Citrus Sinensis ID: 002653

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890------
MAVKLHNHHSLVSSRSSNPWFSRNSVKSHICCRRVVALDCGNSTKRYLLRIAMLENGKNNQLVSYWKNFGNFCKSRRNGHLLLHASSDDGVTVNGSPQASTSSDVEEMRVKLNQSLQGNDYNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQAACEISSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRFTAATAVSGKGMSLGSGSSSDTSLLMLALTCIAAITKLGPAKVSCSQFSSMISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEVIFWVDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVDDPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGSTGMPKQSHGHKSKREDPPNAEAIPQVLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKAASLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGLFGFFTRPSIRKPKPQESEYCEQTGSNIGIANSESNEIHRFELLRNELMELEKRVQRSADQSENGEDIKVMDERANFSESRGTQLVQVQKTENIIGKSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVPGLIPSTYGPERLDLLRQLEKVKEMESSEVDPDENAGLDPDELT
ccccccccccccccccccccccccccccEEEEEEEEccccccccHHHHHHHHHHHccccccEEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHcccccccHHHHccccHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccHHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcEEEEcEEHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccc
ccEEEcccccccccccccccccccccEEEEEEEEEEEccccccccHHHHHHHHccccccccEEEEEcccccccccccccEEEEcccccccEEEccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHcccccEEEEHEEcccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHccEEEEcccHccHHHHHEHHHHHHHHHccccccccccccccHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEcccccccccccccccccccccccccEEEEEccccccccccHHcHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHEEEccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccHHcccccccccc
mavklhnhhslvssrssnpwfsrnsvkshiccrrvvaldcgnstKRYLLRIAMLENGKNNQLVSYWKNFGNfcksrrnghlllhassddgvtvngspqastssdVEEMRVKLNQslqgndyndglVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQAACEisscgdgrdrdVYVFVQRSLLRQSAPLESLIRDKLSaklpegyewfwseqvPAVVTSFINYFERDQRFTAatavsgkgmslgsgsssdtSLLMLALTCIAAITklgpakvscSQFSSMISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLahfgprasacrvkndrdseEVIFWVDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGrstqsflsrngfdvvddpIKSLIRYLIGGsvlyypqlssissYQLYVEVVCEELDWllfypgstgmpkqshghkskredppnaeaipQVLDVCSHWMQSFIKhskwlenpsnvkAAKFLSKGYDKLMDCMKEMGIARNGMIEsaesvtysrteidsdSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKAASlqqggddsdsgssigekqwylkgskSRIAdvvqdrpnevvcksrglfgfftrpsirkpkpqeseyceqtgsnigiansesneIHRFELLRNELMELEKRVQRsadqsengedikvmderanfsesrgtQLVQVQKTENIIGKSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYvpglipstygpeRLDLLRQLEKVKemessevdpdenagldpdelt
mavklhnhhslvssrssnpwfsrnsvKSHICCRRVVALDCGNSTKRYLLRIAMLENGKNNQLVSYWKNFGNFCKSRRNGHLLLhassddgvtvngspqastssdveEMRVKLNQSLQGNDYNDGLVQSLHDAARVFELAIkekgsvsklswlSTAWLGVDRNAWIKTLSYQASAYSLLQAACEISSCGDGRDRDVYVFVQRSllrqsaplesliRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRFTAAtavsgkgmslgsGSSSDTSLLMLALTCIAAITKLGPAKVSCSQFSSMISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEVIFWVDLVQKQLQraidrekiwsrlttsesiEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVDDPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGSTGMPKQSHghkskredppnaEAIPQVLDVCSHWMQSFIKhskwlenpsnVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALhvsssnsgkeqLKAACSDLEKIRKLKKEAEFLEASVRAKAAslqqggddsdsgssiGEKQWYLKGSksriadvvqdrpnevvcksrglfgfftrpsirkpkpqeseyCEQTgsnigiansesnEIHRFELLRNELMELEKRVqrsadqsengedikvmderanfsesrgtqlvqvqkteniIGKSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVPGLIPSTYGPERLDLLRQLEKVKemessevdpdenagldpdelt
MAVKLHNHHSLVSSRSSNPWFSRNSVKSHICCRRVVALDCGNSTKRYLLRIAMLENGKNNQLVSYWKNFGNFCKSRRNGHLLLHASSDDGVTVNGSPQASTSSDVEEMRVKLNQSLQGNDYNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQAACEISSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRFTAATAVsgkgmslgsgsssdtsllmlALTCIAAITKLGPAKVSCSQFSSMISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEVIFWVDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVDDPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGSTGMPKQSHGHKSKREDPPNAEAIPQVLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKAASLQQggddsdsgssIGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGLFGFFTRPSIRKPKPQESEYCEQTGSNIGIANSESNEIHRFELLRNELMELEKRVQRSADQSENGEDIKVMDERANFSESRGTQLVQVQKTENIIGKSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVPGLIPSTYGPERLDLLRQLEKVKEMESSEVDPDENAGLDPDELT
*******************WFSRNSVKSHICCRRVVALDCGNSTKRYLLRIAMLENGKNNQLVSYWKNFGNFCKSRRNGHLLLH************************************YNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQAACEISSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRFTAATAV***************SLLMLALTCIAAITKLGPAKVSCSQFSSMISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEVIFWVDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVDDPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYP************************IPQVLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMI************************VEEALIRLEKLLQAL************************************************************WYLKGSKSRIADVVQDRPNEVVCKSRGLFGFFTR***********************************************************************************TENIIGKSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVPGLIPSTYGPERLDLL****************************
**********************RNSVKSHICCRRVVALDCGNSTKRYLLRIAMLENGKNNQLVSYWKNFGNF*************************************VKLNQSLQGNDYNDGLVQSLHDAARVFEL************WLSTAWLGVDRNAWIKTLSYQASAYSLLQAACEISSCGDGRDRDVYVFVQRSLL*****************LPEGYEWFWSEQVPAVVTSFINYFERDQRFTAATAVS***********SDTSLLMLALTCIAAITKLGPAKVSCSQFSSMISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEVIFWVDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVDDPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGST*********************IPQVLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMI**********************ESVEEALIR*************************************************************************************************************************************************************************************************IDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVPGLIP***************************************
*******************WFSRNSVKSHICCRRVVALDCGNSTKRYLLRIAMLENGKNNQLVSYWKNFGNFCKSRRNGHLLLHASSDD*****************EMRVKLNQSLQGNDYNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQAACEISSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRFTAATAV*************DTSLLMLALTCIAAITKLGPAKVSCSQFSSMISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEVIFWVDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVDDPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGSTG****************NAEAIPQVLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALHV***********AACSDLEKIRKLKKEAEFLEASVRA*****************IGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGLFGFFTRPSIRK*********EQTGSNIGIANSESNEIHRFELLRNELMELEK***********GEDIKVMDERANFSESRGTQLVQVQKTENIIGKSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVPGLIPSTYGPERLDLLRQLEKV**********************
*********SLVSSRSSNPWFSRNSVKSHICCRRVVALDCGNSTKRYLLRIAMLENGKNNQLVSYWKNFGNFCKSRRNGHLLLHASSDDGVTVNGS****TSSDVEEMRVKLNQSLQGNDYNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQAACEISSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRFTAATAVSGKGMSLGSGSSSDTSLLMLALTCIAAITKLGPAKVSCSQFSSMISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEVIFWVDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVDDPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGSTG************EDPPNAEAIPQVLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARN*****************SDSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKAAS******************************************SRGLFGFFTRPSIRKPKPQ****CEQTGSNIGIANSESNEIHRFELLRNELMELEKRVQRSADQSENGEDIKVMDER*N*SESRGTQLVQVQKTENIIGKSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVPGLIPSTYGPERLDLLRQLEKVKEME******************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAVKLHNHHSLVSSRSSNPWFSRNSVKSHICCRRVVALDCGNSTKRYLLRIAMLENGKNNQLVSYWKNFGNFCKSRRNGHLLLHASSDDGVTVNGSPQASTSSDVEEMRVKLNQSLQGNDYNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQAACEISSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRFTAATAVSGKGMSLGSGSSSDTSLLMLALTCIAAITKLGPAKVSCSQFSSMISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEVIFWVDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVDDPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGSTGMPKQSHGHKSKREDPPNAEAIPQVLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSxxxxxxxxxxxxxxxxxxxxxxxxxSSNSGKEQLKAACSDLEKxxxxxxxxxxxxxxxxxxxxxLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGLFGFFTRPSIRKPKPQESEYCEQTGSNIGIANSESNEIHRxxxxxxxxxxxxxxxxxxxxxSENGEDIKVMDERANFSESRGTQLVQVQKTENIIGKSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVPGLIPSTYGPERLDLLRQLEKVKEMESSEVDPDENAGLDPDELT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query896 2.2.26 [Sep-21-2011]
P91927 1013 LETM1 and EF-hand domain- yes no 0.095 0.084 0.347 3e-08
Q06493 454 LETM1 domain-containing p yes no 0.133 0.264 0.244 5e-06
Q08179 573 Mitochondrial distributio no no 0.094 0.148 0.280 0.0001
>sp|P91927|A60DA_DROME LETM1 and EF-hand domain-containing protein anon-60Da, mitochondrial OS=Drosophila melanogaster GN=Letm1 PE=2 SV=2 Back     alignment and function desciption
 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 6/92 (6%)

Query: 781 WQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVG 840
           + G +LL +DV    +LL R L G  LT++E + LQRT +DL  ++P  V +++P   + 
Sbjct: 193 YHGFRLLFIDVAICSKLLWRVLNGKTLTRRENKQLQRTTSDLFRLIPFSVFIIVPFMEL- 251

Query: 841 HAAMLAAIQRYVPGLIPSTY--GPERLDLLRQ 870
              +L    ++ PG++PST+    +R + LRQ
Sbjct: 252 ---LLPLFIKFFPGMLPSTFQTSTDRQEKLRQ 280

Drosophila melanogaster (taxid: 7227)
>sp|Q06493|YLH47_YEAST LETM1 domain-containing protein YLH47, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLH47 PE=1 SV=1 Back     alignment and function description
>sp|Q08179|MDM38_YEAST Mitochondrial distribution and morphology protein 38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDM38 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query896
297740159910 unnamed protein product [Vitis vinifera] 0.986 0.971 0.722 0.0
359482024911 PREDICTED: uncharacterized protein LOC10 0.974 0.958 0.720 0.0
255579361842 conserved hypothetical protein [Ricinus 0.935 0.995 0.725 0.0
224140065827 predicted protein [Populus trichocarpa] 0.911 0.987 0.709 0.0
449451167905 PREDICTED: uncharacterized protein LOC10 0.979 0.970 0.660 0.0
224091947866 predicted protein [Populus trichocarpa] 0.925 0.957 0.680 0.0
356537118982 PREDICTED: uncharacterized protein LOC10 0.912 0.832 0.674 0.0
356498737847 PREDICTED: uncharacterized protein LOC10 0.915 0.968 0.675 0.0
30681773872 LETM1-like protein [Arabidopsis thaliana 0.953 0.979 0.615 0.0
297829710876 hypothetical protein ARALYDRAFT_478500 [ 0.947 0.969 0.611 0.0
>gi|297740159|emb|CBI30341.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1283 bits (3321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/908 (72%), Positives = 737/908 (81%), Gaps = 24/908 (2%)

Query: 1   MAVKLHNHHSLVSSRSSNPWFSRNSVKSHICCRRVVALD--CGNSTKRYLLRIAMLENGK 58
           MAVKLH H S  SS S+NPW  R   ++   C++V  L+    NS +R  +R AMLEN  
Sbjct: 1   MAVKLH-HQSFASSSSTNPWLLRKPKRAIFFCKKVADLEHLWSNSRRRCFMRHAMLENDN 59

Query: 59  N---NQLVSYWKNFGNFCKSRRNGHLLLHASSDDGVTVNGSPQASTSSDVEEMRVKLNQS 115
               +QL  +      F KSRR G+L   AS+DDGVTVNGSPQASTSSD EEMRVKLNQS
Sbjct: 60  QSFRHQLGQFRILRPTFPKSRRMGNLFPLASADDGVTVNGSPQASTSSDFEEMRVKLNQS 119

Query: 116 LQGNDYNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAY 175
           LQG DYN GLVQSLHDAARVFELAIKE+  +SK+SWLSTAWLGVD+NAW+K LSYQAS Y
Sbjct: 120 LQGEDYN-GLVQSLHDAARVFELAIKEESLLSKISWLSTAWLGVDQNAWLKALSYQASVY 178

Query: 176 SLLQAACEISSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVP 235
           SLLQAA EISS GDGRDRD+ VFVQRSLL  SAPLES+IRD+LSAK PE  EWFWSEQV 
Sbjct: 179 SLLQAATEISSRGDGRDRDINVFVQRSLLCISAPLESIIRDQLSAKQPEINEWFWSEQVQ 238

Query: 236 AVVTSFINYFERDQRFTAATAVSGKGMSLGSGSSSDTSLLMLALTCIAAITKLGPAKVSC 295
             V SF+NYFERD RFTAAT+VS KGMSLGSG++SD SLLMLALTCI AI  LG AK+SC
Sbjct: 239 LAVRSFVNYFERDPRFTAATSVSIKGMSLGSGNASDISLLMLALTCIEAIMNLGQAKISC 298

Query: 296 SQFSSMISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSE 355
           SQF SMI DITGRLMD LVD +PI QAY+SIKDIGL REFL HFGPRA+ACRVKN R +E
Sbjct: 299 SQFFSMIPDITGRLMDMLVDFIPIHQAYHSIKDIGLQREFLVHFGPRAAACRVKNARGTE 358

Query: 356 EVIFWVDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNG 415
           EV+FWVDL+QKQLQRAIDRE+IWS+LTTSESIEVLERDLAIFGFFIALGRSTQSFLS NG
Sbjct: 359 EVVFWVDLIQKQLQRAIDRERIWSKLTTSESIEVLERDLAIFGFFIALGRSTQSFLSANG 418

Query: 416 FDVVDDPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGSTGMPKQSH 475
           +DV+DDPI+  IRYLIGGSVL YPQLSSISSYQLYVEVVCEELDW+ FYPG+ G  KQ+H
Sbjct: 419 YDVIDDPIEGFIRYLIGGSVLCYPQLSSISSYQLYVEVVCEELDWIPFYPGNIGNLKQAH 478

Query: 476 GHKSKREDPPNAEAIPQVLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMK 535
           GHKSK+ DPPNAEAIPQV+DVCS+WMQSFIK+SKWLENPSNVKAA+FLSKG+ +L++CM+
Sbjct: 479 GHKSKK-DPPNAEAIPQVIDVCSYWMQSFIKYSKWLENPSNVKAARFLSKGHKRLIECME 537

Query: 536 EMGIARNGM--------IESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALHVS 587
           E+GI +N M        +E  +S TYS  E + DSFDKALESV+EALIRLEKLLQ  HVS
Sbjct: 538 ELGIPKNKMMEIKNKNLVERTDSGTYSPIEKEPDSFDKALESVDEALIRLEKLLQEQHVS 597

Query: 588 SSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKAASLQQGGDDSDSGSSIGEKQWYL 647
            SNSGKE LKAACSDLE+IRKLKKEAEFLE S RAKAASLQQGGDD  S SSI E+  YL
Sbjct: 598 KSNSGKEHLKAACSDLERIRKLKKEAEFLEVSFRAKAASLQQGGDDGHSQSSISEQGPYL 657

Query: 648 KGSKSRIADVVQDRPNEVVCKSRGLFGFFTRPSIRKPKP-------QESEYCEQTGSNIG 700
           KG   + A+V+ DR N      RGL+ F    S RKP P        ESE  EQT +++ 
Sbjct: 658 KGKNRKSANVMLDRANRGASNPRGLWSFLLSRSTRKPDPGSSSMDRAESEPFEQTTASVS 717

Query: 701 IANSESNEIHRFELLRNELMELEKRVQRSADQSENGEDIKVMDERANFSESRG-TQLVQV 759
           +A SESNEI RFELLR EL+ELEKRVQRS DQSEN ED+KV  + A + +  G TQLVQV
Sbjct: 718 VAESESNEIQRFELLRKELIELEKRVQRSTDQSENEEDVKVTVDNATYRDEDGVTQLVQV 777

Query: 760 QKTENIIGKSIDKLKETSMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTL 819
           QK ENII KS DKLKE S DVWQGTQLLA+DV AA  L+RR L+GDELT+KEK+ALQRTL
Sbjct: 778 QKKENIIEKSFDKLKEASTDVWQGTQLLAIDVAAATGLIRRVLIGDELTEKEKKALQRTL 837

Query: 820 TDLASVVPIGVLMLLPVTAVGHAAMLAAIQRYVPGLIPSTYGPERLDLLRQLEKVKEMES 879
           TDLASVVPIGVLMLLPVTAVGHAA+LAAIQRYVP LIPSTYGPERLDLLRQLEK+KEME+
Sbjct: 838 TDLASVVPIGVLMLLPVTAVGHAAILAAIQRYVPALIPSTYGPERLDLLRQLEKMKEMET 897

Query: 880 SEVDPDEN 887
           SE++ +EN
Sbjct: 898 SELNTEEN 905

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359482024|ref|XP_002276024.2| PREDICTED: uncharacterized protein LOC100257992 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255579361|ref|XP_002530525.1| conserved hypothetical protein [Ricinus communis] gi|223529929|gb|EEF31857.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224140065|ref|XP_002323407.1| predicted protein [Populus trichocarpa] gi|222868037|gb|EEF05168.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449451167|ref|XP_004143333.1| PREDICTED: uncharacterized protein LOC101216170 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224091947|ref|XP_002309411.1| predicted protein [Populus trichocarpa] gi|222855387|gb|EEE92934.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356537118|ref|XP_003537077.1| PREDICTED: uncharacterized protein LOC100793363 [Glycine max] Back     alignment and taxonomy information
>gi|356498737|ref|XP_003518206.1| PREDICTED: uncharacterized protein LOC100775395 [Glycine max] Back     alignment and taxonomy information
>gi|30681773|ref|NP_851000.1| LETM1-like protein [Arabidopsis thaliana] gi|30681776|ref|NP_187763.3| LETM1-like protein [Arabidopsis thaliana] gi|145332028|ref|NP_001078136.1| LETM1-like protein [Arabidopsis thaliana] gi|25082863|gb|AAN72009.1| Unknown protein [Arabidopsis thaliana] gi|222423563|dbj|BAH19751.1| AT3G11560 [Arabidopsis thaliana] gi|332641542|gb|AEE75063.1| LETM1-like protein [Arabidopsis thaliana] gi|332641544|gb|AEE75065.1| LETM1-like protein [Arabidopsis thaliana] gi|332641545|gb|AEE75066.1| LETM1-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297829710|ref|XP_002882737.1| hypothetical protein ARALYDRAFT_478500 [Arabidopsis lyrata subsp. lyrata] gi|297328577|gb|EFH58996.1| hypothetical protein ARALYDRAFT_478500 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query896
TAIR|locus:2080752872 AT3G11560 [Arabidopsis thalian 0.960 0.987 0.596 4.2e-269
CGD|CAL0004088 508 MRS7 [Candida albicans (taxid: 0.180 0.318 0.291 1.4e-10
UNIPROTKB|Q5A913 508 CaO19.3321 "Putative uncharact 0.180 0.318 0.291 1.4e-10
DICTYBASE|DDB_G0278471 527 DDB_G0278471 "LETM1 and EF-han 0.178 0.303 0.276 6e-07
POMBASE|SPAC23C11.17 485 mdm28 "mitochondrial inner mem 0.107 0.197 0.323 9.3e-06
FB|FBgn0019886 1013 Letm1 "Letm1" [Drosophila mela 0.171 0.152 0.274 1.1e-05
ASPGD|ASPL0000036838 543 AN2939 [Emericella nidulans (t 0.136 0.224 0.298 1.2e-05
SGD|S000006329 454 YLH47 "Mitochondrial inner mem 0.157 0.310 0.226 1.2e-05
TAIR|locus:2034136 736 LETM2 "leucine zipper-EF-hand- 0.117 0.142 0.283 5.3e-05
WB|WBGene00010279 784 letm-1 [Caenorhabditis elegans 0.206 0.235 0.223 0.00054
TAIR|locus:2080752 AT3G11560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2588 (916.1 bits), Expect = 4.2e-269, P = 4.2e-269
 Identities = 531/890 (59%), Positives = 660/890 (74%)

Query:     1 MAVKLHNHHSLVSSRSSNPWFSRNSVKSHICCRRVVALDCGNSTKRYLLRIAMLENGKNN 60
             MA +L     + SS +S P   R S+ + I C+R V L+       YL     L N ++ 
Sbjct:     1 MAARLQRPGLVSSSSTSKPCLPRMSIVTFISCKRTVHLE-------YLSNC--LSNPRSQ 51

Query:    61 QLVSYWKNFGNFCKSRRNGHLLLHASSDDGVTVNGSPQASTSSDVEEMRVKLNQSLQGND 120
               V Y   F      +++  L+L AS++DGV +NGSPQ  +SS++E+MR     SLQ  +
Sbjct:    52 LFVRY--GFLERSNKKKSQRLVL-ASAEDGVAINGSPQPRSSSNLEDMRTSFTGSLQDEN 108

Query:   121 YNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQA 180
              ++GL QSLHDAAR  ELA+KEK + S+ SW  + WLG D+ AW+KTLSYQAS YSLLQA
Sbjct:   109 NSNGLNQSLHDAARSIELAVKEKITPSRFSWFPSTWLGADKYAWVKTLSYQASLYSLLQA 168

Query:   181 ACEISSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTS 240
               EISS G+ RD D+ VFVQRSL RQ+APLE+++R+ LS+K P+ YEWFWSEQVP+VVTS
Sbjct:   169 VNEISSRGNYRDEDINVFVQRSLSRQAAPLENMMRENLSSKHPKAYEWFWSEQVPSVVTS 228

Query:   241 FINYFERDQRFTAATAVXXXXXXXXXXXXXXXXXXXXALTCIAAITKLGPAKVSCSQFSS 300
             F+NY E DQRF AAT+V                     L CIAAITK+GPAK SC  F S
Sbjct:   229 FVNYLEGDQRFVAATSVYAKGKSAAASNEIEVSLLMLVLNCIAAITKVGPAKFSCPPFFS 288

Query:   301 MISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEVIFW 360
             MI D TGRLM+ LVD VP+ QAY+SIK IGL REFL HFGPRA+ CRV  D D++EVIFW
Sbjct:   289 MIPDTTGRLMEKLVDFVPLPQAYHSIKSIGLQREFLTHFGPRAAVCRVNGDIDTDEVIFW 348

Query:   361 VDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVD 420
             VDL+QKQLQRAIDREKIWS+LTTSESIEVLERDLAIFGFFIALGRSTQS L+ NGFD ++
Sbjct:   349 VDLIQKQLQRAIDREKIWSKLTTSESIEVLERDLAIFGFFIALGRSTQSILAANGFDSLE 408

Query:   421 DPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGSTGM--PKQSHGHK 478
             +P++ L+R+LIGGSVLYYPQLS+ISSYQLYVEVVCEEL+W+ FYP +TG   P QSHGHK
Sbjct:   409 NPLEDLVRHLIGGSVLYYPQLSAISSYQLYVEVVCEELEWIPFYPNNTGTQPPNQSHGHK 468

Query:   479 SKREDPPNAEAIPQVLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMG 538
             +K E PPN E IPQ+LDVCS+W+QSFIK+SKW ENPSNVKAAKFLSKG+  L+ C +E+G
Sbjct:   469 TKPEGPPNYEVIPQLLDVCSYWLQSFIKYSKWPENPSNVKAAKFLSKGHKTLVRCKEELG 528

Query:   539 IARNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKA 598
             I +N     A S+       +S+SFDKALESV+EAL+RLE LLQ L+VS+S+SGKEQ+KA
Sbjct:   529 ILKN-----ASSIVR-----ESNSFDKALESVDEALVRLESLLQELYVSNSSSGKEQIKA 578

Query:   599 ACSDLEKIRKLKKEAEFLEASVRAKAASLQQXXXXXXXXXXIGEKQWYLKGSKSRIADVV 658
             ACSDLEKIRKLKKEAEFLEA+ RAKAASLQQ             ++ Y KG  ++ A+  
Sbjct:   579 ACSDLEKIRKLKKEAEFLEATFRAKAASLQQGGDKNDSQESYEVQKRYFKGKDTKNANSS 638

Query:   659 QDRPNEVVCKSRGLFGFFTRPSIRKPKPQES--EYCEQTGSNIGIANSESNEIHRFELLR 716
             +D+   +   SRG +GFF RPS +K  P+ S  EY  ++  N+   +SE  EI RFE+LR
Sbjct:   639 EDQGKSI---SRGFWGFFVRPSRKKLDPELSGDEYIGKSSGNLLSIDSEPIEISRFEILR 695

Query:   717 NELMELEKRVQRSADQSENGEDIKVMDERANFSESRGTQLVQVQKTENIIGKSIDKLKET 776
             NEL+ELEKRV+RS DQS + E++   D   + S +   QLVQ  K EN++ K++ KL+E 
Sbjct:   696 NELIELEKRVKRSTDQSVDEEELISEDTPQSSSRTESVQLVQTPKKENMMEKTLQKLREA 755

Query:   777 SMDVWQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPV 836
             + DVWQGTQLLA+D  AA++LLRR+L+GDELT KEK+AL+RT+TDLASV+PIG+LMLLPV
Sbjct:   756 TTDVWQGTQLLAIDSAAAVQLLRRSLIGDELTGKEKKALRRTMTDLASVIPIGILMLLPV 815

Query:   837 TAVGHAAMLAAIQRYVPGLIPSTYGPERLDLLRQLEKVKEMESSEVDPDE 886
             TAVGHAAMLA IQRYVPGLIPSTYG ERL+LLRQLEK+KE++++E + +E
Sbjct:   816 TAVGHAAMLAGIQRYVPGLIPSTYGSERLNLLRQLEKIKELQTNETESEE 865
GO:0005739 "mitochondrion" evidence=ISM
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0010075 "regulation of meristem growth" evidence=RCA
CGD|CAL0004088 MRS7 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A913 CaO19.3321 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278471 DDB_G0278471 "LETM1 and EF-hand domain-containing protein 1, mitochondrial" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC23C11.17 mdm28 "mitochondrial inner membrane protein involved in potassium ion transport Mdm28 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
FB|FBgn0019886 Letm1 "Letm1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000036838 AN2939 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000006329 YLH47 "Mitochondrial inner membrane protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TAIR|locus:2034136 LETM2 "leucine zipper-EF-hand-containing transmembrane protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00010279 letm-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVI.2373.1
hypothetical protein (827 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query896
pfam07766 268 pfam07766, LETM1, LETM1-like protein 8e-09
cd00613 398 cd00613, GDC-P, Glycine cleavage system P-protein, 0.002
>gnl|CDD|219562 pfam07766, LETM1, LETM1-like protein Back     alignment and domain information 
 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 6/97 (6%)

Query: 781 WQGTQLLAVDVGAAMELLRRALVGDELTQKEKQALQRTLTDLASVVPIGVLMLLPVTAVG 840
           + GT+LL +DV  + +LL + L G ELT++E++ L RT  DL  +VP  V +++P     
Sbjct: 16  YDGTRLLFIDVKISAKLLWKVLNGYELTRREREQLYRTTRDLFRLVPFSVFIIVPF--AE 73

Query: 841 HAAMLAAIQRYVPGLIPSTY--GPERLDLLRQLEKVK 875
               +A   +  P ++PST+    +R + L++L KV+
Sbjct: 74  LLLPIAL--KLFPNMLPSTFWTATQREEKLKKLLKVR 108

Members of this family are inner mitochondrial membrane proteins which play a role in potassium and hydrogen ion exchange. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans. Length = 268
>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and beta-subunits Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 896
KOG1043499 consensus Ca2+-binding transmembrane protein LETM1 100.0
KOG1043 499 consensus Ca2+-binding transmembrane protein LETM1 99.9
PF07766 268 LETM1: LETM1-like protein; InterPro: IPR011685 Thi 99.89
KOG4263 299 consensus Putative receptor CCR1 [Signal transduct 93.69
>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-57  Score=495.68  Aligned_cols=495  Identities=30%  Similarity=0.304  Sum_probs=462.7

Q ss_pred             HHHHHHHhhccccCCCcccchHHHHHHHHHHHHHHHHhhcccCCccccccccccchhhhHHHHhhHHHHHHHHHHHHhhh
Q 002653          105 VEEMRVKLNQSLQGNDYNDGLVQSLHDAARVFELAIKEKGSVSKLSWLSTAWLGVDRNAWIKTLSYQASAYSLLQAACEI  184 (896)
Q Consensus       105 ~~e~r~kl~~slq~~~~~~~LVq~LHdaAr~felav~~~~~~s~~swl~~aWlg~D~naW~K~LsYQaaVysLLqaaiei  184 (896)
                      ...||.++-+++|++..+..+-    +++|.+++|..+....+..+        +|.++|+++.+||+++|+++|++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~----~g~r~~~~~~~~~~t~~~~~--------~d~~~~~~~~s~~~s~~~~~~~~~~~   69 (499)
T KOG1043|consen    2 SSVYRSKLLGSLQDENNEGILR----DGARFRELATKEKITSSRLP--------VDKLAWVKTESYKASLYSLLQAVNLI   69 (499)
T ss_pred             hhHHHHHHhccccccccchhhh----hhHHHHHHHHHhhccccccc--------HHHHHHHhhhccchhhhhhhhhcccc
Confidence            5689999999999999888877    99999999999999999988        99999999999999999999999999


Q ss_pred             hccCCCCCCcchHHHHHHhhhhhchhHHHHHhHhhccCCccchhhhcccchhhhhHhhhccccccccccccccccCCccc
Q 002653          185 SSCGDGRDRDVYVFVQRSLLRQSAPLESLIRDKLSAKLPEGYEWFWSEQVPAVVTSFINYFERDQRFTAATAVSGKGMSL  264 (896)
Q Consensus       185 ssrg~~rDRdvnvfVqrsL~~~~apLe~~Ir~~Ls~r~P~~~eWfws~Q~P~vv~sFvn~le~d~rf~~at~~~~~~~~~  264 (896)
                      +++|+.+|.+.|++|+|++.+.-+|+...|+..||+.||+.++|+|.+++|..+..|+   ++++||..+|.++..+...
T Consensus        70 ~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~lss~~a~~~~~~~a~~k~s~~~~~~---~~lqhy~~gtkll~~e~ki  146 (499)
T KOG1043|consen   70 SARGNASDLDSSVKVLRELVQQAAPLALKIKELLSSKHAKKTEAFWAKEKPSLKTKFV---KGLQHYVDGTKLLGKEIKI  146 (499)
T ss_pred             ccccchhhhhhhHHHhHHHhhhccchhhhchhhccccchhhccccccccCccHHHHHH---HhhHHHhhhhhhhhhhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999   8999999999998887765


Q ss_pred             CCCCCCchhHHHHHHHHHHHHhhcCCcccccccchhhhhHHHHHHHhhhccceehhhHHHHHhhhhhhHHHHhhcCCCcc
Q 002653          265 GSGSSSDTSLLMLALTCIAAITKLGPAKVSCSQFSSMISDITGRLMDTLVDLVPISQAYYSIKDIGLHREFLAHFGPRAS  344 (896)
Q Consensus       265 ~~~~~SdvslL~Lalsc~aAi~kLGsa~vSCp~F~S~i~d~~grLMdml~~fvpv~q~Y~~~k~iGl~rEFL~hFGpraa  344 (896)
                      ++.     .|++++..|..+..+.|+.+-+||.||.+||+..       .-+||..++|+-+.-.+|.++|.+|||+++.
T Consensus       147 sak-----lLlkll~g~~ltrrE~~qL~rt~~d~frLvPfs~-------flivPf~El~Lp~~lKlfp~~lpstfq~~kk  214 (499)
T KOG1043|consen  147 SAK-----LLLKLLKGYELTRRERGQLKRTCSDIFRLVPFSK-------FLIVPFMELLLPIFLKLFPNDLPSTFQESKK  214 (499)
T ss_pred             hHH-----HHHHHHccCeeeHHHhhhHHhhccchheecccee-------eeeeehHHHHhHHHHhhccccchhhHHHHHH
Confidence            422     8999999999999999999999999999999988       7899999999999999999999999999999


Q ss_pred             cccccCCCCccceehhHHHHHHHHHHHHhHhhhhhccccchhHHHHhhhhhHHHHHHHhccchhhhhhcCCCCCcchhHH
Q 002653          345 ACRVKNDRDSEEVIFWVDLVQKQLQRAIDREKIWSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSRNGFDVVDDPIK  424 (896)
Q Consensus       345 ~~~~~~d~~~eEv~FWI~L~qkqL~~AidRE~IwsrL~tsesiEvlE~dLAifGfFiaLGRsTr~fLs~~g~~~ldd~i~  424 (896)
                      .|.++++ ..+|+.||.+++|++|+++++++++|+++.++++| +++++++.||| +++|.+|+.++.-+++-+.|-+++
T Consensus       215 ~~~k~~k-~~~~r~~~sk~Lq~tl~~~~~~~k~~~~~e~~qs~-~fd~f~~kvr~-~~~~~S~eeii~~aklf~de~~Ld  291 (499)
T KOG1043|consen  215 EEEKLSK-KYVERSEASKFLQKTLQQMIDRIKTWSNLETSQSI-EFDRFLGKVRF-IGLGVSTEEIIAFAKLFSDEITLD  291 (499)
T ss_pred             HHHHhhh-hHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHH-HHHHHHHHhcc-cCCCccHHHHHHHHHHhccchhhh
Confidence            9999999 88999999999999999999999999999999999 99999999999 999999999999999999999999


Q ss_pred             HHHHHHHcceEEEecccCccc--ceeeeeeeeeccccccccCCCCCCCCCCccCCCCCCCCCCCcccchhhhhhhhHhhh
Q 002653          425 SLIRYLIGGSVLYYPQLSSIS--SYQLYVEVVCEELDWLLFYPGSTGMPKQSHGHKSKREDPPNAEAIPQVLDVCSHWMQ  502 (896)
Q Consensus       425 ~~lrYL~gGsvl~YPQLSsIs--sYQLyvEVVcEEl~WLpFYp~~~~~~~~~~~h~~~~~~~~~~e~i~~vl~VCs~w~~  502 (896)
                      ++.|..++|...|||+.+-++  +|+.|                                                  +-
T Consensus       292 nLsR~qL~al~k~m~l~~~Gt~~~lr~~--------------------------------------------------lr  321 (499)
T KOG1043|consen  292 NLSRPQLVALCKYMDLNSFGTDKLLRYQ--------------------------------------------------LR  321 (499)
T ss_pred             ccCHHHHHHHHHhhcccccCchHHHHHH--------------------------------------------------HH
Confidence            999999999999999988775  55544                                                  34


Q ss_pred             hhhhhcccccCCCchhHHHHHhhhhhhHHHHHHHhhhccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 002653          503 SFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQ  582 (896)
Q Consensus       503 sFikyS~w~e~Psnvkaa~FLskg~~~L~eC~ee~~~~~~~~~~~~~~~~~~~~~~e~~s~dkalesv~~Al~rlE~Llq  582 (896)
                      +||+|.+|-.+|.++++|.++++++.+...|.++.+.+..-.++...++   .+.-...++|+++.+|..+|.|.+.+++
T Consensus       322 ~kik~ik~dD~~I~~eg~v~~ls~~el~~aC~~rgmra~gv~~e~l~~q---l~~wldlsl~~~vps~lL~Lsr~~~~~~  398 (499)
T KOG1043|consen  322 KKIKEIKKDDKHIATEGAVESLSLLELQIACRERGMRALGVSEERLREQ---LRVWLDLSLDKKVPSVLLLLSRTFSLGQ  398 (499)
T ss_pred             HHHHHhcccccchhhhhhhhHhhHHHHHHHHHhhhcchhccchhhhhHH---HHHHHhhhccccCchHHHHHhhhhhhhh
Confidence            6899999999999999999999999999999999988775444422222   2334556899999999999999999999


Q ss_pred             HhhcccCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCccccccccccCCCcccccccccCC
Q 002653          583 ALHVSSSNSGKEQLKAACSDLEKIRKLKKEAEFLEASVRAKAASLQQGGDDSDSGSSIGEKQWYLKGSKSRIADVVQDRP  662 (896)
Q Consensus       583 el~~sss~sgke~l~aacsDLekIr~LkkeaEfleasfraka~~l~~g~~~~~~~~~~~~~~~~~~~k~~~~~~v~ld~~  662 (896)
                      +.+.++|.+|+.+. ++|+|+++++++|++++++++++|+++..+++|+|+...+++-.++.+|..+|+.++.+..-++.
T Consensus       399 ~~~~~~s~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~l~~~e~~~~~e~eee~~~~~~~k~~~~~~~~~~~~  477 (499)
T KOG1043|consen  399 NSKAPSSSSGKLQI-AAPDDLEKLEKLKKEESELGAVDRKKKLELLREGEEIISEEEEEEEKQYGRAKDALKEKESAEKA  477 (499)
T ss_pred             cccCCchhhhHhhh-hccccHHHhcccccccccccccchHHHHHhhhccccccchhhhccccccccccccccCCCccccc
Confidence            99999999999999 99999999999999999999999999999999999999999999999999999999999887666


Q ss_pred             ccccccccCcccccccCCCCCCCC
Q 002653          663 NEVVCKSRGLFGFFTRPSIRKPKP  686 (896)
Q Consensus       663 ~~~~~~~~~~w~~f~r~~~~k~~~  686 (896)
                      .   ....++|++|.+...+++.|
T Consensus       478 ~---~~~~s~~~~~~~~~~~~~~~  498 (499)
T KOG1043|consen  478 A---SQAKSPWGFFVRQERKKALP  498 (499)
T ss_pred             c---cccccccccccchhhhcccC
Confidence            6   67899999999999998876

>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown] Back     alignment and domain information
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins Back     alignment and domain information
>KOG4263 consensus Putative receptor CCR1 [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query896
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 75.3 bits (184), Expect = 6e-14
 Identities = 111/699 (15%), Positives = 199/699 (28%), Gaps = 220/699 (31%)

Query: 104 DVEEMRVKLNQSLQGNDYNDGLVQSLHDAARVFEL--AIKEKGS--VSKL---------S 150
           DV++M       L   + +  ++ S    +    L   +  K    V K           
Sbjct: 37  DVQDM---PKSILSKEEIDH-IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92

Query: 151 WLSTAWLGVDRNAWIKTLSYQASAYSLLQAACEISSCGDGRDRDVYVFVQRSLLRQSAPL 210
           +L +      R   + T  Y                  D    D  VF + ++ R   P 
Sbjct: 93  FLMSPIKTEQRQPSMMTRMY--------------IEQRDRLYNDNQVFAKYNVSRLQ-PY 137

Query: 211 ESLIRDKLSAKLPEGYEWFWSEQVPAVV---------TSFINYFERDQRFTAATAVSGKG 261
             L R  L    P             V+         T          +      +  K 
Sbjct: 138 LKL-RQALLELRPAKN----------VLIDGVLGSGKTWVALDVCLSYKVQ--CKMDFKI 184

Query: 262 --MSLGSGSSSDTSLLMLALTCIAAITKLGPAKVSCSQFSSMISDITGRLMDTLVDLVPI 319
             ++L + +S +T L ML         ++ P   S S  SS I      +   L  L  +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLL----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--L 238

Query: 320 SQAYYS-----IKDIGLHREFLAHFGPRASACRV-KNDRDSEEVIFWVDLVQKQLQRAID 373
               Y      + ++  + +    F      C++    R   +V    D +       I 
Sbjct: 239 KSKPYENCLLVLLNVQ-NAKAWNAFNLS---CKILLTTRFK-QVT---DFLSAATTTHIS 290

Query: 374 REKIWSRLTTSESIEVLER-------DL-----AIFGFFIAL-GRSTQSFLSRNGF--DV 418
            +     LT  E   +L +       DL           +++   S +  L+       V
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 419 VDDPIKSLIRYLIGGSVLYYPQLSSISSYQLYVEVVCEELDWLLFYPGSTGMPKQSHGHK 478
             D + ++I             L      +++  +        +F               
Sbjct: 351 NCDKLTTIIE-------SSLNVLEPAEYRKMFDRLS-------VF--------------- 381

Query: 479 SKREDPPNAEAIP-QVLDVCSHWMQSFIKHSKWLENPSNVKAAKFLSKGYDKLMDCMKEM 537
                PP+A  IP  +L +             W +                 +M  + ++
Sbjct: 382 -----PPSAH-IPTILLSLI------------WFDVI------------KSDVMVVVNKL 411

Query: 538 GIARNGMIE-SAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALH---VSSSNSGK 593
              +  ++E   +  T S   I S   +  ++   E          ALH   V   N  K
Sbjct: 412 --HKYSLVEKQPKESTIS---IPSIYLELKVKLENE---------YALHRSIVDHYNIPK 457

Query: 594 ----EQLKAACSD----------LEKIRKLKKEAE---------FLEASVRAKAASLQQG 630
               + L     D          L+ I   ++            FLE  +R  + +    
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517

Query: 631 GDDSDSGSSIGEKQWYLKGSKSRIADVVQDRPNEVVCKSRGLFGFFTRPSIRKPKPQESE 690
           G   +   ++ + ++Y    K  I D   D   E +  +  +  F        PK +E+ 
Sbjct: 518 GSILN---TLQQLKFY----KPYICD--NDPKYERLVNA--ILDFL-------PKIEENL 559

Query: 691 YCEQTGSNIGIA-NSESNEIHRFELLRNELMELEKRVQR 728
            C +    + IA  +E   I  FE       E  K+VQR
Sbjct: 560 ICSKYTDLLRIALMAEDEAI--FE-------EAHKQVQR 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00