Citrus Sinensis ID: 002690

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890--

MSSTTPILHQNNHHQHRLLFSFTSKTTPFHSLHSLHFKRKPLLSFSSSYSASSSSQQHQSITRVSTAPVEYAPPPPDFNFHQEISRLKKLRSRLAVSQSLSHKLSVLDSDSRLKNFFNDKHSNYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELVEL

ccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccccEEEEEcccccccccccccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHccccccccccEEEEEcccEEEEEccccccccccccccccccccccHHHHHHHHccHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHcccccEEEEEEEccccccccEEEEEEEEcccccccccEEEEEEcccccccccccccccccccccccccEEEEEEEHHHHHHHcccccccccccEEEccccccccccccccEEEcccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEcccccccHHHHHccccccEEccccEEEEEEcEEEEEEEEEEEEEEEEEEccccccccccccccEEEccccccEEEEEEEEEEcccEEcccccccccccccEEEEEEEEEEEcccEEEEccEEEEccEEEEEcccEEEEEEEccccEEEEccccccccccccccEEEEEEcccEEEEEEEEc

cccccHHHEcccccccEEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHcccccccHHHHHHcccccHEEEEHHEEHcccccEEEccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHcHHccHccEEEEEccccHHHcccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHccccccccccEEEEEccccEEEEcccccEEEccccEEEEcccccHHHHHHHHHccHHHHHHHcccEEEEEEEccccEEEccccHHHHHHHcccccccccEEEEcccccccccEEEEEEEEcccccEEEEEEEEEEEcccccccccccccccccccccccccEEEEEEcHHHHHHHccccccccccEEEEcccccEEEccccccccccccHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccccccHHHHcccccccHHccccccccccccccHHcccccccHHHccccccccHHHHHHHHHHHHHHcccccccccccHHHHcccccEEEEEccccHHHHHHHHHHccccEEccccEEEEEEEEEEEEEEEEccEEEEEEccccccccccccccEEEEEcccccEEEEEEEEEEEccEEccccccEEEEccEEEEEEEEEEEEcccEEEEEEEEEEccEEEEEccccEEEEEEccccEEEEEccccHHHcccccEEEEEEEcccEEEEEEEEc

mssttpilhqnnhhqhrllfsftskttpfhslhslhfkrkpllsfsssysassssqqhqsitrvstapveyappppdfnfHQEISRLKKLRSRLAVSQSLShklsvldsdsrlknffndkHSNYFARVLASLNLDQLFLIKCVIAAGQehvlnlepeyvesEARSDIKSALYALVEFIDrldvngrnseakDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKferkttksqhvhesmecqfleihvpsgldlsqnTEYAAQAALWGieglpelgeiyplggsadrlglvdhetgeclpaamlpyCGRTLLEGLIRDLQAREFLYFKLygkqcitpvAIMTSSAKNNHERITSLCERLRwfgrgqssfqlfeqplvpavdaedgqwlvmrpfapvckpgghgaIWKLAHDKGIFKwfhdngrkgatvRQVSNVVAATDLTLLALAGIglhhgkklgfasckrssgateGINVLIEKknldgkwayglscieytefdkfgitrgpfssnglqadfpantniLYVDLASaelvgssenerslpgmvlntkkpivymdnfgdthsvpggrleCTMQNIADNFLNTYSSrcykgveddldtfmVYNERRRVTSSAKKKRkradmslhqclnvrnccngtagksydsntftrclhqrtpdgsfLDILRNAYDILCQChiklpeiegndkyiddgppyliLLHPALGLLWEVTRqkfkggsvskgseLQIEVAEFLWRNVQLDGSLIIVAENvmgstriadngESILQYGyrcgrcklnnvkvlnkgidwdcgdntywkHDVQWFEALKVILHGnaefeasdvtlqgnhvfevpdghklkitsgnsglvvqldpieqnmmdtgswhwnykingSHIVLELVEL

mssttpilhqnnhHQHRLLFSFTSKTTPFHSLHSLHFKRKPLLSFSSSYSASSSSQQHQSITRVSTAPVEYAPPPPDFNFHQEISRLKKLRSRLAVSqslshklsvldsdsrLKNFFNDKHSNYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAkdavleieqvKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLiekknldgkwAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVgssenerslpgmvlNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVeddldtfmvynerrrvtssakkkrkradmslhqclnVRNCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELVEL

MSSTTPILhqnnhhqhRLLFSFTSKTTPFHSLHSLHFKRKPLLsfsssysassssqqhqsITRVSTAPVEYAPPPPDFNFHQEISRLKKLRSRLAVSQSLSHKLSVLDSDSRLKNFFNDKHSNYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVaatdltllalaGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELVEL

***************HRLLFSFTSKTTPFHSLHSLHF**************************************************************************RLKNFFNDKHSNYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKF*********VHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELV**********GMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNE*****************SLHQCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELV**

*****P***QNNHHQHRLLFSFTSKTTPFHSLHSLHFKRKPL***************************************QEISRLKKL***************VLDSDSRLKNFFNDK****FARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEY*************YALVEFIDRLDV*****************KDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELL***********************************QNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFD************GLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSS*************QCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFK**SVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELVEL

MSSTTPILHQNNHHQHRLLFSFTSKTTPFHSLHSLHFKRKPLLSF*******************STAPVEYAPPPPDFNFHQEISRLKKLRSRLAVSQSLSHKLSVLDSDSRLKNFFNDKHSNYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFE**********ESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERR***************SLHQCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELVEL

****TPILHQNNHHQHRLLFSFTSKTTPFHSLHSLHFKRKPLL***************QSITRVSTAPVEYAPPPPDFNFHQEISRLKKLRSRLAVSQSLSHKLSVLDSDSRLKNFFNDKHSNYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNG******DAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKF**************ECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVT*******************************YDSNTFTRCLHQRTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPYLILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEFEASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVLELVEL

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		892	2.2.26 [Sep-21-2011]
Q0GZS3		614	UDP-sugar pyrophospharyla	N/A	no	0.452	0.657	0.241	5e-07
Q5W915		600	UDP-sugar pyrophospharyla	N/A	no	0.547	0.813	0.237	5e-07
Q9C5I1		614	UDP-sugar pyrophosphoryla	no	no	0.615	0.894	0.219	2e-06
Q09WE7		600	UDP-sugar pyrophosphoryla	no	no	0.415	0.618	0.247	9e-06
Q6GEQ8		395	Probable uridylyltransfer	yes	no	0.161	0.364	0.253	0.0003
Q7A0A0		395	Probable uridylyltransfer	yes	no	0.161	0.364	0.240	0.0009
Q6G7E3		395	Probable uridylyltransfer	yes	no	0.161	0.364	0.240	0.0009
Q7A4A4		395	Probable uridylyltransfer	yes	no	0.161	0.364	0.240	0.0009
Q99S95		395	Probable uridylyltransfer	yes	no	0.161	0.364	0.240	0.0009

>sp\|Q0GZS3\|USP_CUCME UDP-sugar pyrophospharylase OS=Cucumis melo GN=USP PE=1 SV=1	Back alignment and function desciption

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 187/480 (38%), Gaps = 76/480 (15%)

Query: 296 GGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGK-QCITPVAI 354
           GG  +RLG   +     LPA      G   L+  I  + A      +L G+ +   P  I
Sbjct: 148 GGLGERLGY--NGIKVALPAETT--TGTCFLQSYIEYVLALREASNRLAGESETEIPFVI 203

Query: 355 MTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRP---FAPVC 411
           MTS   + H R   L E   +FG   S  +L +Q  V  +D  + + L + P   +    
Sbjct: 204 MTSD--DTHTRTVELLESNSYFGMKPSQVKLLKQEKVACLDDNEAR-LAVDPHNKYRIQT 260

Query: 412 KPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLAL-AGIGLHHGKKL 470
           KP GHG +  L +  G+ K +H+ G +     Q +N      L   A+ A +G+   ++ 
Sbjct: 261 KPHGHGDVHALLYSSGLLKNWHNAGLRWVLFFQDTN-----GLLFKAIPASLGVSATREY 315

Query: 471 GFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF----GITRGPFSSNGLQ 526
              S      A E I  +    + DG+    +  +EY + D      G   G  ++    
Sbjct: 316 HVNSLAVPRKAKEAIGGITRLTHTDGRSM--VINVEYNQLDPLLRATGFPDGDVNNETGY 373

Query: 527 ADFPANTNILYVDLAS--AELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLE 584
           + FP N N L ++L S   EL   S+ + ++   V N K       +F  +      RLE
Sbjct: 374 SPFPGNINQLILELGSYIEEL---SKTQGAIKEFV-NPKYKDATKTSFKSST-----RLE 424

Query: 585 CTMQNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQCLNVR 644
           C MQ+         S+R    V   +DT++ Y   +     A K  K             
Sbjct: 425 CMMQDYPKTL--PPSARVGFTV---MDTWVAYAPVKNNPEDAAKVPK------------- 466

Query: 645 NCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAYDILCQCHIKLPE-IEG--NDKYI 701
                  G  Y S T              + I R    +L +  +K+ + +E   N + +
Sbjct: 467 -------GNPYHSAT-----------SGEMAIYRANSLVLRKAGVKVADPVEQVFNGQEV 508

Query: 702 DDGPPYLILLHPALGLLWEVTRQKFKGG-SVSKGSELQIEVAEFLWRNVQLDGSLIIVAE 760
           +  P   I   P  GL +   + K  G  S+S  S L I+      +++ LDG+LI+ A+
Sbjct: 509 EVWP--RITWKPKWGLTFSEIKSKINGNCSISPRSTLVIKGKNVYLKDLSLDGTLIVNAD 566

May function as the terminal enzyme of the myo-inositol oxidation (MIO) pathway. May also play a role in the salvage pathway for synthesis of nucleotide sugars. Can convert galactose-1-phosphate into glucose-1-phosphate by carrying out both the Gal-1-P conversion to UDP-Gal and, following an epimerase step, the subsequent reverse reaction of UDP-Glc to Glc-1-P.
Cucumis melo (taxid: 3656)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6EC: 4

>sp\|Q5W915\|USP_PEA UDP-sugar pyrophospharylase OS=Pisum sativum GN=USP PE=1 SV=1	Back alignment and function description

>sp\|Q9C5I1\|USP_ARATH UDP-sugar pyrophosphorylase OS=Arabidopsis thaliana GN=USP PE=1 SV=1	Back alignment and function description

>sp\|Q09WE7\|USP1_SOYBN UDP-sugar pyrophosphorylase 1 OS=Glycine max GN=USP1 PE=1 SV=1	Back alignment and function description

>sp\|Q6GEQ8\|URTF_STAAR Probable uridylyltransferase SAR2262 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2262 PE=3 SV=1	Back alignment and function description

>sp\|Q7A0A0\|URTF_STAAW Probable uridylyltransferase MW2097 OS=Staphylococcus aureus (strain MW2) GN=MW2097 PE=3 SV=1	Back alignment and function description

>sp\|Q6G7E3\|URTF_STAAS Probable uridylyltransferase SAS2072 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2072 PE=3 SV=1	Back alignment and function description

>sp\|Q7A4A4\|URTF_STAAN Probable uridylyltransferase SA1974 OS=Staphylococcus aureus (strain N315) GN=SA1974 PE=1 SV=1	Back alignment and function description

>sp\|Q99S95\|URTF_STAAM Probable uridylyltransferase SAV2171 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2171 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		892
224109282		877	predicted protein [Populus trichocarpa]	0.956	0.972	0.719	0.0
255574832		884	conserved hypothetical protein [Ricinus	0.901	0.909	0.713	0.0
225448507		860	PREDICTED: uncharacterized protein LOC10	0.943	0.979	0.700	0.0
147794750		866	hypothetical protein VITISV_024684 [Viti	0.943	0.972	0.693	0.0
356568154		857	PREDICTED: uncharacterized protein LOC10	0.941	0.980	0.685	0.0
357461351		868	hypothetical protein MTR_3g071440 [Medic	0.958	0.985	0.661	0.0
18410414		883	UDP-glucose pyrophosphorylase 3 [Arabido	0.959	0.969	0.643	0.0
297820348		883	hypothetical protein ARALYDRAFT_486043 [	0.960	0.970	0.635	0.0
356539993		766	PREDICTED: uncharacterized protein LOC10	0.845	0.984	0.711	0.0
449441288		865	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.949	0.979	0.649	0.0

>gi\|224109282\|ref\|XP_002315147.1\| predicted protein [Populus trichocarpa] gi\|222864187\|gb\|EEF01318.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1276 bits (3302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/904 (71%), Positives = 741/904 (81%), Gaps = 51/904 (5%)

Query: 2   SSTTPILHQNNHHQHRLLFSFTSKTTPFHSLHSLHFKRKPLLSFSSSYSASSSSQQHQSI 61
           SST  +L  NN  ++  LFSF S    F+   SL FK+    S      + SSS      
Sbjct: 10  SSTNILLRYNNKKRNDFLFSFNS-INLFNK--SLPFKKP---SLHPPLLSLSSSPSKPLT 63

Query: 62  TRVSTAPVEYAPPPPD-FNFHQEISRLKKLRSRLAVSQSLSHKLSVLDSDSRLKNFFNDK 120
           TRVS APVEYAPP PD FNFHQEISRL+ LRS+LA S++L+ K SVL+ DSR+K FF   
Sbjct: 64  TRVSIAPVEYAPPAPDSFNFHQEISRLQSLRSKLAHSKTLNGKQSVLNDDSRVKRFFK-- 121

Query: 121 HSNYFARVLASLNLD--QLFLIKCVIAAGQEHVLNLEP-EYVESEA----RSDIKSALYA 173
                +R L S+NL   +LFL+KC++AAGQEHV++LE  E VESEA    R+ +KSALY+
Sbjct: 122 -IGGVSRFLDSINLTSRELFLLKCLVAAGQEHVVSLEGFELVESEAVESVRTSVKSALYS 180

Query: 174 LVEFIDRLDVNGRNSEAKDAV-----LEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQV 228
           LVE I+  D++   ++  + +     L  E++KDL KLLK+L E+E+FYDC+GG+IGYQ+
Sbjct: 181 LVEIIEGFDLSDNGNKGLERINYGENLTDEEIKDLKKLLKSLGEVEEFYDCIGGVIGYQI 240

Query: 229 EVLELLAQSKFERKTTK-SQHVHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLP 287
            VLELL QS F+++TT  SQH+ ESMECQFLEIH PSGLDLS+NTEYA+QAALWGIEGLP
Sbjct: 241 MVLELLFQSTFKKQTTNWSQHIKESMECQFLEIHAPSGLDLSKNTEYASQAALWGIEGLP 300

Query: 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQ 347
           +LGEIYPLGGSADRLGLVD +TGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFK+YGKQ
Sbjct: 301 DLGEIYPLGGSADRLGLVDPDTGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKIYGKQ 360

Query: 348 CITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPF 407
           CITPVAIMTSSAKNNHE ITSLCERL WFGRGQSSFQLFEQPLVPA+ AEDGQWLV +PF
Sbjct: 361 CITPVAIMTSSAKNNHEHITSLCERLSWFGRGQSSFQLFEQPLVPAISAEDGQWLVTKPF 420

Query: 408 APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHG 467
           APVCKPGGHG IWKLA+DKGIF+WF+D+ RKGATVRQVSNVVAATDLTLLALAGIGL H 
Sbjct: 421 APVCKPGGHGVIWKLAYDKGIFEWFYDHDRKGATVRQVSNVVAATDLTLLALAGIGLRHR 480

Query: 468 KKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527
           KKLGFASCKR+SGATEGINVLIEKKNLDG+WAYGLSCIEYTEFDKF IT GP S+NGLQA
Sbjct: 481 KKLGFASCKRNSGATEGINVLIEKKNLDGQWAYGLSCIEYTEFDKFEITGGPCSTNGLQA 540

Query: 528 DFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTM 587
           +FPANTNILYVDL S ELV SS NE+SLPGMVLNTKKPIVYMD++G+ HSV GGRLECTM
Sbjct: 541 EFPANTNILYVDLPSLELVASSNNEKSLPGMVLNTKKPIVYMDHYGNCHSVYGGRLECTM 600

Query: 588 QNIADNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQCLNVRNCC 647
           QNIADNF NTY SRCYKGVED LDTF+VYNERRRVTSSAK+KR+ +D +LHQ        
Sbjct: 601 QNIADNFTNTYLSRCYKGVEDKLDTFIVYNERRRVTSSAKRKRRHSDNTLHQ-------- 652

Query: 648 NGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAYDILCQCHIKLPEIEGNDKYIDDGPPY 707
                               TPDG+ LDILRNAYD+L  C I+LP+IEGNDKY++ GPP+
Sbjct: 653 --------------------TPDGALLDILRNAYDLLSHCDIELPQIEGNDKYVESGPPF 692

Query: 708 LILLHPALGLLWEVTRQKFKGGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAENVMGSTR 767
           LI LHPALG LWEVTRQKF GGS+SKGSELQIEVAEF WRNVQLDGSLII+AENVMGSTR
Sbjct: 693 LIYLHPALGPLWEVTRQKFNGGSISKGSELQIEVAEFSWRNVQLDGSLIIIAENVMGSTR 752

Query: 768 IADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKVILHGNAEF 827
           I  NGE ILQYG RCGRC+L NVKV+NKGI+W  GDN YWKHDVQ FEALKVILHGNAEF
Sbjct: 753 IDPNGEPILQYGNRCGRCRLQNVKVVNKGINWSFGDNIYWKHDVQRFEALKVILHGNAEF 812

Query: 828 EASDVTLQGNHVFEVPDGHKLKITSGNSGLVVQLDPIEQNMMDTGSWHWNYKINGSHIVL 887
           EA +VT+QGN +FE+PDG+K+KITSG+SGL VQL+P+EQ +MD+GSWHWNYKI+GSHI L
Sbjct: 813 EADNVTIQGNQIFEIPDGYKMKITSGDSGLQVQLNPLEQKIMDSGSWHWNYKIHGSHIQL 872

Query: 888 ELVE 891
           ELVE
Sbjct: 873 ELVE 876

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255574832\|ref\|XP_002528323.1\| conserved hypothetical protein [Ricinus communis] gi\|223532278\|gb\|EEF34081.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|225448507\|ref\|XP_002273020.1\| PREDICTED: uncharacterized protein LOC100241552 [Vitis vinifera] gi\|297736576\|emb\|CBI25447.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147794750\|emb\|CAN60362.1\| hypothetical protein VITISV_024684 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356568154\|ref\|XP_003552278.1\| PREDICTED: uncharacterized protein LOC100788781 [Glycine max]	Back alignment and taxonomy information

>gi\|357461351\|ref\|XP_003600957.1\| hypothetical protein MTR_3g071440 [Medicago truncatula] gi\|355490005\|gb\|AES71208.1\| hypothetical protein MTR_3g071440 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|18410414\|ref\|NP_567031.1\| UDP-glucose pyrophosphorylase 3 [Arabidopsis thaliana] gi\|332645948\|gb\|AEE79469.1\| UDP-glucose pyrophosphorylase 3 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297820348\|ref\|XP_002878057.1\| hypothetical protein ARALYDRAFT_486043 [Arabidopsis lyrata subsp. lyrata] gi\|297323895\|gb\|EFH54316.1\| hypothetical protein ARALYDRAFT_486043 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356539993\|ref\|XP_003538476.1\| PREDICTED: uncharacterized protein LOC100804343 [Glycine max]	Back alignment and taxonomy information

>gi\|449441288\|ref\|XP_004138414.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101221986 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		892
TAIR\|locus:2082038		883	UGP3 "UDP-glucose pyrophosphor	0.692	0.699	0.635	7.7e-302
TAIR\|locus:2149574		614	USP "UDP-sugar pyrophosphoryla	0.377	0.548	0.240	4.9e-08

TAIR\|locus:2082038 UGP3 "UDP-glucose pyrophosphorylase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2039 (722.8 bits), Expect = 7.7e-302, Sum P(2) = 7.7e-302
 Identities = 407/640 (63%), Positives = 480/640 (75%)

Query:    19 LFSFTSKTTP--FHSLH---SLHFKRKPLLXXXXXXXXXXXXXXXXXITRVSTAPVEYAP 73
             LF F + T+P  F SLH    L F                       +  VST PVEY+ 
Sbjct:    19 LFHFRTTTSPRSFSSLHFRKPLLFLSSSS-SFSSKLQQSEQQCNNHQVRHVSTVPVEYST 77

Query:    74 P-PPDFN-FHQEISRLKKLRSRLAVSQSLSHKLSVLDSDSRLKNFFNDKHSNYFARVLA- 130
             P PP+ + F  EI RLK L S+L VS+ L  K +V+D+DSR++ FF++      ++V   
Sbjct:    78 PTPPESDDFLSEIDRLKSLLSKLDVSKDLRRKDAVIDADSRVRRFFSENRGG-LSKVFGY 136

Query:   131 -SLNLDQLFLIKCVIAAGQEHVL--NLEPEYVESE----ARSDIKSALYALVEFIDRLDV 183
               LN +++FL+KCVIAAGQEH L  N E  + E E     RS +K+ALYALVE I+R DV
Sbjct:   137 LGLNSNEMFLVKCVIAAGQEHALCMNYEEAFGEEEEEYTVRSSVKNALYALVEMIERFDV 196

Query:   184 NGRNSEAK---DAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFE 240
             N    + +     VL+ E++    K L  L EIEQFYDC+GGIIGYQV VLELL QS   
Sbjct:   197 NSSGYKGRREMGTVLDSEEIAHFRKFLTFLEEIEQFYDCIGGIIGYQVMVLELLHQSSKR 256

Query:   241 RKTTKSQHVHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSAD 300
             R T +SQ V ES+ CQ+LE+H PS LDL+Q  +YA+QAALWGIEGLP+LGEIYPLGG+AD
Sbjct:   257 RNTNRSQLVEESLGCQYLEMHTPSVLDLTQEEDYASQAALWGIEGLPDLGEIYPLGGAAD 316

Query:   301 RLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAK 360
             RLGL+D ETGECLPAAML +CGRTLLEGLIRDLQAREFLYFKLYGKQC+TPVAIMTS+AK
Sbjct:   317 RLGLIDSETGECLPAAMLAHCGRTLLEGLIRDLQAREFLYFKLYGKQCVTPVAIMTSAAK 376

Query:   361 NNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIW 420
             NNHE ++SLCERL+WFGRGQS+F+LFEQPLVPAV AEDGQW+V +PF PV KPGGHG IW
Sbjct:   377 NNHEHVSSLCERLKWFGRGQSNFRLFEQPLVPAVSAEDGQWIVSKPFVPVSKPGGHGVIW 436

Query:   421 KLAHDKGIFKWFHDNGRKGATVRQVSNVVXXXXXXXXXXXGIGLHHGKKLGFASCKRSSG 480
             KLA+DKG+F WF+D+GRKGATVRQVSNVV           GIGL + KKLGFASCKR++G
Sbjct:   437 KLAYDKGVFNWFYDHGRKGATVRQVSNVVAATDVTLLALAGIGLRYNKKLGFASCKRNAG 496

Query:   481 ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGIT-RGPFSSNGLQADFPANTNILYVD 539
             ATEGINVL+EKKN DGKW YG+SCIEYTEFDKF I+ R P SSNGLQADFPANTNILYVD
Sbjct:   497 ATEGINVLMEKKNFDGKWEYGISCIEYTEFDKFDISNRSP-SSNGLQADFPANTNILYVD 555

Query:   540 LASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIADNFLNTYS 599
             L SAEL+GSS N +SLP MVLNTKK I Y+D +GD HSV GGRLECTMQNIADNF N + 
Sbjct:   556 LHSAELIGSSSNAKSLPNMVLNTKKRIEYLDQYGDYHSVMGGRLECTMQNIADNFFNKFP 615

Query:   600 SRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQ 639
             SRC+  +ED LDT++VYNERR+VTSSAKKK+  A  +LHQ
Sbjct:   616 SRCHGSLEDKLDTYIVYNERRKVTSSAKKKKPHASAALHQ 655

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR\|locus:2149574 USP "UDP-sugar pyrophosphorylase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		892
cd04193		323	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphoryl	5e-12
cd06424		315	cd06424, UGGPase, UGGPase catalyzes the synthesis	2e-10
PLN02830		615	PLN02830, PLN02830, UDP-sugar pyrophosphorylase	1e-09
COG4284		472	COG4284, COG4284, UDP-glucose pyrophosphorylase [C	1e-07
PTZ00339		482	PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyroph	7e-05

>gnl\|CDD\|133036 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	Back alignment and domain information

 Score = 67.6 bits (166), Expect = 5e-12
 Identities = 56/224 (25%), Positives = 84/224 (37%), Gaps = 33/224 (14%)

Query: 296 GGSADRLGLVDHETGECLPAAMLPYCG----RTLLEGLIRDLQAREFLYFKLYGKQCITP 351
           GG   RLG          P  M P  G    ++L +     +   + L  +  GK+   P
Sbjct: 23  GGQGTRLGF-------DGPKGMFP-VGLPSKKSLFQLQAERILKLQELAGEASGKKVPIP 74

Query: 352 VAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVC 411
             IMTS  +  HE      +   +FG        F+Q ++P VD  DG+ L+        
Sbjct: 75  WYIMTS--EATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVD-FDGKILLEEKGKIAM 131

Query: 412 KPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAG---IGLHHGK 468
            P G+G ++K     GI +     G K   V  V N+       L+ +A    IG    K
Sbjct: 132 APNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI-------LVKVADPVFIGFCISK 184

Query: 469 KLGFAS-CKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFD 511
                +   R    TE + V++     DGK       +EY+E  
Sbjct: 185 GADVGAKVVRKRYPTEKVGVVVLV---DGKPQV----VEYSEIS 221

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. Length = 323

>gnl\|CDD\|133046 cd06424, UGGPase, UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose	Back alignment and domain information

>gnl\|CDD\|215444 PLN02830, PLN02830, UDP-sugar pyrophosphorylase	Back alignment and domain information

>gnl\|CDD\|226734 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|240368 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		892
PLN02830		615	UDP-sugar pyrophosphorylase	100.0
PLN02435		493	probable UDP-N-acetylglucosamine pyrophosphorylase	100.0
cd06424		315	UGGPase UGGPase catalyzes the synthesis of UDP-Glu	100.0
PTZ00339		482	UDP-N-acetylglucosamine pyrophosphorylase; Provisi	100.0
KOG2388		477	consensus UDP-N-acetylglucosamine pyrophosphorylas	100.0
PLN02474		469	UTP--glucose-1-phosphate uridylyltransferase	100.0
PF01704		420	UDPGP: UTP--glucose-1-phosphate uridylyltransferas	100.0
cd04193		323	UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala	100.0
cd00897		300	UGPase_euk Eukaryotic UGPase catalyses the synthes	100.0
KOG2638		498	consensus UDP-glucose pyrophosphorylase [Carbohydr	100.0
COG4284		472	UDP-glucose pyrophosphorylase [Carbohydrate transp	100.0
cd04180		266	UGPase_euk_like Eukaryotic UGPase-like includes UD	100.0
PRK05293		380	glgC glucose-1-phosphate adenylyltransferase; Prov	97.69
PRK00844		407	glgC glucose-1-phosphate adenylyltransferase; Prov	97.62
cd06915		223	NTP_transferase_WcbM_like WcbM_like is a subfamily	97.58
cd04197		217	eIF-2B_epsilon_N The N-terminal domain of epsilon	97.52
cd02540		229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	97.51
PRK14352		482	glmU bifunctional N-acetylglucosamine-1-phosphate	97.5
cd04181		217	NTP_transferase NTP_transferases catalyze the tran	97.49
TIGR02092		369	glgD glucose-1-phosphate adenylyltransferase, GlgD	97.45
PRK02862		429	glgC glucose-1-phosphate adenylyltransferase; Prov	97.45
cd04189		236	G1P_TT_long G1P_TT_long represents the long form o	97.44
PRK14360		450	glmU bifunctional N-acetylglucosamine-1-phosphate	97.44
PRK14356		456	glmU bifunctional N-acetylglucosamine-1-phosphate	97.42
PRK14359		430	glmU bifunctional N-acetylglucosamine-1-phosphate	97.4
PRK15480		292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	97.36
PRK05450		245	3-deoxy-manno-octulosonate cytidylyltransferase; P	97.31
PRK14353		446	glmU bifunctional N-acetylglucosamine-1-phosphate	97.26
PRK14358		481	glmU bifunctional N-acetylglucosamine-1-phosphate	97.21
PRK14355		459	glmU bifunctional N-acetylglucosamine-1-phosphate	97.21
PF00483		248	NTP_transferase: Nucleotidyl transferase This Pros	97.2
COG1207		460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	97.19
cd02509		274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	97.16
cd06426		220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	97.16
PRK00725		425	glgC glucose-1-phosphate adenylyltransferase; Prov	97.15
TIGR01207		286	rmlA glucose-1-phosphate thymidylyltransferase, sh	97.15
PLN02241		436	glucose-1-phosphate adenylyltransferase	97.14
cd02508		200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	97.12
cd02538		240	G1P_TT_short G1P_TT_short is the short form of glu	97.08
TIGR01173		451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	97.05
TIGR01208		353	rmlA_long glucose-1-phosphate thymidylylransferase	96.96
cd06428		257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	96.94
TIGR02623		254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	96.89
PRK14357		448	glmU bifunctional N-acetylglucosamine-1-phosphate	96.88
cd06425		233	M1P_guanylylT_B_like_N N-terminal domain of the M1	96.84
cd02517		239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	96.83
PRK10122		297	GalU regulator GalF; Provisional	96.76
TIGR02091		361	glgC glucose-1-phosphate adenylyltransferase. This	96.76
TIGR00454		183	conserved hypothetical protein TIGR00454. At this	96.67
cd02524		253	G1P_cytidylyltransferase G1P_cytidylyltransferase	96.66
PRK13385		230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	96.6
PRK13368		238	3-deoxy-manno-octulosonate cytidylyltransferase; P	96.56
cd04198		214	eIF-2B_gamma_N The N-terminal domain of gamma subu	96.42
PRK09451		456	glmU bifunctional N-acetylglucosamine-1-phosphate	96.41
TIGR01099		260	galU UTP-glucose-1-phosphate uridylyltransferase.	96.38
PRK14354		458	glmU bifunctional N-acetylglucosamine-1-phosphate	96.37
COG2266		177	GTP:adenosylcobinamide-phosphate guanylyltransfera	96.33
PLN02728		252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	96.32
PF01128		221	IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly	96.32
cd06422		221	NTP_transferase_like_1 NTP_transferase_like_1 is a	96.23
cd04182		186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	96.2
TIGR01105		297	galF UTP-glucose-1-phosphate uridylyltransferase,	96.18
cd02523		229	PC_cytidylyltransferase Phosphocholine cytidylyltr	96.16
COG0746		192	MobA Molybdopterin-guanine dinucleotide biosynthes	96.09
TIGR01479		468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	96.01
COG1213		239	Predicted sugar nucleotidyltransferases [Cell enve	96.01
PRK00560		196	molybdopterin-guanine dinucleotide biosynthesis pr	95.96
cd02513		223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	95.95
TIGR03310		188	matur_ygfJ molybdenum hydroxylase accessory protei	95.65
PLN02917		293	CMP-KDO synthetase	95.65
PF12804		160	NTP_transf_3: MobA-like NTP transferase domain; PD	95.57
TIGR02665		186	molyb_mobA molybdopterin-guanine dinucleotide bios	95.51
cd02503		181	MobA MobA catalyzes the formation of molybdopterin	95.46
TIGR00453		217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	95.32
cd02516		218	CDP-ME_synthetase CDP-ME synthetase is involved in	95.27
TIGR03202		190	pucB xanthine dehydrogenase accessory protein pucB	95.19
PRK00155		227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	95.19
PRK02726		200	molybdopterin-guanine dinucleotide biosynthesis pr	95.18
cd02507		216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	95.15
COG1209		286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	95.14
PRK00317		193	mobA molybdopterin-guanine dinucleotide biosynthes	95.11
PRK14490		369	putative bifunctional molybdopterin-guanine dinucl	95.04
PRK14489		366	putative bifunctional molybdopterin-guanine dinucl	94.6
COG1208		358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	94.49
TIGR00466		238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	94.4
cd02541		267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	94.26
COG1211		230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	94.14
COG0448		393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	94.0
PRK14500		346	putative bifunctional molybdopterin-guanine dinucl	93.98
PRK09382		378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	93.75
cd04183		231	GT2_BcE_like GT2_BcbE_like is likely involved in t	93.36
PRK13389		302	UTP--glucose-1-phosphate uridylyltransferase subun	91.78
KOG1322		371	consensus GDP-mannose pyrophosphorylase/mannose-1-	90.64
cd02518		233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	89.17
PRK15460		478	cpsB mannose-1-phosphate guanyltransferase; Provis	89.03
TIGR03584		222	PseF pseudaminic acid CMP-transferase. The sequenc	83.34
COG0836		333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	82.28

>PLN02830 UDP-sugar pyrophosphorylase	Back alignment and domain information

Probab=100.00  E-value=2.2e-120  Score=1051.07  Aligned_cols=576  Identities=25%  Similarity=0.326  Sum_probs=514.5

Q ss_pred             chhHHhhccCCccHHHHHHHHHHcCccccccccccccchhhhhhHHHHHHHHHHhhhhccccCCCccchhhhhhhhhHHH
Q 002690          123 NYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKD  202 (892)
Q Consensus       123 ~~~~~~~~~l~~~~~~L~~~L~~~GQeHll~~w~el~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~d~~~~e  202 (892)
                      ++|+++++.|++++++|+++|.++||+|||++|+++.                                   +++   ++
T Consensus        14 ~~~~~~~~~~~~~~~~l~~~L~~~gQ~HL~~~w~~l~-----------------------------------~~~---~e   55 (615)
T PLN02830         14 PSLHSNLALLSPDQRALVRRLLELGQSHLFEHWPEPG-----------------------------------VDD---DD   55 (615)
T ss_pred             cccccccccCChhHHHHHHHHHHcCcHHHHhhhhccC-----------------------------------CCH---HH
Confidence            6899999999999999999999999999999999951                                   133   38


Q ss_pred             HHHHHHHHHHHhccccCcCchhhHHHHHHHHHHccccccccccccccccccccccccc-c-CCCCCccCCChHHHHHHHH
Q 002690          203 LNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-H-VPSGLDLSQNTEYAAQAAL  280 (892)
Q Consensus       203 k~~Ll~qL~~ld~~y~~~gGL~~y~~~a~~lL~~s~~~~~~~~~~~~~~~~~~p~~~~-~-vP~g~~l~~~~~~~~~~~~  280 (892)
                      |++|++||..+|..||  ||+.+|+.++.+++.++..  +.           .+++.+ + +|.+..++++++....+++
T Consensus        56 ~~~L~~qL~~ld~~y~--g~l~~~~~~~~~~l~~s~~--~~-----------~~~~~i~P~vp~~~~~~~~~~~~~~~~~  120 (615)
T PLN02830         56 KRRLLEQVARLDESYP--GGLAAYVSNAKELLADSKE--GV-----------NPFEGWTPSVPEGEVLEYGSEEFVELEE  120 (615)
T ss_pred             HHHHHHHHHhcccccc--chHHHHHHHHHHHHhhccc--CC-----------CchhhcccCCCccccccccchhhhHHHH
Confidence            9999999999999997  9999999999999986521  11           134443 4 5778777776666677888


Q ss_pred             HhhhccCcEEEEEecCCccccCCCCCCCCCceeeccccCCCCCcchHHHHHHHHHHHHHhHhhcC-CcccceEEEecCCC
Q 002690          281 WGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG-KQCITPVAIMTSSA  359 (892)
Q Consensus       281 ~Gle~L~kvAvVlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~~e~I~~lq~La~k~~G-~~~~IPl~IMTS~~  359 (892)
                      +|+++|+|+|||+|||||||||||++||+  +|||+++  +++||||++++||+++|+||.++.+ ..+.||||||||+ 
T Consensus       121 ~Gl~~l~kvavllLaGGlGTRLG~~~pK~--~lpv~~~--~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~-  195 (615)
T PLN02830        121 AGLREAGNAAFVLVAGGLGERLGYSGIKV--ALPTETA--TGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSD-  195 (615)
T ss_pred             HHHHHhCcEEEEEecCCcccccCCCCCCc--ceecccC--CCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCc-
Confidence            99999999999999999999999999999  9999876  9999999999999999999987654 5689999999999 


Q ss_pred             CCchHHHHHHHHHhCCCCCCCCceEEEecCCeeeEecCCCcccccC--CCCcccccCCCcHHHHHHHhcCchHHHHHcCc
Q 002690          360 KNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMR--PFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGR  437 (892)
Q Consensus       360 ~~Th~~T~~fle~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkilL~~--~~~i~~~P~GHGdIy~aL~~sGlLd~l~~~Gi  437 (892)
                       +||++|++||++|+|||++++||+||+|+++||+++++|++++++  +++++|+||||||||+||+++|+||+|+++|+
T Consensus       196 -~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~  274 (615)
T PLN02830        196 -DTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGK  274 (615)
T ss_pred             -chhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCC
Confidence             799999999999999999999999999999999998889999987  88999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCcccc-ChhHHHHHHhhhhcCCceeEEEeeecCCCCcCceEEEEeecCCCccccceEEEEecccCccC--
Q 002690          438 KGATVRQVSNVVAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFG--  514 (892)
Q Consensus       438 kyi~V~qVDN~La~v-DP~il~flG~~~~~~~d~~~ksvvRK~~~~EkVGvL~~~~~~dGk~~~~~~vVEYsEl~~~~--  514 (892)
                      ||+|||||||+|+++ ||   +|+|+|+.++++|++++| +| .+.|++|++|+.++.||++  +++||||+|++++.  
T Consensus       275 ~yi~v~~vDN~L~~~Adp---~flG~~~~~~~d~~~kvv-~K-~~~E~vGvi~~~~~~dG~~--l~~vVEYse~~~ll~~  347 (615)
T PLN02830        275 KWVVFFQDTNGLVFKAIP---AALGVSATKGFDMNSLAV-PR-KAKEAIGAIAKLTHKDGRE--MVINVEYNQLDPLLRA  347 (615)
T ss_pred             EEEEEEeccchhhhcccH---HHhHHHHhcCCceEEEEE-EC-CCCcccceEEEEecCCCCe--eeEEEeecccCHHHHh
Confidence            999999999999999 88   688999999999999975 45 5789999999877789984  56999999999883  


Q ss_pred             --CCCCCCCCCCccccCccceeeeEEeHHHHHhhhcccccCCccccccccCCCceeecCCCCccccCcccccccchhhHh
Q 002690          515 --ITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIAD  592 (892)
Q Consensus       515 --~~~~~~~dg~l~S~F~aNInn~~fsL~fL~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~~~~~~rLE~~Mqdi~d  592 (892)
                        .++++..+++++|.|||||||+|++|++|++++++ +.+.+|++ +|||    |+|.++ +.++.++|||||||||++
T Consensus       348 a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~-~~~~lp~i-vNpK----~~d~~~-~v~q~~trle~~mq~f~~  420 (615)
T PLN02830        348 TGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAK-TGGVIEEF-VNPK----YKDATK-TAFKSPTRLECMMQDYPK  420 (615)
T ss_pred             ccCCCcccccccccccCCCCceeeEeeHHHHHHHHHh-CCCcccee-ccCc----ccCCCC-ceeecchHHHHHHHHHhh
Confidence              34566667888999999999999999999999985 88899985 5999    999774 588999999999999999


Q ss_pred             hhcccccccccccccccccceeeeeeccCCCchhhhhccccccccccccccccccCCCCCCCCCCccccccccCCCCCCc
Q 002690          593 NFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGS  672 (892)
Q Consensus       593 ~F~~~~~~~~~kv~f~~~~Rf~~fsPvKn~~~sa~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~tp~~~  672 (892)
                      .|..     ..+|||++++||.+|+||||++++|++|+++                   |+|++||+           ++
T Consensus       421 ~~~~-----~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~-------------------~~~~~~~~-----------s~  465 (615)
T PLN02830        421 TLPP-----SAKVGFTVFDNWLAYSPVKNSPADGAAKVPE-------------------GNPTHSAT-----------SG  465 (615)
T ss_pred             hcCc-----ccccCceecCchheeccccCChHHhhhhccc-------------------CCCccCcc-----------hh
Confidence            9954     4579999999999999999999999998875                   47888888           66


Q ss_pred             HHHHHHHHHHHHHHcCcccCccc----cCCccccCCCCeEEEeCCCccccHHHHhccc-CC-CCCCCCcEEEEEeceEEe
Q 002690          673 FLDILRNAYDILCQCHIKLPEIE----GNDKYIDDGPPYLILLHPALGLLWEVTRQKF-KG-GSVSKGSELQIEVAEFLW  746 (892)
Q Consensus       673 ~~di~~~~~~~L~~~g~~v~~~~----~~~~~~~~gP~~~i~l~P~~~~~~~~~~~k~-~~-gsis~~S~L~veG~~~~~  746 (892)
                      ++|||++++.+|+..|+.+.++.    .++.++..||+  |.|+|+|+++|+++++|| ++ ++|+++|+|+|+|+++||
T Consensus       466 e~d~y~~~~llL~~s~~~~~~~~~~~~~~~~~~~~~P~--I~L~p~f~~~~~~~~~k~~~~~~si~~~s~L~v~G~~~~~  543 (615)
T PLN02830        466 EMAIYGANCLILRKAGADVEEPVEDVVFNGIEVEVGPR--IVLKPAFALTFSELKKKVAPGSVKISQRSTLVLEGADIVI  543 (615)
T ss_pred             hHHHHHHHHHHHHhcCCccccCccccccCCcccCCCCe--EEECchhhhHHHHHHHHhcCCCCcccCCCeEEEEeeeEEe
Confidence            99999999999999888776543    36778888995  999999999999999999 76 489999999999999999


Q ss_pred             eceEEEeeEEEEeccCCCCceecCCCccceecccccceEEEeeeEEeeCceeeecCCC--------ccccccceeeeEEE
Q 002690          747 RNVQLDGSLIIVAENVMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDN--------TYWKHDVQWFEALK  818 (892)
Q Consensus       747 ~~v~ldGslvI~a~~~~g~~~~~~~g~~i~~~~~~~~~~~~~~~~V~N~G~~~~~~~~--------~~w~~~~~r~e~~~  818 (892)
                      +||+|||+|+|.|+  .|+                  +|+|+|+.|+|+||+|.+++.        .+++..+.|.|..+
T Consensus       544 ~~v~LdG~viI~a~--~~~------------------~~~i~g~~v~N~g~~~~~~~~~~~~~~~~~irg~~~~~~e~~~  603 (615)
T PLN02830        544 ENLSLDGALVVRAV--PGA------------------EVTVGGLRVKNKGWTWEPVDKGTSAPEEIRIRGFVIKKVETAE  603 (615)
T ss_pred             cCeEEEEEEEEEcC--CCC------------------eEEecCeEEecCCcEEEecCCCCCcchhhhhcceeEeeeeeEE
Confidence            99999999999998  444                  889999999999999999643        48899999999999


Q ss_pred             EEEecCceeE
Q 002690          819 VILHGNAEFE  828 (892)
Q Consensus       819 i~~~g~~ef~  828 (892)
                      +++.-++.|.
T Consensus       604 ~~~~~~g~~~  613 (615)
T PLN02830        604 LVFDKPGKYT  613 (615)
T ss_pred             EEecCCCcee
Confidence            9999988874

>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase	Back alignment and domain information

>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose	Back alignment and domain information

>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional	Back alignment and domain information

>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase	Back alignment and domain information

>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2	Back alignment and domain information

>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	Back alignment and domain information

>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose	Back alignment and domain information

>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes	Back alignment and domain information

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional	Back alignment and domain information

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional	Back alignment and domain information

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases	Back alignment and domain information

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2	Back alignment and domain information

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	Back alignment and domain information

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional	Back alignment and domain information

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars	Back alignment and domain information

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit	Back alignment and domain information

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional	Back alignment and domain information

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase	Back alignment and domain information

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional	Back alignment and domain information

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional	Back alignment and domain information

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional	Back alignment and domain information

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional	Back alignment and domain information

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	Back alignment and domain information

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional	Back alignment and domain information

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional	Back alignment and domain information

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional	Back alignment and domain information

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry	Back alignment and domain information

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose	Back alignment and domain information

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family	Back alignment and domain information

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional	Back alignment and domain information

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form	Back alignment and domain information

>PLN02241 glucose-1-phosphate adenylyltransferase	Back alignment and domain information

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch	Back alignment and domain information

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase	Back alignment and domain information

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	Back alignment and domain information

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form	Back alignment and domain information

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase	Back alignment and domain information

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase	Back alignment and domain information

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional	Back alignment and domain information

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins	Back alignment and domain information

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide	Back alignment and domain information

>PRK10122 GalU regulator GalF; Provisional	Back alignment and domain information

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase	Back alignment and domain information

>TIGR00454 conserved hypothetical protein TIGR00454	Back alignment and domain information

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose	Back alignment and domain information

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	Back alignment and domain information

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional	Back alignment and domain information

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2	Back alignment and domain information

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional	Back alignment and domain information

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase	Back alignment and domain information

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional	Back alignment and domain information

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]	Back alignment and domain information

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Back alignment and domain information

>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []	Back alignment and domain information

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family	Back alignment and domain information

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function	Back alignment and domain information

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit	Back alignment and domain information

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline	Back alignment and domain information

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]	Back alignment and domain information

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	Back alignment and domain information

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional	Back alignment and domain information

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety	Back alignment and domain information

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family	Back alignment and domain information

>PLN02917 CMP-KDO synthetase	Back alignment and domain information

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B	Back alignment and domain information

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial	Back alignment and domain information

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide	Back alignment and domain information

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Back alignment and domain information

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production	Back alignment and domain information

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB	Back alignment and domain information

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed	Back alignment and domain information

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional	Back alignment and domain information

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity	Back alignment and domain information

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	Back alignment and domain information

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional	Back alignment and domain information

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	Back alignment and domain information

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase	Back alignment and domain information

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose	Back alignment and domain information

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]	Back alignment and domain information

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional	Back alignment and domain information

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional	Back alignment and domain information

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule	Back alignment and domain information

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional	Back alignment and domain information

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat	Back alignment and domain information

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional	Back alignment and domain information

>TIGR03584 PseF pseudaminic acid CMP-transferase	Back alignment and domain information

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		892
3oc9_A		405	Crystal Structure Of Putative Udp-N-Acetylglucosami		5e-07
1jvd_A		522	Crystal Structure Of Human Agx2 Complexed With Udpg		8e-04

>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine Pyrophosphorylase From Entamoeba Histolytica Length = 405

Back alignment and structure

Iteration: 1

Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 8/159 (5%) Query: 292 IYPLGGSADRLGLVDHETGE-CLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCIT 350 I P GG RLG +H G LP + + E L+R LQ Y + K + Sbjct: 39 ITPAGGQGSRLGF-EHPKGMFVLPFEIPKSIFQMTSERLLR-LQELASEY--SHQKNVMI 94 Query: 351 PVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPV 410 +MT+ + E I + + ++FG F Q ++P VD +G+ L + P Sbjct: 95 HWFLMTN--EETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDF-NGKILYEKKDKPY 151 Query: 411 CKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449 P GHG ++K D GI ++ ++ G K + V N++ Sbjct: 152 MAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNIL 190

PyMOL of 3oc9

>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac Length = 522

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		892
3ogz_A		630	UDP-sugar pyrophosphorylase; LEFT handed beta heli	8e-55
1jv1_A		505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	7e-42
2yqc_A		486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	1e-41
3oc9_A		405	UDP-N-acetylglucosamine pyrophosphorylase; structu	1e-32
2oeg_A		505	UTP-glucose-1-phosphate uridylyltransferase 2, put	9e-31
3gue_A		484	UTP-glucose-1-phosphate uridylyltransferase 2; pho	9e-29
3r3i_A		528	UTP--glucose-1-phosphate uridylyltransferase; ross	4e-25
2icy_A		469	Probable UTP-glucose-1-phosphate uridylyltransfera	4e-24
2i5k_A		488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	7e-24
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* Length = 630	Back alignment and structure

 Score =  200 bits (509), Expect = 8e-55
 Identities = 102/658 (15%), Positives = 171/658 (25%), Gaps = 128/658 (19%)

Query: 195 LEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESME 254
              E  +    LL  L      Y   GG+  Y     ELLA+   E      +       
Sbjct: 33  TVDECNERQIALLTDLYMFSNMY--PGGVAQYIRNGHELLARESEEVDFAALEMPPL--- 87

Query: 255 CQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLP 314
                  +     L + T         G   L +   +   GG  +RLG    +    + 
Sbjct: 88  -------IFEAPSLHRRTAERTALENAGTAMLCKTVFVLVAGGLGERLGYSSIKVSLPVE 140

Query: 315 AAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLR 374
            A       T L   +R  Q       ++ GK+   P  IMTS   + H+R   L   LR
Sbjct: 141 TAT----NTTYLAYYLRWAQ-------RVGGKE--VPFVIMTSD--DTHDRTLQL---LR 182

Query: 375 WFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKG------- 427
                  +  + +Q  V           +      + KP GHG +  L ++         
Sbjct: 183 ELQLEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVP 242

Query: 428 -----------IFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCK 476
                      +   +   G +     Q +N  A   +       +   H   + F    
Sbjct: 243 DSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGATITIP--ISLALSAEHSLDMNFTCIP 300

Query: 477 RSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRG-----PFSSNGLQADFPA 531
           R     E I +L   K   G   + ++ +EY  F +             S     + FP 
Sbjct: 301 RV--PKEPIGLLCRTKKNSGD-PWLVANVEYNVFAEVSRALNKDGGDEVSDPTGFSPFPG 357

Query: 532 NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHSVPGGRLECTMQNIA 591
           + N L   L+S        +       ++       Y D           R+E  MQ+IA
Sbjct: 358 SVNTLVFKLSSYV------DRLRESHGIVPEFINPKYSDE-TRRSFKKPARIESLMQDIA 410

Query: 592 DNFLNTYSSRCYKGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQCLNVRNCCNGTA 651
             F    S   Y+      + F  Y   +     A     + +                 
Sbjct: 411 LLF----SEDDYRVGGTVFERF-SYQPVKNSLEEAAGLVAQGN----------------- 448

Query: 652 GKSYDSNTFTRCLHQRTPDGSFLDILRNAYDILCQCHIKL-----PEIEGNDKYIDDGPP 706
                                           L    + L     PE+            
Sbjct: 449 -------------GAYCAATGEAAFYELQRRRLKAIGLPLFYSSQPEVTVAKDAFGVRLF 495

Query: 707 YLILLHPALGLLWEVTRQKFK-----GGSVSKGSELQIEVAEFLWRNVQLDGSLIIVAEN 761
            +I+L         +              + + S L +E    +  +++L G+L I    
Sbjct: 496 PIIVLDTVCASSGSLDDLARVFPTPEKVHIDQHSTLIVE-GRVIIESLELYGALTIRGPT 554

Query: 762 VMGSTRIADNGESILQYGYRCGRCKLNNVKVLNKGIDWDCGDNTYWKHDVQWFEALKV 819
                                    + N  V N G       +     D +  E  ++
Sbjct: 555 -----------------DSMALPHVVRNAVVRNAGWSVHAILSLCAGRDSRLSEVDRI 595

PyMOL of 3ogz

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Length = 505	Back alignment and structure

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Length = 486	Back alignment and structure

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} Length = 405	Back alignment and structure

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Length = 505	Back alignment and structure

>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Length = 484	Back alignment and structure

>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A Length = 528	Back alignment and structure

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Length = 488	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		892
d1jv1a_		501	c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphor	7e-39
d2icya2		378	c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2	4e-19

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Length = 501	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

 Score =  149 bits (378), Expect = 7e-39
 Identities = 89/475 (18%), Positives = 162/475 (34%), Gaps = 90/475 (18%)

Query: 132 LNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAK 191
           +N++ L     +  AGQEH+L    E  E++     +  LYA ++ ++            
Sbjct: 1   MNINDL--KLTLSKAGQEHLLRFWNELEEAQ-----QVELYAELQAMN------------ 41

Query: 192 DAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHE 251
                               E+  F+             +E   QS         ++V  
Sbjct: 42  ------------------FEELNFFFQKA----------IEGFNQSS------HQKNVDA 67

Query: 252 SMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPE--LGEIYPLGGSADRLGLVDHET 309
            ME    E+   +  D  Q   + ++    G+  + +  +  +   GG   RLG+     
Sbjct: 68  RMEPVPREVLGSATRDQDQLQAWESE----GLFQISQNKVAVLLLAGGQGTRLGVAY--- 120

Query: 310 GECLPAAMLP---YCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366
               P  M        +TL +     +   + +  K YG +CI P  IMTS      E  
Sbjct: 121 ----PKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTS--GRTMEST 174

Query: 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDK 426
                + ++FG  + +   F+Q ++PA+   DG+ ++         P G+G +++    +
Sbjct: 175 KEFFTKHKYFGLKKENVIFFQQGMLPAMS-FDGKIILEEKNKVSMAPDGNGGLYRALAAQ 233

Query: 427 GIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGIN 486
            I +     G     V  V N++           G  +  G   G    ++++  TE + 
Sbjct: 234 NIVEDMEQRGIWSIHVYCVDNILVKV--ADPRFIGFCIQKGADCGAKVVEKTN-PTEPVG 290

Query: 487 VLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELV 546
           V+      DG        +EY+E      T    SS+G       N    +  +     V
Sbjct: 291 VVCRV---DGV----YQVVEYSEISLA--TAQKRSSDGRLLFNAGNIANHFFTVPFLRDV 341

Query: 547 GSSENERSLPGMVLNTKKPIVYMDNFGDTH---SVPGGRLECTMQNIADNFLNTY 598
             +  E  L   V   +K I Y+D  G         G ++E  + +I        
Sbjct: 342 -VNVYEPQLQHHV--AQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFV 393

PyMOL of d1jv1a_

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		892
d1jv1a_		501	UDP-N-acetylglucosamine pyrophosphorylase {Human (	100.0
d2icya2		378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	100.0
d2icya1		83	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	98.66
d1yp2a2		307	Glucose-1-phosphate adenylyltransferase small subu	98.17
d1fxoa_		292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	97.98
d2cu2a2		268	Putative mannose-1-phosphate guanylyl transferase	97.89
d1mc3a_		291	RffH {Escherichia coli [TaxId: 562]}	97.84
d1lvwa_		295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	97.77
d1g97a2		250	N-acetylglucosamine 1-phosphate uridyltransferase	97.61
d1w77a1		226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	97.61
d1i52a_		225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	97.25
d2oi6a2		248	N-acetylglucosamine 1-phosphate uridyltransferase	97.22
d1vpaa_		221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	97.14
d1w55a1		205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	97.1
d1tzfa_		259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	97.09
d1vgwa_		226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	97.03
d1jyka_		229	CTP:phosphocholine cytidylytransferase LicC {Strep	96.92
d1e5ka_		188	Molybdenum cofactor biosynthesis protein MobA {Esc	96.57
d2dpwa1		231	Uncharacterized protein TTHA0179 {Thermus thermoph	94.96

>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=100.00  E-value=0  Score=737.15  Aligned_cols=433  Identities=20%  Similarity=0.239  Sum_probs=374.1

Q ss_pred             CCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             05899999999848632245566421001234479988787776530144678853201122154199999999999987
Q 002690          134 LDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEI  213 (892)
Q Consensus       134 ~~~~~L~~~L~a~GQeHll~~w~el~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~d~~~~ek~~Ll~qL~~l  213 (892)
                      |+.++|+++|.++||+|||++|+++                                     +++   +|++|++||..+
T Consensus         1 m~~~~l~~~L~~~gQ~HLl~~~~~l-------------------------------------~~~---ek~~L~~qL~~i   40 (501)
T d1jv1a_           1 MNINDLKLTLSKAGQEHLLRFWNEL-------------------------------------EEA---QQVELYAELQAM   40 (501)
T ss_dssp             CCHHHHHHHHHHTTCGGGGTTGGGS-------------------------------------CHH---HHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHCCHHHHHHHHHC-------------------------------------CHH---HHHHHHHHHHHC
T ss_conf             9889999999983939888556428-------------------------------------999---999999999855


Q ss_pred             HCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC--CCCCCHHHHHHHHHHHHHCCC--C
Q ss_conf             31145767066699999999970311224565434211112444334-599987--568780899999997651049--4
Q 002690          214 EQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGL--DLSQNTEYAAQAALWGIEGLP--E  288 (892)
Q Consensus       214 d~~Y~~~gGL~~y~~~a~~lL~~s~~~~~~~~~~~~~~~~~~p~~~~-~vP~g~--~ls~~~~~~~~~~~~Gle~L~--k  288 (892)
                      |.     +++..|++++.+++..++. ...            +++.+ ++|...  ....+.+...++++.|+++|+  |
T Consensus        41 d~-----~~l~~~~~~a~~~~~~~~~-~~~------------~~~~~~p~p~~~~~~~~~~~~~~~~~~~~G~~~i~~gk  102 (501)
T d1jv1a_          41 NF-----EELNFFFQKAIEGFNQSSH-QKN------------VDARMEPVPREVLGSATRDQDQLQAWESEGLFQISQNK  102 (501)
T ss_dssp             CH-----HHHHHHHHHHHHCC------------------------CCBCCCGGGEEETTTTGGGHHHHHHHHHHHHHTTC
T ss_pred             CH-----HHHHHHHHHHHHHHHHCCC-CCC------------CCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             99-----9999999999987653255-567------------53335679846504656686778999986189885498


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf             88999158865668999989881342654689998524999999999998867631992211299965999984699999
Q 002690          289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS  368 (892)
Q Consensus       289 vAvIlLAGGlGTRLG~~~PKgg~~lpV~l~p~sgkTlLql~ie~I~~lq~La~k~~G~~~~IPl~IMTS~~~~Th~~T~~  368 (892)
                      +|+|+||||||||||+++||+  ++||+++  +++||||+++++|+++|+++.++++..+.||||||||+  +||++|++
T Consensus       103 vavvllaGG~GTRLG~~~pK~--~~~v~~~--~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~--~T~~~t~~  176 (501)
T d1jv1a_         103 VAVLLLAGGQGTRLGVAYPKG--MYDVGLP--SRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSG--RTMESTKE  176 (501)
T ss_dssp             EEEEEECCCCCCTTSCSSCGG--GCCCCCT--TCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECT--TTHHHHHH
T ss_pred             EEEEEECCCCCCCCCCCCCCE--EEEECCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCH--HHHHHHHH
T ss_conf             899997898566678888963--0142567--88749999999999999999985378998549998884--37699999


Q ss_pred             HHHHHCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCEEEEEEECCCC
Q ss_conf             99980799889985499854971047259980302279975214699808879998349037999769539999907887
Q 002690          369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV  448 (892)
Q Consensus       369 fLe~n~yFGl~~~qV~~F~Q~~vP~l~~~dGkllL~~~~~i~~~P~GHGdIy~aL~~sGiLd~l~~~Gikyi~V~qVDN~  448 (892)
                      ||++|+|||+++++|++|+|+++||++ .+|+++++++++++|+|+||||||.+|+++|+|++|.++|++|++|+||||+
T Consensus       177 ~l~~~~~FGl~~~~v~~f~Q~~~P~~~-~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~  255 (501)
T d1jv1a_         177 FFTKHKYFGLKKENVIFFQQGMLPAMS-FDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNI  255 (501)
T ss_dssp             HHHHTGGGGSCGGGEEEEECCEEECEE-TTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBT
T ss_pred             HHHHCCCCCCCCCCEEEEEECCCCEEC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCEEEEEEECCCC
T ss_conf             999664348986756999835760587-8987135888861156799558999999788399999779979999956875


Q ss_pred             CCCC-CHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             5335-765799977333049943589962037997672389986427995006628998035586677789899998556
Q 002690          449 VAAT-DLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA  527 (892)
Q Consensus       449 La~v-DP~il~fiG~~~~~~~d~~~ksvvRK~~a~E~VGvL~~~~~~dGk~~~~~~vVEYsEl~~~~~~~~~~~dg~l~S  527 (892)
                      |+++ ||   .|+|+++..++++++++ ++|+.++|+||+||+   .||+    +++|||+|++++. ++...++|.+. 
T Consensus       256 l~~~~Dp---~~lG~~~~~~~~~~~kv-v~k~~~~e~~G~l~~---~dg~----~~vvEysel~~~~-~~~~~~~g~l~-  322 (501)
T d1jv1a_         256 LVKVADP---RFIGFCIQKGADCGAKV-VEKTNPTEPVGVVCR---VDGV----YQVVEYSEISLAT-AQKRSSDGRLL-  322 (501)
T ss_dssp             TCCTTCH---HHHHHHHHTTCSEEEEE-EECCSTTCSCCEEEE---ETTE----EEEECGGGSCHHH-HHCBCTTSSBS-
T ss_pred             CCCCCCH---HHHHHHHHCCCCEEEEE-EECCCCCCCCCEEEE---ECCE----EEEEEECCCCHHH-HHHCCCCCCCC-
T ss_conf             3244488---89999984446204799-876789863136998---8996----7998713588778-75016777312-


Q ss_pred             CCCC-CEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCC---CCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             5755-233567738889964023566886541012588840006999964---568411031002367520133445655
Q 002690          528 DFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTH---SVPGGRLECTMQNIADNFLNTYSSRCY  603 (892)
Q Consensus       528 ~Fp~-NInnl~fsL~fL~~vl~~~~~~~Lp~hIanpKKkIpy~D~~g~~~---~k~~~rLE~~Mqdi~d~F~~~y~~~~~  603 (892)
                       |++ |||||||+++||+++++. ....||+|++.  |||||+|.+|...   .++++|||+||||++..|        .
T Consensus       323 -f~~~Ni~~~~fsl~fl~~~~~~-~~~~l~~hva~--Kki~~~d~~~~~~~p~~~n~iklE~fifD~~~~~--------~  390 (501)
T d1jv1a_         323 -FNAGNIANHFFTVPFLRDVVNV-YEPQLQHHVAQ--KKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFA--------K  390 (501)
T ss_dssp             -SCEEEEEEEEEEHHHHHHHHHT-TGGGCCCEEEE--ECCCEECTTSCEECCSSCCEEEEECCGGGGGGGC--------S
T ss_pred             -CCCCCEEHEEEEHHHHHHHHHH-CCCCCCCEEEC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------C
T ss_conf             -5535500213579999999871-34477736855--6547617778763689986233799999999851--------6


Q ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             44222246212542014887524432012442100002335446899998778864222456779987199999999999
Q 002690          604 KGVEDDLDTFMVYNERRRVTSSAKKKRKRADMSLHQCLNVRNCCNGTAGKSYDSNTFTRCLHQRTPDGSFLDILRNAYDI  683 (892)
Q Consensus       604 kv~f~~~~Rf~~fsPvKn~~~sa~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~tp~~~~~di~~~~~~~  683 (892)
                      ++++.+++|+.+|+|+||+++..    .                                  .|||++++.|+++.+++|
T Consensus       391 ~~~~~~V~R~~eFaPvKN~~~~~----~----------------------------------~dsp~ta~~~l~~~~~~w  432 (501)
T d1jv1a_         391 KFVVYEVLREDEFSPLKNADSQN----G----------------------------------KDNPTTARHALMSLHHCW  432 (501)
T ss_dssp             SEEEEEECHHHHCCBCCSCTTSS----S----------------------------------SSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECHHHCCCCCCCCCCCC----C----------------------------------CCCHHHHHHHHHHHHHHH
T ss_conf             45999976243313245798777----8----------------------------------889899999999876899


Q ss_pred             HHHCCCCCCCC
Q ss_conf             98759203764
Q 002690          684 LCQCHIKLPEI  694 (892)
Q Consensus       684 L~~~g~~v~~~  694 (892)
                      |.++|+.+.+.
T Consensus       433 l~~aG~~~~~~  443 (501)
T d1jv1a_         433 VLNAGGHFIDE  443 (501)
T ss_dssp             HHHTTCEEBCT
T ss_pred             HHHCCCEEECC
T ss_conf             99869837334

PyMOL of d1jv1a_

>d2icya1 b.81.1.4 (A:384-466) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}	Back information, alignment and structure

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}	Back information, alignment and structure

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}	Back information, alignment and structure

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}	Back information, alignment and structure

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure