Query: 139 GSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGDGISSSSQPSSGFQSSWLGVPGQ 198
            SS+S      N+   + P +S+++ TENK   + +GDG  SSSQ S GFQS+WLG  GQ
Sbjct: 137 SSSASGQ--SGNHSFYQFPSHSNNVATENKLSGLGAGDGAISSSQTSFGFQSAWLGAQGQ 194

Query: 199 VSMADIVKMGRPHNKAPPHKNV-----NNHHVLAPPAAVSHQELHSSQGHSKVSEFNSEP 253
           VSMADIVKMG+P +K+   +N      ++H+ +   +  +    HS+   S V+E +S P
Sbjct: 195 VSMADIVKMGKPQSKSSSMQNTYLQGSSSHNSVPFQSTPTLPNFHSAPRASTVTEAHSGP 254

Query: 254 EVATSQHVSPNDEWPSIE--HPPAMSSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTDQ 311
            +  SQ  S NDEWPSIE   P  +SS +E          PA  EL+++P+NLS+D  +Q
Sbjct: 255 GI-MSQQASLNDEWPSIEPPQPVGISSSVE---------SPAVLELHSSPANLSLDSPNQ 304

Query: 312 QIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDNSGGSSLFENNLYNNMSSYQPH 371
            +    D+ +  E    +    NH   A +   N+ EDNSG +S+ ++NLY++M+SY PH
Sbjct: 305 HVHQ--DKAQVVESSSVDTIDVNHAAHASILGSNIPEDNSGSASVSDSNLYDDMNSYLPH 362

Query: 372 RHAFEHDEAHDG-TSVSAKLQQLNLQNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFG 430
           RH  EH+EA DG +S+SA  QQL+LQ +D+++P EED+ SV+IP+HLQ+H+ DC HLSFG
Sbjct: 363 RHVIEHNEAEDGVSSMSANFQQLSLQKEDQDSPPEEDNTSVVIPHHLQLHTPDCFHLSFG 422

Query: 431 SFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDARYSLHMILFCYIIFFLPCNY 490
           SFG+G ++ FSG  A     +N+EE S  AD  S+ HS+AR                   
Sbjct: 423 SFGSGTNANFSGSGAFP--NSNVEESSAPADVSSVAHSEAR------------------- 461

Query: 491 VIFDLFGGRNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQE 550
                    N EYY D+   + SD N+ +R + + G Y++P     +EV KQES E  Q 
Sbjct: 462 ---------NSEYYEDD--GANSDGNLIHRTSASGGYYETPTTQ--AEV-KQESSENAQA 507

Query: 551 NQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSMMAYTNSLPST-LLTSNVQ 609
           N Y+FPSS+PG++YE+ Q     F   Q SS+MQNL    +M+AYTN+L +  LL S  Q
Sbjct: 508 NLYAFPSSSPGFSYESNQPSEIPFI--QNSSEMQNLE--RAMLAYTNTLSNNMLLASTSQ 563

Query: 610 PAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASV 669
             RE D QYSPFP TQS+P KYSN ASSI+GP++SMPE LR +SI+T+QPT    P ++V
Sbjct: 564 TVRE-DPQYSPFPDTQSVP-KYSNAASSITGPSMSMPEVLRTSSITTSQPT----PQSNV 617

Query: 670 ATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLA 729
           A GPA+P HLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQ+LA
Sbjct: 618 AAGPAVPQHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQALA 677

Query: 730 AAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGS 789
           A VLPQYKNS+SVSSLPQSAA+ASGYGFG+STSIPGGNFPLN PTAPAG+++GY+D + S
Sbjct: 678 A-VLPQYKNSISVSSLPQSAAIASGYGFGSSTSIPGGNFPLNPPTAPAGSSIGYEDAISS 736

Query: 790 QYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSFQGQNQQPGGFRQGQQPSQHF 849
           QYKD+NHL+SLQQNDN AMW+HGPGSRTMSAVPAS YY  QGQNQQ  GFRQ QQPSQ +
Sbjct: 737 QYKDSNHLLSLQQNDNPAMWIHGPGSRTMSAVPASAYYGLQGQNQQSSGFRQAQQPSQQY 796

Query: 850 GALGYPNFYHSQTGMSLEHQQQNPRDATLGGSQAQPSKQTQQLWQNSY 897
           GALGYPNFYHSQ G+SL+ QQQ  RDA+LGGSQ Q  KQ+QQ+WQNSY
Sbjct: 797 GALGYPNFYHSQAGISLDGQQQTLRDASLGGSQGQQPKQSQQIWQNSY 844

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519233|ref|XP_003629905.1| hypothetical protein MTR_8g088190 [Medicago truncatula] gi|355523927|gb|AET04381.1| hypothetical protein MTR_8g088190 [Medicago truncatula]

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/931 (55%), Positives = 636/931 (68%), Gaps = 100/931 (10%)

Query: 1   MSGKGGGGGVGKG-NNGISSIPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVN 58
           MSGK GG    KG ++ +S IPA SRK+VQSLKEIV N P++EIYA LK+CNMDPNEAV+
Sbjct: 1   MSGKVGGQ---KGTSSSLSGIPAASRKMVQSLKEIVSNIPDNEIYATLKDCNMDPNEAVS 57

Query: 59  RLLSQDPFHEVKSKRDKRKESKDTTDSRSRGAS----NTSNRGGRGGTDRYGVR------ 108
           RLLSQDPFHEVKSKR+K+KE KDTT+ RSRG++    +    GGR G+DRY  R      
Sbjct: 58  RLLSQDPFHEVKSKREKKKEGKDTTEPRSRGSNYNIPSRGGGGGRTGSDRYAGRGGGGGG 117

Query: 109 SGAAYFTSNESGTLQSKPAYKKENGTHGYAGSSSSAAG-VVANNMNQRPPFYSDDMPTEN 167
           + +  F++N+ G  QSKP +KKENGT  Y  SS+S A  V+ NN+N++PP +SD +    
Sbjct: 118 ASSNQFSNNDYGVPQSKPVFKKENGTPAYGSSSTSYASSVMDNNVNRQPPSWSDSVGVH- 176

Query: 168 KTLEVVSGDGISSSSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKAP-PHKNV---NNH 223
                   DG+SSSS    G QS+W   PGQVSMADIVKMGRP  KA  P  +V   N+ 
Sbjct: 177 --------DGLSSSSH-HGGLQSAWSASPGQVSMADIVKMGRPQAKASVPKSSVHSGNHQ 227

Query: 224 HVLAPPAAVSHQELHSSQGHSKVSEFNSEPEVATSQH---VSPN----DEWPSIEHPPAM 276
           + ++ PAA SH  L+ ++  ++      EP V  S     + PN    DEWPS+EHPP +
Sbjct: 228 NAVSTPAA-SHHNLNVTEATNEWPSI--EPNVQQSDEWPSIDPNVQQSDEWPSVEHPPIV 284

Query: 277 SSVLEGSAQSDLYTKPAHSELYTNPSNLSVDRTDQQIEAQLDEVEEEEDGPHEIPKTNHV 336
           +          +   P +SE YTN SN      ++Q++   +E   E D P E    + V
Sbjct: 285 A----------VDAHP-NSEYYTNTSNFG--EANRQLQNHGNEFVAE-DSPVEDENPDDV 330

Query: 337 GSAPVSSRNMQEDNSGGSSLFENNLYNNMSSYQPHRHAFEHDEAHDG-TSVSAKLQQLNL 395
           GSA + ++ + +DN G +S +++NLY +++SYQ HRH F+ +EA +G +SV+  L+QLNL
Sbjct: 331 GSASIPAKIISDDNPGTASGYDDNLYKDINSYQSHRHPFDDNEAENGVSSVATNLEQLNL 390

Query: 396 QNDDREAPVEEDSPSVIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGP--FASRPLKNNL 453
             D++    EED+  V+IPNHLQ+H+ +C  LSFGSFG   ++  SG    +SRPL++NL
Sbjct: 391 HTDEQGIEPEEDNSDVLIPNHLQLHTPECFSLSFGSFGPKQNATVSGAGTHSSRPLQSNL 450

Query: 454 EERSETADAPSIGHSDARYSLHMILFCYIIFFLPCNYVIFDLFGGRNPEYYGDEHLRSTS 513
           EE S   D  +IG SD +                            NP+YYGDEH+ +TS
Sbjct: 451 EETSGATDVSAIGSSDVK----------------------------NPDYYGDEHIATTS 482

Query: 514 DAN-IANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNS 572
           D N I++   V A  Y+  ++SQP E LK E  E  QENQYSFPSS+  + YENAQQ   
Sbjct: 483 DGNNISHITGVDARTYEHSSISQP-EALKSEPSETAQENQYSFPSSSHEFTYENAQQPEV 541

Query: 573 AFAHQQASSQMQNLAPFSSMMAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYS 632
           A+ H Q SSQ+QNL+PFSS+MAYTNSLP+ LL S VQ  RE D+ YSPFP+TQ+MP KYS
Sbjct: 542 AYPHSQTSSQIQNLSPFSSVMAYTNSLPNALLASTVQTPRE-DIPYSPFPVTQAMPAKYS 600

Query: 633 NTASSISGPTISMPEALRGASIST--AQPTQQTMPGASVATGPALPPHLAVHPYSQPTLP 690
           N ASSI G TI+M EALR  +IST  AQP QQ++PGA VATGP+LP HLAVHPYSQ    
Sbjct: 601 NMASSIGGSTINMSEALRANNISTPQAQPNQQSLPGAGVATGPSLPQHLAVHPYSQ---- 656

Query: 691 LGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAA 750
           LG FANMI YPF+PQSYTYMPS FQQAFAGNSTYHQSLAA VLPQYKNS+SVSSLPQSAA
Sbjct: 657 LGPFANMISYPFMPQSYTYMPSAFQQAFAGNSTYHQSLAA-VLPQYKNSISVSSLPQSAA 715

Query: 751 VASGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWV 810
           + SGYGFG+STSIPGGN+PLN   AP  TT+GYDDV+ SQYKDNNH+ISLQQN+N+ MWV
Sbjct: 716 IPSGYGFGSSTSIPGGNYPLNPSAAPTSTTIGYDDVINSQYKDNNHMISLQQNENNPMWV 775

Query: 811 HGPGSRTMSAVPASTYYSFQGQN-QQPGGFRQGQQPS-QHFGALGYP-NFYHSQTGMSLE 867
            GPGSRTMS VP STYYSFQGQN QQPG FRQ QQPS QHF   GYP NFYHSQ+G+SLE
Sbjct: 776 QGPGSRTMS-VPPSTYYSFQGQNQQQPGAFRQSQQPSQQHFAPHGYPNNFYHSQSGISLE 834

Query: 868 HQQQNPRDATLGG-SQAQPSKQTQQLWQNSY 897
           HQQQNPRDA+L G     P +  QQLWQNSY
Sbjct: 835 HQQQNPRDASLAGSQSQPPKQSQQQLWQNSY 865

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532397|ref|XP_003534759.1| PREDICTED: uncharacterized protein LOC100783978 [Glycine max]

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/918 (55%), Positives = 614/918 (66%), Gaps = 101/918 (11%)

Query: 1   MSGKGGGGGVGKGNNGISSIPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNR 59
           MSGKGGG  +       ++IPA SRK+VQSLKEIV N P+ EIYA LK+CNMDPNEAV+R
Sbjct: 1   MSGKGGGKALS------ATIPASSRKMVQSLKEIVSNFPDHEIYATLKDCNMDPNEAVSR 54

Query: 60  LLSQDPFHEVKSKRDKRKESKDTTDSRSRGA--SNTSNRGG-RGGTDRYGVRSGAAYFTS 116
           LLSQDPFHEVKSKR+K+KE KD T+SRSRG+  +NTS+RGG R GTDR G R GA  F S
Sbjct: 55  LLSQDPFHEVKSKREKKKEIKDPTESRSRGSGTNNTSSRGGGRAGTDRNGGRGGANQFGS 114

Query: 117 NESGTLQSKPAYKKENGTHGYAGSSSSAAGVVANNMNQRPPFYSDDMPTENKTLEVVSGD 176
           ++ G LQ KP YKKENG   Y GS+SSA  V+ NN N RP  YSD + TE KT     GD
Sbjct: 115 SDYG-LQGKPVYKKENGAPTYGGSTSSAPSVLGNNANMRPASYSDSVVTE-KTYAFSIGD 172

Query: 177 GISSSSQPSSGFQSSWLGVPGQVSMADIVKMGRPHNKAPPH----KNVNNHHVLAPPAAV 232
           G SSSSQ  +G QS+W G  GQVSMADIVKMGRP  +   H    ++ N+ +V  PPAA 
Sbjct: 173 GPSSSSQ-RAGVQSAWAGNTGQVSMADIVKMGRPQARPSMHNSSIQSGNHQNVFMPPAA- 230

Query: 233 SHQELHSSQGH-SKVSEFNSEPEVATSQHVSPNDEWPSIEHPPAMSSVLEGSAQSDLYTK 291
           S   LHSSQG+ SKVSE N+    A S +V  NDEWP IE+   +    +  A       
Sbjct: 231 SDNNLHSSQGYASKVSETNTNQGHAISDNVPQNDEWPCIENQHDVRVYADVDAH------ 284

Query: 292 PAHSELYTNPSNLSVDRTDQQIEAQLDEVEEEEDGPHEIPKTNHVGSAPVSSRNMQEDNS 351
            A+SE Y N S+ +    D Q +  LDE    EDG   +   ++  SA +S+++  EDN+
Sbjct: 285 -ANSECYANSSSFA--EADWQQKTHLDE-HGAEDG--SVENADNAESASISAKSTSEDNT 338

Query: 352 GGSSLFENNLYNNMSSYQPHRHAFEHDEAHDGTSVSAKLQQLNLQNDDREAPVEEDSPSV 411
           G                             D +SV+A ++QLN+Q DD+    E+D+PSV
Sbjct: 339 GAED--------------------------DVSSVAANIEQLNIQRDDQGTAQEDDNPSV 372

Query: 412 IIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDAR 471
           +IPNHLQ+H+ +C +LSFGSFG+    + SG F SRPLK+NLE+ S  ADA +I +SD R
Sbjct: 373 VIPNHLQLHTPECMNLSFGSFGSANPLSGSGSFTSRPLKSNLEDTSGAADASTIENSDTR 432

Query: 472 YSLHMILFCYIIFFLPCNYVIFDLFGGRNPEYYGDEHLRST-SDANIANRPNVTAGDYDS 530
                                       NP+YYGDEHL +T SD N+     V+AG Y+ 
Sbjct: 433 ----------------------------NPDYYGDEHLTTTTSDGNLVQGTGVSAGTYEH 464

Query: 531 PAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFS 590
            ++SQ  E LK E  E  QENQYSFPS + G+NYENAQQ    F   Q SSQ QNLAPFS
Sbjct: 465 TSISQ--EALKPEPPEIAQENQYSFPSHSHGFNYENAQQPEVTFPVSQTSSQNQNLAPFS 522

Query: 591 SMM-AYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEAL 649
            +M A+TNSLPS LL+S VQ ARE D+ Y PFP TQSMPTKYS+ ASSI G TI+M EAL
Sbjct: 523 GVMQAHTNSLPSALLSSPVQTARE-DIPYLPFPATQSMPTKYSDIASSIGGSTITMSEAL 581

Query: 650 RGASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTY 709
           R + IS  QP  QT+ GA VATGP  P HLA+HPYSQP+LPLGHFANMI YPFLPQSYTY
Sbjct: 582 RASGISAPQPNAQTLSGAGVATGPTHPQHLAMHPYSQPSLPLGHFANMISYPFLPQSYTY 641

Query: 710 MPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGNSTSIPGGNFP 769
           MPS FQQ FAGN+TY QSL AAVLPQYKN+VS SSLPQSAA+  GYGFG+STSIPGGNF 
Sbjct: 642 MPSAFQQTFAGNNTYPQSL-AAVLPQYKNNVSASSLPQSAAIPPGYGFGSSTSIPGGNFS 700

Query: 770 LNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDNSAMWVHGPGSRTMSAVPASTYYSF 829
           LN P AP GTT+GY+DV+ SQ+KDNNH++SLQQN+NS MWV GPGSRTMSAVP S YY+ 
Sbjct: 701 LNPPAAPTGTTIGYEDVINSQFKDNNHMMSLQQNENSPMWVQGPGSRTMSAVPPSNYYNL 760

Query: 830 Q----------GQNQQPGGFRQGQQPSQHFGALGYPNFYHSQTGMSLEHQQQNPRDATLG 879
           Q           Q  Q    +Q Q P QHFG LGYPNFY SQTG+SLE Q QNPR+A+LG
Sbjct: 761 QGQNQQQPGGFRQRHQQQQQQQQQPPLQHFGPLGYPNFYQSQTGISLEQQPQNPREASLG 820

Query: 880 GSQAQPSKQTQQLWQNSY 897
           G Q+QPSKQ+QQ+WQNSY
Sbjct: 821 GPQSQPSKQSQQIWQNSY 838

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	897
TAIR|locus:2013713	831	AT1G29370 "AT1G29370" [Arabido	0.360	0.388	0.586	1.5e-149
TAIR|locus:2013693	831	AT1G29350 "AT1G29350" [Arabido	0.360	0.388	0.583	1.2e-147
TAIR|locus:2117671	758	AT4G18150 "AT4G18150" [Arabido	0.364	0.431	0.340	4.1e-60
TAIR|locus:2170433	607	AT5G46380 "AT5G46380" [Arabido	0.111	0.164	0.415	2.3e-26
TAIR|locus:2091087	841	AT3G07660 "AT3G07660" [Arabido	0.494	0.527	0.226	2.4e-24
TAIR|locus:2088202	848	AT3G13990 "AT3G13990" [Arabido	0.051	0.054	0.553	1.2e-11
TAIR|locus:2090019	567	GIP1 "GBF-interacting protein	0.119	0.188	0.295	3.9e-06
UNIPROTKB|Q290X3	1327	lig "Protein lingerer" [Drosop	0.293	0.198	0.245	7.1e-05
FB|FBgn0085362	578	Vml "Vitelline membrane-like"	0.272	0.422	0.276	0.00011
DICTYBASE|DDB_G0294533	2800	roco5 "LRRK family protein kin	0.209	0.067	0.285	0.00018

TAIR|locus:2013713 AT1G29370 "AT1G29370" [Arabidopsis thaliana (taxid:3702)]

 Score = 978 (349.3 bits), Expect = 1.5e-149, Sum P(2) = 1.5e-149
 Identities = 203/346 (58%), Positives = 249/346 (71%)

Query:   499 RNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSS 558
             RN E+YGDEHL ST++ N+ + P    G+YD  ++    EVLKQE+ E  QE+QY+F  S
Sbjct:   409 RNTEFYGDEHLGSTTNGNMVHTP--ATGNYDD-SLETRREVLKQENSEGAQEHQYTFTQS 465

Query:   559 APGYNYENA--QQLNSAF--AHQQASSQMQNLAPFSSMM-AYTNSLPSTLLTSNVQPARE 613
               GY YENA  QQ+NSA+  +H  + +QM NL   S++M  Y++S+P+TLL    Q ARE
Sbjct:   466 EQGYAYENAKQQQMNSAYDASHTNSQNQMHNLDSLSNVMQGYSHSVPNTLLAQTAQNARE 525

Query:   614 PDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASVATGP 673
              D QYSPF   QSM ++ SN ASS+ G +ISMPEALRG+ I   QPTQQT+PGA++ATGP
Sbjct:   526 LDFQYSPFSAQQSMQSRTSNNASSLGGQSISMPEALRGSGIPATQPTQQTLPGANIATGP 585

Query:   674 ALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVL 733
             ALP  L +H YSQPTLPL H+ANMIGYP +PQ+Y YMPS FQQ FAGNS YHQ LAA +L
Sbjct:   586 ALPQQLPMH-YSQPTLPLTHYANMIGYPLMPQNYPYMPSAFQQTFAGNSAYHQQLAA-LL 643

Query:   734 PQYKNSVSVSSLPQSA-AVASGYGFGNSTSI-PGGNFPLNTPTAPAGTTMGYDDVLGSQY 791
             PQYK +VS  +LPQSA A AS YGFGNST++   GNFPLN  +A  GTT+GYDDVL SQY
Sbjct:   644 PQYKTNVSPGNLPQSATAPASAYGFGNSTNVGSAGNFPLNQQSATTGTTLGYDDVLSSQY 703

Query:   792 KDNNHLISLQQ----------NDNSAMWVHGPGSRTMSAVPASTYY 827
             K+N HL++LQQ          N+NSAMW  G GSRTMS VP +TYY
Sbjct:   704 KEN-HLLALQQQQQQQQHQQQNENSAMWHQGHGSRTMSGVPTNTYY 748

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2013693 AT1G29350 "AT1G29350" [Arabidopsis thaliana (taxid:3702)]

 Score = 974 (347.9 bits), Expect = 1.2e-147, Sum P(2) = 1.2e-147
 Identities = 202/346 (58%), Positives = 249/346 (71%)

Query:   499 RNPEYYGDEHLRSTSDANIANRPNVTAGDYDSPAVSQPSEVLKQESVEALQENQYSFPSS 558
             RN E+YGDEHL ST++ N+ + P    G+YD  ++    EVLKQE+ E  QE+QY+F  S
Sbjct:   409 RNTEFYGDEHLGSTTNGNMVHTP--ATGNYDD-SLETRREVLKQENSEGAQEHQYTFTQS 465

Query:   559 APGYNYENA--QQLNSAF--AHQQASSQMQNLAPFSSMM-AYTNSLPSTLLTSNVQPARE 613
               GY YENA  QQ+NSA+  +H  + +QM NL   S++M  Y++S+P+TLL    Q ARE
Sbjct:   466 EQGYAYENAKQQQMNSAYDASHTNSQNQMHNLDSLSNVMQGYSHSVPNTLLAQTAQNARE 525

Query:   614 PDLQYSPFPMTQSMPTKYSNTASSISGPTISMPEALRGASISTAQPTQQTMPGASVATGP 673
              D QYSPF   QSM ++ SN ASS+ G +ISMPEALRG+ I   QPTQQT+PGA++ATGP
Sbjct:   526 LDFQYSPFSAQQSMQSRTSNNASSLGGQSISMPEALRGSGIPATQPTQQTLPGANIATGP 585

Query:   674 ALPPHLAVHPYSQPTLPLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQSLAAAVL 733
             ALP  L +H YSQPTLPL H+ANMIGYP +PQ+Y YMPS FQQ FAGNS YHQ LAA +L
Sbjct:   586 ALPQQLPMH-YSQPTLPLTHYANMIGYPLMPQNYPYMPSAFQQTFAGNSAYHQQLAA-LL 643

Query:   734 PQYKNSVSVSSLPQSA-AVASGYGFGNSTSI-PGGNFPLNTPTAPAGTTMGYDDVLGSQY 791
             PQYK +VS  +LPQSA A AS YGFGNST++   GNFPLN  +A  GTT+GY+DVL SQY
Sbjct:   644 PQYKTNVSPGNLPQSATAPASAYGFGNSTNVGSAGNFPLNQQSATTGTTLGYEDVLSSQY 703

Query:   792 KDNNHLISLQQ----------NDNSAMWVHGPGSRTMSAVPASTYY 827
             K+N HL++LQQ          N+NSAMW  G GSRTMS VP +TYY
Sbjct:   704 KEN-HLLALQQQQQQQQHQQQNENSAMWHQGHGSRTMSGVPTNTYY 748

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2117671 AT4G18150 "AT4G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 4.1e-60, Sum P(2) = 4.1e-60
 Identities = 131/385 (34%), Positives = 179/385 (46%)

Query:   535 QPSEVLK--QESVEALQENQYSFPSSAPGYNYENAQQLNSAFAHQQASSQMQNLAPFSSM 592
             QPS +    +E + A  ++ +  P +   Y  E A+Q  +A  ++Q S Q+ +   F + 
Sbjct:   395 QPSALNDNLEEPLVAEDDSSFRHPDTN-FYGEEEAEQPRNAVTNEQVSYQIDSSYRFENN 453

Query:   593 MAY-----TNSLPSTLLT-SNV-QPAREPDLQYSPFPMT----QSMPTKYSNTASSISGP 641
               +     TN     L T  N+ Q      L  +  P      +     YS   +++   
Sbjct:   454 QLFHPPSETNPQRQNLDTYPNIMQQGYTSSLPNTLLPSGIQDGRESNLHYS-PFTTLYNT 512

Query:   642 TISMPEALRGASISTAQPTQQTMPGASVATGPALPPHLAVHPYS-QPTLPLGHFANMIGY 700
              ISM EALR ASIS   P Q  +P A       L  HLA++PYS QP +PLGH+ N+I Y
Sbjct:   513 EISMAEALRAASIS---P-QNAIPSAGQQAA-TLAQHLALNPYSHQPEMPLGHYGNLISY 567

Query:   701 PFLPQSYT-YMPSGFQQAF-AGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFG 758
             PF+ Q Y  +M S FQQ F  GN   HQSL   +L QYK   +   +P  +A    YGFG
Sbjct:   568 PFMAQCYNPFMLSAFQQVFPTGN---HQSLVD-MLMQYKTQTTAPPVPPPSA----YGFG 619

Query:   759 NSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISL--QQNDNSAMWVHGPGSR 816
                ++   NFPLN PT+ A +   Y+DVL SQ+ ++NHL S   QQN+ +  W  G  + 
Sbjct:   620 GG-AVSSNNFPLN-PTSAANS---YEDVLSSQFNESNHLASSLQQQNEKTTAWHQGQQAN 674

Query:   817 TMSAVPASTYYXX-------------XXXXXXXXXXXXXXXXXXHFGALGYPNFYHSQTG 863
             +   VP S YY                                 H+G  GY + YHSQ  
Sbjct:   675 SR-VVPGSGYYSYPGHQNQQPPGFRQAQQLQHQQQSSQQQQQQQHYGGHGYVSPYHSQAV 733

Query:   864 MSLEH------QQQNPRDATLGGSQ 882
             MSLEH      QQQN RDA+    Q
Sbjct:   734 MSLEHLHHQYQQQQNARDASKQSQQ 758

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170433 AT5G46380 "AT5G46380" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 2.3e-26, Sum P(4) = 2.3e-26
 Identities = 42/101 (41%), Positives = 58/101 (57%)

Query:    17 ISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVXXXXXXX 76
             +++IP  +R IV+S+KEIVNC E EIYAML ECNM+ +EA+ RLLSQD F EV       
Sbjct:     8 VNAIPEYTRAIVRSMKEIVNCSEQEIYAMLVECNMNADEAITRLLSQDSFQEVKSKRDKK 67

Query:    77 XXXXXXXXXRSRGASNTSNRGGRGGTDRYGVRSGAAYFTSN 117
                      +     N  ++  + G+D+ G     +Y TSN
Sbjct:    68 KEAKDALEIQRLSGRNQYHKS-KNGSDQNGGNKLNSYGTSN 107

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2091087 AT3G07660 "AT3G07660" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 2.4e-24, Sum P(3) = 2.4e-24
 Identities = 117/516 (22%), Positives = 194/516 (37%)

Query:   411 VIIPNHLQVHSSDCSHLSFGSFGTGIDSAFSGPFASRPLKNNLEERSETADAPSIGHSDA 470
             VIIPNH+ V  ++ + LSFGSF    D + +    + P       +SE   AP + H+  
Sbjct:   369 VIIPNHILVPEAERTKLSFGSFDA--DFSITSSTVAFP-------QSEKRSAP-LSHNSQ 418

Query:   471 RYSLHMILFCYIIFFLPCNYVIFDLFGGRNPEYYGDEHLRSTSDANIANRPNVTAGDYDS 530
                     F    F  P  + I         E   D ++ S S + +   P+  AG+ ++
Sbjct:   419 EVEES---FAEEEFRHPTVHSI---------EKEEDGNVYSESPSQV---PDNMAGEGNT 463

Query:   531 PAVSQPS-EVLKQESVEALQENQYSF---PSSAPGYNYENAQQLNSAFAHQQASSQMQNL 586
                + P  +V KQE++   + NQ SF   PS+  G         +  F  + +  Q ++ 
Sbjct:   464 ATNTAPEYDVTKQENMLESESNQNSFDQVPSNIIGIVPPAPGNQHPQF--ETSDPQARDA 521

Query:   587 APFSSMMAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTISMP 646
                 S M       ++      +   + D + SPF ++  + +K++         + +M 
Sbjct:   522 LRLPSFMGQQPFDTASYYAQFYRSGPDSDGRVSPF-VSPGVASKFNGITVLPPHSSQTMQ 580

Query:   647 EALRGASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFA-NMI--GY--P 701
             E      +STA P       A +           V  +  P L + H+  N +  GY  P
Sbjct:   581 EGGNNLVLSTASPPPLVTQAAGLMQSSIPVTQQPVPVFRPPGLHMSHYPPNYVPYGYFSP 640

Query:   702 FL---PQSYTYMPSG-FQQAFAGNSTYHQSLAAAV-----LPQYKNSVSVSSLPQSAAVA 752
             F    P  + Y+ +G + Q    +  Y      A      LP YK   +  ++     + 
Sbjct:   641 FYLPPPTMHQYLSNGAYAQQPQASGVYPPPPGTATGGKYTLPHYKPGTNTGNMTH-VGIT 699

Query:   753 SGYGFGNSTSIPGGNFPLNTPTAPAGTTMGYDDVLGSQYKDNN-HLISLQQNDNSAMWVH 811
              GYG     S P G  P  T  A AG +   +D+   Q K+NN +  + QQ++   +W+ 
Sbjct:   700 GGYG-PTYGSFPAGYNP--TSAASAGNSTSNEDLNSLQLKENNGYSTTGQQSEALPVWIT 756

Query:   812 GPGSRTMSAVPASTYYXXXXXXXXXXXXXXXXXXXXHFGALGYPNFYH---SQTGMSLEH 868
             GPG      VP+S Y                       G + +P  YH   + T   + H
Sbjct:   757 GPGRD----VPSSFY-------GLQHHGQHVTYAPAQAGHVAFPGMYHPGQAVTATGVHH 805

Query:   869 QQQNPRDATLGGSQAQPS-------KQTQQLWQNSY 897
                       G     P+       +QTQ  W ++Y
Sbjct:   806 PLLQQSQGVAGAEMVAPAPNVFQQPQQTQMNWPSNY 841

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088202 AT3G13990 "AT3G13990" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
 Identities = 26/47 (55%), Positives = 38/47 (80%)

Query:    24 SRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQDPFHEV 69
             ++K++QS+KE+V+   +++IY  LKE NMD NEAV +L+ QDPFHEV
Sbjct:    19 AKKMIQSIKEVVDSHSDADIYTALKEANMDANEAVEKLIHQDPFHEV 65

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2090019 GIP1 "GBF-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
 Identities = 34/115 (29%), Positives = 52/115 (45%)

Query:    19 SIPAGSRKIVQSLKEIVNCPESE--IYAMLKECNMDPNEAVNRLLSQDPFHEVXXXXXXX 76
             SIPA   + +Q+++E+     S+  I+++ KEC  DP+E   +LL  D FHEV       
Sbjct:    13 SIPADLLQTIQNIREVTGKQHSDEDIFSVFKECFSDPHETTQKLLYLDTFHEVRSKRERK 72

Query:    77 XXXXX-XXXXRSR-GASNTSNR---GGRGGTDRYGVRSGAAYFTSNESGTLQSKP 126
                       R R G  N ++       G +  +  +SGA +     SGT  S P
Sbjct:    73 KENLVPNTQGRGRTGRKNFASSYTDASNGRSAAFKKQSGANHIIGG-SGTASSAP 126

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0043388 "positive regulation of DNA binding" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IDA

UNIPROTKB|Q290X3 lig "Protein lingerer" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 120 (47.3 bits), Expect = 7.1e-05, Sum P(4) = 7.1e-05
 Identities = 73/297 (24%), Positives = 116/297 (39%)

Query:   527 DYDSPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYEN-AQQLNSAFAHQQASSQMQN 585
             DY S +  Q    L       LQ +Q     SA GY   + AQQ   + +   AS+ +  
Sbjct:   621 DYQSKSQQQQQSTL----TAGLQSSQIGDALSAAGYAARSTAQQQQQSASSTVASNALDQ 676

Query:   586 LA---PF----SSMMAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSI 638
             L    P+    S+  AY N+  S+   S    A +   Q S    + S    Y+N  SS+
Sbjct:   677 LTKNDPYGQASSASSAYQNAYQSSA-ASKANSAYQTSAQGS---YSSS---SYANVQSSV 729

Query:   639 SGPTISMPEALRGASISTAQPTQQTMPGASVATGPALPPHLAVHPYSQPTLPLGHFANM- 697
             +             ++++ Q  QQT+ G   + G  +P   +    S   +P+G  A+  
Sbjct:   730 ANSYQQQGYGSYQPNVNSYQQ-QQTVAGTQPSVGGVVPGSGSA---STQNIPVGGSASQN 785

Query:   698 -----IGYPFLPQSYTYMPSGFQ--QAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAA 750
                      +L   Y+   S +Q  Q+  GNS+     A+    QY  S   S+  + A+
Sbjct:   786 SSSGNASSAYLTSGYSTPQSAYQSSQSVYGNSSGFAGSASNASSQYA-SFGTSAKLKDAS 844

Query:   751 VASGYGFGNSTSIPGG--NFPLNTPTAPAGTTMGYDDVLGSQYKDNNHLISLQQNDN 805
              ASG    +S S   G  +   +T    AG   G   V  +   +NN++     N N
Sbjct:   845 TASGAAHYDSVSTSSGVSSSSGSTGNGAAGAVSGQPGVNQASVSNNNNVSGSSSNSN 901

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISS

GO:0007620 "copulation" evidence=ISS

FB|FBgn0085362 Vml "Vitelline membrane-like" [Drosophila melanogaster (taxid:7227)]

 Score = 139 (54.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 73/264 (27%), Positives = 106/264 (40%)

Query:   530 SPAVSQPSEVLKQESVEALQENQYSFPSSAPGYNYENAQQLNSA----FAHQQASSQMQN 585
             +P+ S PS      S  AL+   YS P+ AP Y+   A   +S+    ++   +SS    
Sbjct:   264 APSYSAPSYSAPASSYSALKAPSYSAPA-APSYSAPAAPSYSSSASPSYSSPASSSYSAP 322

Query:   586 LAP-FSSMMAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPTKYSNTASSISGPTIS 644
              AP +S+  A + S P+    S   PA  P   YS  P + S     + + S+ + P+ S
Sbjct:   323 AAPTYSAPKAQSYSAPAA--PSYSAPAA-PS--YSA-PASSSYSAPAAPSYSAPAAPSYS 376

Query:   645 MPEALRGASISTAQPTQQTMPGASVATGPALPPHLAV--HPYSQPTLPLGHFANMIGY-- 700
              P A    S S    +  + P A   + PA P + A     YS P  P         Y  
Sbjct:   377 APAA---PSYSAPASSSYSAPAAPSYSAPAAPSYSAPASSSYSAPAAPSYSAPAAPSYSA 433

Query:   701 PFLPQ-SYTYMPSGFQQAFAGNSTYHQSLAAAVLPQYKNSVSVSSLPQSAAVASGYGFGN 759
             P  P  S    PS    A +G S      A +  P    S   +S   SA  +SG    +
Sbjct:   434 PAAPSYSAPAAPSYSAPASSGYSAARAYSAGSAAPASGYSAPKTSSGYSAPASSGSPAAS 493

Query:   760 STSIPGGNFPLNTPTAPAGTTMGY 783
             S S P  +   +  +APA  + GY
Sbjct:   494 SYSAPASSTASSGYSAPASKSSGY 517

GO:0009950 "dorsal/ventral axis specification" evidence=IGI

GO:0060388 "vitelline envelope" evidence=IDA

GO:0007305 "vitelline membrane formation involved in chorion-containing eggshell formation" evidence=ISM

GO:0008316 "structural constituent of vitelline membrane" evidence=ISM

GO:0035805 "egg coat" evidence=ISM

DICTYBASE|DDB_G0294533 roco5 "LRRK family protein kinase Roco5" [Dictyostelium discoideum (taxid:44689)]

 Score = 134 (52.2 bits), Expect = 0.00018, Sum P(3) = 0.00018
 Identities = 61/214 (28%), Positives = 90/214 (42%)

Query:   585 NLAPFSSMMAYTNSLPSTLLTSNVQPAREPDLQYSPFPMTQSMPT---KYSNTASSISGP 641
             NL+P S     T + P+T  T    P         P P ++S P+   + + TA++   P
Sbjct:  2590 NLSPTSISTPTTPTTPTTPTTPTT-PTNSTSSNLKPTPTSKSNPSSPPQIATTATATQTP 2648

Query:   642 T---ISM---PEALRGASISTAQ-----PTQQTMPGASVATGPALPPHLAVHPYSQP-TL 689
             T   IS+   P +L    + T Q     PT QT P  ++ T P LP  L+ +  ++P + 
Sbjct:  2649 TPSPISVLKPPRSLPQKPVGTTQTTSTPPTNQT-PNPTIVTRPPLPSSLSSNSINKPPSK 2707

Query:   690 PLGHFANMIGYPFLPQSYTYMPSGFQQAFAGNSTYHQS--LAAAVLPQY--KNSVSVS-- 743
             PL     +   P  P + +  P  F    AGN T  QS  L ++ L Q+   N+ S S  
Sbjct:  2708 PLPTPGGVTSPPPPPTTSSTTPIKFNSISAGNKTIGQSSTLPSSTLKQFTANNNTSPSGS 2767

Query:   744 -SLPQSAAVASGYGFGNSTSIPGGNFPLNTPTAP 776
              SLP S   +    F    +  GG      P  P
Sbjct:  2768 SSLPNSTVSSPSSSFLLRPT--GGTISKKLPAIP 2799

GO:0030587 "sorocarp development" evidence=IMP

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XI000498 hypothetical protein (911 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	897
pfam06972	60	pfam06972, DUF1296, Protein of unknown function (D	2e-31

>gnl|CDD|115617 pfam06972, DUF1296, Protein of unknown function (DUF1296)

 Score =  116 bits (293), Expect = 2e-31
 Identities = 41/60 (68%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 20 IPAGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKE 78
          IPA  RK +QS+KE+V    +++IYAMLKECNMDPNE V +LLSQD FHEVKSKR+K+KE
Sbjct: 1  IPAELRKTIQSIKEVVGKHSDADIYAMLKECNMDPNETVQKLLSQDTFHEVKSKREKKKE 60

This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function. Structural modelling suggests this domain may bind nucleic acids. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	897
PF06972	60	DUF1296: Protein of unknown function (DUF1296); In	99.9
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	97.78
smart00546	43	CUE Domain that may be involved in binding ubiquit	97.11
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	97.1
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	96.84
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	96.8
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	94.91
PRK06369	115	nac nascent polypeptide-associated complex protein	93.72
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	93.54
COG1308	122	EGD2 Transcription factor homologous to NACalpha-B	92.63
PRK09377	290	tsf elongation factor Ts; Provisional	92.37
CHL00098	200	tsf elongation factor Ts	91.81
PF11547	53	E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro	91.77
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	91.38
TIGR00116	290	tsf translation elongation factor Ts. This protein	91.07
PRK12332	198	tsf elongation factor Ts; Reviewed	90.55
PF03474	39	DMA: DMRTA motif; InterPro: IPR005173 This region	89.17
PF08938	79	HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This	88.94
COG0264	296	Tsf Translation elongation factor Ts [Translation,	87.85
KOG1071	340	consensus Mitochondrial translation elongation fac	83.8

>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function

Probab=99.90  E-value=4.9e-25  Score=185.06  Aligned_cols=59  Identities=86%  Similarity=1.268  Sum_probs=57.4

Q ss_pred             CCcchHHHHHhhhhccCC-ChHHHHHHHhhcCCCHHHHHHHhhcCCCccccccccccccc
Q 002640           20 IPAGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKRKE   78 (897)
Q Consensus        20 ip~~~rk~V~~ikEi~~~-seedi~~aL~ecn~D~n~Av~rLl~~~~~~EVkkKr~kkKe   78 (897)
                      ||+++||+||.||||+++ ||+|||+||+|||||||||++|||+||+|||||+||+||||
T Consensus         1 IP~~~rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~qD~FheVk~krdkkKE   60 (60)
T PF06972_consen    1 IPAASRKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQDPFHEVKSKRDKKKE   60 (60)
T ss_pred             CChHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhcCcHHHHHHhhhhccC
Confidence            899999999999999955 99999999999999999999999999999999999999997

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=97.78  E-value=2.7e-05  Score=61.65  Aligned_cols=38  Identities=32%  Similarity=0.433  Sum_probs=35.6

Q ss_pred             HHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002640           25 RKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        25 rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      +.+|++||||| +|+++.|..+|++|++|++.||+.||+
T Consensus         2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~   40 (42)
T PF02845_consen    2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE   40 (42)
T ss_dssp             HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            57899999999 999999999999999999999999997

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=97.11  E-value=0.00072  Score=53.69  Aligned_cols=40  Identities=28%  Similarity=0.388  Sum_probs=37.3

Q ss_pred             hHHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002640           24 SRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQ   63 (897)
Q Consensus        24 ~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~~   63 (897)
                      ..+.|..|+|+| +.+++.|-..|++|++|++.||+.||+.
T Consensus         2 ~~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~   42 (43)
T smart00546        2 NDEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG   42 (43)
T ss_pred             hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            457899999999 9999999999999999999999999984

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=97.10  E-value=0.00068  Score=52.38  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=32.1

Q ss_pred             HHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHh
Q 002640           25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRL   60 (897)
Q Consensus        25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rL   60 (897)
                      +++|++|+|+ |.+++++..||+.|++|+++||+.|
T Consensus         3 ~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    3 EEKVQQLMEM-GFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            6889999999 9999999999999999999999865

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>cd00194 UBA Ubiquitin Associated domain

Probab=96.84  E-value=0.0017  Score=49.69  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=34.2

Q ss_pred             HHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002640           25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      +++|++|+++ |.+++++..||+-|++|++.|++.|++
T Consensus         2 ~~~v~~L~~m-Gf~~~~~~~AL~~~~~d~~~A~~~L~~   38 (38)
T cd00194           2 EEKLEQLLEM-GFSREEARKALRATNNNVERAVEWLLE   38 (38)
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            5789999997 999999999999999999999998874

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00165 UBA Ubiquitin associated domain

Probab=96.80  E-value=0.0018  Score=49.40  Aligned_cols=36  Identities=22%  Similarity=0.305  Sum_probs=33.6

Q ss_pred             HHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhh
Q 002640           25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLL   61 (897)
Q Consensus        25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl   61 (897)
                      +++|++|+++ |.+++++..||+.|++|++.|++.|+
T Consensus         2 ~~~v~~L~~m-Gf~~~~a~~aL~~~~~d~~~A~~~L~   37 (37)
T smart00165        2 EEKIDQLLEM-GFSREEALKALRAANGNVERAAEYLL   37 (37)
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence            6789999999 99999999999999999999999875

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=94.91  E-value=0.032  Score=44.64  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=33.4

Q ss_pred             HHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002640           25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      +++|.+.++|+|++++.....|+.||.|++.||+..++
T Consensus         1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~   38 (43)
T PF14555_consen    1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFD   38 (43)
T ss_dssp             HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            57899999999999999999999999999999987665

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=93.72  E-value=0.08  Score=51.41  Aligned_cols=39  Identities=28%  Similarity=0.285  Sum_probs=35.7

Q ss_pred             hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002640           24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      ..+.|..|+|-+++|+++...||++||+|+-+||-.|-+
T Consensus        76 ~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~~  114 (115)
T PRK06369         76 PEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS  114 (115)
T ss_pred             CHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence            467889999999999999999999999999999988754

>TIGR00264 alpha-NAC-related protein

Probab=93.54  E-value=0.086  Score=51.27  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=35.1

Q ss_pred             hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002640           24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      ..+.|..|+|-+++|+++...||++||||+-+||-+|.+
T Consensus        78 ~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L~~  116 (116)
T TIGR00264        78 TEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMKLEE  116 (116)
T ss_pred             CHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHhhC
Confidence            357788899999999999999999999999999988753

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]

Probab=92.63  E-value=0.14  Score=50.21  Aligned_cols=39  Identities=23%  Similarity=0.240  Sum_probs=34.8

Q ss_pred             hHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002640           24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      .++-|+.+.|=++.|++|...||++||||+-+||-+|.+
T Consensus        84 ~eeDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L~~  122 (122)
T COG1308          84 SEEDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMKLTE  122 (122)
T ss_pred             CHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHhcC
Confidence            356788888889999999999999999999999999863

>PRK09377 tsf elongation factor Ts; Provisional

Probab=92.37  E-value=0.12  Score=57.04  Aligned_cols=38  Identities=21%  Similarity=0.238  Sum_probs=35.1

Q ss_pred             HHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002640           25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      -+.|+.|||.||..--||..||.+||+|.+.|++.|-+
T Consensus         6 ~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk   43 (290)
T PRK09377          6 AALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRK   43 (290)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            46799999999999999999999999999999998755

>CHL00098 tsf elongation factor Ts

Probab=91.81  E-value=0.13  Score=53.87  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=34.4

Q ss_pred             HHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002640           26 KIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        26 k~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      +.|+.|||.||..--||..||.+|++|.+.|++.|-+
T Consensus         3 ~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr~   39 (200)
T CHL00098          3 ELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQ   39 (200)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            5799999999999999999999999999999997754

>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin

Probab=91.77  E-value=0.24  Score=41.78  Aligned_cols=38  Identities=29%  Similarity=0.397  Sum_probs=31.4

Q ss_pred             HHHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002640           25 RKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        25 rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      ++.|.+...+. |++.+-|+.-|+-+|.|+|+||+-||+
T Consensus        10 edlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLs   48 (53)
T PF11547_consen   10 EDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLS   48 (53)
T ss_dssp             HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhc
Confidence            45566666677 999999999999999999999999997

Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=91.38  E-value=0.19  Score=57.14  Aligned_cols=41  Identities=20%  Similarity=0.350  Sum_probs=38.7

Q ss_pred             cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002640           22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ   63 (897)
Q Consensus        22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~~   63 (897)
                      ...+.+|+.|+|| ||.+++|..||+-+.++|++||+.||.|
T Consensus       154 ~~~e~~I~~i~eM-Gf~R~qV~~ALRAafNNPdRAVEYL~tG  194 (378)
T TIGR00601       154 SERETTIEEIMEM-GYEREEVERALRAAFNNPDRAVEYLLTG  194 (378)
T ss_pred             hHHHHHHHHHHHh-CCCHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence            3678999999999 9999999999999999999999999996

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00116 tsf translation elongation factor Ts

Probab=91.07  E-value=0.19  Score=55.46  Aligned_cols=37  Identities=24%  Similarity=0.287  Sum_probs=34.5

Q ss_pred             HHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002640           26 KIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        26 k~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      +.|+.|||.||..--||..||.||++|.+.||+.|=+
T Consensus         6 ~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LRk   42 (290)
T TIGR00116         6 QLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRE   42 (290)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            5799999999999999999999999999999997755

This protein is found in Bacteria, mitochondria, and chloroplasts.

>PRK12332 tsf elongation factor Ts; Reviewed

Probab=90.55  E-value=0.21  Score=52.28  Aligned_cols=37  Identities=27%  Similarity=0.311  Sum_probs=34.5

Q ss_pred             HHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002640           26 KIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        26 k~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      +.|+.|||.||..--||-.||.+|++|.+.|++.|-+
T Consensus         6 ~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~   42 (198)
T PRK12332          6 KLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLRE   42 (198)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            6799999999999999999999999999999997755

>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []

Probab=89.17  E-value=0.41  Score=38.74  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=31.5

Q ss_pred             HHHHhhhhcc-CCChHHHHHHHhhcCCCHHHHHHHhh
Q 002640           26 KIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLL   61 (897)
Q Consensus        26 k~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl   61 (897)
                      .-+..|..+| ......+=.+|+-|+||+-.||+.+|
T Consensus         3 ~pidiL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~l   39 (39)
T PF03474_consen    3 SPIDILTRVFPHQKRSVLELILQRCNGDVVQAIEQFL   39 (39)
T ss_pred             CHHHHHHHHCCCCChHHHHHHHHHcCCcHHHHHHHhC
Confidence            3467788899 88899999999999999999999765

DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.

>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins

Probab=88.94  E-value=0.15  Score=45.95  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=30.4

Q ss_pred             HHHHhhhhcc--CC-ChHHHHHHHhhcCCCHHHHHHHhhc
Q 002640           26 KIVQSLKEIV--NC-PESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        26 k~V~~ikEi~--~~-seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      .-+..||+++  .. ++.+|.-||-.|++|++.||..||+
T Consensus        30 ~~l~~vr~~Lg~~~~~e~~i~eal~~~~fDvekAl~~Ll~   69 (79)
T PF08938_consen   30 SCLPQVREVLGDYVPPEEQIKEALWHYYFDVEKALDYLLS   69 (79)
T ss_dssp             HHCCCHHHHCCCCC--CCHHHHHHHHTTT-CCHHHHHHHH
T ss_pred             HHHHHHHHHHcccCCCHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4456788888  35 8999999999999999999999987

; PDB: 1UFZ_A 3IZQ_1.

>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]

Probab=87.85  E-value=0.53  Score=52.14  Aligned_cols=37  Identities=24%  Similarity=0.277  Sum_probs=34.1

Q ss_pred             HHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhc
Q 002640           26 KIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        26 k~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      +.|+.|||.||..=-||..||.||+||.+.||+.|=+
T Consensus         7 ~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~   43 (296)
T COG0264           7 ALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLRE   43 (296)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            5789999999999999999999999999999997644

>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]

Probab=83.80  E-value=0.85  Score=51.07  Aligned_cols=42  Identities=24%  Similarity=0.277  Sum_probs=38.8

Q ss_pred             cchHHHHHhhhhccCCChHHHHHHHhhcCCCHHHHHHHhhcC
Q 002640           22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ   63 (897)
Q Consensus        22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~~   63 (897)
                      ++....|++|||-||.+-.+|.++|.|||+|+..|...|-+.
T Consensus        44 ~~~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~~L~k~   85 (340)
T KOG1071|consen   44 ASSKALLKKLREKTGASMVNCKKALEECGGDLVLAEEWLHKK   85 (340)
T ss_pred             cccHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            367899999999999999999999999999999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	897
d1wj7a1	91	a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-li	4e-04

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Length = 91

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLL----SQDPFHEVKSKRDKRKE 78
           + V+ L +I    + E    L +CN D N A+N LL        +  V  K+    +
Sbjct: 33 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQ 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	897
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	99.36
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	97.07
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	96.74
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	96.66
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	96.64
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	96.34
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	96.07
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	96.04
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.59
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	95.52
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	95.39
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	95.21
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	94.91
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	94.71
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	94.68
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	93.02
d1vdla_	80	Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (M	92.16
d2di0a1	63	Activating signal cointegrator 1 complex subunit 2	91.64
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	89.72
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	88.59
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	87.64
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	85.8

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=2.4e-13  Score=94.37  Aligned_cols=52  Identities=31%  Similarity=0.420  Sum_probs=48.4

Q ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC----CCCCCCCCC
Q ss_conf             5149988853301488757899997513999778998762599----744001110
Q 002640           22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQD----PFHEVKSKR   73 (897)
Q Consensus        22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~~~----~f~EVkkKr   73 (897)
                      ++++++|++|+|+++++++|++.||+|||+|++.||+.|||+.    .|+.++|||
T Consensus        30 ~~i~~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~lLEg~~~~~~Wet~~kKk   85 (91)
T d1wj7a1          30 ADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKK   85 (91)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSSCSSCSSCCCCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf             88999999999996788999999985178539999999995578877323202003

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00034  Score=40.36  Aligned_cols=44  Identities=18%  Similarity=0.289  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             7951499888533014-8875789999751399977899876259
Q 002640           20 IPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQ   63 (897)
Q Consensus        20 ip~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~~   63 (897)
                      -+...++.|+.||||| +--++-|..+|..|+|+++.||+.||+-
T Consensus         5 ~s~~~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~M   49 (59)
T d1wgla_           5 SSGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM   49 (59)
T ss_dssp             SSSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             576769999999998788779999999999399779999999855

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00044  Score=39.73  Aligned_cols=47  Identities=9%  Similarity=0.225  Sum_probs=40.5

Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             854579514998885330148875789999751399977899876259
Q 002640           16 GISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ   63 (897)
Q Consensus        16 ~~~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~~   63 (897)
                      ....++...++.|++|.+| +.+++.+..||+.|++|++.|++.|++.
T Consensus        11 ~~~~~~~~de~~v~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Lls~   57 (63)
T d1wgna_          11 ELQMLSPSERQCVETVVNM-GYSYECVLRAMKKKGENIEQILDYLFAH   57 (63)
T ss_dssp             HHHTCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             5445780249999999986-9989999999999099999999999928

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.66  E-value=0.0013  Score=36.97  Aligned_cols=41  Identities=27%  Similarity=0.311  Sum_probs=37.9

Q ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             514998885330148875789999751399977899876259
Q 002640           22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ   63 (897)
Q Consensus        22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~~   63 (897)
                      ...++.|++|+|| +.+++.+..||+.|++|++.||+.||+.
T Consensus        27 ~~~ee~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Ll~~   67 (73)
T d1vg5a_          27 AASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMSQ   67 (73)
T ss_dssp             CCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHH-CCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             7689999999995-8999999999999189999999999827

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00076  Score=38.32  Aligned_cols=40  Identities=18%  Similarity=0.340  Sum_probs=37.3

Q ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf             51499888533014887578999975139997789987625
Q 002640           22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      ..+++.|++|.|| |++++.+..||+.|+++++.|++-|++
T Consensus         2 ~~~e~~i~~L~~M-GF~~~~a~~AL~~~~~N~e~A~~~LlS   41 (41)
T d1oqya1           2 SEYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT   41 (41)
T ss_dssp             TTHHHHHHHHHTT-TCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred             HHHHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             2689999999985-998999999999858999999998729

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=96.34  E-value=0.0017  Score=36.31  Aligned_cols=40  Identities=18%  Similarity=0.225  Sum_probs=36.5

Q ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf             1499888533014887578999975139997789987625
Q 002640           23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      ..-+.|+.|+|.++..--||-.||.||+||.+.|++.|-+
T Consensus         3 ~s~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~Lrk   42 (56)
T d1xb2b1           3 SSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHK   42 (56)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             4499999999986988999999999838999999999999

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.07  E-value=0.0028  Score=35.01  Aligned_cols=38  Identities=18%  Similarity=0.310  Sum_probs=34.8

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf             99888533014887578999975139997789987625
Q 002640           25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      -+.|+.|+|.++..=.||-.||.||+||.+.|++.|-+
T Consensus         3 ~elvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~Lr~   40 (52)
T d1aipc1           3 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRE   40 (52)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             88999999986987999999999839999999999999

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0029  Score=34.86  Aligned_cols=38  Identities=21%  Similarity=0.227  Sum_probs=34.8

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf             99888533014887578999975139997789987625
Q 002640           25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        25 rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      -+.|+.|+|.++..-.||-.||.||+||.+.|++.|-+
T Consensus         5 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~Lr~   42 (54)
T d1efub3           5 ASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRK   42 (54)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99999999986987999999999838999999999999

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0078  Score=32.35  Aligned_cols=41  Identities=15%  Similarity=0.111  Sum_probs=34.6

Q ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             14998885330148875789999751399977899876259
Q 002640           23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ   63 (897)
Q Consensus        23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~~   63 (897)
                      .++.-+.+|+||==..++.++.||..|+||++.||++||.+
T Consensus         4 ry~~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~g   44 (44)
T d2bwba1           4 RYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG   44 (44)
T ss_dssp             HTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf             89999999999499968999999999499899999998676

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.52  E-value=0.0071  Score=32.58  Aligned_cols=40  Identities=18%  Similarity=0.168  Sum_probs=36.6

Q ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             14998885330148875789999751399977899876259
Q 002640           23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ   63 (897)
Q Consensus        23 ~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~~   63 (897)
                      -.++.|++|.|| |.+++.+..||+.|+++++.||+-|++.
T Consensus        28 ~d~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~Av~~Lls~   67 (73)
T d1wiva_          28 IDQSSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFNN   67 (73)
T ss_dssp             SCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf             899999999936-9999999999999299999999999818

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.39  E-value=0.0088  Score=32.04  Aligned_cols=40  Identities=18%  Similarity=0.215  Sum_probs=34.3

Q ss_pred             CCHHHHHHHHHHCCCCC-HHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf             51499888533014887-578999975139997789987625
Q 002640           22 AGSRKIVQSLKEIVNCP-ESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        22 ~~~rk~V~~ikEi~~~s-eedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      .-++.-+.+|+|| |.+ ++.++.||..|+||++.||++||.
T Consensus        20 ~ry~~QL~qL~eM-GF~d~~~Nl~AL~~t~Gdv~~Aie~Ll~   60 (61)
T d1veja1          20 GRYQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG   60 (61)
T ss_dssp             TTSHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf             9999999999993-8997899999999918989999999865

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.011  Score=31.54  Aligned_cols=39  Identities=18%  Similarity=0.262  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             4998885330148875789999751399977899876259
Q 002640           24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ   63 (897)
Q Consensus        24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~~   63 (897)
                      -++.|++|.+| +++++.+..||+.|++|++.||+-|++.
T Consensus         9 d~~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~~wL~~~   47 (63)
T d1wjia_           9 DEKALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLTS   47 (63)
T ss_dssp             CHHHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             99999999996-9999999999999198999999999978

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.012  Score=31.23  Aligned_cols=39  Identities=15%  Similarity=0.097  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf             499888533014887578999975139997789987625
Q 002640           24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        24 ~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      ++..+.+|+||==..++.++.||..|+||++.||++|+.
T Consensus         2 y~~QL~~L~~MGF~d~~~Ni~AL~~t~Gdv~~Aie~Ll~   40 (41)
T d2daha1           2 FQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ   40 (41)
T ss_dssp             SHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             689999999859997899999999839989999999975

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.71  E-value=0.015  Score=30.60  Aligned_cols=41  Identities=17%  Similarity=0.186  Sum_probs=37.1

Q ss_pred             CCHHHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf             51499888533014-887578999975139997789987625
Q 002640           22 AGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        22 ~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      ..+++.++.||||| +--.+=|-..|..|+|+++.||+.||+
T Consensus        10 ~e~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~   51 (54)
T d1mn3a_          10 NERKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLS   51 (54)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             999999999998879997999999999929977999999871

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.68  E-value=0.022  Score=29.70  Aligned_cols=42  Identities=19%  Similarity=0.121  Sum_probs=35.4

Q ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             514998885330148875789999751399977899876259
Q 002640           22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ   63 (897)
Q Consensus        22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~~   63 (897)
                      ..++.-+.+|+||==..++.++.||..|+||++.||++|++.
T Consensus         6 ~ry~~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~   47 (50)
T d2dnaa1           6 VRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS   47 (50)
T ss_dssp             HHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             999999999999499979999999999399899999999865

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=93.02  E-value=0.064  Score=26.93  Aligned_cols=36  Identities=33%  Similarity=0.456  Sum_probs=30.3

Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             8885330148875789999751399977899876259
Q 002640           27 IVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ   63 (897)
Q Consensus        27 ~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~~   63 (897)
                      -|+.|.+| +.+|++-..||+.||.|++.|++-||++
T Consensus         7 ai~eL~~M-GF~e~~A~~AL~k~~wnleaAtN~LLd~   42 (43)
T d2g3qa1           7 AVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLDS   42 (43)
T ss_dssp             HHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             HHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             99999955-8788999999998589799999998705

>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin carboxyl-terminal hydrolase 25
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.16  E-value=0.08  Score=26.37  Aligned_cols=42  Identities=24%  Similarity=0.326  Sum_probs=36.1

Q ss_pred             CCHHHHHHHHHHCCCCCHHHHH-HHHHHCCCCHHHHHHHHHCC
Q ss_conf             5149988853301488757899-99751399977899876259
Q 002640           22 AGSRKIVQSLKEIVNCPESEIY-AMLKECNMDPNEAVNRLLSQ   63 (897)
Q Consensus        22 ~~~rk~V~~ikEi~~~seedi~-~aL~ecn~D~n~Av~rLl~~   63 (897)
                      ..-...+.+||||++-.|..++ .||+..+||+.+||-.|.++
T Consensus        22 ~hqQ~lLNQLrEITGIqD~q~L~~ALkas~Gdl~~AV~~LT~~   64 (80)
T d1vdla_          22 KHQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK   64 (80)
T ss_dssp             SCHHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf             4899999999997377859999999980378899999998627

>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Activating signal cointegrator 1 complex subunit 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.12  Score=25.28  Aligned_cols=43  Identities=21%  Similarity=0.419  Sum_probs=40.0

Q ss_pred             CCHHHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             51499888533014-88757899997513999778998762599
Q 002640           22 AGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQD   64 (897)
Q Consensus        22 ~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~~~   64 (897)
                      +..+.+|.+||++| +-.+.=|.+.|..-++|++..|+.||+.+
T Consensus         4 vel~s~I~qV~Dl~PdLG~GFi~~~L~~Y~~n~E~vI~~lLe~~   47 (63)
T d2di0a1           4 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER   47 (63)
T ss_dssp             HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf             68999999999985877579999999996899999999998467

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=0.16  Score=24.58  Aligned_cols=41  Identities=15%  Similarity=0.155  Sum_probs=35.6

Q ss_pred             CCCHHHHHHHHHHCCCCCHHHHHHHHHHCCC-CHHHHHHHHHC
Q ss_conf             9514998885330148875789999751399-97789987625
Q 002640           21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNM-DPNEAVNRLLS   62 (897)
Q Consensus        21 p~~~rk~V~~ikEi~~~seedi~~aL~ecn~-D~n~Av~rLl~   62 (897)
                      +......|++|.|| |.+++.+..||..|++ |++.|++-|++
T Consensus         9 ~~~~~~~l~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~~WLl~   50 (51)
T d2cpwa1           9 TIKHGSALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFS   50 (51)
T ss_dssp             SSSCCCHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf             89899999999995-9999999999999779999999999973

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.59  E-value=0.17  Score=24.50  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=33.9

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCC-CHHHHHHHHHC
Q ss_conf             998885330148875789999751399-97789987625
Q 002640           25 RKIVQSLKEIVNCPESEIYAMLKECNM-DPNEAVNRLLS   62 (897)
Q Consensus        25 rk~V~~ikEi~~~seedi~~aL~ecn~-D~n~Av~rLl~   62 (897)
                      ++.|++|.|| +.+++.+..||+.|++ +++.|++-|++
T Consensus        10 ~~~l~~L~~M-GF~~~~a~~AL~~t~n~~~e~A~~Wl~~   47 (64)
T d1whca_          10 LTALESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLME   47 (64)
T ss_dssp             CCHHHHHHTT-TCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999995-9999999999999489999999999998

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.64  E-value=0.32  Score=22.84  Aligned_cols=41  Identities=10%  Similarity=0.167  Sum_probs=36.9

Q ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf             51499888533014887578999975139997789987625
Q 002640           22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS   62 (897)
Q Consensus        22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~   62 (897)
                      .+.++.|.+..+|++.+++.-.+-|.-|+.|++.||+.-.+
T Consensus         3 ~~~~~lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~~yfe   43 (46)
T d1v92a_           3 EERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE   43 (46)
T ss_dssp             THHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             63999999999998959999999999959969999999986

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.80  E-value=0.77  Score=20.57  Aligned_cols=44  Identities=27%  Similarity=0.309  Sum_probs=37.1

Q ss_pred             CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH-CCCCHHHHHHHHHC
Q ss_conf             4579514998885330148875789999751-39997789987625
Q 002640           18 SSIPAGSRKIVQSLKEIVNCPESEIYAMLKE-CNMDPNEAVNRLLS   62 (897)
Q Consensus        18 ~~ip~~~rk~V~~ikEi~~~seedi~~aL~e-cn~D~n~Av~rLl~   62 (897)
                      ...|.--++.|++|.+| +.++..+..||+. ||++++.|++-|++
T Consensus        23 ~~~p~~d~~~v~~L~~M-GF~~~~a~~AL~~t~n~~~e~A~~Wl~~   67 (84)
T d1veka_          23 SAQPVANEEIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLS   67 (84)
T ss_dssp             SCCCCCCHHHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             68898999999999995-9999999999999769999999999998