Citrus Sinensis ID: 002695

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890--
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHcccEEEEEcEEEcccccccccccccccEEEEEEEccccccccccccccEEcccccEEEcccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHcHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHcccccHHHHHcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccccccccccccccccEccccccEcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccEEEEEEEEEccccccccHHHHcccccEEEEEEcccccEc
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKvydtdnanqKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTkafskeglgqqpktdpkekakSETRDWLNNLVSELESQIDSFEAELEGltvkkgktrpprlthlETSITRHKAHIMKLELILRLldndelspeqvNDVKDLLEDYVERnqddfeefsdvdelyhllpldkvesledlvtigppglvkgapalSLKASLAASASQMPATVISTHQQVTSVqeqgedtasqdsnsdvaartppakssgvgstastpavgpatpisinvpaqtlsnasntspvlpgsssvrgvfdntgpisssppvnltsstkeedvgnfpgrrsspsltdvrvmgrgglssqpsssiplssatavpsngnlgavplvsdVAKRNILGAeerlgssgmvqsLVSPLSNRMILSqaakgndgtgsidsnnagetvamagrvftpsmgmqwrtgnsfqnqnepgqfrgrteiapdQREKFLQRLQQVQQQGHsnllgmplggnkqfssqqnpllqqfnsqgssisaqaglglgvqapgmnsvtsaslqqqpnpihqqssqqtlmsggqkdadvshlkveepqqpqnlpeestpesasspglgknliheddlkapyaidsstgvsasltepaqvvrdtdlspgqplqssqpsgglgvigrrsvsdlgaigdslsgatvssggmhdqMYNMQMLESAfyklpqpkdserarsyiprhpavtppsypqvqapivsnpafwerlsldsygtdTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvandefeqgtyvyfdfhianddlqhgwcQRIKTEFTFEynyledeliv
mgasrklqgeiDRVLKKVQEGVDVFDSIWNkvydtdnanqkekFEADLKKEIKKLQRYRDQIKtwiqsseikdkkvsaSYEQALVDARKLIEREMERFKiceketktkafskeglgqqpktdpkekaksETRDWLNNLVSELESQIDSFEAELegltvkkgktrpprlthletsitrhkaHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEdtasqdsnsdvaartppakssgvgstastpaVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNtgpisssppvnltsstkeedvgnfpgrrsspsltdvRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGaeerlgssgmVQSLVSPLSNRMILSQAAkgndgtgsidsnnagETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPqqpqnlpeestpesaSSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgvIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTwfqrheepkvANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGapalslkaslaasasQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGlssqpsssiplssATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFlqrlqqvqqqGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVeepqqpqnlpeestpesasspGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDlspgqplqssqpsgglgVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
***********DRVLKKVQEGVDVFDSIWNKVYDTDN*************EIKKLQRYRDQIKTWIQS***********YEQALVDARKLIEREMERFKIC********************************************************************HLETSITRHKAHIMKLELILRLLDNDELS**QVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGA*****************************************************************************************************************************************************************************PLVSDV******************************************************************************************************************************************************************************************************************************************************************************************************************************************************VQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE***
******L*GEIDRVLKKVQEGVDVFDSIWN*********************IKKLQRYRDQIK*************SASYEQALVDARKLIEREMERFKIC*****************************TRDWLNNLVSELESQIDS**************************ITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVE*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************SDLGAI***************************FYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQ***************TYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELI*
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKE******************RDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVIS*******************************************AVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSS****************FPGRRSSPSLTDVRVMGR*****************AVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSV******************************VSHLKV**********************LGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDT****************LGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
****RKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDL************************************************************************************************************************************************************************************************************************************************************P*****W**G****************EIAPDQREKFLQRLQQVQQQGHSNLLGM*************P*****NS************L*V**PG*N***************************************************************************************************************************DLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQxxxxxxxxxxxxxxxxxxxxxIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETxxxxxxxxxxxxxxxxxxxxxxxxxxxxKGKTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESLEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query892 2.2.26 [Sep-21-2011]
O75175753 CCR4-NOT transcription co yes no 0.266 0.316 0.511 4e-62
Q8K0V4751 CCR4-NOT transcription co yes no 0.266 0.316 0.507 9e-62
O13870640 General negative regulato yes no 0.484 0.675 0.337 5e-54
Q12514560 General negative regulato yes no 0.321 0.512 0.353 3e-37
P06102836 General negative regulato no no 0.238 0.254 0.403 5e-37
Q52JK6603 Probable NOT transcriptio N/A no 0.179 0.265 0.287 2e-10
Q9NZN8540 CCR4-NOT transcription co no no 0.099 0.164 0.34 4e-10
Q8C5L3540 CCR4-NOT transcription co no no 0.099 0.164 0.34 5e-10
Q9FPW4614 Probable NOT transcriptio no no 0.077 0.112 0.376 2e-07
P06100191 General negative regulato no no 0.141 0.659 0.329 6e-07
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1 Back     alignment and function desciption
 Score =  240 bits (612), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 131/256 (51%), Positives = 170/256 (66%), Gaps = 18/256 (7%)

Query: 1   MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
           M   RKLQGEIDR LKKV EGV+ F+ IW K+++  NANQKEK+EADLKKEIKKLQR RD
Sbjct: 1   MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60

Query: 61  QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
           QIKTW+ S+EIKDK+        L+D RKLIE +MERFK+ E+ETKTKA+SKEGLG   K
Sbjct: 61  QIKTWVASNEIKDKR-------QLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQK 113

Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVK-----KGKTRPPRLTHLETSI 175
            DP +K K E   WL N +  L  Q+D FE+E+E L+V+       K +  R+  L+  I
Sbjct: 114 VDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHI 173

Query: 176 TRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQD-DFEEFSDVDELYHLLP 234
            +H+ H+  LE ILR+LDND +  + +  +KD +E YV+ +QD DFEE    + LY  L 
Sbjct: 174 EKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEE---NEFLYDDLD 230

Query: 235 LDKVESLEDLVTIGPP 250
           L+ +   + LV   PP
Sbjct: 231 LEDIP--QALVATSPP 244
The CCR4-NOT complex functions as general transcription regulation complex.
Homo sapiens (taxid: 9606)
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1 Back     alignment and function description
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2 Back     alignment and function description
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT5 PE=1 SV=1 Back     alignment and function description
>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT3 PE=1 SV=2 Back     alignment and function description
>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1 Back     alignment and function description
>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=2 SV=2 Back     alignment and function description
>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2 Back     alignment and function description
>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC36 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query892
297739742897 unnamed protein product [Vitis vinifera] 0.994 0.988 0.796 0.0
255568948889 conserved hypothetical protein [Ricinus 0.987 0.991 0.775 0.0
359481840888 PREDICTED: uncharacterized protein LOC10 0.984 0.988 0.782 0.0
224125888886 predicted protein [Populus trichocarpa] 0.985 0.992 0.780 0.0
356560386884 PREDICTED: uncharacterized protein LOC10 0.980 0.989 0.731 0.0
449446768900 PREDICTED: uncharacterized protein LOC10 0.996 0.987 0.718 0.0
356559538892 PREDICTED: uncharacterized protein LOC10 0.989 0.989 0.713 0.0
224144772895 predicted protein [Populus trichocarpa] 0.988 0.985 0.741 0.0
356571684882 PREDICTED: uncharacterized protein LOC10 0.974 0.985 0.720 0.0
357508635901 CCR4-NOT transcription complex subunit [ 0.973 0.963 0.699 0.0
>gi|297739742|emb|CBI29924.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1387 bits (3589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/902 (79%), Positives = 796/902 (88%), Gaps = 15/902 (1%)

Query: 1   MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
           MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
Sbjct: 1   MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60

Query: 61  QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
           QIKTWIQSSEIKDKKVSASYEQAL+DARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
Sbjct: 61  QIKTWIQSSEIKDKKVSASYEQALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120

Query: 121 TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKA 180
           TDPKEKAKSETRDWLN +V ELESQIDSFEAE+EGL+VKKGKTRPPRLTHLETSI RHKA
Sbjct: 121 TDPKEKAKSETRDWLNTVVGELESQIDSFEAEIEGLSVKKGKTRPPRLTHLETSIARHKA 180

Query: 181 HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVES 240
           HIMKLELILRLLDNDELSPEQVNDVKD L+DYVERNQ+DFEEFSDVD+LY+ LPLDKVES
Sbjct: 181 HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDDLYNSLPLDKVES 240

Query: 241 LEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNS 300
           LEDLVTIG PGLVKGAPALSLK SL  + +Q+PATV S  QQ TS+QEQ E+TASQDSNS
Sbjct: 241 LEDLVTIGAPGLVKGAPALSLKNSL--TPTQIPATVTSPLQQSTSIQEQSEETASQDSNS 298

Query: 301 DVAARTPPAKSSGVGSTA-STPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFD 359
           ++  RTPPAK+S +GS+A STP    ATPI +NV A  LS AS    +LP S+SVRGV +
Sbjct: 299 EIGPRTPPAKNSVIGSSASSTPTGSHATPIPLNVSAHNLS-ASPAPTILPSSTSVRGVLE 357

Query: 360 NTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD---VRVMGRGGLSSQPSSSIPLSS 416
           N G   SS PVN++SS KEE++ +FPGRRSSP+L +   VR +GRG  SSQPS+S+PLSS
Sbjct: 358 NAGTAISS-PVNVSSSAKEEEIASFPGRRSSPALVETGLVRGIGRGVPSSQPSTSVPLSS 416

Query: 417 ATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGT 476
              +PSNG LGAVP  +D++KR+ LGA+ERLG  GMVQ LVSPLSNRMIL Q AK NDGT
Sbjct: 417 GITIPSNGGLGAVPSANDMSKRSTLGADERLGGGGMVQPLVSPLSNRMILPQTAKTNDGT 476

Query: 477 GSIDSNNAGETVAMAGRVFTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQ 534
           G  DS++ GE   +AGRVF+PS+  GMQWR G+SFQNQNE GQFRGRTEI  DQ+EKFLQ
Sbjct: 477 GLADSSSVGEAAVIAGRVFSPSVVPGMQWRPGSSFQNQNESGQFRGRTEITLDQKEKFLQ 536

Query: 535 RLQQVQQQGHSNLLGMP--LGGN-KQFSS-QQNPLLQQFNSQGSSISAQAGLGLGVQAPG 590
           RLQQVQQQ  S +LGMP   GGN KQFS+ QQNPLLQQFNSQ SS+S Q GLG+GVQAPG
Sbjct: 537 RLQQVQQQTQSTILGMPPLSGGNHKQFSAQQQNPLLQQFNSQSSSVSPQVGLGVGVQAPG 596

Query: 591 MNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASS 650
           +N+VTSA++QQQP  IHQQS+QQ L+S G KDADV H+K E+ QQ QN+ ++ST ESA S
Sbjct: 597 LNTVTSAAIQQQPGSIHQQSNQQALLSTGPKDADVGHVKAEDQQQQQNVSDDSTMESAPS 656

Query: 651 PGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIG 710
             LGKNL++EDDLKAPYA+D+S GVS SLTEP+QV RDTDLSPGQP+QS+QPSG LGVIG
Sbjct: 657 -SLGKNLMNEDDLKAPYAMDTSAGVSGSLTEPSQVPRDTDLSPGQPVQSNQPSGSLGVIG 715

Query: 711 RRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAV 770
           RRS+SDLGAIGD+LSG+ V+SGGMHDQ+YN+QMLE+AFYKLPQPKDSERAR+Y PRHPAV
Sbjct: 716 RRSISDLGAIGDTLSGSAVNSGGMHDQLYNLQMLEAAFYKLPQPKDSERARNYTPRHPAV 775

Query: 771 TPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH 830
           TPPSYPQVQAPIV+NPAFWERL LD++GTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH
Sbjct: 776 TPPSYPQVQAPIVNNPAFWERLGLDTFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH 835

Query: 831 RKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDEL 890
           RKYNTWFQRHEEPKVA DEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDEL
Sbjct: 836 RKYNTWFQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDEL 895

Query: 891 IV 892
           IV
Sbjct: 896 IV 897

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568948|ref|XP_002525444.1| conserved hypothetical protein [Ricinus communis] gi|223535257|gb|EEF36934.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359481840|ref|XP_003632676.1| PREDICTED: uncharacterized protein LOC100253711 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224125888|ref|XP_002319700.1| predicted protein [Populus trichocarpa] gi|222858076|gb|EEE95623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356560386|ref|XP_003548473.1| PREDICTED: uncharacterized protein LOC100783415 [Glycine max] Back     alignment and taxonomy information
>gi|449446768|ref|XP_004141143.1| PREDICTED: uncharacterized protein LOC101206210 [Cucumis sativus] gi|449509538|ref|XP_004163617.1| PREDICTED: uncharacterized LOC101206210 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356559538|ref|XP_003548056.1| PREDICTED: uncharacterized protein LOC100819202 [Glycine max] Back     alignment and taxonomy information
>gi|224144772|ref|XP_002325409.1| predicted protein [Populus trichocarpa] gi|222862284|gb|EEE99790.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356571684|ref|XP_003554004.1| PREDICTED: uncharacterized protein LOC100785965 [Glycine max] Back     alignment and taxonomy information
>gi|357508635|ref|XP_003624606.1| CCR4-NOT transcription complex subunit [Medicago truncatula] gi|124365585|gb|ABN09819.1| Not CCR4-Not complex component, N-terminal; tRNA-binding arm [Medicago truncatula] gi|355499621|gb|AES80824.1| CCR4-NOT transcription complex subunit [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query892
TAIR|locus:2172389845 AT5G18230 [Arabidopsis thalian 0.420 0.443 0.707 2.1e-213
UNIPROTKB|O75175753 CNOT3 "CCR4-NOT transcription 0.483 0.572 0.386 4.5e-111
UNIPROTKB|F6XXD6753 CNOT3 "Uncharacterized protein 0.501 0.593 0.369 7.3e-111
UNIPROTKB|E1BCS1744 CNOT3 "Uncharacterized protein 0.395 0.474 0.422 6.4e-110
MGI|MGI:2385261751 Cnot3 "CCR4-NOT transcription 0.521 0.619 0.364 1.3e-109
UNIPROTKB|E2R344710 CNOT3 "Uncharacterized protein 0.381 0.478 0.420 2.7e-109
RGD|1304771751 Cnot3 "CCR4-NOT transcription 0.566 0.672 0.356 3.5e-109
FB|FBgn0033029844 l(2)NC136 "lethal (2) NC136" [ 0.355 0.375 0.441 3.9e-108
ZFIN|ZDB-GENE-040927-6901 cnot3a "CCR4-NOT transcription 0.534 0.529 0.370 2.2e-105
ZFIN|ZDB-GENE-030131-5838908 cnot3b "CCR4-NOT transcription 0.417 0.409 0.407 1.2e-89
TAIR|locus:2172389 AT5G18230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1310 (466.2 bits), Expect = 2.1e-213, Sum P(2) = 2.1e-213
 Identities = 278/393 (70%), Positives = 310/393 (78%)

Query:     1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK--VYDTDNANQKEKFEADLKKEIKKLQRY 58
             MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK  VYDTDN NQKEKFEADLKKEIKKLQRY
Sbjct:     1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY 60

Query:    59 RDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ 118
             RDQIKTWIQSSEIKDKKVSASYEQ+LVDARKLIE+EMERFKICEKETKTKAFSKEGLGQQ
Sbjct:    61 RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQ 120

Query:   119 PKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRH 178
             PKTDPKEKAKSETRDWLNN+VSELESQIDSFEAELEGL+VKKGKTRPPRLTHLETSITRH
Sbjct:   121 PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRH 180

Query:   179 KAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKV 238
             K HI+KLELILRLLDNDELSPEQVNDVKD L+DYVERNQDDF+EFSDVDELY  LPLD+V
Sbjct:   181 KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV 240

Query:   239 ESLEDLVTIGPPGLVKGXXXXXXXXXXXXXXXQMPATVISTHQQVTSVQEQGEDTASQDS 298
             E LEDLVT GP  LVKG               Q+ +  + TH Q     E+ EDT+  DS
Sbjct:   241 EGLEDLVTAGP--LVKGTPLSMKSSLAASAS-QVRSISLPTHHQ-----EKTEDTSLPDS 292

Query:   299 NSDVAARTPPAKS-SGVGSTASTPAVGPATPISINVPAQTLSNASNT-SPVLPGSSSVRG 356
             ++++  +TPP K+ +G+ S  STPA G   P S+NVPA  +SN S T S  +P  +S+  
Sbjct:   293 SAEMVPKTPPPKNGAGLHSAPSTPAGG--RP-SLNVPAGNVSNTSVTLSTSIPTQTSIES 349

Query:   357 VFDNTGPISSSPP--VNLTSSTKEEDVGNFPGR 387
             +  +  P+++       L S      V + P R
Sbjct:   350 M-GSLSPVAAKEEDATTLPSRKPPSSVADTPLR 381
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS
UNIPROTKB|O75175 CNOT3 "CCR4-NOT transcription complex subunit 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F6XXD6 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCS1 CNOT3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2385261 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R344 CNOT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1304771 Cnot3 "CCR4-NOT transcription complex, subunit 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0033029 l(2)NC136 "lethal (2) NC136" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040927-6 cnot3a "CCR4-NOT transcription complex, subunit 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5838 cnot3b "CCR4-NOT transcription complex, subunit 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query892
pfam04065233 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not 8e-95
pfam04153131 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family 2e-56
COG5665548 COG5665, NOT5, CCR4-NOT transcriptional regulation 8e-53
COG5665548 COG5665, NOT5, CCR4-NOT transcriptional regulation 1e-31
COG5601172 COG5601, CDC36, General negative regulator of tran 2e-15
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.003
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.004
>gnl|CDD|217869 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex component Back     alignment and domain information 
 Score =  297 bits (762), Expect = 8e-95
 Identities = 134/240 (55%), Positives = 170/240 (70%), Gaps = 14/240 (5%)

Query: 3   ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQI 62
           A+RKLQ EID++LKKV EG++ FDSI+ K+ +  NA+QKEK E+DLK+EIKKLQR RDQI
Sbjct: 2   AARKLQQEIDKLLKKVAEGLESFDSIYEKLENATNASQKEKLESDLKREIKKLQRLRDQI 61

Query: 63  KTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTD 122
           KTW+ SS+IKDK        +L++ RKLIE  MERFK  EKE KTKAFSKEGL    K D
Sbjct: 62  KTWLSSSDIKDK-------DSLLENRKLIETAMERFKAVEKEMKTKAFSKEGLSAASKLD 114

Query: 123 PKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTV--KKGKTRPP---RLTHLETSITR 177
           PKEK K+E  D+L+N + EL  QI+  EAE+E L+V  KK K       R+  LE  + R
Sbjct: 115 PKEKEKAEVCDFLSNTIDELNKQIELLEAEVESLSVQRKKRKADAAKQERIAELEELLER 174

Query: 178 HKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDK 237
           HK HI KLELILRLL+N EL PEQV+D+K+ +E YVE NQ+   +F + + +Y  L LD+
Sbjct: 175 HKFHISKLELILRLLENGELDPEQVDDIKEDIEYYVESNQE--PDFVEDETIYDDLNLDE 232

Length = 233
>gnl|CDD|217931 pfam04153, NOT2_3_5, NOT2 / NOT3 / NOT5 family Back     alignment and domain information
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>gnl|CDD|227888 COG5601, CDC36, General negative regulator of transcription subunit [Transcription] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 892
KOG2150575 consensus CCR4-NOT transcriptional regulation comp 100.0
COG5665548 NOT5 CCR4-NOT transcriptional regulation complex, 100.0
PF04065233 Not3: Not1 N-terminal domain, CCR4-Not complex com 100.0
PF04153134 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR 100.0
COG5601172 CDC36 General negative regulator of transcription 99.97
KOG2151312 consensus Predicted transcriptional regulator [Tra 99.58
KOG2151 312 consensus Predicted transcriptional regulator [Tra 99.35
cd07674261 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A 95.6
PHA02562562 46 endonuclease subunit; Provisional 95.41
KOG3771460 consensus Amphiphysin [Intracellular trafficking, 94.84
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 94.48
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 93.86
PF00038312 Filament: Intermediate filament protein; InterPro: 93.76
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 93.19
KOG09961293 consensus Structural maintenance of chromosome pro 92.73
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 92.26
PF03357171 Snf7: Snf7; InterPro: IPR005024 This is a family o 92.02
cd07673269 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A 91.8
KOG4438446 consensus Centromere-associated protein NUF2 [Cell 91.75
cd07648261 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am 91.56
PRK04863 1486 mukB cell division protein MukB; Provisional 90.96
cd00632105 Prefoldin_beta Prefoldin beta; Prefoldin is a hexa 90.9
PRK04778569 septation ring formation regulator EzrA; Provision 90.85
KOG0963629 consensus Transcription factor/CCAAT displacement 90.81
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 90.68
COG11961163 Smc Chromosome segregation ATPases [Cell division 90.68
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 90.36
KOG2911439 consensus Uncharacterized conserved protein [Funct 90.29
KOG09961293 consensus Structural maintenance of chromosome pro 89.89
COG11961163 Smc Chromosome segregation ATPases [Cell division 88.81
PHA02562562 46 endonuclease subunit; Provisional 88.7
PRK02224880 chromosome segregation protein; Provisional 88.68
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 88.66
TIGR02338110 gimC_beta prefoldin, beta subunit, archaeal. Chape 88.39
PF07139302 DUF1387: Protein of unknown function (DUF1387); In 87.98
cd07647239 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/ 87.93
cd07653251 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B 87.74
PRK03918880 chromosome segregation protein; Provisional 87.48
PTZ00464211 SNF-7-like protein; Provisional 87.23
KOG10291118 consensus Endocytic adaptor protein intersectin [S 86.88
PRK02224880 chromosome segregation protein; Provisional 86.8
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 86.6
PRK11637428 AmiB activator; Provisional 86.59
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 85.94
PRK09343121 prefoldin subunit beta; Provisional 85.78
PF04799171 Fzo_mitofusin: fzo-like conserved region; InterPro 85.55
PRK03918880 chromosome segregation protein; Provisional 85.53
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 85.43
COG4942420 Membrane-bound metallopeptidase [Cell division and 85.26
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 85.13
KOG09331174 consensus Structural maintenance of chromosome pro 85.05
PF13166712 AAA_13: AAA domain 84.97
PRK01156895 chromosome segregation protein; Provisional 84.55
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 84.53
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 84.51
PHA0042588 DNA packaging protein, small subunit 84.29
PRK05771646 V-type ATP synthase subunit I; Validated 84.0
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 83.73
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 83.68
PTZ00446191 vacuolar sorting protein SNF7-like; Provisional 83.61
PF05833455 FbpA: Fibronectin-binding protein A N-terminus (Fb 83.21
KOG2129552 consensus Uncharacterized conserved protein H4 [Fu 82.94
TIGR006061311 rad50 rad50. This family is based on the phylogeno 82.85
cd00176213 SPEC Spectrin repeats, found in several proteins i 82.84
PF09745127 DUF2040: Coiled-coil domain-containing protein 55 82.77
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 82.43
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 82.14
PF03148384 Tektin: Tektin family; InterPro: IPR000435 Tektin 81.96
PTZ00464211 SNF-7-like protein; Provisional 81.85
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 81.75
cd07598211 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of 81.72
cd07672240 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin 81.65
PF12729181 4HB_MCP_1: Four helix bundle sensory module for si 81.44
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 81.33
KOG06121317 consensus Rho-associated, coiled-coil containing p 81.19
COG1293564 Predicted RNA-binding protein homologous to eukary 80.88
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 80.86
PRK11637428 AmiB activator; Provisional 80.81
PLN03229762 acetyl-coenzyme A carboxylase carboxyl transferase 80.79
PRK03947140 prefoldin subunit alpha; Reviewed 80.54
PRK01156895 chromosome segregation protein; Provisional 80.4
PRK09039343 hypothetical protein; Validated 80.27
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 80.06
PF10174775 Cast: RIM-binding protein of the cytomatrix active 80.01
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=6.5e-118  Score=988.27  Aligned_cols=567  Identities=45%  Similarity=0.658  Sum_probs=390.2

Q ss_pred             ccccchhhhHHHHhHhHHHhHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhHHHHHHhhccccccccccchhhH
Q 002695            2 GASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYE   81 (892)
Q Consensus         2 aa~RKLQ~EIDr~lKKV~EGve~Fd~i~eK~~~a~n~nQKEKlE~DLKKEIKKLQR~RDQIKtW~~s~eIKDK~~~a~~~   81 (892)
                      |++||||+|||||||||+|||++||+||+||++++|.|||||||+|||||||||||||||||||++++|||||+      
T Consensus         1 ~~~RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~------   74 (575)
T KOG2150|consen    1 MAKRKLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKD------   74 (575)
T ss_pred             CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHH------
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 002695           82 QALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKG  161 (892)
Q Consensus        82 ~~L~e~RK~IE~~MErFK~vEKesKtKafSkEGL~~~~k~DP~ekek~E~~~wL~~~IdeL~~QiE~~EaEiE~Ls~KK~  161 (892)
                       .|++||||||.+|||||+|||||||||||||||+.++|+||+|++|.|+++||+++|++|++|+|.||+|         
T Consensus        75 -~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~---------  144 (575)
T KOG2150|consen   75 -SLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAE---------  144 (575)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence             9999999999999999999999999999999999999999999999999999999999999999999994         


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhhhhHHHHHHHhCCCCccccCCCcccccCCCCCCcccc
Q 002695          162 KTRPPRLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVESL  241 (892)
Q Consensus       162 K~~~~r~~~le~~ierhk~Hi~kLE~lLRlLdN~~ldpe~V~~IKddIeyYvesnqddf~ef~dde~iYd~L~Lde~~~~  241 (892)
                              +|+..|+||+|||.+||+|||+|+|++++|+.|++++|||.||||+|||  +||.++++||++|+|++.+..
T Consensus       145 --------~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqd--pdF~e~e~iYd~l~le~~e~~  214 (575)
T KOG2150|consen  145 --------ELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQD--PDFLEDETIYDDLNLEELEAS  214 (575)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccC--chhhhhhHHhhccCchhhhhh
Confidence                    7999999999999999999999999999999999999999999999999  356668999999999999998


Q ss_pred             ccccccCCCCCcCCCchhhhhhhhccccCCCCcccccccccCCcccccCcccccCCCCCCcccCCCCCCCCCCCCCC-CC
Q 002695          242 EDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTA-ST  320 (892)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~k~~~~~s~~-~~  320 (892)
                      .++++.+...          +.+.+.+                              +++++++..+.+++....+. .-
T Consensus       215 ~~~~~~~~~~----------~~~~~~s------------------------------~~~~e~~e~~~~~~~k~~~~~~~  254 (575)
T KOG2150|consen  215 MDAVAPGSSL----------NNKKMAS------------------------------ETDSEPIESYVEMSNKEPAENVD  254 (575)
T ss_pred             HhhhcCCccc----------hhhhhhh------------------------------hccccccccccccCCCCcccccc
Confidence            8888765411          2222211                              01111111111111110000 00


Q ss_pred             CCCCCCCccccccCccccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCcccc-ccc
Q 002695          321 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDV-RVM  399 (892)
Q Consensus       321 p~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~k~~~~~~~p~~~~~p~~~~~-r~~  399 (892)
                      ......++...++.                  +...+.       +.-|++                    .+.+. ++ 
T Consensus       255 ~~d~~d~~i~~n~~------------------~~s~~~-------~~tp~~--------------------~~~~~~~~-  288 (575)
T KOG2150|consen  255 DADPADSPIPPNLE------------------SASQQI-------SGTPTA--------------------VVTDVHRE-  288 (575)
T ss_pred             ccCCCCCCCCcCCC------------------Chhhhc-------CCCCcc--------------------cccccccc-
Confidence            00000111111000                  000000       000000                    00000 00 


Q ss_pred             cCCCCCCCCCCCcCCCCCcccCCCCCCCCCCchhhhhhhhccccccccCCCCCcccccccCcccccccccccCCCCCCcc
Q 002695          400 GRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSI  479 (892)
Q Consensus       400 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~q~~~s~~~~~~~~~~~~~~~~~~~~~  479 (892)
                            +  ....|+..+  .++.                                                        
T Consensus       289 ------t--~~~~~~~~~--~~s~--------------------------------------------------------  302 (575)
T KOG2150|consen  289 ------T--HNGPPIGID--ASSS--------------------------------------------------------  302 (575)
T ss_pred             ------c--cCCCccccC--CCcc--------------------------------------------------------
Confidence                  0  000000000  0000                                                        


Q ss_pred             CCCCccccccccccccCCCCCcccccCCCccCCCCCCCccCccccCchhHHHHHHHHHHHHHhcccccCCCCCCCCCCCC
Q 002695          480 DSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFS  559 (892)
Q Consensus       480 d~s~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~e~~~~~~r~ei~~dq~~~~~q~~qq~qqq~~~~~l~~p~g~~~q~~  559 (892)
                              ++.+|.+. + .|.+.      ++++                                              
T Consensus       303 --------~A~aaA~~-~-~~~~s------~~~~----------------------------------------------  320 (575)
T KOG2150|consen  303 --------AAPSGAVL-A-KGSNG------QHQS----------------------------------------------  320 (575)
T ss_pred             --------ccchhhhc-c-ccccc------CCCc----------------------------------------------
Confidence                    00000000 0 00000      0000                                              


Q ss_pred             CccchhHHhhhccCCccccccccCccccCCCCCcccccccccCCCCCCcCCcccccccCCC-CCccccccccCCCCCCCC
Q 002695          560 SQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQ-KDADVSHLKVEEPQQPQN  638 (892)
Q Consensus       560 ~~q~~ll~q~~sq~~s~~~~~~~g~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  638 (892)
                            .||+++                               |.++++|..+.+...... +.+..++.-.-..|-..+
T Consensus       321 ------~qq~~~-------------------------------~~s~~~P~~~~p~~~~~~~~~st~~~p~~p~~q~~~~  363 (575)
T KOG2150|consen  321 ------PQQLRI-------------------------------PLSMPPPHSPTPSLKRIQHKVSTLDGPRTPPEQSEEN  363 (575)
T ss_pred             ------cccccc-------------------------------cCCCCCCCCCCccccchhhccccccCCCCCccccccc
Confidence                  011111                               222333333333332211 111111110000111122


Q ss_pred             CCCCCCCCccCCCCCCCCccccCccCCcccccCCCCCCCCcCCccccccCCCCCCCC----CCCCCCCCCCccccccccC
Q 002695          639 LPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQ----PLQSSQPSGGLGVIGRRSV  714 (892)
Q Consensus       639 ~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~~~~q~~rd~~l~~~q----p~qs~~~~GLLGvi~rmsd  714 (892)
                      .|+++..-                     .+..+.+.++.+++..-..+++.+++..    +.+++...--.+...+|..
T Consensus       364 ~P~~s~k~---------------------~~~~s~~~~~~vp~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~s~~~~~~  422 (575)
T KOG2150|consen  364 TPLSSAKL---------------------QASKSESPPKGVPELEEEAAASTLSPDSSEPASANTPLSSKEQHSPFELGL  422 (575)
T ss_pred             Chhhhchh---------------------ccCcccCCCCCCCccccccccCCCCCCccccccccCCCCccccccchhhcc
Confidence            33332210                     1111233444444444444444333322    2222211111111112222


Q ss_pred             CCCccccCCCccccccCCCcccccccccchHHhhhhCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhccc
Q 002695          715 SDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSL  794 (892)
Q Consensus       715 pDL~AlG~DLTt~~~~LG~~~~~~LNLNs~E~Ly~tF~sPwdsep~r~~~P~~p~~~P~cY~~~p~P~L~np~~feK~Ki  794 (892)
                      ..||++          .++++++..++-+.|..|...+.|.+++.++.|.|++|+.+|+.|++++++..+...+|+|   
T Consensus       423 ~p~g~~----------~~~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r---  489 (575)
T KOG2150|consen  423 SPLGVQ----------SEITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER---  489 (575)
T ss_pred             cccccc----------ccccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh---
Confidence            255544          2356899999999999999999999999999999999999999999999999999999999   


Q ss_pred             CCCCCcceEEEeecCCChHHHHHHHHHHhhcccccccccceeeeccCCCcccCCCcceEEEEEEcCccCccccccccccc
Q 002695          795 DSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQR  874 (892)
Q Consensus       795 ~kfs~ETLFYIFYs~PgD~~QllAA~EL~~RgWRYHKk~~~WftR~~eP~v~t~~yErGsY~yFDp~~~~~~~~~~W~qr  874 (892)
                        |+.||||||||+++|++.|++||+||++|+||||++|.+||+|+.||+.+|+.||+|.|+|||+        ..||+|
T Consensus       490 --l~~dTLFfiFY~~qgt~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~--------~~W~qr  559 (575)
T KOG2150|consen  490 --LDPDTLFFIFYYQQGTYEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDY--------KDWSQR  559 (575)
T ss_pred             --ccccceeeEEeeecchHHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEeh--------hHhhhh
Confidence              9999999999999999999999999999999999999999999999999999999999999999        489999


Q ss_pred             cccceEEeccchhhh
Q 002695          875 IKTEFTFEYNYLEDE  889 (892)
Q Consensus       875 ~K~eFtleY~~LE~r  889 (892)
                      .|.+|+|+|.|||+.
T Consensus       560 kK~dFtfeY~yLE~~  574 (575)
T KOG2150|consen  560 KKIDFTFEYQYLEDS  574 (575)
T ss_pred             hccceeeehhhccCC
Confidence            999999999999985

>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription] Back     alignment and domain information
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID [] Back     alignment and domain information
>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes Back     alignment and domain information
>COG5601 CDC36 General negative regulator of transcription subunit [Transcription] Back     alignment and domain information
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7 Back     alignment and domain information
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein Back     alignment and domain information
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG2911 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal Back     alignment and domain information
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals Back     alignment and domain information
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins Back     alignment and domain information
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK09343 prefoldin subunit beta; Provisional Back     alignment and domain information
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PHA00425 DNA packaging protein, small subunit Back     alignment and domain information
>PRK05771 V-type ATP synthase subunit I; Validated Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional Back     alignment and domain information
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here Back     alignment and domain information
>PF09745 DUF2040: Coiled-coil domain-containing protein 55 (DUF2040); InterPro: IPR018612 This entry represents a conserved domain of approximately 130 residues of proteins conserved from fungi to humans Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92) Back     alignment and domain information
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2 Back     alignment and domain information
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>PRK03947 prefoldin subunit alpha; Reviewed Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query892
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3i2w_A290 Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 53.3 bits (127), Expect = 3e-07
 Identities = 47/263 (17%), Positives = 86/263 (32%), Gaps = 69/263 (26%)

Query: 7   LQGEIDRVL--KKVQEGVDVFDSIWNKVYDTDNANQKEKFEA-DLKKEIKKLQRYRDQIK 63
           +Q E+ R+L  K  +  + V  ++ N           + + A +L              K
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQN----------AKAWNAFNL------------SCK 267

Query: 64  TWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDP 123
             + +   + K+V+   +         I  +     +   E K+    K  L  +P+  P
Sbjct: 268 ILLTT---RFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKS-LLLKY-LDCRPQDLP 319

Query: 124 KEKAK----------SETRD-------WLNNLVSELESQIDSFEAELEGLTVKKGKTRPP 166
           +E                RD       W +    +L + I+S    LE    +K      
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK------ 373

Query: 167 RLTHLETSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDLLEDY--VERNQDDFEEFS 224
               L  S+    AHI    ++L L+  D +    V  V + L  Y  VE+   +    S
Sbjct: 374 MFDRL--SVFPPSAHIP--TILLSLIWFD-VIKSDVMVVVNKLHKYSLVEKQPKES-TIS 427

Query: 225 DVDELYHLLPLDKVESLEDLVTI 247
                   + L+    LE+   +
Sbjct: 428 -----IPSIYLELKVKLENEYAL 445
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster} Length = 290 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00