Citrus Sinensis ID: 002694
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 892 | 2.2.26 [Sep-21-2011] | |||||||
| Q51UJ9 | 1395 | Autophagy-related protein | N/A | no | 0.501 | 0.320 | 0.205 | 2e-10 |
| >sp|Q51UJ9|ATG11_MAGO7 Autophagy-related protein 11 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG11 PE=3 SV=3 | Back alignment and function desciption |
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Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 109/531 (20%), Positives = 211/531 (39%), Gaps = 84/531 (15%)
Query: 17 VHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPS 76
V I+ +G ++D + + ++ + + I N C+ + P K L +
Sbjct: 5 VLIAHSGQRLQIDTSRLTTLDEFRSAVSRSTSIPQN-----CIIALVPPGKALRPQAIQM 59
Query: 77 DDKEVFIFNKLRLQSNSPPPSPEQVDVLEVADPPPPALSQDPHPLDDAPDPALKALPSYE 136
+ KE+F+++ R+ P SP V LE+ P P A++ P+ + D ++L S++
Sbjct: 60 E-KEIFVYDS-RMTQTGAPGSPFPVK-LEIDLPKPYAITNPPNDIIDT-----RSLESWQ 111
Query: 137 RQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQERA-------VEVGRGNLEQYYRVIN 189
FR H + E CE + +E Q A ++ NLE R
Sbjct: 112 DLFRERRVWAHRLS-------EDCEGMEKEAHDQYEAMDNMLSCLDAAVANLESVVRATE 164
Query: 190 QNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSL-QTATCK------------- 235
Y D K + +Q ++DL+ + +++ RS+ + ++ + T K
Sbjct: 165 NKYEDLKKWAATEQTGYNDLVTRWEQNLGLARSIPISAAMVRLMTGKDVTGAKGRPSKQA 224
Query: 236 CLLDFVKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLPIKNLEM 295
L D V + RK + R+F +++ + + E L ++N E
Sbjct: 225 TLEDLVDLDCARKEGRRAPTVLRKFNARIADLE--------KAEGRL-------MQNFEE 269
Query: 296 MIKEHQRFINEQKSIM------QSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPM 349
+ E +R I+ +S+M L +D+ + V++ + S D + A +
Sbjct: 270 LEAEFRRVIS--RSVMGHSQDATQLLQDIQALAGKVENDYRTTMDYSTSTRDLLQA-SKI 326
Query: 350 YDVHDKSHLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPV 409
H + HLP + + +L + +N + + +M+ I VS + +Q
Sbjct: 327 AQTHTEKHLPSLHKRALEMDGMLRYAIKARNALALEQAEFMRSIADVSKL----DMQVKS 382
Query: 410 FREAMVRQDDI--FADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKRE 467
A+ +++ F L+L+ + Y A AE +RRK + LA +A ++
Sbjct: 383 LINAIAEDEELATFDYLRLIHQVPYMYAAFTAEAIRRKEWFDKVKTDSTTLANEMALFQD 442
Query: 468 VEVRRREEFLK--ANSVYIPRDILGSMGLYDTPNQCDVNIAPSDTNLLDID 516
E +RR ++ K ++ Y P + D N+ + NLL D
Sbjct: 443 EEAKRRRKWYKTIGDTSYGPESL-----------STDNNVPGLEVNLLGED 482
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Involved in cytoplasm to vacuole transport (Cvt) and pexophagy. Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 892 | ||||||
| 255574990 | 1145 | conserved hypothetical protein [Ricinus | 0.960 | 0.748 | 0.747 | 0.0 | |
| 224143908 | 1153 | predicted protein [Populus trichocarpa] | 0.969 | 0.750 | 0.728 | 0.0 | |
| 147866071 | 950 | hypothetical protein VITISV_042065 [Viti | 0.967 | 0.908 | 0.719 | 0.0 | |
| 225445782 | 1158 | PREDICTED: uncharacterized protein LOC10 | 0.967 | 0.745 | 0.718 | 0.0 | |
| 356498781 | 1154 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.753 | 0.716 | 0.0 | |
| 357479969 | 1154 | hypothetical protein MTR_4g130370 [Medic | 0.975 | 0.753 | 0.703 | 0.0 | |
| 449453950 | 1152 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.753 | 0.673 | 0.0 | |
| 224088338 | 1157 | predicted protein [Populus trichocarpa] | 0.968 | 0.746 | 0.694 | 0.0 | |
| 15234869 | 1148 | uncharacterized protein [Arabidopsis tha | 0.959 | 0.745 | 0.647 | 0.0 | |
| 297743689 | 1068 | unnamed protein product [Vitis vinifera] | 0.776 | 0.648 | 0.700 | 0.0 |
| >gi|255574990|ref|XP_002528401.1| conserved hypothetical protein [Ricinus communis] gi|223532189|gb|EEF33994.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1313 bits (3399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 657/879 (74%), Positives = 754/879 (85%), Gaps = 22/879 (2%)
Query: 1 MSCSITEVLVHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD 60
M+ SITE VHEGKLLV+++ENGHSFELDC+E + VEAVMR+IES + INFN+QLVLCLD
Sbjct: 1 MNSSITEGSVHEGKLLVYVAENGHSFELDCDETTLVEAVMRYIESVSEINFNEQLVLCLD 60
Query: 61 MKLEPQKLLSAYRLPSDDKEVFIFNKLRLQSNSPPPSPEQVDVLEVADPPPPALSQDPHP 120
MKLEPQ+ LSAY+LPS D+EVFIFN+ RLQ+NSP P+PEQ+D+LEVADPP P + DPHP
Sbjct: 61 MKLEPQRPLSAYKLPSSDREVFIFNRTRLQNNSPSPAPEQIDILEVADPPSPGCTHDPHP 120
Query: 121 LDDAPDPALKALPSYERQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQERAVEVGRGN 180
LDDA DPALKALPSYERQFRYHYHRGHAIY RT AK CER LREQKVQ RA++V RGN
Sbjct: 121 LDDALDPALKALPSYERQFRYHYHRGHAIYGRTHAKYAHCERFLREQKVQGRAIDVARGN 180
Query: 181 LEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDF 240
L+QYYR+I+QNY++FMKRY+QQ R+HS+LL N+ RD+EKLRS+KLHP+LQ T CL+DF
Sbjct: 181 LDQYYRMISQNYSEFMKRYTQQHRMHSELLVNYRRDLEKLRSIKLHPALQATTRTCLVDF 240
Query: 241 VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLPIKNLEMMIKEH 300
VKEE+LRK+ E CS+SHRQFE KVS+FKQ+F +VKR+VE+L RAS P+KNLE+ IKEH
Sbjct: 241 VKEENLRKAVENCSNSHRQFEKKVSEFKQMFGEVKRKVEDLFACRASFPLKNLELTIKEH 300
Query: 301 QRFINEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPR 360
Q+FINEQKSIMQSLSKDV+TVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDK+HLP+
Sbjct: 301 QKFINEQKSIMQSLSKDVNTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKNHLPK 360
Query: 361 MQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPVFREAMVRQDDI 420
M+AC RSI+KLL+FC+DKKNEMN+FVHNYMQKITYVSY+IKDAKLQFPVFREAMVRQDD+
Sbjct: 361 MEACGRSITKLLEFCKDKKNEMNIFVHNYMQKITYVSYIIKDAKLQFPVFREAMVRQDDL 420
Query: 421 FADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKAN 480
F DLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKA+
Sbjct: 421 FTDLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKAH 480
Query: 481 SVYIPRDILGSMGLYDTPNQCDVNIAPSDTNLLDIDISDLEVYAPEYLAGL-RKGEKPVN 539
S YIPRD+L +MGLYDTP+QCDVNIAP DTNLLDID+SDL+ YAPE+LAGL K EK +
Sbjct: 481 SSYIPRDVLAAMGLYDTPSQCDVNIAPFDTNLLDIDMSDLDRYAPEHLAGLPLKSEKLAS 540
Query: 540 VR-------DGSHSVEAEEIALDALDREDPEELHEGCELVEIAGTSKMEVENAKLKAELA 592
+R + SHS EAEEI+ D D++D EL EGCELVEIAGTSKMEVENAKLKAELA
Sbjct: 541 LRSSFSMSTESSHSAEAEEISADTHDKDD-HELLEGCELVEIAGTSKMEVENAKLKAELA 599
Query: 593 SAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCV 652
SA ALICSL E+EYESLDDSK+D +LKNAAE+TAEAL LKDEYGKH+Q+MLKAKQMQC+
Sbjct: 600 SAQALICSLGLELEYESLDDSKVDSLLKNAAERTAEALQLKDEYGKHLQSMLKAKQMQCL 659
Query: 653 SYEKRIQELEQRLSDQYLMKQKHSNGKDVSDFALLVEKADDCKPESSGGGETHMPCISTS 712
SYEKRIQELEQRLSDQYL QK S VSDF + KAD KPE +GGG TS
Sbjct: 660 SYEKRIQELEQRLSDQYLQGQKLSISNLVSDFDIPAAKADGSKPEVTGGG--------TS 711
Query: 713 EPMDEVSCVSNSFDAKLALLNRQPSKGREGVDENMLDSSGMLNPPLDSSMMEPHREELPI 772
EPMDEVSC+SNS D+KL LL RQPSKGREGVDENM+DSSGMLN LDS M EP REEL +
Sbjct: 712 EPMDEVSCISNSLDSKLGLLTRQPSKGREGVDENMMDSSGMLNTQLDSLMTEPQREELQV 771
Query: 773 NEKDGKYKMPGQLGMSMTNSSTAESMPEPHNILPCDATADSGLDPKVSSELVLKLQSALA 832
++KDGK K+ QLGMS+ NSSTAESMPE N+LP DAT ++ +S++VL+LQ AL
Sbjct: 772 SDKDGKDKLVAQLGMSLANSSTAESMPEAQNVLPSDATVEAK-----TSDVVLELQRALD 826
Query: 833 DKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQV 871
+KSDQL E + KLKA ME+V +L RELEM +KLLDESQ+
Sbjct: 827 EKSDQLGEIENKLKAAMEDVTVLTRELEMSRKLLDESQM 865
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143908|ref|XP_002325118.1| predicted protein [Populus trichocarpa] gi|222866552|gb|EEF03683.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|147866071|emb|CAN78826.1| hypothetical protein VITISV_042065 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225445782|ref|XP_002273616.1| PREDICTED: uncharacterized protein LOC100267388 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356498781|ref|XP_003518227.1| PREDICTED: uncharacterized protein LOC100794018 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357479969|ref|XP_003610270.1| hypothetical protein MTR_4g130370 [Medicago truncatula] gi|355511325|gb|AES92467.1| hypothetical protein MTR_4g130370 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449453950|ref|XP_004144719.1| PREDICTED: uncharacterized protein LOC101216810 [Cucumis sativus] gi|449518296|ref|XP_004166178.1| PREDICTED: uncharacterized LOC101216810 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224088338|ref|XP_002308415.1| predicted protein [Populus trichocarpa] gi|222854391|gb|EEE91938.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|15234869|ref|NP_194808.1| uncharacterized protein [Arabidopsis thaliana] gi|5725443|emb|CAB52452.1| putative protein [Arabidopsis thaliana] gi|7269980|emb|CAB79797.1| putative protein [Arabidopsis thaliana] gi|332660409|gb|AEE85809.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297743689|emb|CBI36572.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 892 | ||||||
| TAIR|locus:2131944 | 1148 | AT4G30790 [Arabidopsis thalian | 0.959 | 0.745 | 0.609 | 1.9e-276 | |
| ZFIN|ZDB-GENE-081124-1 | 1939 | myhb "myosin, heavy chain b" [ | 0.295 | 0.136 | 0.205 | 7.1e-06 | |
| MGI|MGI:2445022 | 917 | A630007B06Rik "RIKEN cDNA A630 | 0.335 | 0.326 | 0.250 | 7.4e-06 | |
| ZFIN|ZDB-GENE-000322-5 | 1938 | myhz1.1 "myosin, heavy polypep | 0.291 | 0.134 | 0.228 | 8e-06 | |
| ZFIN|ZDB-GENE-070705-73 | 1937 | myhz1.2 "myosin, heavy polypep | 0.291 | 0.134 | 0.228 | 1e-05 | |
| ZFIN|ZDB-GENE-070705-74 | 1937 | myhz1.3 "myosin, heavy polypep | 0.291 | 0.134 | 0.228 | 1e-05 | |
| ZFIN|ZDB-GENE-020604-1 | 1935 | myhz2 "myosin, heavy polypepti | 0.291 | 0.134 | 0.224 | 2.1e-05 | |
| ZFIN|ZDB-GENE-061027-393 | 1943 | vmhcl "ventricular myosin heav | 0.297 | 0.136 | 0.214 | 2.5e-05 | |
| ZFIN|ZDB-GENE-060531-50 | 1933 | myha "myosin, heavy chain a" [ | 0.291 | 0.134 | 0.224 | 3.3e-05 | |
| ZFIN|ZDB-GENE-030131-5336 | 1936 | wu:fd14a01 "wu:fd14a01" [Danio | 0.292 | 0.134 | 0.218 | 4.1e-05 |
| TAIR|locus:2131944 AT4G30790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2642 (935.1 bits), Expect = 1.9e-276, Sum P(2) = 1.9e-276
Identities = 534/876 (60%), Positives = 656/876 (74%)
Query: 1 MSCSITEVLVHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD 60
MS S TE +GKLL+ ++ENGHSFE C+E + VE+VMRF+ES +GI +DQL+L LD
Sbjct: 1 MSGSFTESFADDGKLLLCVAENGHSFEFQCSETTSVESVMRFVESVSGIALSDQLLLSLD 60
Query: 61 MKLEPQKLLSAYRLPSDDKEVFIFNKLRLQSNSPPPSPEQVDVLEVADPPPPALSQXXXX 120
MKLEPQKLLSA+ LP+ D+EVF+FNK LQSNS PPSPE VD+ +VAD PPA
Sbjct: 61 MKLEPQKLLSAFGLPASDREVFVFNKAMLQSNSHPPSPEDVDLQDVADALPPASLHEHHP 120
Query: 121 XXXXXXXXXXXXXSYERQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQERAVEVGRGN 180
YERQFRYH+H+G IY T K E CERL REQKVQ+RAVEV N
Sbjct: 121 LDDASDPALKALPLYERQFRYHFHKGRTIYNCTVVKHENCERLTREQKVQQRAVEVATRN 180
Query: 181 LEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDF 240
LEQYYRVI QN+ +FMKRY Q R+HSDLL NFGRDIEKLRS K+HP LQT + KCLLDF
Sbjct: 181 LEQYYRVIYQNFLEFMKRYKHQHRLHSDLLMNFGRDIEKLRSAKIHPYLQTESRKCLLDF 240
Query: 241 VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLPIKNLEMMIKEH 300
VKE++L+K+ E C+SSHRQFENK++QF+Q+F +VKR+VEEL RASL +KNLE+ +K+H
Sbjct: 241 VKEDNLKKAVENCASSHRQFENKIAQFQQMFVEVKRKVEELFACRASLSMKNLEVTVKDH 300
Query: 301 QRFINEQKSIMQSLSKDVSTVKKXXXXXXXXXXXXXXRPHDAVSALGPMYDVHDKSHLPR 360
+RFI+E+KSIMQSLSKDV+TVKK RPHDAVSALGPMY+VHDK+HLP+
Sbjct: 301 ERFIDEEKSIMQSLSKDVNTVKKLVDDCMSSQVSSSLRPHDAVSALGPMYEVHDKNHLPK 360
Query: 361 MQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYVIKDAKLQFPVFREAMVRQDDI 420
MQAC SIS+LLDFC++KKNEMN FVH YMQKITYV+Y+IKDAKLQFPVFREAMVRQDD+
Sbjct: 361 MQACYNSISELLDFCKNKKNEMNNFVHGYMQKITYVTYIIKDAKLQFPVFREAMVRQDDL 420
Query: 421 FADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKXXXXXXXXXXFLKAN 480
FADLKLVRG+GPAYRACLAEVVRRKASMKLYMGMAGQLAE+LA K FLK +
Sbjct: 421 FADLKLVRGVGPAYRACLAEVVRRKASMKLYMGMAGQLAEKLAMKRETEVRKREEFLKTH 480
Query: 481 SVYIPRDILGSMGLYDTPNQCDVNIAPSDTNLLDIDISDLEVYAPEYLAGLRKG----EK 536
++PRD+L SMGLYDTP QCDVN+AP DT+LL+I+ISD++ YAPE+L GL +
Sbjct: 481 GPFVPRDVLASMGLYDTPTQCDVNVAPYDTSLLNIEISDVDRYAPEFLVGLHSKIASLKS 540
Query: 537 PVNVR-DGSHSVEAEEIALDALDREDPEELHEGCELVEIAGTSKMEVENAKLKAELASAI 595
+ + D S S E EEI +D D+++ +++ EL+EIAGTSKMEVENAKLKA+LASAI
Sbjct: 541 SLTMSGDSSLSAEPEEIGIDTFDKDNFDDILAASELIEIAGTSKMEVENAKLKADLASAI 600
Query: 596 ALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYE 655
+ ICSL P+ EYE LD+S+++ VLKNAA+KTAEAL KDEY KH+ MLK KQM C SYE
Sbjct: 601 SRICSLGPQFEYEVLDESEVENVLKNAADKTAEALQAKDEYEKHLLLMLKEKQMHCDSYE 660
Query: 656 KRIQELEQRLSDQYLMKQKHSNGKDVSDFALLVEKADDCKPESSGGGETHMPCISTSEPM 715
KRI+ELEQRLSD+YL Q+H+N KDVS L+ EK + K E+S E + +S SEPM
Sbjct: 661 KRIRELEQRLSDEYLQGQRHNN-KDVSGLNLMHEKVSEYKAEASSDVEGNKTHVSGSEPM 719
Query: 716 DEVSCVSNSFDAKLALLNRQPSKGREGVDENMLDSSGMLNPPLDSSMMEPHREELPINEK 775
DEVSCVSN L ++QP K REG+DENM+DSS +L+ PLDSSM+E + NEK
Sbjct: 720 DEVSCVSN-------LTSKQPCKAREGMDENMVDSSQVLSQPLDSSMLESQQN----NEK 768
Query: 776 DGKYKMPGQLGMSMTNSSTAESMPEPHNILPCDATADSGLDPKVSSELVLKLQSALADKS 835
GK G++G+ ++NSSTAES P L + GLD K S +++L+L++ L +KS
Sbjct: 769 GGKDSEAGEMGVFLSNSSTAES---PQKSLDDNVATGRGLDAKDSGDIILELRNELMEKS 825
Query: 836 DQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQV 871
++LSE ++KL MEEV L RELE QKLL+ESQ+
Sbjct: 826 NKLSEMESKLNGAMEEVSNLSRELETNQKLLEESQM 861
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| ZFIN|ZDB-GENE-081124-1 myhb "myosin, heavy chain b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| MGI|MGI:2445022 A630007B06Rik "RIKEN cDNA A630007B06 gene" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-000322-5 myhz1.1 "myosin, heavy polypeptide 1.1, skeletal muscle" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-070705-73 myhz1.2 "myosin, heavy polypeptide 1.2, skeletal muscle" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-070705-74 myhz1.3 "myosin, heavy polypeptide 1.3, skeletal muscle" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-020604-1 myhz2 "myosin, heavy polypeptide 2, fast muscle specific" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-061027-393 vmhcl "ventricular myosin heavy chain-like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-060531-50 myha "myosin, heavy chain a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-5336 wu:fd14a01 "wu:fd14a01" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 892 | |||
| pfam04108 | 408 | pfam04108, APG17, Autophagy protein Apg17 | 7e-05 |
| >gnl|CDD|217899 pfam04108, APG17, Autophagy protein Apg17 | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 73/353 (20%), Positives = 129/353 (36%), Gaps = 58/353 (16%)
Query: 191 NYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATC--KCLLDFVKEEH--- 245
+ Q A +++LRS + + + K L DF+ E+
Sbjct: 67 RTEWGQSVFVNLQNELDAADARLESTLDRLRSTIVPLAFRPKGEEPKTLYDFISEDGVEL 126
Query: 246 ----LRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTR----ASLPIKNLEMMI 297
L+ + + Q +N ++QF +K E+L+N R +
Sbjct: 127 LRDNLKIYIKEVPAIRAQLDNILNQFDSDLRSLK---EQLINKRLKDVTLPFQSSFGADT 183
Query: 298 KEHQRFINEQKSIMQSLSKD-VSTVKKLV---DDCLSCQLSSSLRPHDAVSALGPMYDV- 352
I+ S + SL + ++ L D C++ + P D + + +V
Sbjct: 184 TSSNPLISTIPSELNSLEHELADLLESLTNHFDQCVTAVKHTEGDPLDD-AEYDELLEVL 242
Query: 353 -HDKSHLPRMQACDRSISKLLDFCQD--KKNEMNV--FVHNYMQKITYVSYVIKDAKLQF 407
+D + LP + K L D + NE V F+ ++M KI + K+ +
Sbjct: 243 KNDAAELP-------DVVKELHTVIDEIENNEKRVKKFLSSHMSKIEELHSATKELLEEL 295
Query: 408 PVFREAMVRQDDIFAD---------LKLVRGIGP-------------AYRACLAEVVRRK 445
++E + R IFAD + + I +Y+ L EV RR+
Sbjct: 296 EKYKERLPRYLAIFADIRALWEDFKEPIQQYIQELSELCEFYDNFLNSYKGLLLEVERRR 355
Query: 446 ASMKLYMGMAGQLAERLATKREVEVRRREEFLKANSVYIPRDILGSMGLYDTP 498
A K + E+L +E + +RR++FL Y+P DI G D P
Sbjct: 356 AVRKKMEKILKFCNEQLDKLQEEDQKRRQQFLAEYGDYLPEDIWP--GEIDDP 406
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Apg17 is required for activating Apg1 protein kinases. Length = 408 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 892 | |||
| KOG4572 | 1424 | consensus Predicted DNA-binding transcription fact | 100.0 | |
| PF04108 | 412 | APG17: Autophagy protein Apg17 ; InterPro: IPR0072 | 99.93 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 97.51 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 97.17 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 97.16 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 97.06 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 97.03 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 97.02 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 96.99 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 96.94 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 96.88 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 96.85 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 96.84 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 96.84 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 96.77 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 96.77 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 96.76 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 96.69 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 96.66 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 96.64 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 96.62 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 96.5 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 96.27 | |
| cd01769 | 69 | UBL Ubiquitin-like domain of UBL. UBLs function by | 96.24 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 96.19 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 96.18 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 95.82 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 95.14 | |
| KOG0004 | 156 | consensus Ubiquitin/40S ribosomal protein S27a fus | 93.76 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 93.1 | |
| KOG0003 | 128 | consensus Ubiquitin/60s ribosomal protein L40 fusi | 93.07 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 92.78 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 92.76 | |
| TIGR00601 | 378 | rad23 UV excision repair protein Rad23. All protei | 92.51 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 90.8 | |
| PF15450 | 531 | DUF4631: Domain of unknown function (DUF4631) | 90.51 | |
| KOG0005 | 70 | consensus Ubiquitin-like protein [Cell cycle contr | 90.12 | |
| cd00196 | 69 | UBQ Ubiquitin-like proteins. Ubiquitin homologs; I | 89.79 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 88.72 | |
| cd01795 | 107 | USP48_C USP ubiquitin-specific protease. The USP ( | 87.62 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 86.73 | |
| cd01815 | 75 | BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC | 86.06 | |
| cd01801 | 77 | Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N- | 85.21 | |
| PF04740 | 204 | LXG: LXG domain of WXG superfamily; InterPro: IPR0 | 84.58 | |
| KOG0001 | 75 | consensus Ubiquitin and ubiquitin-like proteins [P | 83.4 | |
| KOG0010 | 493 | consensus Ubiquitin-like protein [Posttranslationa | 82.71 | |
| KOG0011 | 340 | consensus Nucleotide excision repair factor NEF2, | 82.59 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 81.54 | |
| cd01788 | 119 | ElonginB Ubiquitin-like domain of Elongin B. Elong | 80.83 |
| >KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=369.47 Aligned_cols=463 Identities=18% Similarity=0.223 Sum_probs=374.0
Q ss_pred cCCceeEecCC-CCCCHHHHHHHHHHHhCCCCCCeEEEecCC-cccccccccccc-CCCCCceEEEEeccccCCCCCCCC
Q 002694 21 ENGHSFELDCN-ENSPVEAVMRFIESAAGINFNDQLVLCLDM-KLEPQKLLSAYR-LPSDDKEVFIFNKLRLQSNSPPPS 97 (892)
Q Consensus 21 htG~~l~~d~~-~f~SVd~LK~~Ia~~t~Ip~~~QILLts~G-~llk~~~L~~y~-l~~de~eIFVFDRr~l~~~~~~~~ 97 (892)
++|+.+.||.. ..+++.+||..|+..+|+..+++.+|..+| ....++.|+.|+ +|++++|||+||+.....+.++..
T Consensus 2 drGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnkem~lcde~~a~ 81 (1424)
T KOG4572|consen 2 DRGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNKEMGLCDENHAG 81 (1424)
T ss_pred CCCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEeehhhccccCCCCC
Confidence 68999999997 588999999999999999999999999877 678899999998 788899999999998876655443
Q ss_pred CCcccccccCCCCCCCCCCCCCCCCCCCCh--hhhcchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002694 98 PEQVDVLEVADPPPPALSQDPHPLDDAPDP--ALKALPSYERQFRYHYHRGHAIYIRTQAKIEMCERLLREQKVQERAVE 175 (892)
Q Consensus 98 ~e~l~lp~~~~~p~p~~~~~~~pL~ds~~p--~lraL~sye~lf~~~~~~A~Al~~~a~~~~e~c~~Lv~Ei~vq~raL~ 175 (892)
|.. . |+. ...+|+.+. ..-.+|+-...+..+..+|..++..|......|++|+++.+++++||.
T Consensus 82 pdt-T----yiF---------qmedDae~kaeesL~mpa~fhivae~~elA~e~~eVaaelcqfCagLVhdehf~HkGWa 147 (1424)
T KOG4572|consen 82 PDT-T----YIF---------QMEDDAEDKAEESLKMPAPFHIVAELPELAKECREVAAELCQFCAGLVHDEHFLHKGWA 147 (1424)
T ss_pred CCc-e----eee---------ecccHHHHHHHHHHcCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 320 0 011 123333221 112355656777777899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHhhCCCCCccccc---------------------
Q 002694 176 VGRGNLEQYYRVINQNYNDFMK---RYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQT--------------------- 231 (892)
Q Consensus 176 aAvaNLe~~~~~lek~f~~f~~---~~~~l~~~~~~LL~~we~dLe~L~~IpihpaL~~--------------------- 231 (892)
|.++||++.+....++...|.. .+.++.++...+|-++...++.|++||+...|.+
T Consensus 148 AiiaNLddcsnk~dKl~fKFe~i~Sk~~e~IEdidlkLlhlgdaVeqlakIpllecltrhsyreclgrldelPeeedsek 227 (1424)
T KOG4572|consen 148 AIIANLDDCSNKMDKLGFKFELIHSKSEELIEDIDLKLLHLGDAVEQLAKIPLLECLTRHSYRECLGRLDELPEEEDSEK 227 (1424)
T ss_pred HHHHhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHhcchHhhhhhhhHHHhhcccccCchhhhcch
Confidence 9999999999988877666654 5667778888899999999999999988765532
Q ss_pred -------------c----------------------------------------------------------cccccccc
Q 002694 232 -------------A----------------------------------------------------------TCKCLLDF 240 (892)
Q Consensus 232 -------------e----------------------------------------------------------~~~TL~D~ 240 (892)
. -..+|.||
T Consensus 228 AelkrSTel~inPD~~rttneslltsfpksvehvspdtadaesgkeirescqstvhqqdettidtkdgdlpffn~sLfD~ 307 (1424)
T KOG4572|consen 228 AELKRSTELPINPDEKRTTNESLLTSFPKSVEHVSPDTADAESGKEIRESCQSTVHQQDETTIDTKDGDLPFFNCSLFDF 307 (1424)
T ss_pred HhhccccccCCCCCCccccchhhhhcCcccccccCCccccchhhhHHHHHhhhhhhhcccccccccCCCcccccchHHHH
Confidence 0 02789999
Q ss_pred cch----hHHHHHHHHHHhHHHHHHHHHHH-----HH--------HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHH
Q 002694 241 VKE----EHLRKSAETCSSSHRQFENKVSQ-----FK--------QIFDDVKRRVEELLNTRASLPIKNLEMMIKEHQRF 303 (892)
Q Consensus 241 Vd~----e~Lrk~ae~c~~s~~~f~~Kv~e-----L~--------~~i~eIk~~vd~L~~~~~~~sl~~Le~~m~e~~~l 303 (892)
|.. ..+....+.|....++++.++.. +. +.++.+++.-+++. .|+.+++.+.++
T Consensus 308 IamaD~~adldgL~~kcfdkirqLd~qia~pfiaecqqt~akldNQemkafKGiedRf~---------aLd~miaSC~rl 378 (1424)
T KOG4572|consen 308 IAMADPEADLDGLPDKCFDKIRQLDEQIAIPFIAECQQTHAKLDNQEMKAFKGIEDRFS---------ALDFMIASCERL 378 (1424)
T ss_pred HHhcCCccchhhhhHHHHHHHHhhchhhhhHHHHHHHHHHHhhcchhhHhhhcHHHHHH---------HHHHHHHHHHHH
Confidence 975 35666666666666665555432 22 22444554444443 499999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhhhhhccccCCCCccccccccCchhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002694 304 INEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPRMQACDRSISKLLDFCQDKKNEMN 383 (892)
Q Consensus 304 i~eq~siaq~L~~Die~Vkkl~dd~~~~qlssS~~~~davs~Ls~m~~~H~k~lLpsL~~~~~eL~d~l~~~~~~KN~L~ 383 (892)
+++++.+++++..++-..-++.+ .+.|++++.+|...++ .|+++..++.++.+.|.++|.++.
T Consensus 379 vnEqKeLahgflAn~keaekikD----------------an~LPdic~eHan~ll-iifeN~refldikqkcdqaKQEia 441 (1424)
T KOG4572|consen 379 VNEQKELAHGFLANIKEAEKIKD----------------ANKLPDICEEHANCLL-IIFENFREFLDIKQKCDQAKQEIA 441 (1424)
T ss_pred HHHHHHHHHHHHHhhhhcccccc----------------cccCChHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999988877766544 5689999999998876 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHhhhhHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002694 384 VFVHNYMQKITYVSYV-IKDAKLQFPVFREAMVRQDDIFADLKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERL 462 (892)
Q Consensus 384 ~~~~~~Lr~IS~IQs~-I~~vk~~L~~l~e~L~~~~d~F~~L~~V~~LP~aYga~LiEvVRRRew~~~~~~~a~~LAEeL 462 (892)
+++|.||.|..++... ..+..+.++.|.-.++....+.+.+.++++.|.+|...|+|+||||-|...|..|++.+...-
T Consensus 442 kNLhtRlk~ccfqml~adqdgek~~allel~ieale~hmdiieairdaP~lYclaVsEiVRRklfike~eEWaga~skd~ 521 (1424)
T KOG4572|consen 442 KNLHTRLKGCCFQMLDADQDGEKDIALLELKIEALEIHMDIIEAIRDAPILYCLAVSEIVRRKLFIKELEEWAGAHSKDC 521 (1424)
T ss_pred HHHHhhhhhhheeehhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999998876653 444556666666666666678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhhhccCCCCCCCCcccccCC--CCCCCCccCCHHHHh---hhhh
Q 002694 463 ATKREVEVRRREEFLKANSVYIPRDILGSMGLYDTPNQCDVNIA--PSDTNLLDIDISDLE---VYAP 525 (892)
Q Consensus 463 a~lreeE~kRRekf~K~~g~~LP~dL~~~~GL~d~PP~~ev~~~--~~D~~Lp~I~r~Dle---~yi~ 525 (892)
+.|.+.|.+.|+.|.|.|.++|++.+|. |++|+.|.|-++.+ .||+.||+|..+||. .++|
T Consensus 522 aqf~eaEekkREqfGk~fkKhFLha~ff--~gfDn~P~~fckak~eKfDcdLPdIa~edik~Lqd~cP 587 (1424)
T KOG4572|consen 522 AQFSEAEEKKREQFGKKFKKHFLHALFF--GGFDNLPEFFCKAKLEKFDCDLPDIAKEDIKDLQDACP 587 (1424)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhhh--cccccCCHHHhcCChhhcCCCCchhhHHHHHHHHHhCh
Confidence 9999999999999999999999999995 77776555555555 599999999998775 4566
|
|
| >PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
| >cd01769 UBL Ubiquitin-like domain of UBL | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
| >TIGR00601 rad23 UV excision repair protein Rad23 | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF15450 DUF4631: Domain of unknown function (DUF4631) | Back alignment and domain information |
|---|
| >KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd00196 UBQ Ubiquitin-like proteins | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >cd01795 USP48_C USP ubiquitin-specific protease | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP | Back alignment and domain information |
|---|
| >cd01801 Tsc13_N Ubiquitin-like domain of Tsc13 | Back alignment and domain information |
|---|
| >PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein | Back alignment and domain information |
|---|
| >KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
| >KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
| >KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >cd01788 ElonginB Ubiquitin-like domain of Elongin B | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 892 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-13 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 7e-17
Identities = 110/732 (15%), Positives = 213/732 (29%), Gaps = 225/732 (30%)
Query: 189 NQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDFVKE----- 243
+ ++ DF + Q + D+L+ F CK + D K
Sbjct: 3 HHHHMDF--ETGEHQYQYKDILSVFEDAFVD-----------NFDCKDVQDMPKSILSKE 49
Query: 244 --EHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLPIKNLEMMIKEHQ 301
+H+ S + S + R F +S+ +++ V++ VEE+L N +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEM---VQKFVEEVLR-------INYK------- 92
Query: 302 RFINEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPRM 361
F+ +++ + S + ++ + R ++ V K ++ R+
Sbjct: 93 -FLMSP---IKTEQRQPSMMTRMYIEQRD-------RLYNDN-------QVFAKYNVSRL 134
Query: 362 QACDRSISKLLDFCQDKKNEMNVFVHNYMQ---KITYVSYVIKDAKLQ----FPVF---- 410
Q + LL + + + NV + + K V K+Q F +F
Sbjct: 135 QPYLKLRQALL---ELRPAK-NVLIDG-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 411 -REAMVRQDDIFADL-KLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREV 468
+ + L KL+ I P + + R + L +R +
Sbjct: 190 KNCN--SPETVLEMLQKLLYQIDPNWTS-------RSDHSSNIKLRIHSIQAEL--RRLL 238
Query: 469 EVRRREEFLKANSVYIPRD-----ILGSMGLYDTPNQCDVNIAPSDTNLLDIDISDLEVY 523
+ + E N + + + + L C + + + D
Sbjct: 239 KSKPYE-----NCLLVLLNVQNAKAWNAFNL-----SCKILLTTRFKQVTDF-------- 280
Query: 524 APEYLAGLRKGEKPVN-VRDGSHSVEAEEIALDALDREDPEEL-HEGCE----LVEIAGT 577
L+ ++ E + + L LD P++L E + I
Sbjct: 281 ----LSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAE 335
Query: 578 SKME----------VENAKLKAELASAIALICSLCP-EME--YESL----DDSKL-DGVL 619
S + V KL + S++ L P E ++ L + + +L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLN---VLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 620 --------KNAAEKTAEALH---LKDEYGK-------HIQAMLKAKQMQCVSYEKRIQEL 661
K+ LH L ++ K I LK K L
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-------EYAL 445
Query: 662 EQRLSDQYLMKQKHSNGKDVSDFALLVEKADDCKPESSGG------GETHMPCISTSEPM 715
+ + D Y + + + DD P G H+ I E M
Sbjct: 446 HRSIVDHYNIPKTFDS--------------DDLIPPYLDQYFYSHIGH-HLKNIEHPERM 490
Query: 716 DEVSCVSNSF---DAKLALLNRQPSKGREGVDENMLDSSGMLNPPLDSSMMEPHREELPI 772
V F + K+ S +LN +P+ I
Sbjct: 491 TLFRMVFLDFRFLEQKI-----------RHDSTAWNASGSILNTLQQLKFYKPY-----I 534
Query: 773 NEKDGKYKMPGQLGMSMTNSSTAESMPEPHNILPCDATADSGLDPKVSSELVLKLQSALA 832
+ D KY+ + + E N++ T +L+ + AL
Sbjct: 535 CDNDPKYER--LVNAILDFLPKIE-----ENLICSKYT-----------DLL---RIALM 573
Query: 833 DKSDQLSETQTK 844
+ + + E K
Sbjct: 574 AEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 892 | |||
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 97.89 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 97.82 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 97.69 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 97.68 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 97.65 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 97.61 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 97.6 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 97.52 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 97.47 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 97.46 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.44 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 97.41 | |
| d1uela_ | 95 | Ubiquitin-like domain of Rad23 homolog B (Hhr23B) | 97.4 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 97.4 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 97.38 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 97.28 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 97.14 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 97.07 | |
| d1wx9a1 | 73 | Large proline-rich protein BAT3 {Human (Homo sapie | 97.06 | |
| d2faza1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 97.06 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 97.04 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 96.87 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 96.82 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 96.79 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 96.68 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 96.58 | |
| d1wgga_ | 96 | Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M | 96.52 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 96.34 | |
| d1v2ya_ | 105 | Ubiquitin-like protein 3300001g02rik {Mouse (Mus m | 96.11 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 96.02 | |
| d1wgha_ | 116 | Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu | 95.52 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 94.99 | |
| d1wgda_ | 93 | Homocysteine-responsive endoplasmic reticulum-resi | 94.02 | |
| d1se9a_ | 101 | Hypothetical protein At3g01050 {Thale cress (Arabi | 91.72 | |
| d1wiaa_ | 95 | Ubiquitin-like protein bab25500 (2010008E23Rik) {M | 89.58 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 83.56 |
| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: Ubiquitin-like family: Ubiquitin-related domain: hypothetical D7wsu128e protein species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.89 E-value=1.9e-05 Score=51.81 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=70.6
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 88754322357738999921774457507889897999999999819997796888169733421011113478999608
Q 002694 2 SCSITEVLVHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEV 81 (892)
Q Consensus 2 ~~~~~~~~~~~~~L~V~~AhtG~~l~~d~~~f~SVe~LK~~Ia~~t~Ip~~~QILLts~G~llk~~~L~~y~l~~de~eI 81 (892)
|++.+.+-+....+.|-+-++|+.+.+++....+|.+||+-|+..++||+++|.|+.. |++....+|.+|++. +...|
T Consensus 5 s~~~~~~~~~~~~i~v~V~~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~-g~l~D~~tL~~~~I~-~gs~i 82 (95)
T d1v86a_ 5 SSGDAGGGVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYK-GLVPEDKTLREIKVT-SGAKI 82 (95)
T ss_dssp CCCCCCCCCCCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSS-SBCCSSSBHHHHCCC-TTEEE
T ss_pred CCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEEC-CCCCCCCCHHHCCCC-CCCEE
T ss_conf 5676666777647999999899999999899993999999999876779637788814-666687828997999-99999
Q ss_pred EEEECC
Q ss_conf 998554
Q 002694 82 FIFNKL 87 (892)
Q Consensus 82 YVFDRr 87 (892)
+|.-+.
T Consensus 83 ~lvgs~ 88 (95)
T d1v86a_ 83 MVVGST 88 (95)
T ss_dssp EECCSS
T ss_pred EEEECC
T ss_conf 998259
|
| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|