Citrus Sinensis ID: 002701
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 890 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJE6 | 907 | Putative pentatricopeptid | yes | no | 0.994 | 0.975 | 0.614 | 0.0 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.859 | 0.697 | 0.292 | 1e-101 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.973 | 0.889 | 0.272 | 8e-93 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.884 | 0.860 | 0.271 | 6e-88 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.771 | 0.919 | 0.276 | 1e-87 | |
| Q9SV46 | 851 | Pentatricopeptide repeat- | no | no | 0.905 | 0.947 | 0.277 | 5e-87 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.915 | 0.935 | 0.252 | 1e-84 | |
| Q9LER0 | 940 | Pentatricopeptide repeat- | no | no | 0.803 | 0.760 | 0.285 | 4e-84 | |
| Q940A6 | 838 | Pentatricopeptide repeat- | no | no | 0.835 | 0.887 | 0.305 | 4e-83 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.594 | 0.725 | 0.300 | 9e-83 |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1129 bits (2921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/893 (61%), Positives = 706/893 (79%), Gaps = 8/893 (0%)
Query: 1 MKLTLSQRQVTSLKFHYKRRNLCTHRPFYSDNDE----KESQFIDTLEKIIRGKQSWKLA 56
MKL + R +TS F RN+ + S +E ++ QF+D +++I+RGK+SW++A
Sbjct: 1 MKLPCTIRSITSSHFRNSFRNVSS--VIDSAQEECRIAEDKQFVDAVKRIVRGKRSWEIA 58
Query: 57 LDDAVLSTALKPHHVEKVLIQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNN 116
L ++S LK HVE++LI T+DD +L LRFFNFLGLH+ F+HSTASFCILIH LV+ N
Sbjct: 59 LSSELVSRRLKTVHVEEILIGTIDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKAN 118
Query: 117 LFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFV 176
LFWPASSLLQTLLLR L P + F+ LF CYEK SSS FDLLIQ YV+++RV DGV V
Sbjct: 119 LFWPASSLLQTLLLRALKPSDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLV 178
Query: 177 FRLMREK-HLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLC 235
F++M K L+PEVRTLS +L+GLVK R FGL ++LF D+V+VGI PD+YI++ V+RSLC
Sbjct: 179 FKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLC 238
Query: 236 ELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVV 295
ELKD +AKEMI M++ G D+N+V YN+LI GLCK Q+V+EAV +K + +K DVV
Sbjct: 239 ELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVV 298
Query: 296 TYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKL 355
TYCTLV GLCKVQEFE G+ +M+EM+ L PSEAAVSSLVEG R++GKI++A NLV ++
Sbjct: 299 TYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRV 358
Query: 356 GPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEM 415
GV PNLFVYNALI+SLCK RKF+EAE LF+ M + GL PN VTYSILID CRRG++
Sbjct: 359 VDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKL 418
Query: 416 DIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSL 475
D A+SFLG+M D G+K ++YPYNSLI+GHCK G++SAAE F EMI+K L PTV+TYTSL
Sbjct: 419 DTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL 478
Query: 476 ISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNV 535
+ GYC++ K+NKA RLYHEMTGKGIAP+ YTFT L+SGL RA + +A+K F+EM E NV
Sbjct: 479 MGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNV 538
Query: 536 MPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKE 595
PN VTYNV+IEGYC EG M KAFE L EM KG+V DTY+YR LI GLC G+ SEAK
Sbjct: 539 KPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKV 598
Query: 596 FVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSL 655
FVDGLH+ +C+LNE+CY+ LLHG+C+EG+L++AL C+EMV+RGV++DLVCY VLIDGSL
Sbjct: 599 FVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSL 658
Query: 656 KQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVV 715
K D + +FGLLKEMHD+GL+PD+VIYTSMIDAK K G+ KEAF +WD+MI EGCVPN V
Sbjct: 659 KHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEV 718
Query: 716 TYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTR-EGKMEKAVQLHNA 774
TYTA+INGLCKAG++++AE+LC +M S+PNQ+TYGCFLD LT+ E M+KAV+LHNA
Sbjct: 719 TYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNA 778
Query: 775 MLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYL 834
+L GLLANT TYN+LI GFC G+ EEA++L+ M+ +G+ PDCITY+T+I + C+R +
Sbjct: 779 ILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDV 838
Query: 835 HEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFPS 887
+A++LW+SM KG++PD +AYN LI+GCC+ GE+ KA ELR++M+R+G+ P+
Sbjct: 839 KKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 246/842 (29%), Positives = 394/842 (46%), Gaps = 77/842 (9%)
Query: 83 RLALRFFNFL----GLHKTFNHSTASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEA 138
+LAL+F ++ GL +H CI H LV+ ++ PA +L+ L L
Sbjct: 51 KLALKFLKWVVKQPGLET--DHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFV 108
Query: 139 FDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNG 198
F +L Y + S+ +D+LI+ Y++ + D + +FRLM P V T + +L
Sbjct: 109 FGALMTTYRLCNSNPSV-YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGS 167
Query: 199 LVK----------------------IRQFGLVLK-------------LFEDVVNVGILPD 223
+VK + F +++ L + + G P
Sbjct: 168 VVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPT 227
Query: 224 IYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKN 283
I ++ V+ C+ F A E++ M S G D +V YN+LIH LC+S R+ + +
Sbjct: 228 IVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLR 287
Query: 284 GFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKG 343
KR + + VTY TL+ G + L+NEM+ GL P+ ++L++G +G
Sbjct: 288 DMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEG 347
Query: 344 KIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYS 403
+A + + G+ P+ Y L++ LCK +F+ A + MK+ G+ +TY+
Sbjct: 348 NFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYT 407
Query: 404 ILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHK 463
+ID LC+ G +D AV L +M+ +GI I Y++LI+G CK+G A+ +
Sbjct: 408 GMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRV 467
Query: 464 GLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEA 523
GL+P I Y++LI C L +A R+Y M +G + +TF L++ LC+A K+ EA
Sbjct: 468 GLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEA 527
Query: 524 IKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITG 583
++ M ++PN V+++ LI GY G +KAF + DEM G +TY SL+ G
Sbjct: 528 EEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKG 587
Query: 584 LCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMD 643
LC G + EA++F+ LH ++ + Y+ LL CK G L A+ EMV+R + D
Sbjct: 588 LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD 647
Query: 644 LVCYSVLIDGSLKQSDTRRYFGLLKEMHDKG-LRPDNVIYTSMIDAKGKAGNLKEAFRLW 702
Y+ LI G ++ T KE +G + P+ V+YT +D KAG K
Sbjct: 648 SYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFR 707
Query: 703 DIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTRE 762
+ M G P++VT A+I+G + G ++K L EM PN
Sbjct: 708 EQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPN-------------- 753
Query: 763 GKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYS 822
TYNIL+HG+ + L ++ NGILPD +T
Sbjct: 754 --------------------LTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCH 793
Query: 823 TIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRR 882
+++ C+ L LK+ + + +G++ D +N LI CC GEI AF+L M
Sbjct: 794 SLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSL 853
Query: 883 GI 884
GI
Sbjct: 854 GI 855
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (877), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 258/946 (27%), Positives = 429/946 (45%), Gaps = 80/946 (8%)
Query: 17 YKRRNLCTHRPF-----YSDNDEKESQFIDTLEKIIRGKQSWKLALDDAVLSTALKPHHV 71
+++R L T F +S N EK S + I++ +++W+ L + LS + P V
Sbjct: 7 FRKRTLVTRANFLLFRSFSVNVEKLSDASAEIAGILK-QENWRDTLVSSNLSIEINPEVV 65
Query: 72 EKVL-IQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNNLFWPASSLLQTLLL 130
VL + +DD L FFN++ K SF L L F A S+++ ++
Sbjct: 66 LSVLRSKRVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIE 125
Query: 131 RGLSPKEAFDSLFDCYEKFGFSSSLG--FDLLIQSYVQNKRVADGVFVFRLMREKHLMPE 188
R E + S+ C ++F S G F +L Y+ + + VFVF L+P
Sbjct: 126 RNWPVAEVWSSIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPR 185
Query: 189 VRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIH 248
+ +L+ L++ + L +++ +V ++ D+ + ++ + C + K+++
Sbjct: 186 LSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLF 245
Query: 249 FMDSN--GSDLNV-------------------VVYNILIHGLCKSQRVFEAVEVKNGFVK 287
+ + LNV Y++LI GLCK +R+ +A +
Sbjct: 246 KTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDS 305
Query: 288 RGVKADVVTYCTLVLGLCKVQEFEFGVWLMNE---------------------------- 319
GV D TY L+ GL K + + L++E
Sbjct: 306 LGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEK 365
Query: 320 -------MIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALIN 372
MI GL+P A +SL+EG+ R+ + + L+ ++ +V + + Y ++
Sbjct: 366 AKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVK 425
Query: 373 SLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKA 432
+C + A + EM G PNVV Y+ LI + + A+ L +M ++GI
Sbjct: 426 GMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAP 485
Query: 433 TIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLY 492
I+ YNSLI G K + A SF EM+ GL P TY + ISGY + A +
Sbjct: 486 DIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYV 545
Query: 493 HEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCRE 552
EM G+ PN T LI+ C+ K+ EA + M+++ ++ + TY VL+ G +
Sbjct: 546 KEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN 605
Query: 553 GCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCY 612
+ A E+ EM GKG+ D ++Y LI G G + +A D + E N + Y
Sbjct: 606 DKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIY 665
Query: 613 SALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHD 672
+ LL G+C+ G ++ A EM +G++ + V Y +IDG K D F L EM
Sbjct: 666 NMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKL 725
Query: 673 KGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMD- 731
KGL PD+ +YT+++D + +++ A ++ +GC + + ALIN + K G +
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTEL 784
Query: 732 KAELLCKEMLASGSL-----PNQITYGCFLDYLTREGKMEKAVQLHNAMLDG-LLANTVT 785
K E+L + L GS PN +TY +DYL +EG +E A +L + M + L+ +T
Sbjct: 785 KTEVLNR--LMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVIT 842
Query: 786 YNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSML 845
Y L++G+ MG+ E + + GI PD I YS II + K G +AL L D M
Sbjct: 843 YTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMF 902
Query: 846 NKGLKPDPLAYNF-----LIYGCCIRGEITKAFELRDDMMRRGIFP 886
K D + L+ G GE+ A ++ ++M+R P
Sbjct: 903 AKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIP 948
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (835), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 238/876 (27%), Positives = 412/876 (47%), Gaps = 89/876 (10%)
Query: 19 RRNLCTHRPFYSDNDEKESQFIDTLEKI--IRGKQSWKLALDDAVLSTALKPHHVEKVLI 76
RR C+ P + E+ES + ++ I K +W + + +A+ P HV +
Sbjct: 39 RRQFCSVSPLLRNLPEEESDSMSVPHRLLSILSKPNWHKSPSLKSMVSAISPSHVSSLF- 97
Query: 77 QTLD-DSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNNLFWPASSLLQTLLLRGLSP 135
+LD D + AL F +++ + + HS S+ L+ L+ N
Sbjct: 98 -SLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNG------------------- 137
Query: 136 KEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGV 195
Y F L L+I+S V D ++V L R+
Sbjct: 138 ----------YVGVVFKIRL---LMIKSC---DSVGDALYVLDLCRK------------- 168
Query: 196 LNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGS 255
+ K +F L KL I ++ ++ SL + K++ M +
Sbjct: 169 ---MNKDERFELKYKLI-----------IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKV 214
Query: 256 DLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVW 315
N+ YN +++G CK V EA + + V+ G+ D TY +L++G C+ ++ +
Sbjct: 215 CPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFK 274
Query: 316 LMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLC 375
+ NEM G +E A + L+ G +ID+A +L K+ P + Y LI SLC
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLC 334
Query: 376 KERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIY 435
+ +EA L EM++ G+ PN+ TY++LIDSLC + + + A LG+M ++G+ +
Sbjct: 335 GSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVI 394
Query: 436 PYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEM 495
YN+LI+G+CK G + A E M + L+P TY LI GYC ++KA + ++M
Sbjct: 395 TYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKM 453
Query: 496 TGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCM 555
+ + P+ T+ +LI G CR+ A + M +R ++P++ TY +I+ C+ +
Sbjct: 454 LERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRV 513
Query: 556 VKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSAL 615
+A +L D + KG+ + Y +LI G C AG+V EA ++ + ++C N + ++AL
Sbjct: 514 EEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNAL 573
Query: 616 LHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGL 675
+HG C +G+LK+A +MV+ G+ + ++LI LK D + ++M G
Sbjct: 574 IHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGT 633
Query: 676 RPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAEL 735
+PD YT+ I + G L +A + M G P++ TY++LI G G + A
Sbjct: 634 KPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFD 693
Query: 736 LCKEMLASGSLPNQITYGCFLDYL--TREGKMEKAVQLHNAMLDGLLANTVTYNILIHGF 793
+ K M +G P+Q T+ + +L + GK + + AM +
Sbjct: 694 VLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSN---------------- 737
Query: 794 CTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSML-NKGLKPD 852
M +F+ +LL M+++ + P+ +Y +I C+ G L A K++D M N+G+ P
Sbjct: 738 --MMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPS 795
Query: 853 PLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFPSL 888
L +N L+ CC + +A ++ DDM+ G P L
Sbjct: 796 ELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQL 831
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (832), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 196/709 (27%), Positives = 356/709 (50%), Gaps = 22/709 (3%)
Query: 62 LSTALKPHHVEKVLIQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNNLFWPA 121
LS P +L+++ +D L L+F N+ H+ F + CI +H L + L+ A
Sbjct: 42 LSANFTPEAASNLLLKSQNDQALILKFLNWANPHQFF--TLRCKCITLHILTKFKLYKTA 99
Query: 122 SSLLQTLLLRGLSPKEA---FDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFR 178
L + + + L + A F SL + Y+ +S+S FDL+++SY + + + +
Sbjct: 100 QILAEDVAAKTLDDEYASLVFKSLQETYD-LCYSTSSVFDLVVKSYSRLSLIDKALSIVH 158
Query: 179 LMREKHLMPEVRTLSGVLNGLVKI-RQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCEL 237
L + MP V + + VL+ ++ R +F++++ + P+++ ++ ++R C
Sbjct: 159 LAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFA 218
Query: 238 KDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTY 297
+ A + M++ G NVV YN LI G CK +++ + ++ +G++ ++++Y
Sbjct: 219 GNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISY 278
Query: 298 CTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGP 357
++ GLC+ + +++ EM G E ++L++G+ ++G A + ++
Sbjct: 279 NVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR 338
Query: 358 LGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDI 417
G+ P++ Y +LI+S+CK N A ++M+ +GL PN TY+ L+D ++G M+
Sbjct: 339 HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNE 398
Query: 418 AVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLIS 477
A L +M D G ++ YN+LI+GHC G + A + E+M KGL+P V++Y++++S
Sbjct: 399 AYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLS 458
Query: 478 GYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMP 537
G+C +++A R+ EM KGI P++ T+++LI G C + EA ++EML + P
Sbjct: 459 GFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPP 518
Query: 538 NEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFV 597
+E TY LI YC EG + KA +L +EM KG++ D TY LI GL R EAK +
Sbjct: 519 DEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
Query: 598 DGLHREHCKLNEMCYS---------------ALLHGYCKEGRLKDALGACREMVERGVNM 642
L E +++ Y +L+ G+C +G + +A M+ +
Sbjct: 579 LKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKP 638
Query: 643 DLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLW 702
D Y+++I G + D R+ + L KEM G V +++ A K G + E +
Sbjct: 639 DGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVI 698
Query: 703 DIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQIT 751
++ + L+ + G MD + EM G LPN I+
Sbjct: 699 VHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNGIS 747
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980, mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (827), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 238/859 (27%), Positives = 419/859 (48%), Gaps = 53/859 (6%)
Query: 20 RNLCTHRPFYSDND-EKESQFIDTLEKI-IRGKQSWKLALDDAVLSTALKPHH-----VE 72
RNL ++PF S + KES+ +++ + G S + + V + KP V
Sbjct: 17 RNLRNNKPFCSQSQFPKESENPSQEQRLLVYGSTSEENPVTSKVSLLSAKPEQKDDASVI 76
Query: 73 KVLIQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNNLFWPASSLLQTLLLRG 132
VL+ ++ ALRF+N+ + F +LIH LV
Sbjct: 77 DVLLNRRNNPEAALRFYNWARPWRGSFEDGDVFWVLIHILVS------------------ 118
Query: 133 LSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQ--NKRVADGVFVFRLM-REKHLMPEV 189
SP E +G +S DLLI+ YV N V V +L+ K EV
Sbjct: 119 -SP-----------ETYGRAS----DLLIR-YVSTSNPTPMASVLVSKLVDSAKSFGFEV 161
Query: 190 --RTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMI 247
R + +LN K RQ + + ++ + ++P + + +L + +AKE+
Sbjct: 162 NSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELY 221
Query: 248 HFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKV 307
M + G D + V +L+ + ++ EA+EV + ++RG + D + Y V CK
Sbjct: 222 SRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKT 281
Query: 308 QEFEFGVWLMNEMIELGL-VPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFV 366
+ L+ EM E L VPS+ +S++ ++G +DDA L +++ G+ N+
Sbjct: 282 LDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVA 341
Query: 367 YNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMA 426
+LI CK A LF++M+++G SPN VT+S+LI+ + GEM+ A+ F KM
Sbjct: 342 ATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKME 401
Query: 427 DEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLN 486
G+ +++ +++I G K A F+E GL V +++S C + K +
Sbjct: 402 VLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLA-NVFVCNTILSWLCKQGKTD 460
Query: 487 KAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLI 546
+A L +M +GI PN ++ ++ G CR + A F +LE+ + PN TY++LI
Sbjct: 461 EATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILI 520
Query: 547 EGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREH-- 604
+G R A E+++ M + + Y+++I GLC G+ S+A+E + + E
Sbjct: 521 DGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRL 580
Query: 605 CKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYF 664
C ++ M Y++++ G+ KEG + A+ A EM G++ +++ Y+ L++G K + +
Sbjct: 581 C-VSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQAL 639
Query: 665 GLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGL 724
+ EM +KG++ D Y ++ID K N++ A L+ ++ EG P+ Y +LI+G
Sbjct: 640 EMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGF 699
Query: 725 CKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLD-GLLANT 783
G M A L K+ML G + TY +D L ++G + A +L+ M GL+ +
Sbjct: 700 RNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDE 759
Query: 784 VTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDS 843
+ Y ++++G G+F + K+ M N + P+ + Y+ +I + + G L EA +L D
Sbjct: 760 IIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDE 819
Query: 844 MLNKGLKPDPLAYNFLIYG 862
ML+KG+ PD ++ L+ G
Sbjct: 820 MLDKGILPDGATFDILVSG 838
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (807), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 222/878 (25%), Positives = 396/878 (45%), Gaps = 63/878 (7%)
Query: 17 YKRRNLCTHRPFYSDNDEKES---------QFIDTLEKIIRGKQSWKLALDDAVLSTALK 67
+ R C + SDN E Q ++ + ++ W + ++ + + + K
Sbjct: 4 FARTKFCKNLSSLSDNGENHEKPYTFEGNRQTVNDICNVLE-TGPWGPSAENTLSALSFK 62
Query: 68 PHHVEKV-LIQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNNLFWPASSLLQ 126
P + +++ L D A+ +F + H S+ L+ + + F +L
Sbjct: 63 PQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILG 122
Query: 127 TLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLMREKHLM 186
+ + G P S+ C E ++ V+ ++ +G V ++MR+
Sbjct: 123 EMSVAGFGP-----SVNTCIE------------MVLGCVKANKLREGYDVVQMMRKFKFR 165
Query: 187 PEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEM 246
P + ++ + ++L LF+ + +G P +++ + ++R + A +
Sbjct: 166 PAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSL 225
Query: 247 IHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCK 306
+ M S+ D ++V+YN+ I K +V A + + G+K D VTY +++ LCK
Sbjct: 226 LDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCK 285
Query: 307 VQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFV 366
+ V + + + VP A ++++ G+ GK D+A++L+ + G +P++
Sbjct: 286 ANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIA 345
Query: 367 YNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMA 426
YN ++ L K K +EA +F EMK K +PN+ TY+ILID LCR G++D A M
Sbjct: 346 YNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQ 404
Query: 427 DEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLN 486
G+ + N ++ CK L A + FEEM +K TP IT+ SLI G +++
Sbjct: 405 KAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVD 464
Query: 487 KAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLI 546
A+++Y +M NS +T+LI + + K + +M+ +N P+ N +
Sbjct: 465 DAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYM 524
Query: 547 EGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCK 606
+ + G K + +E+ + V D +Y LI GL AG +E E + + C
Sbjct: 525 DCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCV 584
Query: 607 LNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGL 666
L+ Y+ ++ G+CK G++ A EM +G +V Y +IDG K + L
Sbjct: 585 LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYML 644
Query: 667 LKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCK 726
+E K + + VIY+S+ID GK G + EA+ + + ++ +G PN+ T+ +L++ L K
Sbjct: 645 FEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVK 704
Query: 727 AGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTY 786
A +++A + + M PNQ+TYG
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQVTYG--------------------------------- 731
Query: 787 NILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLN 846
ILI+G C + KF +A M G+ P I+Y+T+I K G + EA L+D
Sbjct: 732 -ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKA 790
Query: 847 KGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGI 884
G PD YN +I G AF L ++ RRG+
Sbjct: 791 NGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGL 828
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 313 bits (802), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 210/736 (28%), Positives = 369/736 (50%), Gaps = 21/736 (2%)
Query: 157 FDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVL-----NGLVKIRQFGLVLKL 211
F L + Y+ +R+ M ++P+ R + ++ NGLV Q L+
Sbjct: 63 FHTLFRLYLSCERLYGAARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVH-DQVSLI--- 118
Query: 212 FEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCK 271
+ ++ G+ PD++ + ++ S C++ A I + + ++ V YN +I GLC+
Sbjct: 119 YSKMIACGVSPDVFALNVLIHSFCKVGRLSFA---ISLLRNRVISIDTVTYNTVISGLCE 175
Query: 272 SQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAA 331
EA + + VK G+ D V+Y TL+ G CKV F L++E+ EL L+
Sbjct: 176 HGLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLITHTIL 235
Query: 332 VSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMK 391
+SS + I++A+ + G P++ ++++IN LCK K E L EM+
Sbjct: 236 LSS----YYNLHAIEEAYR---DMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREME 288
Query: 392 QKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLS 451
+ + PN VTY+ L+DSL + A++ +M GI + Y L+ G K G+L
Sbjct: 289 EMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLR 348
Query: 452 AAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALI 511
AE F+ ++ P V+TYT+L+ G C L+ A + +M K + PN T++++I
Sbjct: 349 EAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMI 408
Query: 512 SGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLV 571
+G + L EA+ +M ++NV+PN TY +I+G + G A EL EM G+
Sbjct: 409 NGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVE 468
Query: 572 ADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGA 631
+ Y +L+ L GR+ E K V + + L+++ Y++L+ + K G + AL
Sbjct: 469 ENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEAALAW 528
Query: 632 CREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGK 691
EM ERG+ D+V Y+VLI G LK + K M +KG+ PD + M++++ K
Sbjct: 529 AEEMQERGMPWDVVSYNVLISGMLKFGKVGADWA-YKGMREKGIEPDIATFNIMMNSQRK 587
Query: 692 AGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQIT 751
G+ + +LWD M G P++++ ++ LC+ G M++A + +M+ PN T
Sbjct: 588 QGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTT 647
Query: 752 YGCFLDYLTREGKMEKAVQLHNAMLD-GLLANTVTYNILIHGFCTMGKFEEATKLLGGMM 810
Y FLD ++ + + + H +L G+ + YN LI C +G ++A ++G M
Sbjct: 648 YRIFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDME 707
Query: 811 DNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEIT 870
G +PD +T++++++ Y ++ +AL + M+ G+ P+ YN +I G G I
Sbjct: 708 ARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIK 767
Query: 871 KAFELRDDMMRRGIFP 886
+ + +M RG+ P
Sbjct: 768 EVDKWLSEMKSRGMRP 783
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 310 bits (794), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 249/815 (30%), Positives = 384/815 (47%), Gaps = 71/815 (8%)
Query: 15 FHYKRR-NLCTHRPFYSDNDEKESQFIDTLEKIIRGKQSWKLALDD---AVLSTALKPHH 70
FH R C HRP S+ + + L ++ K +LD L T L P
Sbjct: 51 FHTSRYLQQCVHRPDKSEETSSDRHLHERLSSVLS-----KRSLDYEQCKQLITVLSPLE 105
Query: 71 VEKVL--IQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNNLFWPASSLLQTL 128
+++ ++ + + AL FF +F+ S S+C+LI L+ NL A +L L
Sbjct: 106 FDRLFPEFRSKVNPKTALDFFRLASDSFSFSFSLRSYCLLIGLLLDANLLSAARVVLIRL 165
Query: 129 L----------LRG--LSPKEAFDSLFDCY-EKFGFSSSLGFDLLIQSY-VQNKRVADGV 174
+ LR ++ +A SL C+ E+ S DLLI+ Y Q KR DG
Sbjct: 166 INGNVPVLPCGLRDSRVAIADAMASLSLCFDEEIRRKMS---DLLIEVYCTQFKR--DGC 220
Query: 175 F----VFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAV 230
+ VF ++ K + P T + +L LV+ +F + F DVV G+ PD+Y+
Sbjct: 221 YLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAF-DVVCKGVSPDVYL---- 275
Query: 231 MRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGV 290
+ I+ CK +V EAV++ + + GV
Sbjct: 276 -------------------------------FTTAINAFCKGGKVEEAVKLFSKMEEAGV 304
Query: 291 KADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFN 350
+VVT+ T++ GL ++ +M+E G+ P+ S LV+G R +I DA+
Sbjct: 305 APNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYF 364
Query: 351 LVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLC 410
++ ++ G PN+ VYN LI+S + N+A + + M KGLS TY+ LI C
Sbjct: 365 VLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYC 424
Query: 411 RRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVI 470
+ G+ D A L +M G + S+I C +A F EM+ + ++P
Sbjct: 425 KNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGG 484
Query: 471 TYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEM 530
T+LISG C K +KA L+ + KG ++ T AL+ GLC A KL EA + E+
Sbjct: 485 LLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEI 544
Query: 531 LERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRV 590
L R + + V+YN LI G C + + +AF LDEM +GL D YTY LI GL + +V
Sbjct: 545 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKV 604
Query: 591 SEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVL 650
EA +F D R + YS ++ G CK R ++ EM+ + V + V Y+ L
Sbjct: 605 EEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL 664
Query: 651 IDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGC 710
I + L ++M KG+ P++ YTS+I ++EA L++ M EG
Sbjct: 665 IRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGL 724
Query: 711 VPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQ 770
PNV YTALI+G K G M K E L +EM + PN+ITY + R+G + +A +
Sbjct: 725 EPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASR 784
Query: 771 LHNAMLD-GLLANTVTYNILIHGFCTMGKFEEATK 804
L N M + G++ +++TY I+G+ G EA K
Sbjct: 785 LLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 819
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (790), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 160/532 (30%), Positives = 291/532 (54%), Gaps = 3/532 (0%)
Query: 324 GLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEA 383
G S A ++L+ R G ++ A+ + ++ GV N++ N ++N+LCK+ K +
Sbjct: 195 GFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKV 254
Query: 384 EFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISG 443
+++++KG+ P++VTY+ LI + +G M+ A + M +G +Y YN++I+G
Sbjct: 255 GTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVING 314
Query: 444 HCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPN 503
CK G A+ F EM+ GL+P TY SL+ C + + + +++ +M + + P+
Sbjct: 315 LCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPD 374
Query: 504 SYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLD 563
F++++S R+ L +A+ +F+ + E ++P+ V Y +LI+GYCR+G + A L +
Sbjct: 375 LVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRN 434
Query: 564 EMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEG 623
EM +G D TY +++ GLC + EA + + + + + L+ G+CK G
Sbjct: 435 EMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLG 494
Query: 624 RLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYT 683
L++A+ ++M E+ + +D+V Y+ L+DG K D + +M K + P + Y+
Sbjct: 495 NLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYS 554
Query: 684 SMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLAS 743
+++A G+L EAFR+WD MI + P V+ ++I G C++G E ++M++
Sbjct: 555 ILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISE 614
Query: 744 GSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLD---GLLANTVTYNILIHGFCTMGKFE 800
G +P+ I+Y + RE M KA L M + GL+ + TYN ++HGFC + +
Sbjct: 615 GFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMK 674
Query: 801 EATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD 852
EA +L M++ G+ PD TY+ +I + + L EA ++ D ML +G PD
Sbjct: 675 EAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 890 | ||||||
| 224054827 | 915 | predicted protein [Populus trichocarpa] | 0.976 | 0.949 | 0.716 | 0.0 | |
| 225435038 | 900 | PREDICTED: putative pentatricopeptide re | 0.986 | 0.975 | 0.676 | 0.0 | |
| 356544378 | 903 | PREDICTED: putative pentatricopeptide re | 0.968 | 0.954 | 0.619 | 0.0 | |
| 15238562 | 907 | pentatricopeptide repeat-containing prot | 0.994 | 0.975 | 0.614 | 0.0 | |
| 449459086 | 908 | PREDICTED: putative pentatricopeptide re | 0.995 | 0.975 | 0.621 | 0.0 | |
| 297796945 | 907 | pentatricopeptide repeat-containing prot | 0.993 | 0.974 | 0.607 | 0.0 | |
| 357473969 | 970 | UDP-glucoronosyl/UDP-glucosyl transferas | 0.911 | 0.836 | 0.606 | 0.0 | |
| 297746120 | 819 | unnamed protein product [Vitis vinifera] | 0.839 | 0.912 | 0.561 | 0.0 | |
| 255584017 | 721 | pentatricopeptide repeat-containing prot | 0.682 | 0.841 | 0.629 | 0.0 | |
| 357127090 | 886 | PREDICTED: putative pentatricopeptide re | 0.795 | 0.799 | 0.475 | 0.0 |
| >gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa] gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1281 bits (3315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/875 (71%), Positives = 733/875 (83%), Gaps = 6/875 (0%)
Query: 15 FHYKRRNL-CTHRPFYSDNDEKESQFIDTLEKIIRGKQSWKLALDDAVLSTALKPHHVEK 73
F K ++L CT DND K+SQFI TL I+RGK+SWK+A +D +ST LKPHHVEK
Sbjct: 19 FQTKPKHLYCTSA--IQDNDVKDSQFIATLRNIVRGKESWKIAFNDPFISTKLKPHHVEK 76
Query: 74 VLIQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNNLFWPASSLLQTLLLRG- 132
VL+ TLDD+RLALRFFNFLGLHK FNHST SFCILIH LV NLFWPASSLLQTLLLRG
Sbjct: 77 VLLLTLDDTRLALRFFNFLGLHKNFNHSTMSFCILIHALVNANLFWPASSLLQTLLLRGG 136
Query: 133 LSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTL 192
L P+E F++L DC+EK F SSLGFDLLIQSYVQ KR+ D V +FRLMR+ LMP+VRTL
Sbjct: 137 LDPREVFEALLDCFEKCDFISSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTL 196
Query: 193 SGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDS 252
VLNGL KIR+ +VL LF +++++GI PDIYI+ AV+RS CELK+F KAKEMI M+S
Sbjct: 197 GEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMES 256
Query: 253 NGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEF 312
SDLNVVVYN+LIHGLCK++RV+EAVE+KNG +++G+ A VTYCTLVLGLCKVQEFE
Sbjct: 257 --SDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEV 314
Query: 313 GVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALIN 372
G +M+EMIELG VP+EAA+SSLVEG RRKGK+ DAF+LVN++ +G +P+LFVYNALIN
Sbjct: 315 GAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALIN 374
Query: 373 SLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKA 432
SLCK+ KF+EAE LF EM +KGL N VTYSILIDS CRRG++D A+ FLGKM GIK
Sbjct: 375 SLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKI 434
Query: 433 TIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLY 492
T+YPYNSLI+GHCKLGNLSAA SFF+EMI KGL PTV++YTSLISGYCN+ KL++AFRLY
Sbjct: 435 TVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLY 494
Query: 493 HEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCRE 552
HEMTGKGIAPN+YTFT LIS L RAN++T+A + FDEMLE+N+MPNEVTYNV+IEG+C+E
Sbjct: 495 HEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKE 554
Query: 553 GCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCY 612
G VKAFELL++M KGLV DTYTYR LI+ LCS GRV EAK+F+D LHREH KLNEMCY
Sbjct: 555 GNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCY 614
Query: 613 SALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHD 672
SALLHGYCKEGRL+DALG CREMV+RGV+MDLVCY+VLIDG++K+ DT FGLLK MHD
Sbjct: 615 SALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHD 674
Query: 673 KGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDK 732
+ LRPD VIYTSMID KAG++K+AF +WDIMI EGC PN+VTYT LIN LCKAG MDK
Sbjct: 675 QRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDK 734
Query: 733 AELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHG 792
AELL KEML S S PN +TY CFLD+L REG MEKAVQLHN ML GLLANTV+YNIL+ G
Sbjct: 735 AELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRG 794
Query: 793 FCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD 852
FC +G+ EEATKLL M+DN I PDCITYSTIIYQ C+RG L A++ WD+MLNKGLKPD
Sbjct: 795 FCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPD 854
Query: 853 PLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFPS 887
LAYNFLIYGCCI GE+ KAFELRDDM+RRG+ P+
Sbjct: 855 TLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPN 889
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1245 bits (3221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/887 (67%), Positives = 727/887 (81%), Gaps = 9/887 (1%)
Query: 1 MKLTLSQRQVTSLKFHYKRRNLCTHRPFYSDNDEKESQFIDTLEKIIRGKQSWKLALDDA 60
MK + +T+ F K+R C +SQF+ L I+RG QSW++AL+++
Sbjct: 1 MKFARHRPHLTNPNFLRKQRTFCA---------SPDSQFVACLTDIVRGNQSWRVALNNS 51
Query: 61 VLSTALKPHHVEKVLIQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNNLFWP 120
+S LKPHHVEKVLIQTLDDSRLALRFFNFLGLHK F+HST SFCILIH LVQ+NL+WP
Sbjct: 52 FISQTLKPHHVEKVLIQTLDDSRLALRFFNFLGLHKNFDHSTTSFCILIHALVQSNLYWP 111
Query: 121 ASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLM 180
ASSLLQTLLLRGL+P+ F+S D Y K FS++LGFDLLIQ+YVQN+R DG+ V RLM
Sbjct: 112 ASSLLQTLLLRGLNPEGLFESFLDSYRKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLM 171
Query: 181 REKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDF 240
+ ++P++RTLSGVLNGL++IRQF + L LF+++V+ G+ PD+Y+++AV+RSLCELKDF
Sbjct: 172 MDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDF 231
Query: 241 VKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTL 300
++A+E+I M+S+G DL+V YN+ I GLCK+QRV+EAVE+KN +G++ADV TYCTL
Sbjct: 232 IRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTL 291
Query: 301 VLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGV 360
VLGLCKV+EFE G +MNEMIE G VPSEAAVS+LV+G R+KG I AF+LVNK+ GV
Sbjct: 292 VLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGV 351
Query: 361 VPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVS 420
P+LFVYNALINS+CK+ K +EAE LFN M KGL PN VTYSILIDS C+RG++D+A+
Sbjct: 352 APSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALH 411
Query: 421 FLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYC 480
FLGKM + GIKAT+YPY+SLISGHCKLG L AA+S F+EMI GL P V+ YTSLISGYC
Sbjct: 412 FLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYC 471
Query: 481 NEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEV 540
E +L+ AFRLYHEMTGKGI+PN+YTFTALISGLC AN++ EA K F EM+E NV+PNEV
Sbjct: 472 KEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEV 531
Query: 541 TYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGL 600
TYNVLIEG+C+EG V+AFELLDEM KGLV DTYTYR LI+GLCS GRVSEA+EF++ L
Sbjct: 532 TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDL 591
Query: 601 HREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDT 660
E KLNEMC+SALLHGYCKEGRL DAL ACREM+ RGV MDLVCYSVLI G L+Q D
Sbjct: 592 QGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDR 651
Query: 661 RRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTAL 720
R LLK+MHD+GLRPDNV+YT+MIDA KAGNLK AF LWDIM+ EGC+PNVVTYTAL
Sbjct: 652 RSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTAL 711
Query: 721 INGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLL 780
INGLCK G MDKAELLC+EMLAS SLPNQ TY CFLDYLT EG +EKA+QLH+ +L+G L
Sbjct: 712 INGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFL 771
Query: 781 ANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKL 840
ANTVTYNILI GFC +G+ +EA ++L M+D+GI PDCI+YSTIIY+YC+RG L EA+KL
Sbjct: 772 ANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKL 831
Query: 841 WDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFPS 887
W+SMLN+G+ PD +AYNFLIYGCC+ GE+TKAFELRDDMMRRG+ P+
Sbjct: 832 WESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPN 878
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1148 bits (2969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/864 (61%), Positives = 684/864 (79%), Gaps = 2/864 (0%)
Query: 25 HRPFYSD--NDEKESQFIDTLEKIIRGKQSWKLALDDAVLSTALKPHHVEKVLIQTLDDS 82
HR F + ++E + +F+ L I+RGKQSWK+A +DA +S+ L+PHHVE+VL+ TLDD+
Sbjct: 24 HRHFSASKPDEENDCRFVSLLCDIVRGKQSWKVAFNDASISSTLRPHHVEQVLMNTLDDA 83
Query: 83 RLALRFFNFLGLHKTFNHSTASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSL 142
+LALRFFNFLGLHK NHST S+ I++H LV + LFWPA+SLL TLLLR PK F
Sbjct: 84 KLALRFFNFLGLHKNMNHSTTSYAIMVHALVHSRLFWPANSLLHTLLLRESHPKCVFSHF 143
Query: 143 FDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKI 202
D Y++ FSS+LGF+LL+Q+YV + R+ D V + +LM +L+PEVRTLS +LNGL+K+
Sbjct: 144 LDSYKRCKFSSTLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKV 203
Query: 203 RQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVY 262
R+F V +LF++ VN G+ PD Y SAV+RS+CELKDF++AKE I +M++NG DL++V Y
Sbjct: 204 RKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTY 263
Query: 263 NILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIE 322
N+LIHGLCK RV EAVEVK +G+ ADVVTYCTLVLG C++Q+FE G+ LM+EM+E
Sbjct: 264 NVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVE 323
Query: 323 LGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNE 382
LG P+EAAVS LV+G R++GKIDDA+ LV K+G G VPNLFVYNALINSLCK ++
Sbjct: 324 LGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDK 383
Query: 383 AEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLIS 442
AE L++ M L PN +TYSILIDS CR G +D+A+S+ +M +GI T+Y YNSLI+
Sbjct: 384 AELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLIN 443
Query: 443 GHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAP 502
G CK G+LSAAES F EM +KG+ PT T+TSLISGYC ++++ KAF+LY++M GI P
Sbjct: 444 GQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITP 503
Query: 503 NSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELL 562
N YTFTALISGLC NK+ EA + FDE++ER + P EVTYNVLIEGYCR+G + KAFELL
Sbjct: 504 NVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELL 563
Query: 563 DEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKE 622
++M KGLV DTYTYR LI+GLCS GRVS+AK+F+D LH+++ KLNEMCYSALLHGYC+E
Sbjct: 564 EDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQE 623
Query: 623 GRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIY 682
GRL +AL A EM++RG+NMDLVC++VLIDG+LKQ D + +F LLK+MHD+GLRPDNVIY
Sbjct: 624 GRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIY 683
Query: 683 TSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLA 742
TSMID K G+ K+AF WD+M+ E C PNVVTYTAL+NGLCKAG MD+A LL K M A
Sbjct: 684 TSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQA 743
Query: 743 SGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEA 802
+ PN ITYGCFLD LT+EG M++A+ LH+AML GLLANTVT+NI+I GFC +G+F EA
Sbjct: 744 ANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFHEA 803
Query: 803 TKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYG 862
TK+L M +NGI PDC+TYST+IY+YC+ G + ++KLWD+MLN+GL+PD +AYN LIYG
Sbjct: 804 TKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYG 863
Query: 863 CCIRGEITKAFELRDDMMRRGIFP 886
CC+ GE+ KAFELRDDM+RRGI P
Sbjct: 864 CCVNGELDKAFELRDDMLRRGIIP 887
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g59900 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana] gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1129 bits (2921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/893 (61%), Positives = 706/893 (79%), Gaps = 8/893 (0%)
Query: 1 MKLTLSQRQVTSLKFHYKRRNLCTHRPFYSDNDE----KESQFIDTLEKIIRGKQSWKLA 56
MKL + R +TS F RN+ + S +E ++ QF+D +++I+RGK+SW++A
Sbjct: 1 MKLPCTIRSITSSHFRNSFRNVSS--VIDSAQEECRIAEDKQFVDAVKRIVRGKRSWEIA 58
Query: 57 LDDAVLSTALKPHHVEKVLIQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNN 116
L ++S LK HVE++LI T+DD +L LRFFNFLGLH+ F+HSTASFCILIH LV+ N
Sbjct: 59 LSSELVSRRLKTVHVEEILIGTIDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKAN 118
Query: 117 LFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFV 176
LFWPASSLLQTLLLR L P + F+ LF CYEK SSS FDLLIQ YV+++RV DGV V
Sbjct: 119 LFWPASSLLQTLLLRALKPSDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLV 178
Query: 177 FRLMREK-HLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLC 235
F++M K L+PEVRTLS +L+GLVK R FGL ++LF D+V+VGI PD+YI++ V+RSLC
Sbjct: 179 FKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLC 238
Query: 236 ELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVV 295
ELKD +AKEMI M++ G D+N+V YN+LI GLCK Q+V+EAV +K + +K DVV
Sbjct: 239 ELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVV 298
Query: 296 TYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKL 355
TYCTLV GLCKVQEFE G+ +M+EM+ L PSEAAVSSLVEG R++GKI++A NLV ++
Sbjct: 299 TYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRV 358
Query: 356 GPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEM 415
GV PNLFVYNALI+SLCK RKF+EAE LF+ M + GL PN VTYSILID CRRG++
Sbjct: 359 VDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKL 418
Query: 416 DIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSL 475
D A+SFLG+M D G+K ++YPYNSLI+GHCK G++SAAE F EMI+K L PTV+TYTSL
Sbjct: 419 DTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL 478
Query: 476 ISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNV 535
+ GYC++ K+NKA RLYHEMTGKGIAP+ YTFT L+SGL RA + +A+K F+EM E NV
Sbjct: 479 MGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNV 538
Query: 536 MPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKE 595
PN VTYNV+IEGYC EG M KAFE L EM KG+V DTY+YR LI GLC G+ SEAK
Sbjct: 539 KPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKV 598
Query: 596 FVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSL 655
FVDGLH+ +C+LNE+CY+ LLHG+C+EG+L++AL C+EMV+RGV++DLVCY VLIDGSL
Sbjct: 599 FVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSL 658
Query: 656 KQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVV 715
K D + +FGLLKEMHD+GL+PD+VIYTSMIDAK K G+ KEAF +WD+MI EGCVPN V
Sbjct: 659 KHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEV 718
Query: 716 TYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTR-EGKMEKAVQLHNA 774
TYTA+INGLCKAG++++AE+LC +M S+PNQ+TYGCFLD LT+ E M+KAV+LHNA
Sbjct: 719 TYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNA 778
Query: 775 MLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYL 834
+L GLLANT TYN+LI GFC G+ EEA++L+ M+ +G+ PDCITY+T+I + C+R +
Sbjct: 779 ILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDV 838
Query: 835 HEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFPS 887
+A++LW+SM KG++PD +AYN LI+GCC+ GE+ KA ELR++M+R+G+ P+
Sbjct: 839 KKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900-like [Cucumis sativus] gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1129 bits (2919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/888 (62%), Positives = 698/888 (78%), Gaps = 2/888 (0%)
Query: 1 MKLTLSQRQVTSLKFHYKR-RNLCTHRPFYSDNDEKESQFIDTLEKIIRGKQSWKLALDD 59
MKL +R + + R R CT R ++E +S F+ LE+I+RG QSWK+A ++
Sbjct: 1 MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN 60
Query: 60 AVLSTALKPHHVEKVLIQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNNLFW 119
+ +S ++PHHVEKVLI+TLDDSRLALRFFNFLGLH+ F+HSTASFCILIH L+QNNLFW
Sbjct: 61 SSISGNIEPHHVEKVLIRTLDDSRLALRFFNFLGLHRNFHHSTASFCILIHSLLQNNLFW 120
Query: 120 PASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRL 179
PASSLLQTLLLRGL+P + F++ F+ Y+K+ FSSS GFD+LIQ YVQNKRV DGV V L
Sbjct: 121 PASSLLQTLLLRGLNPHQIFENFFESYKKYKFSSSSGFDMLIQHYVQNKRVMDGVLVVNL 180
Query: 180 MREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKD 239
MR+ L+PEVRTLS +LN L +IR+F VL+LF+ +VN G+ PD YI++ V++ LCELKD
Sbjct: 181 MRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKD 240
Query: 240 FVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCT 299
F KAKE+I+ + NG L++V YN+ I+GLCKS+RV+EAVEVK ++G+KAD+VTYCT
Sbjct: 241 FNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCT 300
Query: 300 LVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLG 359
LVLGLC++QEFE G+ +M+EMIELG VPSEAAVS L+EG + G I+ AF L+NK+G LG
Sbjct: 301 LVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLG 360
Query: 360 VVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAV 419
VVPNLFVYN++INSLCK K EAE LF+ M ++GL+PN VTY+ILID RR ++D+A
Sbjct: 361 VVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAF 420
Query: 420 SFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGY 479
+ KM + GI AT+Y YNS+I+ CK G + AE F+EM+ KGL PTV TYTSLISGY
Sbjct: 421 YYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGY 480
Query: 480 CNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNE 539
C + + KAF+LYHEMTGKGIAPN+ TFTALI GLC+ NK+ EA K FDEM+E ++PNE
Sbjct: 481 CKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNE 540
Query: 540 VTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDG 599
VTYNVLIEG+CREG +AFELLDEM KGL DTYTYR LI GLCS GRVSEAKEF++
Sbjct: 541 VTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFIND 600
Query: 600 LHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSD 659
LH +H +L+E+CY+ALL G+CKEGR+K+AL A +EMV RG+ MDLV Y+VLI G+L Q+D
Sbjct: 601 LHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQND 660
Query: 660 TRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTA 719
R F LL+EMH KG++PDNVIYT +ID K+GNLK+AF W IMIGEG VPN VTYTA
Sbjct: 661 -RILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTA 719
Query: 720 LINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGL 779
L+NGL KAGY+++A+LL K ML ++PN ITYGCFLD+LT+EG ME A+QLHNAML G
Sbjct: 720 LVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGS 779
Query: 780 LANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALK 839
ANTVTYNILI G+C +GKF+EA KLL M+ G++PDCITYST IY+YCKRG + A+
Sbjct: 780 FANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMD 839
Query: 840 LWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFPS 887
+W+ ML +GLKPD + +NFLI+ CC+ GE+ +A +LR+DMM RG+ P+
Sbjct: 840 MWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPT 887
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1121 bits (2899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/894 (60%), Positives = 702/894 (78%), Gaps = 10/894 (1%)
Query: 1 MKLTLSQRQVTSLKFHYKRRNLCTHRPFYSDNDE-----KESQFIDTLEKIIRGKQSWKL 55
MKL + R ++S Y RNL + + E ++ QF+D++ +I+RGK+SW++
Sbjct: 1 MKLPCTIRSLSSSHLRYSFRNLSS---VIDSSQEACRIGEDKQFVDSVRRIVRGKRSWEI 57
Query: 56 ALDDAVLSTALKPHHVEKVLIQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQN 115
AL ++S LK HVE++LI T+DD +L LRFFNFLGLH+ F+HSTASFCILIH LVQ
Sbjct: 58 ALSSELVSRRLKTIHVEEILIGTIDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVQA 117
Query: 116 NLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVF 175
NLFWPASSLLQTLLLR L P E FD+LF CYEK SSS FDLLIQ YV+++RV DGV
Sbjct: 118 NLFWPASSLLQTLLLRALKPSEVFDALFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVL 177
Query: 176 VFRLMREK-HLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSL 234
VF++M K L+PEVRTLS +L+GLVK R FGL ++LF+D++NVGI PD+YI++ V+RSL
Sbjct: 178 VFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSL 237
Query: 235 CELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADV 294
CELKD +AKEMI M++ G D+N+V YN+LI GLCK Q+V+EAV +K + +K DV
Sbjct: 238 CELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDV 297
Query: 295 VTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNK 354
VTYCTLV GLCKVQEFE G+ +++EM+ L PSEAAVSSLVEG R++GK+++A NLV +
Sbjct: 298 VTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKR 357
Query: 355 LGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGE 414
+ GV PN+FVYNALI+SLCK R F+EAE LF+ M + GL PN VTYSILID CRRG+
Sbjct: 358 VAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGK 417
Query: 415 MDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTS 474
+D A+SFLG+M D G+K ++YPYNSLI+GHCK G++SAAES EMI+K L PTV+TYTS
Sbjct: 418 LDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTS 477
Query: 475 LISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERN 534
L+ GYC++ K+NKA RLYHEMTGKGI P+ YTFT L+SGL RA + +A+K F EM E N
Sbjct: 478 LMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWN 537
Query: 535 VMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAK 594
V PN VTYNV+IEGYC EG M KAFE L+EM KG+V DTY+YR LI GLC G+ SEAK
Sbjct: 538 VKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAK 597
Query: 595 EFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGS 654
FVDGLH+ +C+LNE+CY+ LLHG+C+EG+L++AL C++M RGV++DLVCY VLIDGS
Sbjct: 598 VFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGS 657
Query: 655 LKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNV 714
LK D + + GLLKEMHD+GL+PD+VIYTSMIDAK K G+ KEAF +WD+MI EGCVPN
Sbjct: 658 LKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNE 717
Query: 715 VTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTRE-GKMEKAVQLHN 773
VTYTA+INGLCKAG++++AE+LC +M S+PNQ+TYGCFLD LT+ G M+KAV+LHN
Sbjct: 718 VTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHN 777
Query: 774 AMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGY 833
A+L GLLANT TYN+LI GFC G+ EEA++L+ M+ +G+ PDCITY+T+I + C+R
Sbjct: 778 AILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRND 837
Query: 834 LHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFPS 887
+ +A++LW+SM KG++PD +AYN LI+GCC+ GE+ KA ELR++M+R+G+ P+
Sbjct: 838 VKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPN 891
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like protein [Medicago truncatula] gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1102 bits (2851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/854 (60%), Positives = 663/854 (77%)
Query: 33 DEKESQFIDTLEKIIRGKQSWKLALDDAVLSTALKPHHVEKVLIQTLDDSRLALRFFNFL 92
+E ++ FI + I+RG SWK+A +D +S+ LKPHHVE+VLI TL DS+LALRFFNFL
Sbjct: 27 NENDTHFITHISDIVRGNLSWKIAFNDPSISSTLKPHHVEQVLINTLHDSKLALRFFNFL 86
Query: 93 GLHKTFNHSTASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFS 152
GLHK NH+T SF IL+H LVQN LFWPA+SLL TLLLRG PK F+ + +++ FS
Sbjct: 87 GLHKNMNHTTTSFAILVHALVQNKLFWPANSLLHTLLLRGSDPKFVFEKFLESHKQCKFS 146
Query: 153 SSLGFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLF 212
S+LGFD L+ SY+QN RV D V V RLM L+PEVRTLS +LNGL++IR+F LV ++F
Sbjct: 147 STLGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVF 206
Query: 213 EDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKS 272
++ VN G+ PD Y SAV+RSLCELKDF +AKE I +M+SN DL++V YN+LIHGLCK
Sbjct: 207 DESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKG 266
Query: 273 QRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAV 332
V EA+EV+ ++G+K DVVTYCTLVLG C+VQ+F+ G+ LMNEM+ELG VP+EAAV
Sbjct: 267 GGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAV 326
Query: 333 SSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQ 392
S LV+G R+KG ID A++LV KLG G +PNLFVYNALIN+LCK ++AE L+ M
Sbjct: 327 SGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHS 386
Query: 393 KGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSA 452
L N VTYSILIDS C+RG +D+A S+ G+M ++GI+ TIYPYNSLI+GHCK G+LSA
Sbjct: 387 MNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSA 446
Query: 453 AESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALIS 512
AE + +MI++GL PT T+T+LISGYC ++++ KAF+LY EM K IAP+ YTFTALI
Sbjct: 447 AEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIY 506
Query: 513 GLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVA 572
GLC N++ EA K FDEM+ER + P EVTYNV+IEGYC+ M KAFELL++M GLV
Sbjct: 507 GLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVP 566
Query: 573 DTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGAC 632
DTYTYR LI+GLCS GRVS AK+F+D LH+++ KLNEMCYSALLHGYC +GRL +AL A
Sbjct: 567 DTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSAS 626
Query: 633 REMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKA 692
EM++RG+NMDLVC++VLIDG++KQ D +R FGLLK+M+D+GLRPD+VIYTSMIDA K
Sbjct: 627 CEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKE 686
Query: 693 GNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITY 752
G+ K++ D+M+ E C PNVVTYTA +NGLCK G +D+A L ++ML + PN +TY
Sbjct: 687 GSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTY 746
Query: 753 GCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDN 812
GCFLD LT+EG M++A LH+ ML GLLANT TYNILI GFC +G+ EATK+L M +N
Sbjct: 747 GCFLDSLTKEGNMKEATDLHHEMLKGLLANTATYNILIRGFCKLGRLIEATKVLSEMTEN 806
Query: 813 GILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKA 872
GI PDCITYSTIIY++C+ G + A++LWD+ML KG++PD +A+N LIYGCC+ G + KA
Sbjct: 807 GIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKA 866
Query: 873 FELRDDMMRRGIFP 886
FELR+DM+ RG+ P
Sbjct: 867 FELRNDMLSRGLKP 880
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/798 (56%), Positives = 571/798 (71%), Gaps = 51/798 (6%)
Query: 1 MKLTLSQRQVTSLKFHYKRRNLCTHRPFYSDNDEKESQFIDTLEKIIRGKQSWKLALDDA 60
MK + +T+ F K+R C +SQF+ L I+RG QSW++AL+++
Sbjct: 1 MKFARHRPHLTNPNFLRKQRTFCA---------SPDSQFVACLTDIVRGNQSWRVALNNS 51
Query: 61 VLSTALKPHHVEKVLIQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNNLFWP 120
+S LKPHHVEKVLIQTLDDSRLALRFFNFLGLHK F+HST SFCILIH LVQ+NL+WP
Sbjct: 52 FISQTLKPHHVEKVLIQTLDDSRLALRFFNFLGLHKNFDHSTTSFCILIHALVQSNLYWP 111
Query: 121 ASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLM 180
ASSLLQTLLLRGL+P+ F+S D Y K FS++LGFDLLIQ+YVQN+R DG+ V RLM
Sbjct: 112 ASSLLQTLLLRGLNPEGLFESFLDSYRKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLM 171
Query: 181 REKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDF 240
+ ++P++RTLSGVLNGL++IRQF + L LF+++V+ G+ PD+Y+++AV+RSLCELKDF
Sbjct: 172 MDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDF 231
Query: 241 VKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTL 300
++A+E+I M+S+G DL+V YN+ I GLCK+QRV+EAVE+KN +G++ADV TYCTL
Sbjct: 232 IRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTL 291
Query: 301 VLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGV 360
VLGLCKV+EFE G +MNEMIE G VPSEAAVS+LV+G R+KG I AF+LVNK+ GV
Sbjct: 292 VLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGV 351
Query: 361 VPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVS 420
P+LFVYNALINS+CK+ K +EAE LFN M KGL PN VTYSILIDS C+RG++D+A+
Sbjct: 352 APSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALH 411
Query: 421 FLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYC 480
FLGKM + GIKAT+YPY+SLISGHCKLG L AA+S F+EMI GL P V+ YTSLISGYC
Sbjct: 412 FLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYC 471
Query: 481 NEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEV 540
E +L+ AFRLYHEMTGKGI+PN+YTFTALISGLC AN++ EA K F EM+E NV+PNEV
Sbjct: 472 KEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEV 531
Query: 541 TYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGL 600
TYNVLIEG+C+EG V+AFELLDEM KGLV DTYTYR LI+GLCS GRVSEA+EF++ L
Sbjct: 532 TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDL 591
Query: 601 HREHCKLNEM--------CYSALLHGYCKEGRLKDALGACREM----------------- 635
E KLNE+ Y+AL++G CK G + A CREM
Sbjct: 592 QGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLD 651
Query: 636 -------VERGVNM----------DLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPD 678
+E+ + + + V Y++LI G K + +L M D G+ PD
Sbjct: 652 YLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPD 711
Query: 679 NVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCK 738
+ Y+++I + G+LKEA +LW+ M+ G P+ V Y LI G C G + KA L
Sbjct: 712 CISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRD 771
Query: 739 EMLASGSLPNQITYGCFL 756
+M+ G PN+ TY +
Sbjct: 772 DMMRRGVKPNRATYNSLI 789
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/624 (62%), Positives = 475/624 (76%), Gaps = 17/624 (2%)
Query: 265 LIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEF----EFGVWLMNEM 320
L++GL + +R + + + + V V+ D+ Y +V LC++++F E W+
Sbjct: 102 LLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQ 161
Query: 321 IELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKF 380
+L +V + L+ G + +I +A + N L G+ N+ Y KF
Sbjct: 162 CKLSIV----VYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYG---------KF 208
Query: 381 NEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSL 440
NEAE LF EM +KGL N +TYSILIDS CRRGEMD A+ FL KM I+ T+YPYNSL
Sbjct: 209 NEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSL 268
Query: 441 ISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGI 500
I+G+CKLGN SAA+ +F+EMI KGLTPTV+TYTSLISGYCNE + +KAF++Y+EMT KGI
Sbjct: 269 INGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGI 328
Query: 501 APNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFE 560
+PN+YTFTA+ISGLCRAN + EAI+ F EM ER +MP+EVTYNV+IEG+CR G + +AF
Sbjct: 329 SPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFH 388
Query: 561 LLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYC 620
LLDEM GKG V DTYTYR LI+GLCS GRVSEAKEFVD LH++H KLN MCYSAL+HGYC
Sbjct: 389 LLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYC 448
Query: 621 KEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNV 680
KEGR KDA+ ACR MVERGV MDLVCY++LIDG+ ++ DTR FGLLKEMH+ GLRPD V
Sbjct: 449 KEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAV 508
Query: 681 IYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEM 740
IYT+MID KAGNLKEAF LWDIM+ EGC+PNVVTYTALINGLCKAG MDKAELL KE
Sbjct: 509 IYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKET 568
Query: 741 LASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFE 800
L S PN ITYGCFLD+LTR G MEKAVQLH+AML G LA TV+YNILI GFC +GK E
Sbjct: 569 LVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATTVSYNILIRGFCRLGKIE 628
Query: 801 EATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLI 860
EATKLL GM DN ILPD ITYSTIIY+ CKR L EA+KLW +ML+KGLKPD LAY+FL+
Sbjct: 629 EATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLV 688
Query: 861 YGCCIRGEITKAFELRDDMMRRGI 884
+GCCI GE+ KAFELRD+M+RRG+
Sbjct: 689 HGCCIAGELEKAFELRDEMIRRGM 712
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/726 (47%), Positives = 487/726 (67%)
Query: 162 QSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGIL 221
SY++ +R D V L + P+ T S +L LVKIRQF L LF+ +++ G+L
Sbjct: 135 SSYLRLRRARDAAAVLHLSLSAGIAPDQHTASQILFSLVKIRQFALARHLFDGMLHSGVL 194
Query: 222 PDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEV 281
D Y+++A +R+ CE+++ AK ++ M G ++ V YN+LI+GLCK+QRV EAV+V
Sbjct: 195 LDEYVYTAGIRAYCEVRNLDGAKGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDV 254
Query: 282 KNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRR 341
KN + RGV AD VT TLV G C+ +E + + + +M LG VPSEA S +++G R+
Sbjct: 255 KNSMLARGVAADEVTCRTLVYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRK 314
Query: 342 KGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVT 401
KG++++AF L +LG L +VPN+F YNAL+N++CK F+EA+ L NEM KGL PN VT
Sbjct: 315 KGRVEEAFRLACQLGELRMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVT 374
Query: 402 YSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMI 461
Y+ILI SLC+RG MD A+ L +M ++G++ T+YPYNSLI+ CK +L A F EM+
Sbjct: 375 YAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMV 434
Query: 462 HKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLT 521
GLTP +Y+ +I+G C + L+ A L+ +M KG+A N+YTFTALI+G C+A K+
Sbjct: 435 EIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMD 494
Query: 522 EAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLI 581
EA + F++M E N+ PNEVT+N +IEGYC G + KAF+L D+M +GL D YTYRSLI
Sbjct: 495 EASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLI 554
Query: 582 TGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVN 641
+GLC S+AKEFV L LN+ +ALLHG+C+EGRL +A EM G
Sbjct: 555 SGLCLTDGASKAKEFVADLENNCSVLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGK 614
Query: 642 MDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRL 701
+DL+ +++++ +LKQ D+ + L +EM +KG+RPDNV +T MI+ K GN+ +A
Sbjct: 615 LDLISFTIIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQALNC 674
Query: 702 WDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTR 761
WD MI +G +PN VTYTAL+N LCK+ ++ AELLCKEMLAS LPN T+ CFLDY
Sbjct: 675 WDEMIADGHLPNTVTYTALVNNLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFAT 734
Query: 762 EGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITY 821
EG +E A L+ AML G LAN V+ N LI GFC +G+ +EA L+ +NG PDCI+Y
Sbjct: 735 EGNLETAKDLYFAMLQGFLANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISY 794
Query: 822 STIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMR 881
ST+I++ CK+G ++EA++LW+ ML KG+KPD +AYN LI C I GE K + DM++
Sbjct: 795 STVIHELCKKGDINEAIELWNEMLYKGVKPDIVAYNILIRWCNIHGESDKCLGIYIDMVK 854
Query: 882 RGIFPS 887
+G+ P+
Sbjct: 855 KGVQPN 860
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 890 | ||||||
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.994 | 0.975 | 0.602 | 1.3e-299 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.960 | 0.877 | 0.268 | 1e-84 | |
| TAIR|locus:2165585 | 971 | AT5G57250 [Arabidopsis thalian | 0.833 | 0.764 | 0.278 | 1.7e-84 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.605 | 0.589 | 0.354 | 3.9e-83 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.668 | 0.796 | 0.318 | 2e-81 | |
| TAIR|locus:2082727 | 851 | AT3G54980 [Arabidopsis thalian | 0.788 | 0.824 | 0.287 | 2e-81 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.760 | 0.887 | 0.293 | 2.5e-81 | |
| TAIR|locus:2016427 | 904 | AT1G19290 [Arabidopsis thalian | 0.888 | 0.875 | 0.27 | 2.5e-81 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.594 | 0.725 | 0.300 | 8.3e-81 | |
| TAIR|locus:2098495 | 880 | AT3G07290 "AT3G07290" [Arabido | 0.629 | 0.636 | 0.317 | 5.8e-80 |
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2876 (1017.5 bits), Expect = 1.3e-299, P = 1.3e-299
Identities = 538/893 (60%), Positives = 695/893 (77%)
Query: 1 MKLTLSQRQVTSLKFHYKRRNLCTHRPFYSDNDE----KESQFIDTLEKIIRGKQSWKLA 56
MKL + R +TS F RN+ + S +E ++ QF+D +++I+RGK+SW++A
Sbjct: 1 MKLPCTIRSITSSHFRNSFRNVSS--VIDSAQEECRIAEDKQFVDAVKRIVRGKRSWEIA 58
Query: 57 LDDAVLSTALKPHHVEKVLIQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNN 116
L ++S LK HVE++LI T+DD +L LRFFNFLGLH+ F+HSTASFCILIH LV+ N
Sbjct: 59 LSSELVSRRLKTVHVEEILIGTIDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKAN 118
Query: 117 LFWPAXXXXXXXXXXXXXPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFV 176
LFWPA P + F+ LF CYEK SSS FDLLIQ YV+++RV DGV V
Sbjct: 119 LFWPASSLLQTLLLRALKPSDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLV 178
Query: 177 FRLMREK-HLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLC 235
F++M K L+PEVRTLS +L+GLVK R FGL ++LF D+V+VGI PD+YI++ V+RSLC
Sbjct: 179 FKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLC 238
Query: 236 ELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVV 295
ELKD +AKEMI M++ G D+N+V YN+LI GLCK Q+V+EAV +K + +K DVV
Sbjct: 239 ELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVV 298
Query: 296 TYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKL 355
TYCTLV GLCKVQEFE G+ +M+EM+ L PSEAAVSSLVEG R++GKI++A NLV ++
Sbjct: 299 TYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRV 358
Query: 356 GPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEM 415
GV PNLFVYNALI+SLCK RKF+EAE LF+ M + GL PN VTYSILID CRRG++
Sbjct: 359 VDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKL 418
Query: 416 DIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSL 475
D A+SFLG+M D G+K ++YPYNSLI+GHCK G++SAAE F EMI+K L PTV+TYTSL
Sbjct: 419 DTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL 478
Query: 476 ISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNV 535
+ GYC++ K+NKA RLYHEMTGKGIAP+ YTFT L+SGL RA + +A+K F+EM E NV
Sbjct: 479 MGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNV 538
Query: 536 MPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKE 595
PN VTYNV+IEGYC EG M KAFE L EM KG+V DTY+YR LI GLC G+ SEAK
Sbjct: 539 KPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKV 598
Query: 596 FVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSL 655
FVDGLH+ +C+LNE+CY+ LLHG+C+EG+L++AL C+EMV+RGV++DLVCY VLIDGSL
Sbjct: 599 FVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSL 658
Query: 656 KQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVV 715
K D + +FGLLKEMHD+GL+PD+VIYTSMIDAK K G+ KEAF +WD+MI EGCVPN V
Sbjct: 659 KHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEV 718
Query: 716 TYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTR-EGKMEKAVQLHNA 774
TYTA+INGLCKAG++++AE+LC +M S+PNQ+TYGCFLD LT+ E M+KAV+LHNA
Sbjct: 719 TYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNA 778
Query: 775 MLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYL 834
+L GLLANT TYN+LI GFC G+ EEA++L+ M+ +G+ PDCITY+T+I + C+R +
Sbjct: 779 ILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDV 838
Query: 835 HEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFPS 887
+A++LW+SM KG++PD +AYN LI+GCC+ GE+ KA ELR++M+R+G+ P+
Sbjct: 839 KKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891
|
|
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 237/882 (26%), Positives = 404/882 (45%)
Query: 17 YKRRNLCTHRPF-----YSDNDEKESQFIDTLEKIIRGKQSWKLALDDAVLSTALKPHHV 71
+++R L T F +S N EK S + I++ +++W+ L + LS + P V
Sbjct: 7 FRKRTLVTRANFLLFRSFSVNVEKLSDASAEIAGILK-QENWRDTLVSSNLSIEINPEVV 65
Query: 72 EKVL-IQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNNLFWPAXXXXXXXXX 130
VL + +DD L FFN++ K SF L L F A
Sbjct: 66 LSVLRSKRVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIE 125
Query: 131 XXXXPKEAFDSLFDCYEKFGFSSSLG--FDLLIQSYVQNKRVADGVFVFRLMREKHLMPE 188
E + S+ C ++F S G F +L Y+ + + VFVF L+P
Sbjct: 126 RNWPVAEVWSSIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPR 185
Query: 189 VRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIH 248
+ +L+ L++ + L +++ +V ++ D+ + ++ + C + K+++
Sbjct: 186 LSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLF 245
Query: 249 FMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQ 308
+ + N+ G A+++K + +G+ TY L+ GLCK++
Sbjct: 246 KTEK---EFRTATLNV--DG---------ALKLKESMICKGLVPLKYTYDVLIDGLCKIK 291
Query: 309 EFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYN 368
E L+ EM LG+ S L++G + D A LV+++ G+ ++Y+
Sbjct: 292 RLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYD 351
Query: 369 ALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADE 428
I + KE +A+ LF+ M GL P Y+ LI+ CR + L +M
Sbjct: 352 CCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKR 411
Query: 429 GIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKA 488
I + Y Y +++ G C G+L A + +EMI G P V+ YT+LI + + A
Sbjct: 412 NIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDA 471
Query: 489 FRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEG 548
R+ EM +GIAP+ + + +LI GL +A ++ EA + EM+E + PN TY I G
Sbjct: 472 MRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISG 531
Query: 549 YCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLN 608
Y A + + EM G++ + LI C G+V EA + + +
Sbjct: 532 YIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGD 591
Query: 609 EMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLK 668
Y+ L++G K ++ DA REM +G+ D+ Y VLI+G K + ++ +
Sbjct: 592 AKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651
Query: 669 EMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAG 728
EM ++GL P+ +IY ++ ++G +++A L D M +G PN VTY +I+G CK+G
Sbjct: 652 EMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSG 711
Query: 729 YMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNI 788
+ +A L EM G +P+ Y +D R +E+A+ + G ++T +N
Sbjct: 712 DLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNA 771
Query: 789 LIHGFCTMGKFEEATKLLGGMMDNGI----LPDCITYSTIIYQYCKRGYLHEALKLWDSM 844
LI+ GK E T++L +MD P+ +TY+ +I CK G L A +L+ M
Sbjct: 772 LINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQM 831
Query: 845 LNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFP 886
N L P + Y L+ G G + F + D+ + GI P
Sbjct: 832 QNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEP 873
|
|
| TAIR|locus:2165585 AT5G57250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 213/765 (27%), Positives = 394/765 (51%)
Query: 135 PKEAFDSLFDCYEKFG-FSSSLGFDLLIQSYVQNKRVADGVFVFRLMREKHL-MP-EVRT 191
P + L DC G F SSL F LI +V+ + + + V +M K++ P +
Sbjct: 114 PSKGLLILRDCLRNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFV 173
Query: 192 LSGVLNGLVKIRQFGLVLKLFEDVVNVGIL-PDIYIHSAVMRSLCELKDFVKAKEMIHFM 250
S V++G KI + L L FE V+ G+L P++ ++ ++ +LC+L + ++++ +
Sbjct: 174 CSAVISGFCKIGKPELALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRL 233
Query: 251 DSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEF 310
+ G + + V Y+ IHG K + +A+ V++G+ DVV+Y L+ GL K
Sbjct: 234 EDEGFEFDCVFYSNWIHGYFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNV 293
Query: 311 EFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNAL 370
E + L+ +MI+ G+ P+ ++++ G + GK+++AF L N++ +G+ + F+Y L
Sbjct: 294 EEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTL 353
Query: 371 INSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGI 430
I+ +C++ N A + +M+Q+G+ P+++TY+ +I+ LC G + A +G+
Sbjct: 354 IDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEADE-----VSKGV 408
Query: 431 KATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFR 490
+ Y++L+ + K+ N+ A + + ++ L+ + +A
Sbjct: 409 VGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADA 468
Query: 491 LYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYC 550
LY M + P++ T+ +I G C+ ++ EA++ F+E+ + +V V YN +I+ C
Sbjct: 469 LYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSA-AVCYNRIIDALC 527
Query: 551 REGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLN-E 609
++G + A E+L E+ KGL D +T R+L+ + + G V GL + + +
Sbjct: 528 KKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLNSDVCLG 587
Query: 610 MCYSALLHGYCKEGRLKDALGACREMVERGVNMDL--VCYSVLIDGSLKQSDTRRYFGLL 667
M A+L CK G + A+ M +G+ + L+D +L+ D Y L+
Sbjct: 588 MLNDAILL-LCKRGSFEAAIEVYMIMRRKGLTVTFPSTILKTLVD-NLRSLDA--YL-LV 642
Query: 668 KEMHDKGLRPDNVI-YTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCK 726
+ L +VI YT +I+ K G L +A L G N +TY +LINGLC+
Sbjct: 643 VNAGETTLSSMDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQ 702
Query: 727 AGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLD-GLLANTVT 785
G + +A L + G +P+++TYG +D L +EG A +L ++M+ GL+ N +
Sbjct: 703 QGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIII 762
Query: 786 YNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSML 845
YN ++ G+C +G+ E+A +++ M + PD T S++I YCK+G + EAL ++
Sbjct: 763 YNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFK 822
Query: 846 NKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFPSLVK 890
+K + D + FLI G C +G + +A L +M+ + S+VK
Sbjct: 823 DKNISADFFGFLFLIKGFCTKGRMEEARGLLREML---VSESVVK 864
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 194/548 (35%), Positives = 292/548 (53%)
Query: 341 RKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVV 400
RK D+ F L KL +G YN L+NSL + +E + ++ EM + + PN+
Sbjct: 167 RKMNKDERFELKYKL-IIGC------YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIY 219
Query: 401 TYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEM 460
TY+ +++ C+ G ++ A ++ K+ + G+ + Y SLI G+C+ +L +A F EM
Sbjct: 220 TYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM 279
Query: 461 IHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKL 520
KG + YT LI G C ++++A L+ +M P T+T LI LC + +
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERK 339
Query: 521 TEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSL 580
+EA+ EM E + PN TY VLI+ C + KA ELL +M KGL+ + TY +L
Sbjct: 340 SEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNAL 399
Query: 581 ITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGV 640
I G C G + +A + V+ + N Y+ L+ GYCK K A+G +M+ER V
Sbjct: 400 INGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHK-AMGVLNKMLERKV 458
Query: 641 NMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFR 700
D+V Y+ LIDG + + + LL M+D+GL PD YTSMID+ K+ ++EA
Sbjct: 459 LPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACD 518
Query: 701 LWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLT 760
L+D + +G PNVV YTALI+G CKAG +D+A L+ ++ML+ LPN +T+ + L
Sbjct: 519 LFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLC 578
Query: 761 REGKMEKAVQLHNAMLD-GLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCI 819
+GK+++A L M+ GL T ILIH G F+ A M+ +G PD
Sbjct: 579 ADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAH 638
Query: 820 TYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDM 879
TY+T I YC+ G L +A + M G+ PD Y+ LI G G+ AF++ M
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698
Query: 880 MRRGIFPS 887
G PS
Sbjct: 699 RDTGCEPS 706
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 195/612 (31%), Positives = 320/612 (52%)
Query: 226 IHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVE-VKNG 284
+ V++S L KA ++H ++G V+ YN ++ +S+R E V
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195
Query: 285 FVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGK 344
++ V +V TY L+ G C + + L ++M G +P+ ++L++G+ + K
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 345 IDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSI 404
IDD F L+ + G+ PNL YN +IN LC+E + E F+ EM ++G S + VTY+
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNT 315
Query: 405 LIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKG 464
LI C+ G A+ +M G+ ++ Y SLI CK GN++ A F ++M +G
Sbjct: 316 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 465 LTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAI 524
L P TYT+L+ G+ + +N+A+R+ EM G +P+ T+ ALI+G C K+ +AI
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435
Query: 525 KWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGL 584
++M E+ + P+ V+Y+ ++ G+CR + +A + EM KG+ DT TY SLI G
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 585 CSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDL 644
C R EA + + + R +E Y+AL++ YC EG L+ AL EMVE+GV D+
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 645 VCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMID-------------AKG- 690
V YSVLI+G KQS TR LL ++ + P +V Y ++I+ KG
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGF 615
Query: 691 -KAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQ 749
G + EA ++++ M+G+ P+ Y +I+G C+AG + KA L KEM+ SG L +
Sbjct: 616 CMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHT 675
Query: 750 ITYGCFLDYLTREGKMEKAVQLHNAMLDGL-LANTVTYNILIHGFCTMGKFEEATKLLGG 808
+T + L +EGK+ + + +L L+ +L+ G + +L
Sbjct: 676 VTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAE 735
Query: 809 MMDNGILPDCIT 820
M +G LP+ I+
Sbjct: 736 MAKDGFLPNGIS 747
|
|
| TAIR|locus:2082727 AT3G54980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 205/714 (28%), Positives = 366/714 (51%)
Query: 158 DLLIQSYVQ--NKRVADGVFVFRLMRE-KHLMPEV--RTLSGVLNGLVKIRQFGLVLKLF 212
DLLI+ YV N V V +L+ K EV R + +LN K RQ + +
Sbjct: 128 DLLIR-YVSTSNPTPMASVLVSKLVDSAKSFGFEVNSRAFNYLLNAYSKDRQTDHAVDIV 186
Query: 213 EDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKS 272
++ + ++P + + +L + +AKE+ M + G D + V +L+ +
Sbjct: 187 NQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLRE 246
Query: 273 QRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGL-VPSEAA 331
++ EA+EV + ++RG + D + Y V CK + L+ EM E L VPS+
Sbjct: 247 EKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQET 306
Query: 332 VSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMK 391
+S++ ++G +DDA L +++ G+ N+ +LI CK A LF++M+
Sbjct: 307 YTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKME 366
Query: 392 QKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLS 451
++G SPN VT+S+LI+ + GEM+ A+ F KM G+ +++ +++I G K
Sbjct: 367 KEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHE 426
Query: 452 AAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALI 511
A F+E GL V +++S C + K ++A L +M +GI PN ++ ++
Sbjct: 427 EALKLFDESFETGLA-NVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVM 485
Query: 512 SGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLV 571
G CR + A F +LE+ + PN TY++LI+G R A E+++ M +
Sbjct: 486 LGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIE 545
Query: 572 ADTYTYRSLITGLCSAGRVSEAKEFVDGLHREH--CKLNEMCYSALLHGYCKEGRLKDAL 629
+ Y+++I GLC G+ S+A+E + + E C ++ M Y++++ G+ KEG + A+
Sbjct: 546 VNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLC-VSCMSYNSIIDGFFKEGEMDSAV 604
Query: 630 GACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAK 689
A EM G++ +++ Y+ L++G K + + + EM +KG++ D Y ++ID
Sbjct: 605 AAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGF 664
Query: 690 GKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQ 749
K N++ A L+ ++ EG P+ Y +LI+G G M A L K+ML G +
Sbjct: 665 CKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDL 724
Query: 750 ITYGCFLDYLTREGKMEKAVQLHNAMLD-GLLANTVTYNILIHGFCTMGKFEEATKLLGG 808
TY +D L ++G + A +L+ M GL+ + + Y ++++G G+F + K+
Sbjct: 725 GTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEE 784
Query: 809 MMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYG 862
M N + P+ + Y+ +I + + G L EA +L D ML+KG+ PD ++ L+ G
Sbjct: 785 MKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSG 838
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 202/689 (29%), Positives = 338/689 (49%)
Query: 137 EAFDS-LFDCYEKFGFSSSLGFDL-LIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSG 194
EA + L D E G G + +++Y + +V + V VF M P V + +
Sbjct: 57 EAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNA 116
Query: 195 VLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNG 254
+++ LV F K++ + + GI PD+Y + M+S C+ A +++ M S G
Sbjct: 117 IMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQG 176
Query: 255 SDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGV 314
++NVV Y ++ G + E E+ + GV + T+ L+ LCK + +
Sbjct: 177 CEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECE 236
Query: 315 WLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSL 374
L++++I+ G++P+ + ++G ++G++D A +V L G P++ YN LI L
Sbjct: 237 KLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGL 296
Query: 375 CKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATI 434
CK KF EAE +M +GL P+ TY+ LI C+ G + +A +G G
Sbjct: 297 CKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQ 356
Query: 435 YPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHE 494
+ Y SLI G C G + A + F E + KG+ P VI Y +LI G N+ + +A +L +E
Sbjct: 357 FTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANE 416
Query: 495 MTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGC 554
M+ KG+ P TF L++GLC+ +++A M+ + P+ T+N+LI GY +
Sbjct: 417 MSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLK 476
Query: 555 MVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSA 614
M A E+LD M G+ D YTY SL+ GLC + + E + + C N ++
Sbjct: 477 MENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNI 536
Query: 615 LLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDK- 673
LL C+ +L +ALG EM + VN D V + LIDG K D + L ++M +
Sbjct: 537 LLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAY 596
Query: 674 GLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKA 733
+ Y +I A + N+ A +L+ M+ P+ TY +++G CK G ++
Sbjct: 597 KVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLG 656
Query: 734 ELLCKEMLASGSLPNQITYGCFLDYLTREGKM-EKAVQLHNAMLDGLLANTVTYNILIHG 792
EM+ +G +P+ T G ++ L E ++ E A +H + GL+ V N +
Sbjct: 657 YKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAV--NTI--- 711
Query: 793 FCTMGKFEEATKLLGGMMDNGILPDCITY 821
C + K E A L ++++ + CITY
Sbjct: 712 -CDVDKKEVAAPKL--VLEDLLKKSCITY 737
|
|
| TAIR|locus:2016427 AT1G19290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 216/800 (27%), Positives = 378/800 (47%)
Query: 56 ALDDAVLSTALKPHHVEKVLIQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQN 115
AL D LS + +L + + L FN + F ++C ++H L +
Sbjct: 60 ALHD--LSLDFSDELLNSILRRLRLNPEACLEIFNLASKQQKFRPDYKAYCKMVHILSRA 117
Query: 116 NLFWPAXXXXXXXXXXXXXPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVF 175
+ + L +++F FS ++ FD++++ Y + V + +
Sbjct: 118 RNYQQTKSYLCELVALNHSGFVVWGELVRVFKEFSFSPTV-FDMILKVYAEKGLVKNALH 176
Query: 176 VFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLC 235
VF M +P + + + +L+ LV+ + + L +++ +++ + PD++ S V+ + C
Sbjct: 177 VFDNMGNYGRIPSLLSCNSLLSNLVRKGENFVALHVYDQMISFEVSPDVFTCSIVVNAYC 236
Query: 236 ELKDFVKAKEMIHFMDSN-GSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADV 294
+ KA +S+ G +LNVV YN LI+G V V +RGV +V
Sbjct: 237 RSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNV 296
Query: 295 VTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNK 354
VTY +L+ G CK E + + E LV + L++G+ R G+I DA + +
Sbjct: 297 VTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDN 356
Query: 355 LGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGE 414
+ +GV N + N+LIN CK + EAE +F+ M L P+ TY+ L+D CR G
Sbjct: 357 MIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGY 416
Query: 415 MDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTS 474
+D A+ +M + + T+ YN L+ G+ ++G S ++ M+ +G+ I+ ++
Sbjct: 417 VDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCST 476
Query: 475 LISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERN 534
L+ N+A +L+ + +G+ ++ T +ISGLC+ K+ EA + D +
Sbjct: 477 LLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFR 536
Query: 535 VMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAK 594
P TY L GY + G + +AF + + M KG+ Y +LI+G +++
Sbjct: 537 CKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVA 596
Query: 595 EFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGS 654
+ V L Y AL+ G+C G + A C EM+E+G+ +++ S + +
Sbjct: 597 DLVIELRARGLTPTVATYGALITGWCNIGMIDKAYATCFEMIEKGITLNVNICSKIANSL 656
Query: 655 LKQSDTRRYFGLLKEMHDKGLR-PDNVIYTSMIDAKGKA--GNLKEAFRLWDIMIGEGCV 711
+ LL+++ D L P ++A K A + + + V
Sbjct: 657 FRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLV 716
Query: 712 PNVVTYTALINGLCKAGYMDKAELLCKEMLASGS-LPNQITYGCFLDYLTREGKMEKAVQ 770
PN + Y I GLCKAG ++ A L ++L+S +P++ TY + G + KA
Sbjct: 717 PNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFT 776
Query: 771 LHNAM-LDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYC 829
L + M L G++ N VTYN LI G C +G + A +LL + GI P+ ITY+T+I
Sbjct: 777 LRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLV 836
Query: 830 KRGYLHEALKLWDSMLNKGL 849
K G + EA++L + M+ KGL
Sbjct: 837 KSGNVAEAMRLKEKMIEKGL 856
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 788 (282.4 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
Identities = 160/532 (30%), Positives = 291/532 (54%)
Query: 324 GLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEA 383
G S A ++L+ R G ++ A+ + ++ GV N++ N ++N+LCK+ K +
Sbjct: 195 GFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKV 254
Query: 384 EFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISG 443
+++++KG+ P++VTY+ LI + +G M+ A + M +G +Y YN++I+G
Sbjct: 255 GTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVING 314
Query: 444 HCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPN 503
CK G A+ F EM+ GL+P TY SL+ C + + + +++ +M + + P+
Sbjct: 315 LCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPD 374
Query: 504 SYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLD 563
F++++S R+ L +A+ +F+ + E ++P+ V Y +LI+GYCR+G + A L +
Sbjct: 375 LVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRN 434
Query: 564 EMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEG 623
EM +G D TY +++ GLC + EA + + + + + L+ G+CK G
Sbjct: 435 EMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLG 494
Query: 624 RLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYT 683
L++A+ ++M E+ + +D+V Y+ L+DG K D + +M K + P + Y+
Sbjct: 495 NLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYS 554
Query: 684 SMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLAS 743
+++A G+L EAFR+WD MI + P V+ ++I G C++G E ++M++
Sbjct: 555 ILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISE 614
Query: 744 GSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLD---GLLANTVTYNILIHGFCTMGKFE 800
G +P+ I+Y + RE M KA L M + GL+ + TYN ++HGFC + +
Sbjct: 615 GFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMK 674
Query: 801 EATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD 852
EA +L M++ G+ PD TY+ +I + + L EA ++ D ML +G PD
Sbjct: 675 EAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
|
|
| TAIR|locus:2098495 AT3G07290 "AT3G07290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 759 (272.2 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 179/564 (31%), Positives = 291/564 (51%)
Query: 233 SLCELKDFVKAKEMI-HFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVK 291
S CE K+ +K + G LN Y+ L+ L K F A G
Sbjct: 134 SRCE-KEMLKLMYCFDELREVFGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFV 192
Query: 292 ADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNL 351
++ Y T+V LCK E M++++++G V +SL+ GF R + DA +
Sbjct: 193 VGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKV 252
Query: 352 VNKLGP-LGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLC 410
+ + + PN Y+ LI+ LC+ + EA L ++M +KG P+ TY++LI +LC
Sbjct: 253 FDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALC 312
Query: 411 RRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVI 470
RG +D A + +M G K ++ Y LI G C+ G + A +M+ + P+VI
Sbjct: 313 DRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVI 372
Query: 471 TYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEM 530
TY +LI+GYC + ++ AF L M + PN TF L+ GLCR K +A+ M
Sbjct: 373 TYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRM 432
Query: 531 LERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRV 590
L+ + P+ V+YNVLI+G CREG M A++LL M + D T+ ++I C G+
Sbjct: 433 LDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKA 492
Query: 591 SEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVL 650
A F+ + R+ L+E+ + L+ G CK G+ +DAL +V+ + +V+
Sbjct: 493 DVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVI 552
Query: 651 IDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGC 710
+D K + +L +++ GL P V YT+++D ++G++ +FR+ ++M GC
Sbjct: 553 LDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGC 612
Query: 711 VPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQ 770
+PNV YT +INGLC+ G +++AE L M SG PN +TY + GK+++A++
Sbjct: 613 LPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALE 672
Query: 771 LHNAMLD-GLLANTVTYNILIHGF 793
AM++ G N Y+ L+ GF
Sbjct: 673 TVRAMVERGYELNDRIYSSLLQGF 696
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FJE6 | PP437_ARATH | No assigned EC number | 0.6147 | 0.9943 | 0.9757 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 890 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-47 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-28 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-27 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-24 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-22 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-22 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-20 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam12726 | 724 | pfam12726, SEN1_N, SEN1 N terminal | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 1e-47
Identities = 119/443 (26%), Positives = 206/443 (46%), Gaps = 10/443 (2%)
Query: 367 YNALINSLCKERKFNEAEFLFNEMKQKG-LSPNVVTYSILIDSLCRRGEMDIAVSFLGKM 425
Y N L ++ + + L +M+++G L + + ++ + ++ + A F +
Sbjct: 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432
Query: 426 ADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKL 485
+ T+ +N L+S ++ A + GL YT+LIS K+
Sbjct: 433 RN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 486 NKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVL 545
+ F ++HEM G+ N +TF ALI G RA ++ +A + M +NV P+ V +N L
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 546 IEGYCREGCMVKAFELLDEMAG--KGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHRE 603
I + G + +AF++L EM + D T +L+ +AG+V AKE +H
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 604 HCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRY 663
+ K Y+ ++ ++G AL +M ++GV D V +S L+D + D +
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 664 FGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALING 723
F +L++ +G++ V Y+S++ A A N K+A L++ + P V T ALI
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 724 LCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHN-AMLDGLLAN 782
LC+ + KA + EM G PN ITY L R+ + + L + A DG+ N
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 783 TVTYNILIHGFCTMGKFEEATKL 805
V + G C + +FE+A L
Sbjct: 789 LVMCRCIT-GLC-LRRFEKACAL 809
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 4e-28
Identities = 155/668 (23%), Positives = 282/668 (42%), Gaps = 49/668 (7%)
Query: 153 SSLGFDL---LIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVL 209
SLG L ++ +V+ + +VF M E+ L + + ++ G K F L
Sbjct: 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLF----SWNVLVGGYAKAGYFDEAL 172
Query: 210 KLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGL 269
L+ ++ G+ PD+Y V+R+ + D + +E+ + G +L+V V N LI
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232
Query: 270 CKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSE 329
K V A V + +R D +++ ++ G + E G+ L M EL + P
Sbjct: 233 VKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288
Query: 330 AAVSSLVE-----GFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAE 384
++S++ G R G+ + V K G ++ V N+LI + EAE
Sbjct: 289 MTITSVISACELLGDERLGR--EMHGYVVK---TGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 385 FLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGH 444
+F+ M+ K + V+++ +I + G D A+ M + + S++S
Sbjct: 344 KVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 445 CKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNS 504
LG+L E KGL V+ +LI Y ++KA ++H + K +
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DV 455
Query: 505 YTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDE 564
++T++I+GL N+ EA+ +F +ML + PN VT + R G ++ E+
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAH 514
Query: 565 MAGKGLVADTYTYRSLITGLCSAGRVSEA-KEFVDGLHREHCKLNEMCYSALLHGYCKEG 623
+ G+ D + +L+ GR++ A +F + + + ++ LL GY G
Sbjct: 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF------NSHEKDVVSWNILLTGYVAHG 568
Query: 624 RLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDK-GLRPDNVIY 682
+ A+ MVE GVN D V + L+ + + M +K + P+ Y
Sbjct: 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628
Query: 683 TSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLA 742
++D G+AG L EA+ + M P+ + AL+N +++ EL + +
Sbjct: 629 ACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFE 685
Query: 743 SGSLPNQITYGCFL-DYLTREGKMEKAVQLHNAMLD-GLLANT----VTYNILIHGFCTM 796
PN + Y L + GK ++ ++ M + GL + V +H F T
Sbjct: 686 LD--PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTD 743
Query: 797 GKFEEATK 804
+ K
Sbjct: 744 DESHPQIK 751
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 3e-27
Identities = 85/363 (23%), Positives = 164/363 (45%), Gaps = 15/363 (4%)
Query: 231 MRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGV 290
M +D A ++ + G + +Y LI KS +V EV + V GV
Sbjct: 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV 503
Query: 291 KADVVTYCTLVLGLCKVQEF--EFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDA 348
+A+V T+ L+ G + + FG + + M + P ++L+ + G +D A
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGI--MRSKNVKPDRVVFNALISACGQSGAVDRA 561
Query: 349 FNLVNKLG----PLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSI 404
F+++ ++ P + P+ AL+ + + + A+ ++ + + + Y+I
Sbjct: 562 FDVLAEMKAETHP--IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 405 LIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLI--SGHCKLGNLSAAESFFEEMIH 462
++S ++G+ D A+S M +G+K +++L+ +GH L A ++
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD--LDKAFEILQDARK 677
Query: 463 KGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTE 522
+G+ ++Y+SL+ N KA LY ++ + P T ALI+ LC N+L +
Sbjct: 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737
Query: 523 AIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLIT 582
A++ EM + PN +TY++L+ R+ +LL + G+ + R IT
Sbjct: 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC-IT 796
Query: 583 GLC 585
GLC
Sbjct: 797 GLC 799
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-24
Identities = 116/524 (22%), Positives = 201/524 (38%), Gaps = 103/524 (19%)
Query: 371 INSLCKERKFNEAEFLFNEMKQKG-LSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEG 429
I L + EA LF ++ + TY L+++ + + + G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 430 IKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAF 489
+ Y N ++ H K G L A F+EM + L ++ ++I G + +AF
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAF 209
Query: 490 RLYHEMTGKGIAPNSYTFTALI-----SGLCRANK------------------------- 519
L+ EM G TF ++ G RA +
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269
Query: 520 -----LTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADT 574
+ +A FD M E+ V +N ++ GY G +A L EM G+ D
Sbjct: 270 SKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 575 YTYRSLITGLCSA-GRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACR 633
+T+ S++ + S + AK+ GL R L+ + +AL+ Y K GR++DA R
Sbjct: 326 FTF-SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA----R 380
Query: 634 EMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAG 693
+ +R +L+ ++ LI G G G
Sbjct: 381 NVFDRMPRKNLISWNALIAGY-----------------------------------GNHG 405
Query: 694 NLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLAS-GSLPNQITY 752
+A +++ MI EG PN VT+ A+++ +G ++ + + M + P + Y
Sbjct: 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465
Query: 753 GCFLDYLTREGKMEKAVQLHNAMLDGLLANTVT-YNIL-----IHGFCTMGKFEEATKLL 806
C ++ L REG +++A + + TV + L IH +G+ A KL
Sbjct: 466 ACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAALLTACRIHKNLELGRL-AAEKLY 521
Query: 807 GGMMDNGILPDCI-TYSTIIYQYCKRGYLHEALKLWDSMLNKGL 849
G M P+ + Y ++ Y G EA K+ +++ KGL
Sbjct: 522 G--MG----PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 3e-23
Identities = 146/673 (21%), Positives = 271/673 (40%), Gaps = 132/673 (19%)
Query: 263 NILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLC---KVQEFEFGVW--LM 317
N + LC ++ +A+++ + V D Y L LC + E V +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRAL 113
Query: 318 NEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKE 377
+ LG+ A +S V R G++ A+ + K+ +LF +N L+ K
Sbjct: 114 SSHPSLGVRLGNAMLSMFV----RFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKA 165
Query: 378 RKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADE--------G 429
F+EA L++ M G+ P+V T+ ++ + C G D+A E G
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRT-CG-GIPDLA------RGREVHAHVVRFG 217
Query: 430 IKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAF 489
+ + N+LI+ + K G++ +A F+ M I++ ++ISGY + +
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGL 273
Query: 490 RLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGY 549
L+ M + P+ T T++IS E+L + + GY
Sbjct: 274 ELFFTMRELSVDPDLMTITSVISAC--------------ELL------GDERLGREMHGY 313
Query: 550 CREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNE 609
+VK G D SLI S G EA++ + + +
Sbjct: 314 -----VVK----------TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DA 354
Query: 610 MCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDG--SLKQSDTRRYFGL- 666
+ ++A++ GY K G AL M + V+ D + + ++ L D G+
Sbjct: 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV----GVK 410
Query: 667 LKEMHD-KGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVP--NVVTYTALING 723
L E+ + KGL V+ ++I+ K + +A ++ +P +V+++T++I G
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH------NIPEKDVISWTSIIAG 464
Query: 724 LCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAML------D 777
L +A + ++ML + PN +T L R G + ++H +L D
Sbjct: 465 LRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523
Query: 778 GLLANT-------------------------VTYNILIHGFCTMGKFEEATKLLGGMMDN 812
G L N V++NIL+ G+ GK A +L M+++
Sbjct: 524 GFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583
Query: 813 GILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNK-GLKPDPLAYNFLIYGCCIR----- 866
G+ PD +T+ +++ + G + + L+ + SM K + P N Y C +
Sbjct: 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-----NLKHYACVVDLLGRA 638
Query: 867 GEITKAFELRDDM 879
G++T+A+ + M
Sbjct: 639 GKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-22
Identities = 90/382 (23%), Positives = 165/382 (43%), Gaps = 14/382 (3%)
Query: 515 CRANK-LTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVAD 573
C+ + + EA ++ + P T+N+L+ + A +L + GL AD
Sbjct: 416 CKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD 471
Query: 574 TYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACR 633
Y +LI+ +G+V E + + N + AL+ G + G++ A GA
Sbjct: 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
Query: 634 EMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEM--HDKGLRPDNVIYTSMIDAKGK 691
M + V D V ++ LI + R F +L EM + PD++ +++ A
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 692 AGNLKEAFRLWDIMIGEGCV---PNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPN 748
AG + A ++ MI E + P V YT +N + G D A + +M G P+
Sbjct: 592 AGQVDRAKEVYQ-MIHEYNIKGTPEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 749 QITYGCFLDYLTREGKMEKAVQ-LHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLG 807
++ + +D G ++KA + L +A G+ TV+Y+ L+ +++A +L
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708
Query: 808 GMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRG 867
+ + P T + +I C+ L +AL++ M GL P+ + Y+ L+ +
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768
Query: 868 EITKAFELRDDMMRRGIFPSLV 889
+ +L GI P+LV
Sbjct: 769 DADVGLDLLSQAKEDGIKPNLV 790
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-22
Identities = 87/394 (22%), Positives = 160/394 (40%), Gaps = 61/394 (15%)
Query: 542 YNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGR-VSEAKEFVDGL 600
YN L+ R+G + +LL++M +GL+ Y + C R V EA F
Sbjct: 377 YNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF---- 428
Query: 601 HREHCKL---NEMCYSALLHGYCKEGRLKDALGACREMV---ERGVNMDLVCYSVLIDGS 654
KL + +L C +D GA R + E G+ D Y+ LI
Sbjct: 429 ----AKLIRNPTLSTFNMLMSVCASS--QDIDGALRVLRLVQEAGLKADCKLYTTLISTC 482
Query: 655 LKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNV 714
K F + EM + G+ + + ++ID +AG + +AF + IM + P+
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542
Query: 715 VTYTALINGLCKAGYMDKAELLCKEMLASGS--LPNQITYGCFLDYLTREGKMEKAVQLH 772
V + ALI+ ++G +D+A + EM A P+ IT G + G++++A +++
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 773 NAMLD-GLLANTVTYNILIHGFCTM----------------------------------- 796
+ + + Y I ++ C+
Sbjct: 603 QMIHEYNIKGTPEVYTIAVN-SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661
Query: 797 -GKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLA 855
G ++A ++L GI ++YS+++ +AL+L++ + + L+P
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721
Query: 856 YNFLIYGCCIRGEITKAFELRDDMMRRGIFPSLV 889
N LI C ++ KA E+ +M R G+ P+ +
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 2e-20
Identities = 119/517 (23%), Positives = 209/517 (40%), Gaps = 79/517 (15%)
Query: 180 MREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDV-VNVGILPDIYIHSAVMRSLCELK 238
+ + + +L + LV + L+LFE + + A++ + LK
Sbjct: 78 LDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALK 137
Query: 239 DFVKAKEMIHFMDSNGSDLNVVVYN--ILIHGLC----KSQRVFEAVEVKNGFVKRGVKA 292
K + ++S+G + + + N +L+H C ++R+F+ + +N
Sbjct: 138 SIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA------- 190
Query: 293 DVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAF--- 349
++ T++ GL + L EM E G S+A + V R + A
Sbjct: 191 ---SWGTIIGGLVDAGNYREAFALFREMWEDG---SDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 350 NLVNKLGPLGVVPNLFVYNALINSLCK-------ERKFN--------------------- 381
L + GVV + FV ALI+ K F+
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 382 ---EAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYN 438
EA L+ EM+ G+S + T+SI+I R ++ A + G I
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 439 SLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGK 498
+L+ + K G + A + F+ M K L I++ +LI+GY N + KA ++ M +
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 499 GIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERN--VMPNEVTYNVLIEGYCREGCMV 556
G+APN TF A++S CR + L+E + + N + P + Y +IE REG +
Sbjct: 421 GVAPNHVTFLAVLSA-CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479
Query: 557 KAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSE-------AKEFVDGLHREHCKLNE 609
+A+ ++ K V ++ L +A R+ + A E + G+ E KLN
Sbjct: 480 EAYAMIRRAPFKPTV-------NMWAALLTACRIHKNLELGRLAAEKLYGMGPE--KLNN 530
Query: 610 MCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVC 646
Y LL+ Y GR +A + +G++M C
Sbjct: 531 --YVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPAC 565
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 1e-19
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 362 PNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCR 411
P++ YN LI+ CK+ K EA LFNEMK++G+ PNV TYSILID LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 78.2 bits (194), Expect = 4e-18
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 467 PTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCR 516
P V+TY +LI GYC + K+ +A +L++EM +GI PN YT++ LI GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 77.4 bits (192), Expect = 8e-18
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 502 PNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCR 551
P+ T+ LI G C+ K+ EA+K F+EM +R + PN TY++LI+G C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 3e-16
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 537 PNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLC 585
P+ VTYN LI+GYC++G + +A +L +EM +G+ + YTY LI GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 3e-16
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 677 PDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCK 726
PD V Y ++ID K G ++EA +L++ M G PNV TY+ LI+GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 5e-16
Identities = 83/395 (21%), Positives = 150/395 (37%), Gaps = 55/395 (13%)
Query: 471 TYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEM 530
TY +L+ + +Y + G P+ Y ++ + L +A + FDEM
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 531 LERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRV 590
ERN ++ +I G G +AF L EM G A+ T+ ++ G
Sbjct: 185 PERN----LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 591 SEAKEFVDGLHREHCKL----NEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVC 646
++ LH K + AL+ Y K G ++DA M E+ V
Sbjct: 241 RAGQQ----LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VA 292
Query: 647 YSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMI 706
++ ++ G + L EM D G+ D ++ MI + L+ A + +I
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 707 GEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKME 766
G ++V TAL++ K G M+ A + M P +
Sbjct: 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------PRK----------------- 389
Query: 767 KAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIY 826
N +++N LI G+ G+ +A ++ M+ G+ P+ +T+ ++
Sbjct: 390 ---------------NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434
Query: 827 QYCKRGYLHEALKLWDSML-NKGLKPDPLAYNFLI 860
G + +++ SM N +KP + Y +I
Sbjct: 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 5e-15
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 437 YNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCN 481
YN+LI G+CK G + A F EM +G+ P V TY+ LI G C
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 3e-14
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 782 NTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCK 830
+ VTYN LI G+C GK EEA KL M GI P+ TYS +I CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 5e-13
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 397 PNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCK 446
P+VVTY+ LID C++G+++ A+ +M GIK +Y Y+ LI G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 6e-13
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 816 PDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCC 864
PD +TY+T+I YCK+G + EALKL++ M +G+KP+ Y+ LI G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-12
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 5/205 (2%)
Query: 176 VFRLMREKHL--MPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRS 233
V++++ E ++ PEV T+ +N + + L +++D+ G+ PD SA++
Sbjct: 601 VYQMIHEYNIKGTPEVYTI--AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658
Query: 234 LCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKAD 293
D KA E++ G L V Y+ L+ ++ +A+E+ ++
Sbjct: 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718
Query: 294 VVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVN 353
V T L+ LC+ + + +++EM LGL P+ S L+ RK D +L++
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778
Query: 354 KLGPLGVVPNLFVYNALINSLCKER 378
+ G+ PNL + + LC R
Sbjct: 779 QAKEDGIKPNLVMCRCIT-GLCLRR 802
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 2e-12
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 258 NVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCK 306
+VV YN LI G CK +V EA+++ N KRG+K +V TY L+ GLCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 8e-12
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 34/83 (40%)
Query: 712 PNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQL 771
P+VVTY LI+G CK G +++A L EM G P
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP------------------------ 36
Query: 772 HNAMLDGLLANTVTYNILIHGFC 794
N TY+ILI G C
Sbjct: 37 ----------NVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 1e-11
Identities = 66/279 (23%), Positives = 112/279 (40%), Gaps = 23/279 (8%)
Query: 613 SALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLID----GSLKQSDTRRYFGLLK 668
++ L C G+L+ AL M E V +D Y L + +R L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 669 EMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAG 728
G+R N + + + + G L A+ ++ M E ++ ++ L+ G KAG
Sbjct: 115 SHPSLGVRLGNAMLSMFV----RFGELVHAWYVFGKM-PE---RDLFSWNVLVGGYAKAG 166
Query: 729 YMDKAELLCKEMLASGSLPNQITYGCFLDYLTREG----KMEKAVQLHNAMLDGLLANTV 784
Y D+A L ML +G P+ T+ C L T G + V H + G +
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLR--TCGGIPDLARGREVHAH-VVRFGFELDVD 223
Query: 785 TYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSM 844
N LI + G A + M DCI+++ +I Y + G E L+L+ +M
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTM 279
Query: 845 LNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRG 883
+ PD + +I C + G+ E+ +++ G
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 57.7 bits (141), Expect = 4e-11
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 709 GCVPNVVTYTALINGLCKAGYMDKAELLCKEM 740
G P+VVTY LI+GLC+AG +D+A L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 1e-10
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 533 RNVMPNEVTYNVLIEGYCREGCMVKAFELLDEM 565
+ + P+ VTYN LI+G CR G + +A ELLDEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.8 bits (136), Expect = 3e-10
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 393 KGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKM 425
KGL P+VVTY+ LID LCR G +D AV L +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 4e-10
Identities = 73/313 (23%), Positives = 122/313 (38%), Gaps = 20/313 (6%)
Query: 579 SLITGLCSAGRVSEAKEFVDGLH-REHCKLNEMCYSALLHGYCKEGRLKDALGACR---E 634
S I L + GR EA E + L L Y AL+ LK
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI---ALKSIRCVKAVYWH 148
Query: 635 MVERGVNMDLVCYSVLIDGSLK---QSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGK 691
+ G D + ++ +K D RR F EM ++ L I ++DA
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF---DEMPERNLASWGTIIGGLVDA--- 202
Query: 692 AGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQIT 751
GN +EAF L+ M +G T+ ++ G + L +L +G + +
Sbjct: 203 -GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261
Query: 752 YGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811
+D ++ G +E A + + M + TV +N ++ G+ G EEA L M D
Sbjct: 262 SCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318
Query: 812 NGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITK 871
+G+ D T+S +I + + L A + ++ G D +A L+ G +
Sbjct: 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378
Query: 872 AFELRDDMMRRGI 884
A + D M R+ +
Sbjct: 379 ARNVFDRMPRKNL 391
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 2e-09
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 608 NEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDG 653
+ + Y+ L+ GYCK+G++++AL EM +RG+ ++ YS+LIDG
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 5e-09
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 498 KGIAPNSYTFTALISGLCRANKLTEAIKWFDEM 530
KG+ P+ T+ LI GLCRA ++ EA++ DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 82/406 (20%), Positives = 153/406 (37%), Gaps = 56/406 (13%)
Query: 501 APNSYTFT-ALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCR------EG 553
+ +S + + + LC +L +A+K + M E V +E Y L C EG
Sbjct: 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEG 105
Query: 554 CMVKAFELLDEMA------GKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKL 607
V + L G +++ + L+ G++ E F
Sbjct: 106 SRVCSR-ALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLF----------- 153
Query: 608 NEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLL 667
++ L+ GY K G +AL M+ GV D+ + ++ D R
Sbjct: 154 ---SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG---- 206
Query: 668 KEMHDKGLR----PDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALI-- 721
+E+H +R D + ++I K G++ A ++D M + +++ A+I
Sbjct: 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISG 262
Query: 722 ---NGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHN-AMLD 777
NG C G EL M P+ +T + G ++H +
Sbjct: 263 YFENGECLEGL----ELFFT-MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317
Query: 778 GLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEA 837
G + N LI + ++G + EA K+ M D ++++ +I Y K G +A
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKA 373
Query: 838 LKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRG 883
L+ + M + PD + ++ C G++ +L + R+G
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 4e-08
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 222 PDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCK 271
PD+ ++ ++ C+ +A ++ + M G NV Y+ILI GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 4e-08
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 777 DGLLANTVTYNILIHGFCTMGKFEEATKLLGGM 809
GL + VTYN LI G C G+ +EA +LL M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 4e-08
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 463 KGLTPTVITYTSLISGYCNEVKLNKAFRLYHEM 495
KGL P V+TY +LI G C ++++A L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 7e-08
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 359 GVVPNLFVYNALINSLCKERKFNEAEFLFNEMK 391
G+ P++ YN LI+ LC+ + +EA L +EM+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 3e-07
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 365 FVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNV 399
YN LI+ LCK + EA LF EMK++G+ P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 812 NGILPDCITYSTIIYQYCKRGYLHEALKLWDSM 844
G+ PD +TY+T+I C+ G + EA++L D M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 9e-07
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 540 VTYNVLIEGYCREGCMVKAFELLDEMAGKGL 570
VTYN LI GYC+ G + +A EL EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 334 SLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCK 376
+L++G+ +KGK+++A L N++ G+ PN++ Y+ LI+ LCK
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 784 VTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC 818
VTYN LI G C G+ EEA +L M + GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 643 DLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDA 688
D+V Y+ LIDG K+ L EM +G++P+ Y+ +ID
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 2e-06
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 568 KGLVADTYTYRSLITGLCSAGRVSEAKEFVD 598
KGL D TY +LI GLC AGRV EA E +D
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 819 ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD 852
+TY+T+I CK G + EAL+L+ M +G++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 540 VTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADT 574
VTYN LI+G C+ G + +A EL EM +G+ D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 36/162 (22%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Query: 713 NVVTYTALINGLCKAGYMDKAELLCKEMLASGSLP-NQITYGCFLDYLTREGKMEKAVQL 771
Y N L + G + L ++M G L ++I + F ++ +++A +
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF 428
Query: 772 HNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKR 831
+ + L+ T+N+L+ + + A ++L + + G+ DC Y+T+I K
Sbjct: 429 AKLIRNPTLS---TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS 485
Query: 832 GYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAF 873
G + +++ M+N G++ + + LI GC G++ KAF
Sbjct: 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-06
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 505 YTFTALISGLCRANKLTEAIKWFDEMLERNVMPNE 539
T+ LI GLC+A ++ EA++ F EM ER + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 851 PDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFPSLV 889
PD + YN LI G C +G++ +A +L ++M +RGI P++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVY 39
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 429 GIKATIYPYNSLISGHCKLGNLSAAESFFEEM 460
G+K + YN+LI G C+ G + A +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 5e-06
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 605 CKLNEMCYSALLHGYCKEGRLKDALGACREMV 636
K + + Y+ L+ G C+ GR+ +A+ EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 5e-06
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 253 NGSDLNVVVYNILIHGLCKSQRVFEAVEV 281
G +VV YN LI GLC++ RV EAVE+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVEL 29
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 715 VTYTALINGLCKAGYMDKAELLCKEMLASGSLPN 748
VTY LI+GLCKAG +++A L KEM G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 437 YNSLISGHCKLGNLSAAESFFEEMIHKGLTPTV 469
YN+LI G CK G + A F+EM +G+ P V
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 715 VTYTALINGLCKAGYMDKAELLCKEMLASG 744
VTY +LI+G CKAG +++A L KEM G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 365 FVYNALINSLCKERKFNEAEFLFNEMKQKGL 395
YN+LI+ CK K EA LF EMK+KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 9e-06
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 505 YTFTALISGLCRANKLTEAIKWFDEMLERNV 535
T+ +LISG C+A KL EA++ F EM E+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 673 KGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIM 705
KGL+PD V Y ++ID +AG + EA L D M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 437 YNSLISGHCKLGNLSAAESFFEEMIHKGL 465
YNSLISG+CK G L A F+EM KG+
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 784 VTYNILIHGFCTMGKFEEATKLLGGMMDNGI 814
VTYN LI G+C GK EEA +L M + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 610 MCYSALLHGYCKEGRLKDALGACREMVERGVNMD 643
+ Y+ L+ G CK GR+++AL +EM ERG+ D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 470 ITYTSLISGYCNEVKLNKAFRLYHEMTGKGI 500
+TY SLISGYC KL +A L+ EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 680 VIYTSMIDAKGKAGNLKEAFRLWDIMIGEGC 710
V Y S+I KAG L+EA L+ M +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 855 AYNFLIYGCCIRGEITKAFELRDDMMRRGIFPS 887
YN LI G C G + +A EL +M RGI P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 819 ITYSTIIYQYCKRGYLHEALKLWDSMLNKGL 849
+TY+++I YCK G L EAL+L+ M KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 680 VIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNV 714
V Y ++ID KAG ++EA L+ M G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 470 ITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNS 504
+TY +LI G C ++ +A L+ EM +GI P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 364 LFVYNALINSLCKERKFNEAEFLFNEMKQKGLSP 397
L YNAL+ +L K + A + EMK GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 820 TYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP 851
TY+ ++ K G AL + + M GLKP
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 612 YSALLHGYCKEGRLKDALGACREMVERGV 640
Y++L+ GYCK G+L++AL +EM E+GV
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 400 VTYSILIDSLCRRGEMDIAVSFLGKMADEGI 430
VTY+ LI C+ G+++ A+ +M ++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 5e-04
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 437 YNSLISGHCKLGNLSAAESFFEEMIHKGLTP 467
YN+L+ K G+ A + EEM GL P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 6e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 260 VVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADV 294
V YN LI GLCK+ RV EA+E+ +RG++ DV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 7e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 847 KGLKPDPLAYNFLIYGCCIRGEITKAFELRDDM 879
KGLKPD + YN LI G C G + +A EL D+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 8e-04
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 400 VTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATI 434
VTY+ LID LC+ G ++ A+ +M + GI+ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 8e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 714 VVTYTALINGLCKAGYMDKAELLCKEMLASGSLP 747
+ TY AL+ L KAG D A + +EM ASG P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 9e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 288 RGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEM 320
+G+K DVVTY TL+ GLC+ + V L++EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 575 YTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNE 609
TY +LI GLC AGRV EA E + + +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|221737 pfam12726, SEN1_N, SEN1 N terminal | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 30/183 (16%)
Query: 44 EKIIRGKQSWKLALDDAVLSTALKPHHVEKVLIQTLDDSRLALRFFNFLGLHKTFNHSTA 103
+ ++ L+L ++LS+ L + +EK + D+ FN K T
Sbjct: 442 KSLLDALLPSNLSLAKSLLSSLLPLNGLEKFPPKGKDELTAEKTQFN-----KIVQQLTE 496
Query: 104 SFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSL-----GFD 158
++ L + F P S L +L LS +A +++ C FS +
Sbjct: 497 LISQILERL---SDFDP--SELSSL----LSDPDAARAIWSCL----FSPDQDIYQAATN 543
Query: 159 LLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKL---FEDV 215
LL + + + R + + + E + + ++ L L K++ F +L D+
Sbjct: 544 LLKEVFDVDGR-LEA---IQALLESNFSTTLNAINDSLRQLTKLKTFEPAPRLIRVLMDI 599
Query: 216 VNV 218
+N
Sbjct: 600 INA 602
|
This domain is found at the N terminal of the helicase SEN1. SEN1 is a Pol II termination factor for noncoding RNA genes. The N terminal of SEN1, unlike the C terminal, is not required for growth. Length = 724 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.004
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 195 VLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLC 235
+++G K + LKLF ++ GI P++Y +S ++ LC
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 890 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.83 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.73 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.72 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.7 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.7 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.67 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.53 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.52 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.52 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.47 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.47 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.41 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.4 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.39 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.37 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.35 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.33 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.33 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.32 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.31 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.19 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.19 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.16 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.08 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.08 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.03 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.01 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.97 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.96 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.92 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.9 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.83 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.81 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.79 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.78 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.72 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.71 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.71 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.69 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.67 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.62 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.58 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.57 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.5 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.47 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.44 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.43 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.41 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.38 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.37 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.37 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.16 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.15 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.11 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.1 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.05 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.95 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.95 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.94 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.94 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.93 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.91 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.9 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.89 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.87 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.84 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.82 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.82 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.77 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.77 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.75 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.74 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.72 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.7 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.69 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.69 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.68 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.65 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.63 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.62 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.61 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.61 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.61 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.59 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.59 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.57 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.56 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.56 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.55 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.54 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.51 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.5 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.49 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.46 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.46 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.44 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.44 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.42 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.4 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.4 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.39 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.39 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.38 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.36 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.3 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.25 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.21 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.21 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.18 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.18 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.16 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.02 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.01 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.98 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.98 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.94 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.93 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.91 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.91 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.84 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.84 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.83 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.83 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.83 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.83 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.81 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.81 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.72 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.71 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.7 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.66 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.64 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.62 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.62 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.61 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.56 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.55 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.46 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.41 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.4 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.4 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.36 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.36 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.27 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.23 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.23 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.21 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.2 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.2 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.17 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.1 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.89 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.86 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.83 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.82 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.8 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.74 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.57 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.56 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.5 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.5 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.45 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.31 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.23 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.09 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.03 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.66 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.62 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.6 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.59 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.54 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.48 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.41 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.38 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.14 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.12 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.03 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.9 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.89 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.81 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.78 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.68 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.63 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.52 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.4 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.37 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.23 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.1 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.09 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.87 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.76 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.68 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.51 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.37 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.01 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.63 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.61 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.59 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.52 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.46 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.17 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.05 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.92 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.79 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.69 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.45 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.24 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.23 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.21 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.97 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.57 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.35 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.09 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.94 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 88.62 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.33 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.23 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.91 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.83 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.75 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.53 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 87.53 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.36 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.22 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.18 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.37 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.37 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 86.26 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.25 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 85.8 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.53 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 85.37 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 85.15 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 85.05 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 85.04 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.0 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.84 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 84.55 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 84.47 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.2 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.17 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.14 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.8 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.55 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.09 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.99 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 82.8 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 82.79 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.65 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.0 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.52 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 81.35 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.19 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 80.28 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.14 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 80.02 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-84 Score=766.61 Aligned_cols=674 Identities=18% Similarity=0.261 Sum_probs=584.6
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002701 152 SSSLGFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVM 231 (890)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 231 (890)
++...++.++.+|++.|++++|+.+|+.|...|+.|+..+|..++.++.+.+.++.|..++..+.+.+..++..+++.++
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChH
Q 002701 232 RSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFE 311 (890)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 311 (890)
.+|++.|+++.|.++|++|. .||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.++++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999999997 57999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 002701 312 FGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMK 391 (890)
Q Consensus 312 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 391 (890)
.+.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|++|.. ||.++||++|.+|++.|++++|+++|++|.
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999998988899999999999999999999888874 788888888888888888888888888888
Q ss_pred HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH
Q 002701 392 QKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVIT 471 (890)
Q Consensus 392 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 471 (890)
+.|+.||..||+.++.++++.|+.+.|.+++..+.+.|+.||..+||.++.+|++.|++++|.++|++|. .||..+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s 356 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVS 356 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeee
Confidence 8888888888888888888888888888888888888888888888888888888888888888888775 457777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHH
Q 002701 472 YTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCR 551 (890)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 551 (890)
|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+++|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 002701 552 EGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGA 631 (890)
Q Consensus 552 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 631 (890)
.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+
T Consensus 437 ~g~~~~A~~vf~~m~~---------------------------------------~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 437 CKCIDKALEVFHNIPE---------------------------------------KDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred cCCHHHHHHHHHhCCC---------------------------------------CCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777766643 2444555555666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 002701 632 CREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCV 711 (890)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 711 (890)
|++|.. +..||..+|+.++.+|++.|+.+.+.+++..+.+.|+.+|..+++.++++|+++|++++|.++|+.+ .
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~ 551 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----E 551 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----C
Confidence 666654 3667777777777777777777777777777777777888888888888888999999999999887 5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-c-CCCCCHHHHHHH
Q 002701 712 PNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAML-D-GLLANTVTYNIL 789 (890)
Q Consensus 712 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~l 789 (890)
||..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. + +..|+..+|+++
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999 4 899999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 002701 790 IHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGE 868 (890)
Q Consensus 790 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 868 (890)
+++|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+.|....+++.+ +.| +...|..|...|...|+
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCC
Confidence 999999999999999999984 789999999999999999999999999999998 888 56677777889999999
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q 002701 869 ITKAFELRDDMMRRGIFPS 887 (890)
Q Consensus 869 ~~~A~~~~~~m~~~g~~p~ 887 (890)
|++|.++.+.|.++|+.++
T Consensus 707 ~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 707 WDEVARVRKTMRENGLTVD 725 (857)
T ss_pred hHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999876
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-81 Score=743.74 Aligned_cols=713 Identities=17% Similarity=0.227 Sum_probs=665.5
Q ss_pred CccHhHHHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHH
Q 002701 99 NHSTASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFR 178 (890)
Q Consensus 99 ~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 178 (890)
.++..+++.++..|++.|.+.+|..+++.+...+.. ++..+|..++.++.+.+.++.|..++.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~-----------------~~~~~~~~ll~~~~~~~~~~~a~~~~~ 110 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVP-----------------VDEDAYVALFRLCEWKRAVEEGSRVCS 110 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-----------------CChhHHHHHHHHHhhCCCHHHHHHHHH
Confidence 357788999999999999999999999998876532 234567778899999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCC
Q 002701 179 LMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLN 258 (890)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 258 (890)
.+...+..++...+|.++..|.+.|+++.|+.+|++|. .||..+|+.++.+|++.|++++|.++|++|...|+.||
T Consensus 111 ~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd 186 (857)
T PLN03077 111 RALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186 (857)
T ss_pred HHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999996 58899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002701 259 VVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEG 338 (890)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (890)
.+||+.+++++++.+++..+.+++..|.+.|+.||..+|+.|+.+|++.|++++|..+|++|. .+|..+|+.++.+
T Consensus 187 ~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~ 262 (857)
T PLN03077 187 VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISG 262 (857)
T ss_pred hhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999996 4688999999999
Q ss_pred HHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 002701 339 FRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIA 418 (890)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 418 (890)
|++.|+.++|+++|++|.+.|+.||..+|+.++.++++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|
T Consensus 263 ~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 342 (857)
T PLN03077 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 002701 419 VSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGK 498 (890)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 498 (890)
.++|++|. .||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.
T Consensus 343 ~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 343 EKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999986 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 002701 499 GIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYR 578 (890)
Q Consensus 499 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 578 (890)
|+.|+..+|++|+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+++|++|.. ++.||..||+
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~ 493 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLI 493 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHH
Confidence 9999999999999999999999999999999965 5788999999999999999999999999986 5999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 002701 579 SLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQS 658 (890)
Q Consensus 579 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 658 (890)
.++.+|++.|+++.+.+++..+.+.|..++..++++|+++|++.|++++|..+|+.+ .+|.++|+++|.+|++.|
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G 568 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHG 568 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999987 579999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 002701 659 DTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMI-GEGCVPNVVTYTALINGLCKAGYMDKAELLC 737 (890)
Q Consensus 659 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 737 (890)
+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++
T Consensus 569 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~ 648 (857)
T PLN03077 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 6799999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002701 738 KEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD 817 (890)
Q Consensus 738 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 817 (890)
++| .+.||..+|++|+.+|...|+.+.|....+++.+..|.+...|..|.+.|+..|+|++|.++.+.|.+.|+.++
T Consensus 649 ~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 649 NKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred HHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 999 57899999999999999999999999999999998888999999999999999999999999999999999876
Q ss_pred H-HHHHH---HHHHHHhcC----C----HHHHHHHHHHHHhCCCCCCH
Q 002701 818 C-ITYST---IIYQYCKRG----Y----LHEALKLWDSMLNKGLKPDP 853 (890)
Q Consensus 818 ~-~~~~~---l~~~~~~~g----~----~~~A~~~~~~~~~~g~~p~~ 853 (890)
. ..|.. .+..+.... + +..-..+..+|.+.|+.||.
T Consensus 726 ~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 726 PGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred CCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 6 22211 111111100 1 22334566677788988874
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-69 Score=618.62 Aligned_cols=548 Identities=19% Similarity=0.270 Sum_probs=488.0
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChhhHH
Q 002701 185 LMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGI-LPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYN 263 (890)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 263 (890)
..++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|++.|.+++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 345677788888899999999999999999998885 57788888899999999999999999998874 8999999
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 002701 264 ILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKG 343 (890)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 343 (890)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 002701 344 KIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQ--KGLSPNVVTYSILIDSLCRRGEMDIAVSF 421 (890)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 421 (890)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 67889999999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 002701 422 LGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIA 501 (890)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 501 (890)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 002701 502 PNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLI 581 (890)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 581 (890)
|+..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 002701 582 TGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTR 661 (890)
Q Consensus 582 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 661 (890)
.+|++.|++++|.+++.+|.+.|+.||..+|+.++..+. +++++|..+.+.+..-.. .......+..+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHH
Confidence 999999999999999999999999999999999986543 245666555443332110 00111122345
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 002701 662 RYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEML 741 (890)
Q Consensus 662 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 741 (890)
.|+.+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 799999999999999999999999988888899999999999988888889999999999988432 468999999999
Q ss_pred HCCCCCCHH
Q 002701 742 ASGSLPNQI 750 (890)
Q Consensus 742 ~~~~~p~~~ 750 (890)
+.|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=615.50 Aligned_cols=544 Identities=21% Similarity=0.292 Sum_probs=286.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHH
Q 002701 328 SEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGV-VPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILI 406 (890)
Q Consensus 328 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 406 (890)
+...+..+...+++.|++++|.++|++|...|+ +++...++.++.+|.+.|.+++|..+|+.|.. ||..+|+.++
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 333444444444444555555555555544442 23444444444555555555555555544432 4555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 002701 407 DSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLN 486 (890)
Q Consensus 407 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 486 (890)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 002701 487 KAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLE--RNVMPNEVTYNVLIEGYCREGCMVKAFELLDE 564 (890)
Q Consensus 487 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 564 (890)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555543 34445555555555555555555555555555
Q ss_pred HhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 002701 565 MAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDL 644 (890)
Q Consensus 565 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 644 (890)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002701 645 VCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGL 724 (890)
Q Consensus 645 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 724 (890)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002701 725 CKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATK 804 (890)
Q Consensus 725 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 804 (890)
++.|++++|.+++++|.+.|+.||..+|+.++..|. +.+++|..+.+.+.. |+ .+......+..++|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~--------f~-~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS--------FD-SGRPQIENKWTSWALM 833 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh--------hh-ccccccccchHHHHHH
Confidence 555555555555555555555555555555554332 134444433332222 00 0001111223345666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002701 805 LLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGI 884 (890)
Q Consensus 805 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 884 (890)
+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|..+++++.+. .++|..++++|.+.|+
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 66777666666676666666666666666666666666666556666666666666665322 2467777777777776
Q ss_pred CCCC
Q 002701 885 FPSL 888 (890)
Q Consensus 885 ~p~~ 888 (890)
.|+.
T Consensus 912 ~p~~ 915 (1060)
T PLN03218 912 VPSV 915 (1060)
T ss_pred CCCc
Confidence 6664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-62 Score=563.53 Aligned_cols=474 Identities=20% Similarity=0.312 Sum_probs=454.3
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002701 153 SSLGFDLLIQSYVQNKRVADGVFVFRLMREKH-LMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVM 231 (890)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 231 (890)
+...|+.++..|.+.|++++|+++|+.|...+ +.|+..+|+.++.++.+.++++.|.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34578889999999999999999999998754 67999999999999999999999999999999999999999999999
Q ss_pred HHHHccCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChH
Q 002701 232 RSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFE 311 (890)
Q Consensus 232 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 311 (890)
++|++.|++++|.++|++|. .||.++||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|+.+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999997 47999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 002701 312 FGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMK 391 (890)
Q Consensus 312 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 391 (890)
.+.+++..+.+.|..++..+++.|+.+|++.|++++|.++|++|.. +|.++||++|.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999974 799999999999999999999999999999
Q ss_pred HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH
Q 002701 392 QKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVIT 471 (890)
Q Consensus 392 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 471 (890)
+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.||..+|+.|+++|++.|++++|.++|++|. .||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 469999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChHHHHHHHHHHH
Q 002701 472 YTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLE-RNVMPNEVTYNVLIEGYC 550 (890)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~ 550 (890)
||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 599999999999999999
Q ss_pred HcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 002701 551 REGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALG 630 (890)
Q Consensus 551 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (890)
+.|++++|.+++++| ++.|+..+|+.|+.+|+..|+++.|..+++++.+.++ .+..+|..+++.|++.|++++|.+
T Consensus 474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHH
Confidence 999999999999876 5789999999999999999999999999999987643 357799999999999999999999
Q ss_pred HHHHHHHcCCCC
Q 002701 631 ACREMVERGVNM 642 (890)
Q Consensus 631 ~~~~~~~~~~~~ 642 (890)
+++.|.++|+..
T Consensus 550 v~~~m~~~g~~k 561 (697)
T PLN03081 550 VVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcc
Confidence 999999999753
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-61 Score=553.95 Aligned_cols=507 Identities=19% Similarity=0.287 Sum_probs=436.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhccC-CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 002701 332 VSSLVEGFRRKGKIDDAFNLVNKLGPL-GVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLC 410 (890)
Q Consensus 332 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 410 (890)
++.++.+|.+.|++++|+++|+.|... ++.||..+|+.++.++++.++++.|.+++..|.+.|+.||..+|+.++.+|+
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 333344444444444444444444432 2467888888888888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 002701 411 RRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFR 490 (890)
Q Consensus 411 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 490 (890)
+.|++++|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+
T Consensus 170 k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred cCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 88888888888888853 68888999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCC
Q 002701 491 LYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGL 570 (890)
Q Consensus 491 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 570 (890)
++..+.+.|+.||..+|++|+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999998853 5788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002701 571 VADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVL 650 (890)
Q Consensus 571 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 650 (890)
.||..||+.++.+|++.|++++|.+++..+.+.|+.+|..++++|+++|++.|++++|.++|++|.+ ||..+|+.+
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~l 397 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNAL 397 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999864 689999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCC
Q 002701 651 IDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIG-EGCVPNVVTYTALINGLCKAGY 729 (890)
Q Consensus 651 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~ 729 (890)
|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|+
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999986 5999999999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 730 MDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGM 809 (890)
Q Consensus 730 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 809 (890)
+++|.+++++| +..|+..+|+.++.+|...|+++.|..+++++.+..|.+..+|..|+++|++.|++++|.+++++|
T Consensus 478 ~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 478 LDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999887 688999999999999999999999999999998877778899999999999999999999999999
Q ss_pred HHCCCCCCH-HHHHHHH---HHHH--------hcCCHHHHHHHHHHHHhCCCCCCH
Q 002701 810 MDNGILPDC-ITYSTII---YQYC--------KRGYLHEALKLWDSMLNKGLKPDP 853 (890)
Q Consensus 810 ~~~~~~p~~-~~~~~l~---~~~~--------~~g~~~~A~~~~~~~~~~g~~p~~ 853 (890)
.+.|+.+.. .+|..+. ..+. ...-+++...+..+|.+.|+.||.
T Consensus 555 ~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 555 KRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999886432 2331110 0000 011145566778888888999974
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=474.21 Aligned_cols=822 Identities=14% Similarity=0.056 Sum_probs=659.9
Q ss_pred cchhHHHHHHHHHcCCcchhhhhccccccCCCChH------HHHHHHHhcCCChHHHHHHHHHhccCCCCCccHhHHHHH
Q 002701 35 KESQFIDTLEKIIRGKQSWKLALDDAVLSTALKPH------HVEKVLIQTLDDSRLALRFFNFLGLHKTFNHSTASFCIL 108 (890)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~------~v~~~l~~~~~~~~~al~ff~~~~~~~~~~~~~~~~~~l 108 (890)
+.......+..+....+.|..++..........|. .+..++. ..++++.|+..|.-+... ........+..+
T Consensus 54 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~ 131 (899)
T TIGR02917 54 NDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYL-LQGKFQQVLDELPGKTLL-DDEGAAELLALR 131 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHH-HCCCHHHHHHhhcccccC-CchhhHHHHHHH
Confidence 34455555666665566666655533211111111 1112221 356666776666543211 122345666667
Q ss_pred HHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhc----------------CCCchhhHHHHHHHHHhcCChhH
Q 002701 109 IHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKF----------------GFSSSLGFDLLIQSYVQNKRVAD 172 (890)
Q Consensus 109 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~ 172 (890)
+.++...|++++|...+++++...|......-.+...+... .-.+..++..++..+...|++++
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 211 (899)
T TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIEL 211 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHH
Confidence 77777777777777777776665554333221111111111 11245677888889999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHh
Q 002701 173 GVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDS 252 (890)
Q Consensus 173 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 252 (890)
|...|+++....+. +..++..++..+...|++++|...++.+.+.. +.+...+......+...|++++|...|+++.+
T Consensus 212 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 289 (899)
T TIGR02917 212 ALAAYRKAIALRPN-NPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALK 289 (899)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999998876553 66778888888999999999999999998876 44555666667777888999999999999988
Q ss_pred CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH
Q 002701 253 NGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAV 332 (890)
Q Consensus 253 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 332 (890)
.++. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++.+.+.. +.+...+
T Consensus 290 ~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 366 (899)
T TIGR02917 290 SAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAAL 366 (899)
T ss_pred hCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 7422 33445556667888999999999999988763 3455667778888899999999999999998764 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 002701 333 SSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRR 412 (890)
Q Consensus 333 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 412 (890)
..++..|.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.+.. +......++..+.+.
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhc
Confidence 899999999999999999999988754 456677888888999999999999999999886433 345666778889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 002701 413 GEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLY 492 (890)
Q Consensus 413 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 492 (890)
|++++|..+++++.... +.+..++..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...+
T Consensus 445 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998763 447788999999999999999999999999887533 5667888889999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCC
Q 002701 493 HEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVA 572 (890)
Q Consensus 493 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 572 (890)
+++.+.+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..++..+.+.|++++|.++++++.+. .+.
T Consensus 523 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 599 (899)
T TIGR02917 523 EKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APD 599 (899)
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCC
Confidence 9998763 4577888999999999999999999999998875 456778888999999999999999999999875 455
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002701 573 DTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLID 652 (890)
Q Consensus 573 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 652 (890)
+..++..++.++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 78899999999999999999999999998875 3467788899999999999999999999999874 336888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 002701 653 GSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDK 732 (890)
Q Consensus 653 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 732 (890)
.+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+...+ |+..++..++..+.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998875 5577788888999999999999999999999874 555777888999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 733 AELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDN 812 (890)
Q Consensus 733 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 812 (890)
|.+.++++++.. +.+..++..+...|...|++++|...|+++++..|+++.+++.++..+...|+ ++|+.+++++.+.
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999999999763 56788899999999999999999999999999889999999999999999999 8899999999984
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 813 GILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDDMMR 881 (890)
Q Consensus 813 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 881 (890)
.| +..++..++..+...|++++|..+++++++ ..| ++.++..++.+|.+.|++++|.+++++|++
T Consensus 833 --~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 833 --APNIPAILDTLGWLLVEKGEADRALPLLRKAVN--IAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 34 447788899999999999999999999999 555 889999999999999999999999999873
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=462.81 Aligned_cols=815 Identities=14% Similarity=0.069 Sum_probs=642.7
Q ss_pred HHHHcCCcchhhhhccccccCCCChHH------HHHHHHhcCCChHHHHHHHHHhccCCCCCccHhHHHHHHHHHhhCCC
Q 002701 44 EKIIRGKQSWKLALDDAVLSTALKPHH------VEKVLIQTLDDSRLALRFFNFLGLHKTFNHSTASFCILIHGLVQNNL 117 (890)
Q Consensus 44 ~~~l~~~~~~~~~~~~~~~~~~l~~~~------v~~~l~~~~~~~~~al~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 117 (890)
.......+.|..++....-.....|.. ...++. ..++++.|+..|+-+..... ++......++.++...|+
T Consensus 29 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~g~ 105 (899)
T TIGR02917 29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYL-ALGDYAAAEKELRKALSLGY--PKNQVLPLLARAYLLQGK 105 (899)
T ss_pred HHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCC--ChhhhHHHHHHHHHHCCC
Confidence 334444566766655332222233322 222332 47899999999998844322 356677889999999999
Q ss_pred chhHHHHHHHHHHcCC-CchHHHHHH-------------HHHHhh---cCCCchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 002701 118 FWPASSLLQTLLLRGL-SPKEAFDSL-------------FDCYEK---FGFSSSLGFDLLIQSYVQNKRVADGVFVFRLM 180 (890)
Q Consensus 118 ~~~a~~~l~~~~~~~~-~~~~~~~~~-------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 180 (890)
+++|...+........ .....+..+ ...+.. ....+..++..++..+...|++++|..+++++
T Consensus 106 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 106 FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred HHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999876542221 111111111 111111 11124456777778888888888888888887
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChh
Q 002701 181 REKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVV 260 (890)
Q Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 260 (890)
....+ ++..++..+...+...|++++|...|+++...+ +.+..++..++..+...|++++|...++.+.+..+ .+..
T Consensus 186 ~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 262 (899)
T TIGR02917 186 LTADP-GNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAP-NSPL 262 (899)
T ss_pred HHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCch
Confidence 66543 356677777777888888888888888887766 56677777888888888888888888888877642 2333
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002701 261 VYNILIHGLCKSQRVFEAVEVKNGFVKRGVKAD-VVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGF 339 (890)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 339 (890)
.+......+...|++++|...++++.+.+ |+ ...+..+...+...|++++|...++.+.+... .+......++..+
T Consensus 263 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~ 339 (899)
T TIGR02917 263 AHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQ 339 (899)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 44444555667788888888888887754 33 33444555667788888888888888877642 3566777788888
Q ss_pred HhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 002701 340 RRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAV 419 (890)
Q Consensus 340 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 419 (890)
.+.|++++|...++++.... +.+...++.+...+.+.|++++|.+.|+++.+... .+...+..+...+...|++++|.
T Consensus 340 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 340 LRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHH
Confidence 88999999999988887654 45677888888888899999999999988887632 25667777888888899999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 002701 420 SFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKG 499 (890)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 499 (890)
+.++++.+..+. .......++..+.+.|++++|..+++.+.... +++..++..+...+...|++++|...|+++.+..
T Consensus 418 ~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 418 ADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 999888876533 34556667888889999999999999988764 3467788999999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 002701 500 IAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRS 579 (890)
Q Consensus 500 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 579 (890)
+.+...+..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..
T Consensus 496 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 572 (899)
T TIGR02917 496 -PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALA 572 (899)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHH
Confidence 4456777888889999999999999999998875 4577888999999999999999999999998764 346677888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002701 580 LITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSD 659 (890)
Q Consensus 580 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 659 (890)
++..+...|++++|..+++.+.+.. +.+...|..+...|...|++++|...|+.+.+..+ .+...+..+...+...|+
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCC
Confidence 9999999999999999999998765 45788899999999999999999999999988743 367788889999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002701 660 TRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKE 739 (890)
Q Consensus 660 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 739 (890)
+++|...++++.+.. +.+..++..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|...+++
T Consensus 651 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 651 YAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998764 4567888999999999999999999999998875 55777888899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 002701 740 MLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCI 819 (890)
Q Consensus 740 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 819 (890)
+... .|+..++..++.++.+.|++++|...++.+++..|.+..+++.++..|...|++++|.+.|+++.+.. +++..
T Consensus 729 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 805 (899)
T TIGR02917 729 ALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAV 805 (899)
T ss_pred HHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHH
Confidence 9976 45557788889999999999999999999999889999999999999999999999999999999863 45678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002701 820 TYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDDMMRRGI 884 (890)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 884 (890)
++..+++.+...|+ ++|+.+++++++ ..| ++..+..++..+...|++++|.++++++++.+.
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 89999999999999 889999999998 666 667788899999999999999999999998664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-30 Score=308.23 Aligned_cols=671 Identities=12% Similarity=0.039 Sum_probs=350.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 002701 157 FDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCE 236 (890)
Q Consensus 157 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (890)
....++.+...++.+.|.+.+.++....+. +...+..++..+.+.|+.++|...+++..+.. +.+........
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~----- 103 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRT----- 103 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHH-----
Confidence 444556666667777777777777665444 45556666666677777777777777776665 33332211000
Q ss_pred cCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHccCChHHHHH
Q 002701 237 LKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVV-TYCTLVLGLCKVQEFEFGVW 315 (890)
Q Consensus 237 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~A~~ 315 (890)
.+... .|+......+...+.+.|++++|++.++++.+.. +|+.. ............|+.++|+.
T Consensus 104 -------------~~~~~-~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~ 168 (1157)
T PRK11447 104 -------------TMLLS-TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAIN 168 (1157)
T ss_pred -------------HHHhc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHH
Confidence 00000 1111112223334455555555555555555432 12211 10000111112355555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC------------------CCcC-HHHHHHHHHHHHh
Q 002701 316 LMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLG------------------VVPN-LFVYNALINSLCK 376 (890)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------~~~~-~~~~~~li~~~~~ 376 (890)
.++++.+.. +.+......++..+...|+.++|+..++++.... ..++ ...+...+..+-.
T Consensus 169 ~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~ 247 (1157)
T PRK11447 169 QLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSD 247 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCC
Confidence 555555543 2234445555555555556555665555554321 0111 0111111222222
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 002701 377 ERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESF 456 (890)
Q Consensus 377 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 456 (890)
....+.|...+..+......|+... ......+...|++++|+..|++.++..+. +..++..+...+.+.|++++|+..
T Consensus 248 ~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 248 GDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred chHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2223344444444333222222111 12233444455555555555555544221 344455555555555555555555
Q ss_pred HHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002701 457 FEEMIHKGLTPT-VITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNV 535 (890)
Q Consensus 457 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 535 (890)
|++.++...... ...|..++... ...........+.+.|++++|+..|+++++..
T Consensus 326 l~~Al~~~p~~~~~~~~~~ll~~~-----------------------~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~- 381 (1157)
T PRK11447 326 FEKALALDPHSSNRDKWESLLKVN-----------------------RYWLLIQQGDAALKANNLAQAERLYQQARQVD- 381 (1157)
T ss_pred HHHHHHhCCCccchhHHHHHHHhh-----------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 555554422111 01111000000 00000111223444555555555555555442
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC--------C
Q 002701 536 MPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCK--------L 607 (890)
Q Consensus 536 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~ 607 (890)
+.+...+..+...+...|++++|++.|+++.+.. +.+..++..+...+. .++.++|..+++.+...... .
T Consensus 382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2233444445555555555555555555555432 122333334444332 23445555444433221100 0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002701 608 NEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMID 687 (890)
Q Consensus 608 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 687 (890)
....+..+...+...|++++|+..|++.++..+. +...+..+...+.+.|++++|...++++.+.. +.+...+..+..
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al 537 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGL 537 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 1112334455555666666666666666655332 44455555566666666666666666665432 222333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH---------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002701 688 AKGKAGNLKEAFRLWDIMIGEGCVPNV---------VTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDY 758 (890)
Q Consensus 688 ~~~~~g~~~~A~~~~~~~~~~~~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 758 (890)
.+...++.++|...++.+......++. ..+..++..+...|+.++|+.+++. .+++...+..+...
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~ 612 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADW 612 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHH
Confidence 445566666666666654332111111 1123456677888999999988872 24556677778888
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 002701 759 LTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD-CITYSTIIYQYCKRGYLHEA 837 (890)
Q Consensus 759 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 837 (890)
+.+.|++++|+..|+++++..|.+..++..++..|...|++++|++.++++.+. .|+ ..++..++.++...|++++|
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHH
Confidence 899999999999999999988888999999999999999999999999988763 443 46677788888899999999
Q ss_pred HHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCC
Q 002701 838 LKLWDSMLNKGL--KP---DPLAYNFLIYGCCIRGEITKAFELRDDMM-RRGIFPS 887 (890)
Q Consensus 838 ~~~~~~~~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~ 887 (890)
..++++++...- .| +...+..++..+.+.|++++|++.|++++ ..|+.|.
T Consensus 691 ~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 691 QRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 999999887311 11 22456667888899999999999999887 4556543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-29 Score=302.20 Aligned_cols=641 Identities=12% Similarity=0.045 Sum_probs=426.3
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH----------------HHHHHHHHhcCChhHHHHHHHHH
Q 002701 152 SSSLGFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTL----------------SGVLNGLVKIRQFGLVLKLFEDV 215 (890)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~~~~ 215 (890)
.++.++..++..+.+.|+.++|.+.+++..+..+. +..+. ..+...+.+.|++++|...|+++
T Consensus 60 ~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 60 NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 46788899999999999999999999999887654 22221 23344677889999999999999
Q ss_pred HHCCCCCCHH-HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 002701 216 VNVGILPDIY-IHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADV 294 (890)
Q Consensus 216 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 294 (890)
.+.+ +|+.. ............|+.++|+..++++.+.. +.+...+..+...+...|++++|++.++++.+.. +.
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~--~~- 213 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP--AG- 213 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--Cc-
Confidence 8765 44432 11122222234589999999999998874 3355677788888899999999999999987642 11
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHH
Q 002701 295 VTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSE-AAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINS 373 (890)
Q Consensus 295 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 373 (890)
+...+...++.+...+..+.. ..+...+..+-.....+.|...+.+.......|.... ......
T Consensus 214 --------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~ 278 (1157)
T PRK11447 214 --------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLA 278 (1157)
T ss_pred --------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHH
Confidence 112222223333322222221 2233333333344456778888877654433344322 345667
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHH------------HH
Q 002701 374 LCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATI-YPYN------------SL 440 (890)
Q Consensus 374 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~------------~l 440 (890)
+...|++++|+..|++..+... .+...+..+...+.+.|++++|+..|++.++....... ..+. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 7889999999999999998632 26788999999999999999999999999886543211 1121 22
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 002701 441 ISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKL 520 (890)
Q Consensus 441 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 520 (890)
...+.+.|++++|+..|+++++..+. +...+..+...+...|++++|++.|+++++.. +.+...+..+...|. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCH
Confidence 34556777777777777777776432 45566667777777777777777777777652 334455555555553 3566
Q ss_pred HHHHHHHHHHHHCCCC--------CChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHH
Q 002701 521 TEAIKWFDEMLERNVM--------PNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSE 592 (890)
Q Consensus 521 ~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 592 (890)
++|..+++.+...... .....+..+...+...|++++|++.+++.++... .+...+..+...+...|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 7777777654332100 0012233445555566666666666666665422 244555566666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002701 593 AKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHD 672 (890)
Q Consensus 593 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 672 (890)
|...++++.+..+ .+...+..+...+...++.++|+..++.+......++..... ..+
T Consensus 514 A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~-------------------~~l-- 571 (1157)
T PRK11447 514 ADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA-------------------QRL-- 571 (1157)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH-------------------HHH--
Confidence 6666666655432 233444444444555666666666665543321111110000 000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 002701 673 KGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITY 752 (890)
Q Consensus 673 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 752 (890)
....+......+...|+.++|..+++. .+++...+..+...+.+.|++++|+..|++.++.. +.+...+
T Consensus 572 -----~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~ 640 (1157)
T PRK11447 572 -----QSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADAR 640 (1157)
T ss_pred -----hhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 001123445667788999999998872 24566677888999999999999999999999763 4467888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHH
Q 002701 753 GCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGI--LP---DCITYSTIIYQ 827 (890)
Q Consensus 753 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~ 827 (890)
..++..+...|++++|++.++.+.+..|.+..++..++.++...|++++|.++++++..... +| +...+..++..
T Consensus 641 ~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 641 LGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH
Confidence 99999999999999999999998887778888888999999999999999999999987421 12 22466777889
Q ss_pred HHhcCCHHHHHHHHHHHHh-CCCCC
Q 002701 828 YCKRGYLHEALKLWDSMLN-KGLKP 851 (890)
Q Consensus 828 ~~~~g~~~~A~~~~~~~~~-~g~~p 851 (890)
+...|++++|+..|++++. .|+.|
T Consensus 721 ~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 721 EAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999875 44554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-25 Score=258.68 Aligned_cols=664 Identities=12% Similarity=-0.002 Sum_probs=448.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 002701 160 LIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKD 239 (890)
Q Consensus 160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (890)
.+.-+...|++++|+..|+++.+..+. +..++..+...+.+.|++++|....+++++.. +.|...+..+... ++
T Consensus 50 ~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~i----~~ 123 (987)
T PRK09782 50 KALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAAI----PV 123 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHHh----cc
Confidence 344455569999999999999988776 57888999999999999999999999999986 5566666655333 99
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHH--------HHccCChhHHHHHHHHHHHCCCCCCHHhHHHH-HHHHHccCCh
Q 002701 240 FVKAKEMIHFMDSNGSDLNVVVYNILIHG--------LCKSQRVFEAVEVKNGFVKRGVKADVVTYCTL-VLGLCKVQEF 310 (890)
Q Consensus 240 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~ 310 (890)
+++|.++++++.+..+ -+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++
T Consensus 124 ~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 124 EVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred ChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 9999999999999842 244555555554 6555 55555554 3333334445545444 8889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002701 311 EFGVWLMNEMIELGLVPSEAAVSSLVEGFRR-KGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNE 389 (890)
Q Consensus 311 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 389 (890)
++|+.++.++.+.+. .+......|...|.. .++ ++|..+++.. ...+...+..++..|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999999874 456667788888888 477 8888886542 236788899999999999999999999999
Q ss_pred HHHCCCC-cCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 002701 390 MKQKGLS-PNVVTYSILIDSLCRRGEMD-IAVSFLGKMADEGIKATI-YPYNSLISGHCKLGNLSAAESFFEEMIHKGLT 466 (890)
Q Consensus 390 m~~~g~~-p~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (890)
+...-.. |+..++.-+ +.+.+... .|..-|.+ + ..++. ...-.++..+.+.++++.+.++.. +.
T Consensus 273 ~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 339 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TL 339 (987)
T ss_pred CcccccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CC
Confidence 8765322 444444433 34444332 12222221 1 11111 223344778888899987765522 23
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCChHHHHH
Q 002701 467 PTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLER-N-VMPNEVTYNV 544 (890)
Q Consensus 467 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~ 544 (890)
|.......-..+....+...++...+..|.+. .+-+......+.....+.|+.++|.++++..... + ..++......
T Consensus 340 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 418 (987)
T PRK09782 340 PANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMAR 418 (987)
T ss_pred CcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHH
Confidence 33332211112223446777888888888765 2335555555555667889999999999988763 1 2233445557
Q ss_pred HHHHHHHcCCh---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHH---HHHHHHHHHHcCCCC--CHHHHHHHH
Q 002701 545 LIEGYCREGCM---VKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSE---AKEFVDGLHREHCKL--NEMCYSALL 616 (890)
Q Consensus 545 li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~ 616 (890)
++..|.+.+.. .++..+-..+.. ..- +.-.|+..+ +...+..+.... +. +...|..+.
T Consensus 419 l~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG 484 (987)
T PRK09782 419 LASLLESHPYLATPAKVAILSKPLPL-------AEQ------RQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLA 484 (987)
T ss_pred HHHHHHhCCcccchHHHHHhcccccc-------chh------HHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHH
Confidence 88888888773 344333222211 111 111223323 233333333322 23 566777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002701 617 HGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLK 696 (890)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 696 (890)
.++.. ++.++|+..+.+..... |+......+...+...|++++|...++++... +|+...+..+...+.+.|+.+
T Consensus 485 ~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~ 559 (987)
T PRK09782 485 KCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGA 559 (987)
T ss_pred HHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHH
Confidence 77766 77888888777777653 44433333344446788888888888887554 344444556666777888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 002701 697 EAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAML 776 (890)
Q Consensus 697 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 776 (890)
+|..+++...+.+ +++...+..+...+...|++++|+..+++.++. .|+...+..+...+.+.|+.++|+..+++++
T Consensus 560 eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 560 ARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888887764 223333333333444558888888888888854 4667778888888888888888888888888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HH
Q 002701 777 DGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD-PL 854 (890)
Q Consensus 777 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~ 854 (890)
+..|.+...++.++..+...|++++|++.++++++ ..| +...+..++.++...|++++|+..++++++ +.|+ ..
T Consensus 637 ~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~ 712 (987)
T PRK09782 637 ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQAL 712 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCch
Confidence 88888888888888888888888888888888887 344 447778888888888888888888888888 7774 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 855 AYNFLIYGCCIRGEITKAFELRDDMM 880 (890)
Q Consensus 855 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 880 (890)
+.....+...+..+++.|.+-+++..
T Consensus 713 i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 713 ITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 66666677777777777777776655
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-25 Score=256.70 Aligned_cols=694 Identities=11% Similarity=-0.036 Sum_probs=490.4
Q ss_pred cHhHHHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 002701 101 STASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLM 180 (890)
Q Consensus 101 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 180 (890)
.+..|+..+..+...|++++|...|++++...|+.. .++..|+..|...|++++|+..+++.
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~------------------~~~~~LA~~yl~~g~~~~A~~~~~kA 104 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNI------------------PLTLYLAEAYRHFGHDDRARLLLEDQ 104 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH------------------HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345566677777777999999999999999888543 45677899999999999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--------HHccCChhhHHHHHHHHHh
Q 002701 181 REKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRS--------LCELKDFVKAKEMIHFMDS 252 (890)
Q Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~ 252 (890)
....+. |...+..+ ..+ +++++|...|+++.... +.+..++..+... |.+. ++|.+.++ ...
T Consensus 105 v~ldP~-n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~ 174 (987)
T PRK09782 105 LKRHPG-DARLERSL-AAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DAT 174 (987)
T ss_pred HhcCcc-cHHHHHHH-HHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhh
Confidence 887542 44444443 222 99999999999999987 6667777777776 6555 55555555 333
Q ss_pred CCCCCChhhHHHH-HHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHH
Q 002701 253 NGSDLNVVVYNIL-IHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCK-VQEFEFGVWLMNEMIELGLVPSEA 330 (890)
Q Consensus 253 ~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~ 330 (890)
..+.|+..+.... ...|.+.|++++|++.+.++.+.+. .+..-...|...|.. .++ +++..+++. ....+..
T Consensus 175 ~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~ 248 (987)
T PRK09782 175 FAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQ 248 (987)
T ss_pred hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHH
Confidence 3334456655555 8899999999999999999999863 334446667677777 466 777777553 3336888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCC-cCHHHHHHHHHHHHhcCChh-HHHHHHHHHHHCCCCcCH-HHHHHHHH
Q 002701 331 AVSSLVEGFRRKGKIDDAFNLVNKLGPLGVV-PNLFVYNALINSLCKERKFN-EAEFLFNEMKQKGLSPNV-VTYSILID 407 (890)
Q Consensus 331 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~-~~~~~li~ 407 (890)
+...++..|.+.|+.++|.++++++...... |...+|--+ +.+.+... .|..-|.+ + ..++. .....++.
T Consensus 249 l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~ 321 (987)
T PRK09782 249 SRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLP 321 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHH
Confidence 9999999999999999999999998765332 555444333 33444332 12222222 1 11121 12233478
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 002701 408 SLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISG--HCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKL 485 (890)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 485 (890)
.+.+.++++.+.++.. +.|.... ..+.. ....+...++...+..|.+.... +......+.-...+.|+.
T Consensus 322 ~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 322 VLLKEGQYDAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHhccHHHHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccH
Confidence 8888999986665532 2333222 22222 22347778888888888776322 444455555556789999
Q ss_pred HHHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHH---HHH
Q 002701 486 NKAFRLYHEMTGK-G-IAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVK---AFE 560 (890)
Q Consensus 486 ~~A~~~~~~m~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~ 560 (890)
++|.++++..... + -.++.....-++..|.+.+......++..-.. +++...- +.-.|+..+ +..
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~------~~~~~~~~~~~~~~~ 462 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK----PLPLAEQ------RQWQSQLPGIADNCP 462 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc----ccccchh------HHHHhhhhhhhhhHH
Confidence 9999999998773 1 22344555688888998887444433322211 1111111 112233333 344
Q ss_pred HHHHHhhCCCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 002701 561 LLDEMAGKGLVA--DTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVER 638 (890)
Q Consensus 561 ~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 638 (890)
.+...... .++ +...+..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++...
T Consensus 463 ~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 463 AIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred HHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 44444432 234 67778888887776 78888999888877764 44444444555667899999999999998665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 002701 639 GVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYT 718 (890)
Q Consensus 639 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 718 (890)
+|+...+..+...+.+.|+.++|...+++..+.. +++...+..+.......|++++|...+++.++. .|+...|.
T Consensus 539 --~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~ 613 (987)
T PRK09782 539 --DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYV 613 (987)
T ss_pred --CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 3444556677778889999999999999998765 333333334444444669999999999999987 46788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 002701 719 ALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGK 798 (890)
Q Consensus 719 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 798 (890)
.+...+.+.|++++|+..+++.++.. +.+...++.+..++...|++++|+..++++++..|.++..+..++.++...|+
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999763 44667788888899999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 002701 799 FEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGE 868 (890)
Q Consensus 799 ~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 868 (890)
+++|+..++++.+ ..|+. .+.....+...+..+++.|.+-+++... +.|+..+.......+...++
T Consensus 693 ~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~a~~~~g~~~~~~~~ 759 (987)
T PRK09782 693 MAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSSIGLRSGAMSTANNN 759 (987)
T ss_pred HHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccchhccccchHhhhccc
Confidence 9999999999998 56765 6666778888888889999999888877 77766554444444444433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-22 Score=215.84 Aligned_cols=647 Identities=14% Similarity=0.091 Sum_probs=462.6
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCCCHhhHHHHHHHHH------------hcCChhHHHHHHHH
Q 002701 153 SSLGFDLLIQSYVQNKRVADGVFVFRLMREK------HLMPEVRTLSGVLNGLV------------KIRQFGLVLKLFED 214 (890)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~ 214 (890)
.-..|......|...|+.++.+.+++..... ++..+.......+.++. +...+..|.-+|+.
T Consensus 40 ~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~ 119 (1018)
T KOG2002|consen 40 PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDL 119 (1018)
T ss_pred chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhH
Confidence 3458888999999999999999999887611 11111111111222222 11234566677777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCC--hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCC--C
Q 002701 215 VVNVGILPDIYIHSAVMRSLCELKD--FVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRG--V 290 (890)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~ 290 (890)
+-+.....++..+.. ...|...|. ++.|...|....+.. ++|+..+-.-....+..|+|..|+.+|....... .
T Consensus 120 A~ki~m~~~~~l~~~-~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 120 ADKIDMYEDSHLLVQ-RGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred HHHhhccCcchhhhh-hhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 755543333322222 222333343 589999999998874 4566666555666778899999999999976543 3
Q ss_pred CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHhccCCCCcCHHHH
Q 002701 291 KADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFR---RKGKIDDAFNLVNKLGPLGVVPNLFVY 367 (890)
Q Consensus 291 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~ 367 (890)
.||+ ...+..++.+.|+.+.|+..|....+.++ .+..++..|...-. ....+..+.+++..+-... +.|+++.
T Consensus 198 ~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l 273 (1018)
T KOG2002|consen 198 KADV--RIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVAL 273 (1018)
T ss_pred CCCc--cchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHH
Confidence 4443 22344566799999999999999998754 33444444433322 2344777888888876654 5678889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 002701 368 NALINSLCKERKFNEAEFLFNEMKQKGLSP--NVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHC 445 (890)
Q Consensus 368 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (890)
+.|.+.|.-.|++..+..+...+......- -..+|-.+..+|...|++++|...|.+..+.....-+..+-.+..+|.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 999999999999999999999888753211 134678899999999999999999999887654433556677889999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 002701 446 KLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEV----KLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLT 521 (890)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 521 (890)
+.|+++.+...|+......+. +..+...|...|...+ ..+.|..++.+..+. .+.|...|..+...+...+-+
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~- 430 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPW- 430 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChH-
Confidence 999999999999999887422 5567777777777664 567788888887766 355778888887777665443
Q ss_pred HHHHHHHHHH----HCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhC---CCCCC------HHHHHHHHHHHHcCC
Q 002701 522 EAIKWFDEML----ERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGK---GLVAD------TYTYRSLITGLCSAG 588 (890)
Q Consensus 522 ~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~------~~~~~~l~~~~~~~g 588 (890)
.++..+.... ..+..+-....|.+...+...|++.+|...|.+.... ...+| ..+-..+...+-..+
T Consensus 431 ~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhh
Confidence 3366665443 4444566788999999999999999999999988765 12222 223444666677788
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 002701 589 RVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLK 668 (890)
Q Consensus 589 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 668 (890)
+.+.|.+++..+.+..+ .-...|-.+.......+...+|...++...... ..++..++.+...+.....+..|.+-|.
T Consensus 511 ~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred hhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence 99999999999998853 234455555544445678889999999888753 4477788888888888888888888776
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 002701 669 EMHDK-GLRPDNVIYTSMIDAKGK------------AGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAEL 735 (890)
Q Consensus 669 ~~~~~-~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 735 (890)
...+. ...+|......|.+.|.. .+..+.|+++|.+++... +-|..+-|.+.-.++..|++.+|..
T Consensus 589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHH
Confidence 66554 223577776677665542 235678888888888764 4477777778888888999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 736 LCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLD--GLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDN 812 (890)
Q Consensus 736 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 812 (890)
+|.+..+.. ..+..+|..++++|..+|++..|+++|+..++ ....+..+...|++++.+.|++.+|.+.+..+...
T Consensus 668 IFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 668 IFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999988763 34556788889999999999999999999888 55667888889999999999999999988888873
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-21 Score=206.73 Aligned_cols=661 Identities=12% Similarity=0.028 Sum_probs=455.1
Q ss_pred HhHHHHHHHHHhhCCCchhHHHHHHHHHHcCC-CchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcC-----------C
Q 002701 102 TASFCILIHGLVQNNLFWPASSLLQTLLLRGL-SPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNK-----------R 169 (890)
Q Consensus 102 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~ 169 (890)
...|...++-|...|+.++...+|+....... ...++-... ..+++.|+..|...+ .
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~-----------~~a~~~laay~s~~a~kek~~~~k~e~ 109 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQ-----------MKALDILAAYYSQLAMKEKKKDEKDEL 109 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHH-----------HHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 56688899999999999999999998773221 111111111 123444444443322 2
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHH
Q 002701 170 VADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQ--FGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMI 247 (890)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 247 (890)
+..|..+|+.+.......+...+.. ...|...|+ ++.|...|..+.+.. ++|+..+..-+...+..|+|..|+.+|
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~-~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yy 187 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQ-RGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYY 187 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhh-hhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHH
Confidence 4456666666643322212211111 112333343 588888888888876 777777777777777888899999999
Q ss_pred HHHHhCC--CCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HHhHHHHHHHHH---ccCChHHHHHHHHHHH
Q 002701 248 HFMDSNG--SDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKAD-VVTYCTLVLGLC---KVQEFEFGVWLMNEMI 321 (890)
Q Consensus 248 ~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~---~~~~~~~A~~~~~~~~ 321 (890)
...+... +.||+-. .+...+.+.|+.+.|+..|.+..+. .|+ +.++..|...-. ....+..|...+....
T Consensus 188 k~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay 263 (1018)
T KOG2002|consen 188 KKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAY 263 (1018)
T ss_pred HHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 8876553 3334322 2234455888888888888888875 343 233333322222 2234556666666655
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH
Q 002701 322 ELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPN--LFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNV 399 (890)
Q Consensus 322 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 399 (890)
..+ ..++.+.+.|...|.-.|++..+.++...+........ ..+|.-+..+|-..|++++|...|-+..+. .|+.
T Consensus 264 ~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~ 340 (1018)
T KOG2002|consen 264 KEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDN 340 (1018)
T ss_pred hhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCC
Confidence 443 34777888888888889999999888888776432211 234677888888899999999988777765 3443
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----ChhHHHHHHHHHHHcCCCCCHhHHH
Q 002701 400 --VTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLG----NLSAAESFFEEMIHKGLTPTVITYT 473 (890)
Q Consensus 400 --~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~ 473 (890)
..+.-+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+.++.- ..|...|.
T Consensus 341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l 418 (1018)
T KOG2002|consen 341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWL 418 (1018)
T ss_pred ccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHH
Confidence 345556788888999999999998888763 335666677777776664 4566777777766654 23666777
Q ss_pred HHHHHHHccCCHHHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC------hH
Q 002701 474 SLISGYCNEVKLNKAFRLYHEM----TGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLER---NVMPN------EV 540 (890)
Q Consensus 474 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~------~~ 540 (890)
.+...+-.. +...++..|... ...+..+.+...|.+.......|++++|...|+..... ...++ ..
T Consensus 419 ~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt 497 (1018)
T KOG2002|consen 419 ELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLT 497 (1018)
T ss_pred HHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhH
Confidence 666666443 344446655543 34455577788899999999999999999999887665 11222 22
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002701 541 TYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYC 620 (890)
Q Consensus 541 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 620 (890)
+--.+...+-..++++.|.+.|..+.+. .+.-+..|..++......++..+|...+..+...+ ..++..+..+...+.
T Consensus 498 ~~YNlarl~E~l~~~~~A~e~Yk~Ilke-hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l 575 (1018)
T KOG2002|consen 498 LKYNLARLLEELHDTEVAEEMYKSILKE-HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHL 575 (1018)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHH-CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHH
Confidence 3334566667788999999999999886 33334556566544455688899999999988775 447778888888999
Q ss_pred hcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002701 621 KEGRLKDALGACREMVERG-VNMDLVCYSVLIDGSLK------------QSDTRRYFGLLKEMHDKGLRPDNVIYTSMID 687 (890)
Q Consensus 621 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 687 (890)
+...+..|.+-|+.+.++- ..+|..+...|.+.+.+ .+..++|+++|.++.+.. +-+...-+.+.-
T Consensus 576 ~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgi 654 (1018)
T KOG2002|consen 576 KKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGI 654 (1018)
T ss_pred hhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhh
Confidence 9999999988777766542 23577777667665542 235678999999888764 557777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHH
Q 002701 688 AKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLAS-GSLPNQITYGCFLDYLTREGKME 766 (890)
Q Consensus 688 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~ 766 (890)
.++..|++.+|..+|.++.+... ....+|..+.++|...|++..|+++|+...+. ....+..+...|..++.+.|.+.
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 89999999999999999998742 35567888999999999999999999998876 33457888899999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHH
Q 002701 767 KAVQLHNAMLDGLLANTVTYNIL 789 (890)
Q Consensus 767 ~A~~~~~~~~~~~~~~~~~~~~l 789 (890)
+|.+....+....|.|+.....+
T Consensus 734 eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 734 EAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHHHHHHhCCccchHHhHH
Confidence 99999999988777666544333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-22 Score=205.88 Aligned_cols=387 Identities=17% Similarity=0.123 Sum_probs=258.7
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHH
Q 002701 469 VITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEV-TYNVLIE 547 (890)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~ 547 (890)
..+|..+.+.+-..|++++|+.+|+.+++.. +.....|..+..++...|+.+.|.+.|.+.++.+ |+.. ..+.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 3455555555555555555555555555541 1234455555555555555555555555555432 2222 2222333
Q ss_pred HHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 002701 548 GYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKD 627 (890)
Q Consensus 548 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 627 (890)
.+-..|+.++|...|.+.++... .-..+|..|...+-.+|+.-.|+..|++..+..+ .-...|-.|...|...+.+++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchH
Confidence 33345555555555555554311 1233455555555555555555555555555432 134455555566666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 628 ALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIG 707 (890)
Q Consensus 628 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 707 (890)
|+..|.+.....+. ..+.+..+...|..+|..+-|+..|++.++.. +.=...|+.+..++-..|++.+|...|.+.+.
T Consensus 271 Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 66666555544221 33444445555556666666666666665542 22245677888888888999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHH
Q 002701 708 EGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLP-NQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTY 786 (890)
Q Consensus 708 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 786 (890)
.. +.-..+.+.|...|...|.+++|..+|...++- .| -...++.|...|-.+|++++|+..|++++...|.-..+|
T Consensus 349 l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 349 LC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred hC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 63 334667888999999999999999999998854 44 356788899999999999999999999999777778899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 002701 787 NILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD-PLAYNFLIYGCC 864 (890)
Q Consensus 787 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 864 (890)
+.++..|-..|+.+.|+..+.+++. +.|.. ...+.|...|-..|+..+|+.-|++.++ ++|| +..|..++.++.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 9999999999999999999999998 66765 7889999999999999999999999999 8895 567788877754
Q ss_pred hcCCH
Q 002701 865 IRGEI 869 (890)
Q Consensus 865 ~~g~~ 869 (890)
-..+|
T Consensus 502 ~vcdw 506 (966)
T KOG4626|consen 502 IVCDW 506 (966)
T ss_pred HHhcc
Confidence 44333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-22 Score=205.31 Aligned_cols=432 Identities=18% Similarity=0.124 Sum_probs=355.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 002701 438 NSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRA 517 (890)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 517 (890)
..|.+-..+.|++++|++.-...-..+.. +....-.+-.++.+..+++....--....+. .+.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 34555566778888888876655544321 2222333335566666666655544444443 234567899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHcCCChHHHHHH
Q 002701 518 NKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYT-YRSLITGLCSAGRVSEAKEF 596 (890)
Q Consensus 518 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~ 596 (890)
|++++|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+.++. .|+... ...+...+...|++++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999975 336889999999999999999999999999875 455443 34456666778999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 002701 597 VDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLR 676 (890)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 676 (890)
+.+.++..+ .-..+|+.|...+...|++..|+..|++..+..+. -...|..|...|...+.+++|+..|.+..... +
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 999888753 35678899999999999999999999999987432 45678889999999999999999998887652 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHH
Q 002701 677 PDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPN-VVTYTALINGLCKAGYMDKAELLCKEMLASGSLPN-QITYGC 754 (890)
Q Consensus 677 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 754 (890)
...+.+..+...|...|.++-|+..|++.++. .|+ ...|+.|..++-..|++.+|...+++.+.. .|+ ....+.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~N 359 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNN 359 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHH
Confidence 34567777888888999999999999999987 454 678999999999999999999999999965 343 567788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 002701 755 FLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGY 833 (890)
Q Consensus 755 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 833 (890)
|...+...|.+++|..+|...++-.|.-....+.|+..|-.+|++++|+..++++++ +.|+. ..|+.++..|-..|+
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 999999999999999999999998888889999999999999999999999999998 88886 889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002701 834 LHEALKLWDSMLNKGLKPD-PLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFPS 887 (890)
Q Consensus 834 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 887 (890)
.+.|+..+.+++. +.|. ...+..|+..|-.+|+..+|+.-|++.++ +.||
T Consensus 438 v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 9999999999999 8884 57889999999999999999999999984 4455
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-19 Score=201.97 Aligned_cols=430 Identities=10% Similarity=-0.016 Sum_probs=305.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 002701 435 YPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGL 514 (890)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 514 (890)
..+......+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|+..++..++.. +.+...+..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34566778888999999999999998876 5677788888888999999999999999988762 34567788888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 002701 515 CRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAK 594 (890)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 594 (890)
...|++++|+..|......+. .+......++..+.. ..+........+... ++...+..+.. +..........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcch
Confidence 999999999988876655431 222222222222222 122233333333211 11111112222 21111111111
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002701 595 EFVDGLHREHCKLNEMCYSALLHG---YCKEGRLKDALGACREMVERGV--NMDLVCYSVLIDGSLKQSDTRRYFGLLKE 669 (890)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 669 (890)
.-+......... ....+..+... ....+++++|...|+...+.+. +.....+..+...+...|++++|+..+++
T Consensus 278 ~~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 278 AGLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 111111111100 00111111111 1235789999999999988652 23455677788888899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 002701 670 MHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQ 749 (890)
Q Consensus 670 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 749 (890)
..+.. +.....|..+...+...|++++|...|++.++.. +.+...|..+...+...|++++|+..|++.++.. +.+.
T Consensus 357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 98763 3345678888888999999999999999998874 3467888899999999999999999999999753 3457
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H-------HH
Q 002701 750 ITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-I-------TY 821 (890)
Q Consensus 750 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~-------~~ 821 (890)
..+..+...+.+.|++++|+..++.+++..|.++.+++.++.++...|++++|++.|+++.+. .|+. . .+
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHH
Confidence 778888899999999999999999999988889999999999999999999999999999874 3321 1 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 822 STIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDDMMRR 882 (890)
Q Consensus 822 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 882 (890)
+..+..+...|++++|..+++++++ +.| +...+..++..+.+.|++++|+++|+++.+.
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2222233446999999999999998 677 4567888999999999999999999998754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-16 Score=169.30 Aligned_cols=700 Identities=12% Similarity=0.065 Sum_probs=407.7
Q ss_pred HhHHHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 002701 102 TASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLMR 181 (890)
Q Consensus 102 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 181 (890)
.......++.+...|++++|..++..++.+.| .+..+|..|+.+|-.+|+.++++...-.+-
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp------------------~~~~ay~tL~~IyEqrGd~eK~l~~~llAA 200 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP------------------RNPIAYYTLGEIYEQRGDIEKALNFWLLAA 200 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc------------------cchhhHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45666777778888999999999999999887 455688999999999999999998877776
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChh-
Q 002701 182 EKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVV- 260 (890)
Q Consensus 182 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 260 (890)
...++ |-.-|..+..-..+.|++++|.-.|.++++.. +++.....--...|-+.|+...|...|.++....++.|..
T Consensus 201 HL~p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 201 HLNPK-DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred hcCCC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 66555 44778888888999999999999999999998 7777777777888889999999999999999885422222
Q ss_pred ---hHHHHHHHHHccCChhHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002701 261 ---VYNILIHGLCKSQRVFEAVEVKNGFVKRG-VKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLV 336 (890)
Q Consensus 261 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 336 (890)
.--.+++.+...++-+.|++.++.....+ -..+...++.++..+.+...++.|......+......+|..-+..-
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~- 357 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD- 357 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-
Confidence 22334556777777788999998888742 2344557778888888888899998888888764444443221000
Q ss_pred HHHHhcCCHHHHHHHHHHhccCCCCcCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcC
Q 002701 337 EGFRRKGKIDDAFNLVNKLGPLGVVPNLFV-YNALINSLCKERKFNEAEFLFNEMKQKGLSP--NVVTYSILIDSLCRRG 413 (890)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g 413 (890)
..++. -...+... ..+..++..+ +..+.-...+.+...+++. .........| +...|.-+..+|...|
T Consensus 358 ----~~~~~--~~~~~~~~-~~~~s~~l~v~rl~icL~~L~~~e~~e~ll--~~l~~~n~~~~d~~dL~~d~a~al~~~~ 428 (895)
T KOG2076|consen 358 ----ERRRE--EPNALCEV-GKELSYDLRVIRLMICLVHLKERELLEALL--HFLVEDNVWVSDDVDLYLDLADALTNIG 428 (895)
T ss_pred ----hhccc--cccccccC-CCCCCccchhHhHhhhhhcccccchHHHHH--HHHHHhcCChhhhHHHHHHHHHHHHhcc
Confidence 00000 00001111 1123344444 2222222233444444443 3344444333 4557778888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHH
Q 002701 414 EMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYH 493 (890)
Q Consensus 414 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 493 (890)
++.+|+.+|..+......-+...|-.+..+|...|.+++|.+.++..+...+. +...-..|-..+-+.|+.++|.+.++
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 88888888888887755556778888888888888888888888888876322 44556666777788888888888888
Q ss_pred HHhhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002701 494 EMTGK--------GIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEM 565 (890)
Q Consensus 494 ~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 565 (890)
.+..- +..|+........+.+...|+.++=+.+-..|+... .....+. -+..++.. ...
T Consensus 508 ~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~------~~~~~~f-----~~~~k~r~--~~~ 574 (895)
T KOG2076|consen 508 QIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDF------LKKRYIF-----PRNKKKRR--RAI 574 (895)
T ss_pred cccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH------HHHHHhc-----chHHHHHH--Hhh
Confidence 76421 233333434444555666676666444444443321 0000000 00000000 000
Q ss_pred hhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH------HHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 002701 566 AGKGLVADTYTYRSLITGLCSAGRVSEAKEFVD------GLHREHCKLNE--MCYSALLHGYCKEGRLKDALGACREMVE 637 (890)
Q Consensus 566 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 637 (890)
...+.+........++.+-.+.++.....+-.. .....+...+. ..+..++..+++.+++++|+.+...+..
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~ 654 (895)
T KOG2076|consen 575 AGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALE 654 (895)
T ss_pred ccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 000111222233333333333333222111111 01111111111 2334455566666677777666666554
Q ss_pred cCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC--C-
Q 002701 638 RGVN-MDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGE-GCV--P- 712 (890)
Q Consensus 638 ~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~--p- 712 (890)
...- -+...-. ..-...+.+....+++..|...++.|... +.. |
T Consensus 655 ~~~f~~~~~~~k-------------------------------~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 655 AYIFFQDSEIRK-------------------------------ELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred hhhhhccHHHHH-------------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 3110 0111000 00111222333445555555555554433 100 1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002701 713 NVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHG 792 (890)
Q Consensus 713 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 792 (890)
-...|+...+...+.|+-.--..++..........+..............+.+.-|++.+-.+....|.++.+-.+++-+
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLA 783 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 12234433344444443333333333333221111122222223334566777777777777777666666555555444
Q ss_pred HHhc----------CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------
Q 002701 793 FCTM----------GKFEEATKLLGGMMDNGIL-PDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD--------- 852 (890)
Q Consensus 793 ~~~~----------g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------- 852 (890)
+... -..-+++.++++..+.... -...++-.++++|-..|-..-|..+|++.++ ++|-
T Consensus 784 fih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~--~~p~~~~~~~~d~ 861 (895)
T KOG2076|consen 784 FIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE--VSPKDVTDPKEDN 861 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC--CCccccccccCCc
Confidence 4322 1234556666665543211 1346777899999999999999999999998 5431
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 853 ----PLAYNFLIYGCCIRGEITKAFELRDD 878 (890)
Q Consensus 853 ----~~~~~~l~~~~~~~g~~~~A~~~~~~ 878 (890)
..+-..|.-.|..+|+.+.|.+++++
T Consensus 862 ~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 862 YDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred ccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 12334556679999999999999875
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=202.94 Aligned_cols=300 Identities=13% Similarity=0.082 Sum_probs=161.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCCh
Q 002701 199 LVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLN---VVVYNILIHGLCKSQRV 275 (890)
Q Consensus 199 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 275 (890)
+...|++++|...|.++.+.+ +.+..++..++..+...|++++|...++.+.+....++ ..++..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555543 33444555555555555555555555555554321111 12344555555555555
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 002701 276 FEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSE----AAVSSLVEGFRRKGKIDDAFNL 351 (890)
Q Consensus 276 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 351 (890)
++|..+|+++.+. .+++..++..++..+++.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5555555555543 1233445555555555555555555555555544322211 1233455555566666666666
Q ss_pred HHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 002701 352 VNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIK 431 (890)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 431 (890)
|+++.+.. +.+...+..++..+.+.|++++|.+.|+++.+.+......++..++.+|++.|++++|...++++.+..
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-- 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 66655433 233445555666666666666666666666654222123445666666666666666666666666543
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc---cCCHHHHHHHHHHHhhCCCCCCHH
Q 002701 432 ATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCN---EVKLNKAFRLYHEMTGKGIAPNSY 505 (890)
Q Consensus 432 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 505 (890)
|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..++. .|+.++++.++++|.++++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 33344456666666666666666666666554 4566666666655543 345666666666666655444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=202.34 Aligned_cols=308 Identities=11% Similarity=0.074 Sum_probs=259.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 002701 156 GFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPD---IYIHSAVMR 232 (890)
Q Consensus 156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 232 (890)
....++..+...|++++|+..|.++.+.++. +..++..+...+...|++++|...++.+...+..++ ..++..++.
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4455677888999999999999999987643 667889999999999999999999999988642222 356888999
Q ss_pred HHHccCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHccC
Q 002701 233 SLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADV----VTYCTLVLGLCKVQ 308 (890)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~ 308 (890)
.|.+.|++++|..+|+++.+.. +.+..+++.++..+++.|++++|++.++++.+.+..+.. ..+..+...+.+.|
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999863 456789999999999999999999999999987544322 24556777888999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 002701 309 EFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFN 388 (890)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 388 (890)
++++|...++++.+.. +.+..++..++..|.+.|++++|.+.|+++.+.+......+++.++..|++.|++++|...++
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999864 335668888999999999999999999999875422224568899999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCC
Q 002701 389 EMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCK---LGNLSAAESFFEEMIHKGL 465 (890)
Q Consensus 389 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~ 465 (890)
.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..++. .|+.+++..+++++.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 99986 466667788999999999999999999999886 5788888888888775 5689999999999998876
Q ss_pred CCCHh
Q 002701 466 TPTVI 470 (890)
Q Consensus 466 ~p~~~ 470 (890)
.|+..
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 66654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-18 Score=195.63 Aligned_cols=255 Identities=11% Similarity=-0.031 Sum_probs=125.0
Q ss_pred CChHHHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 002701 553 GCMVKAFELLDEMAGKG-L-VADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALG 630 (890)
Q Consensus 553 g~~~~A~~~~~~m~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 630 (890)
+++++|.+.|++..+.+ . +.....+..+...+...|++++|...+++.....+ .....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHH
Confidence 44555555555555432 1 11223444444445555555555555555554431 133344445555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 002701 631 ACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGC 710 (890)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 710 (890)
.|+++++..+ .+...+..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|+..++..
T Consensus 387 ~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 5555544422 133444444444444444444444444444332 2223334444455555566666666665555432
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHH
Q 002701 711 VPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQI------TYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTV 784 (890)
Q Consensus 711 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 784 (890)
+.+...++.+...+...|++++|+..|++.++.....+.. .++.....+...|++++|..+++++++..|.+..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 2234555555566666666666666666655432110000 0111111222346666666666666654455555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 785 TYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 785 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
++..++..+...|++++|++.|+++.+
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566666666666666666666666654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-18 Score=194.93 Aligned_cols=359 Identities=13% Similarity=0.060 Sum_probs=270.7
Q ss_pred CCChHHHHHHHHHh-ccCCCCCccHhHHHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhH
Q 002701 79 LDDSRLALRFFNFL-GLHKTFNHSTASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGF 157 (890)
Q Consensus 79 ~~~~~~al~ff~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (890)
+.|++.-.-+|+-. +++.....+.......+..+.++|.+++|..++..++...|... .++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~------------------~~l 79 (656)
T PRK15174 18 QEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR------------------DLL 79 (656)
T ss_pred hhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch------------------hHH
Confidence 34555444444443 22222222233344456778899999999999999998877443 356
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 002701 158 DLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCEL 237 (890)
Q Consensus 158 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (890)
..|+.+....|++++|+..|+++....+. +..++..+...+.+.|++++|...|+++.+.. +.+..++..++..+...
T Consensus 80 ~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~ 157 (656)
T PRK15174 80 RRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLM 157 (656)
T ss_pred HHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 66778888899999999999999887655 56778888888999999999999999999876 66778888999999999
Q ss_pred CChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 002701 238 KDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLM 317 (890)
Q Consensus 238 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 317 (890)
|++++|...++.+....+. +...+..+ ..+...|++++|...++++.+....++...+..+...+...|++++|...+
T Consensus 158 g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 158 DKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999988776433 23333333 347888999999999999877643344445555567788889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 002701 318 NEMIELGLVPSEAAVSSLVEGFRRKGKIDD----AFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQK 393 (890)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 393 (890)
+...+.. +.+..++..++..|...|++++ |...|+++.+.. +.+...+..+...+.+.|++++|...+++..+.
T Consensus 236 ~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 236 ESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9988764 3466778888889999998885 788888888754 446678888888888899999999998888876
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 002701 394 GLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHK 463 (890)
Q Consensus 394 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 463 (890)
... +...+..+...+.+.|++++|+..++++...++. +...+..+...+...|++++|...|++..+.
T Consensus 314 ~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 314 HPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 322 4556777888888889999999999888876432 2233444567788889999999988888876
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-18 Score=192.10 Aligned_cols=332 Identities=12% Similarity=0.057 Sum_probs=268.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 002701 157 FDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCE 236 (890)
Q Consensus 157 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (890)
....+....+.|++++|+.+++......+. +..+...++.+....|++++|...|+++.... +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 444677889999999999999999887666 45556666677888999999999999999887 7778889999999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 002701 237 LKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWL 316 (890)
Q Consensus 237 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 316 (890)
.|++++|...++++.+.. +.+...+..++..+...|++++|...++++......+ ...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999999873 3356788889999999999999999999887654322 2233333 347788999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhH----HHHHHHHHHH
Q 002701 317 MNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNE----AEFLFNEMKQ 392 (890)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 392 (890)
++.+++....++......++..+...|++++|...++++.+.. +.+...+..+...+...|++++ |...|+...+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998877554555566667788899999999999999998765 4567778889999999999986 7889998887
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hH
Q 002701 393 KGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTV-IT 471 (890)
Q Consensus 393 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~ 471 (890)
... .+...+..+...+.+.|++++|...+++..+..+. +...+..+...+.+.|++++|...++++...+ |+. ..
T Consensus 279 l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~ 354 (656)
T PRK15174 279 FNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKW 354 (656)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHH
Confidence 632 25678888899999999999999999999887533 55677788889999999999999999988774 443 33
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhC
Q 002701 472 YTSLISGYCNEVKLNKAFRLYHEMTGK 498 (890)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 498 (890)
+..+...+...|+.++|...|++..+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 444567788899999999999998876
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-17 Score=188.58 Aligned_cols=415 Identities=11% Similarity=0.023 Sum_probs=245.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 002701 405 LIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVK 484 (890)
Q Consensus 405 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 484 (890)
.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|...+++.++..+. +...+..++..+...|+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 3344445566666666666655421 223344555666666666666666666665555211 33444555555566666
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 002701 485 LNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDE 564 (890)
Q Consensus 485 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 564 (890)
+++|+..++++++. .+.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...|..++|++.++.
T Consensus 99 ~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 66666666666554 222333 5555555666666666666666666543 22344444455555555666666655554
Q ss_pred HhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HhcCCh---HHHHHHHHHHH
Q 002701 565 MAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGY-----CKEGRL---KDALGACREMV 636 (890)
Q Consensus 565 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~---~~A~~~~~~~~ 636 (890)
... .|+.. ..+ . ......++... ...+++ ++|+..++.+.
T Consensus 176 ~~~---~p~~~--~~l--------~-------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 176 ANL---TPAEK--RDL--------E-------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred CCC---CHHHH--HHH--------H-------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 432 12100 000 0 00001111111 111223 56666676666
Q ss_pred Hc-CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 002701 637 ER-GVNMDLV-CY----SVLIDGSLKQSDTRRYFGLLKEMHDKGLR-PDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEG 709 (890)
Q Consensus 637 ~~-~~~~~~~-~~----~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 709 (890)
+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|..+|+.+.+..
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 43 1122211 11 11123345667778888888877766532 322 12224567778888888888888876543
Q ss_pred CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 002701 710 CVP---NVVTYTALINGLCKAGYMDKAELLCKEMLASGS-----------LPN---QITYGCFLDYLTREGKMEKAVQLH 772 (890)
Q Consensus 710 ~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~ 772 (890)
... .......+..++...|++++|...++++.+... .|+ ...+..+...+...|++++|+..+
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 111 123455566677788888888888888875421 123 224456667788889999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 002701 773 NAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP 851 (890)
Q Consensus 773 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 851 (890)
++++...|.+...+..++..+...|++++|++.++++.+ +.|+. ..+..++..+...|++++|...++++++ ..|
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~P 458 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REP 458 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCC
Confidence 999888888888999999999999999999999999887 45654 6666777788888999999999999988 777
Q ss_pred CHHHHHHHHH
Q 002701 852 DPLAYNFLIY 861 (890)
Q Consensus 852 ~~~~~~~l~~ 861 (890)
+......+-.
T Consensus 459 d~~~~~~~~~ 468 (765)
T PRK10049 459 QDPGVQRLAR 468 (765)
T ss_pred CCHHHHHHHH
Confidence 6554444433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-14 Score=148.40 Aligned_cols=482 Identities=12% Similarity=0.035 Sum_probs=318.3
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 002701 379 KFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFE 458 (890)
Q Consensus 379 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 458 (890)
+.+.|..++....+. ++.+.. |.-+|.+..-|+.|..++.+..+. ++.+..+|.+-...--.+|+.+...++++
T Consensus 391 ~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 391 EPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 334455555555553 111222 223444455556666666665544 34455555555555555566555555544
Q ss_pred HH----HHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 459 EM----IHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPN--SYTFTALISGLCRANKLTEAIKWFDEMLE 532 (890)
Q Consensus 459 ~~----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 532 (890)
+- ...|+..+...|..-...|-+.|..-.+..+....+.-|+... ..||..-...|.+.+.++-|..+|...++
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 43 2345555666666666666666666666666666655554332 24566666666677777777777766665
Q ss_pred CCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH
Q 002701 533 RNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCY 612 (890)
Q Consensus 533 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 612 (890)
.- +.+...|...+..--..|..++-..+++++... ++-....+......+...|++..|..++..+.+.++. +...|
T Consensus 545 vf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiw 621 (913)
T KOG0495|consen 545 VF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIW 621 (913)
T ss_pred hc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHH
Confidence 42 334555666665555667777777777777665 3334455555566666677777777777777766533 66677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002701 613 SALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKA 692 (890)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 692 (890)
-+-+........+++|..+|.+.... .|+...|..-+....-.++.++|++++++..+. ++.-...|..+.+.+-+.
T Consensus 622 laavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHH
Confidence 77777777777777777777776654 344445544444445566777777777776654 222345677777778788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002701 693 GNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLH 772 (890)
Q Consensus 693 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 772 (890)
++++.|...|..-.+. ++-.+..|..+.+.--+.|.+-+|..++++..-++ +.|...|...+..-.+.|+.+.|..+.
T Consensus 699 ~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888765554 34456677778777778888888888888887654 457778888888888889999998888
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 002701 773 NAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD 852 (890)
Q Consensus 773 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 852 (890)
.++++..|.+...|..-|+..-+.++-..+...+++. .-|......+...+....++++|.+.|.+.++ +.||
T Consensus 777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d 849 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPD 849 (913)
T ss_pred HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCc
Confidence 8888888888888888888887777766666666554 34667777788888888888889999988888 6674
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 853 -PLAYNFLIYGCCIRGEITKAFELRDDMMR 881 (890)
Q Consensus 853 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 881 (890)
..+|..+...+.++|.-++-.+++++...
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 46777777788888888888888877663
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-17 Score=191.83 Aligned_cols=391 Identities=12% Similarity=0.037 Sum_probs=237.7
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHH
Q 002701 480 CNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAF 559 (890)
Q Consensus 480 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 559 (890)
...|+.++|++++.+.... .+.+...+..+...+.+.|++++|.+++++.++.. +.+...+..++..+...|++++|.
T Consensus 26 ~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3444444444444444431 12233334444444444555555555554444432 223333444444444455555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002701 560 ELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERG 639 (890)
Q Consensus 560 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 639 (890)
..++++.+. .+.+.. +..+...+...|+.++|...++++.+..+. +...+..+...+...+..+.|+..++.+..
T Consensus 104 ~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-- 178 (765)
T PRK10049 104 VKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL-- 178 (765)
T ss_pred HHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC--
Confidence 555554443 122233 444444444455555555555555444322 333333444444444555555544443332
Q ss_pred CCCCH------HHHHHHHHHH-----HhcCCh---HHHHHHHHHHHHC-CCCCCH-HHHH----HHHHHHHhcCCHHHHH
Q 002701 640 VNMDL------VCYSVLIDGS-----LKQSDT---RRYFGLLKEMHDK-GLRPDN-VIYT----SMIDAKGKAGNLKEAF 699 (890)
Q Consensus 640 ~~~~~------~~~~~li~~~-----~~~~~~---~~A~~~~~~~~~~-~~~~~~-~~~~----~li~~~~~~g~~~~A~ 699 (890)
.|+. .....++... ...+++ ++|++.++.+.+. ...|+. ..+. ..+..+...|++++|+
T Consensus 179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 179 -TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred -CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1110 0111111111 112233 6788888888854 222222 1111 1123445779999999
Q ss_pred HHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 700 RLWDIMIGEGCV-PNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLP---NQITYGCFLDYLTREGKMEKAVQLHNAM 775 (890)
Q Consensus 700 ~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 775 (890)
..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++...|++++|...++.+
T Consensus 258 ~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 258 SEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999999987532 332 12225778999999999999999988653111 1344566677789999999999999999
Q ss_pred hcCCCC------------C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002701 776 LDGLLA------------N---TVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKL 840 (890)
Q Consensus 776 ~~~~~~------------~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 840 (890)
.+..|+ + ...+..++..+...|++++|++.++++... .+.+...+..++..+...|++++|++.
T Consensus 337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 886552 2 235567888999999999999999999874 233457889999999999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 841 WDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDDMMRR 882 (890)
Q Consensus 841 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 882 (890)
++++++ +.| +...+..++..+.+.|++++|..+++++++.
T Consensus 416 l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 416 LKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999 788 5677888888999999999999999999964
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.6e-16 Score=174.49 Aligned_cols=455 Identities=12% Similarity=0.039 Sum_probs=294.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 002701 373 SLCKERKFNEAEFLFNEMKQKGLSPNV--VTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNL 450 (890)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (890)
...+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|+..+++..... .........+...|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 345778888888888888775 3443 233 66667777788888888888777211 11222223335567777888
Q ss_pred hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 451 SAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEM 530 (890)
Q Consensus 451 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 530 (890)
++|+++++++++..+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8888888888777544 3555666667777778888888888877765 445555544544454456665688888888
Q ss_pred HHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH
Q 002701 531 LERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEM 610 (890)
Q Consensus 531 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 610 (890)
.+.+ +.+...+..++..+.+.|-...|.++..+-... +.+. ....| ..+.+.+..+........ ...
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~--~~~~l--------~~~~~a~~vr~a~~~~~~-~~~ 262 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE--HYRQL--------ERDAAAEQVRMAVLPTRS-ETE 262 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH--HHHHH--------HHHHHHHHHhhccccccc-chh
Confidence 7764 335666677777777778777777666553221 1111 11111 011111111111000000 000
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC-HHH-HH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 002701 611 CYSALLHGYCKEGRLKDALGACREMVERG-VNMD-LVC-YS---VLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTS 684 (890)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-~~~-~~---~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 684 (890)
.+ --.+.|+.-++.+...- ..|. ... .. -.+-++...+++.++++.++.+...+.+....+-..
T Consensus 263 r~----------~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 263 RF----------DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred hH----------HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 00 01345555555555421 1121 111 12 223456677888888888888887776655667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CC-
Q 002701 685 MIDAKGKAGNLKEAFRLWDIMIGEG-----CVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGS-----------LP- 747 (890)
Q Consensus 685 li~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p- 747 (890)
+.++|...+++++|..+|..+.... ..++......|..+|...+++++|..+++++.+... .|
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 8888888888888888888876642 122344456778888888888888888888886311 12
Q ss_pred -CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 002701 748 -NQ-ITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTI 824 (890)
Q Consensus 748 -~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l 824 (890)
|- ..+..++..+...|++.+|++.++++...-|.|......+++.+...|++.+|.+.++.+.. +.|+. .+....
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~ 490 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQ 490 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHH
Confidence 22 22344566778899999999999999888899999999999999999999999999977766 45654 667788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002701 825 IYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIY 861 (890)
Q Consensus 825 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 861 (890)
+.++...|++.+|..+.+.+++ ..|+......|-.
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r 525 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDR 525 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence 8888999999999999999998 7886655544444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9e-14 Score=142.91 Aligned_cols=619 Identities=11% Similarity=0.043 Sum_probs=428.6
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 002701 203 RQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVK 282 (890)
Q Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 282 (890)
++...|..++..+.+.+ +.++..|..-.+.--..|++..|..+..+=-+. ++.+...|---| +....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 34555556666665555 333444444444444455555554444332222 122333332222 234445555555
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCc
Q 002701 283 NGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVP 362 (890)
Q Consensus 283 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 362 (890)
...++. .+.++..|...... ..+...=..++...++. .|+.. .|-.+-....+.++|..++.++.+.= +.
T Consensus 339 A~Avr~-~P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~ 408 (913)
T KOG0495|consen 339 ANAVRF-LPTSVRLWLKAADL---ESDTKNKKRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQ 408 (913)
T ss_pred HHHHHh-CCCChhhhhhHHhh---hhHHHHHHHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cc
Confidence 555443 12222222211111 11122222333333332 12222 12223334455666777777776631 23
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCChhhHH
Q 002701 363 NLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMA----DEGIKATIYPYN 438 (890)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~ 438 (890)
+...| .+|.+..-++.|.++++...+. ++-+...|.+-...--.+|+.+...+++++.+ ..|...+...|-
T Consensus 409 s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 SMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 33333 3445556678888888888875 55577777776666667888888888877643 467777878888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 002701 439 SLISGHCKLGNLSAAESFFEEMIHKGLTPT--VITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCR 516 (890)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 516 (890)
.=...+-..|..--+..+....+..|+.-. ..||+.-...|.+.+.++-|..+|...++- ++.+...|...+..--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh
Confidence 878888888888888888888887776532 357888888899999999999999988875 45566777777776677
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 002701 517 ANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEF 596 (890)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 596 (890)
.|..++-..+|++.+..- +-....|......+...|+...|..++.+..+... .+...+..-+........++.|..+
T Consensus 563 hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHH
Confidence 799999999999998873 44566677777888889999999999999888743 3677888888888899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 002701 597 VDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLR 676 (890)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 676 (890)
|.+.... .+...+|.--+...--.++.++|++++++.++. ++--...|-.+...+-+.++.+.|.+.|..=.+. .+
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 9988875 456677777777777788999999999998886 2223456666777777888888888777654443 34
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002701 677 PDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFL 756 (890)
Q Consensus 677 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 756 (890)
.....|..+...--+.|.+-.|..++++..-.+ +-+...|...|+.-.+.|+.++|..++.+.++. .+.+...|..-|
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI 794 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAI 794 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHH
Confidence 456677777777788999999999999988775 447889999999999999999999999999876 455677777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHH
Q 002701 757 DYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGYLH 835 (890)
Q Consensus 757 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 835 (890)
...-+.++-..+. .+++....|+.+..+++..+-...++++|.+.|.+.+. ..||. .+|..+...+.++|.-+
T Consensus 795 ~le~~~~rkTks~----DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 795 WLEPRPQRKTKSI----DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HhccCcccchHHH----HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHH
Confidence 6666666644443 34445667888999999999999999999999999998 45665 89999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHH
Q 002701 836 EALKLWDSMLNKGLKPD-PLAYNFL 859 (890)
Q Consensus 836 ~A~~~~~~~~~~g~~p~-~~~~~~l 859 (890)
.-.+++.+... ..|. ...|...
T Consensus 869 d~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 869 DQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHhc--cCCCCCcHHHHH
Confidence 99999999887 6673 3445444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-15 Score=170.13 Aligned_cols=466 Identities=11% Similarity=0.031 Sum_probs=324.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHH
Q 002701 328 SEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNL--FVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSIL 405 (890)
Q Consensus 328 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 405 (890)
.+.+...-+....+.|+++.|+..|+++.+.. |+. ..+ .++..+...|+.++|+..+++.... .+........+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llal 108 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASA 108 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHH
Confidence 44556666777789999999999999998755 443 344 8888888999999999999999832 11123333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 002701 406 IDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKL 485 (890)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 485 (890)
...+...|++++|+++++++.+..+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 66888899999999999999998654 5667778889999999999999999999887 55655564444444446666
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002701 486 NKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEM 565 (890)
Q Consensus 486 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 565 (890)
.+|++.++++.+.. +.+...+..+...+.+.|-...|.++...-... . +...+..+ . .+.|.+..+-.
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l-~-------~~~~a~~vr~a 253 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQL-E-------RDAAAEQVRMA 253 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHH-H-------HHHHHHHHhhc
Confidence 67999999999873 446777888889999999999999777653221 1 11221111 1 11222222111
Q ss_pred hhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CC-CHHHH----HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 002701 566 AGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHC-KL-NEMCY----SALLHGYCKEGRLKDALGACREMVERG 639 (890)
Q Consensus 566 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 639 (890)
..++..- . . +---.+.|..-++.+...-. .| ....| .-.+-++...|++.++++.|+.+...+
T Consensus 254 ----~~~~~~~-~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 254 ----VLPTRSE-T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred ----ccccccc-h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 1111000 0 0 00012334444444443111 11 11111 122345667788888888888888777
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----
Q 002701 640 VNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKG-----LRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEG----- 709 (890)
Q Consensus 640 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----- 709 (890)
.+....+-..+.++|...+++++|..+++++.... .+++......|..+|...+++++|..+++.+.+..
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 65555677778888888888888888888876542 12334445677888888899999999888888731
Q ss_pred --------CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 002701 710 --------CVPNVV-TYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLL 780 (890)
Q Consensus 710 --------~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 780 (890)
..||-. .+..++..+...|++.+|++.++++... -+-|......+.+.+...|.+.+|.+.++.+....|
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 112222 2344567788899999999999999875 356888999999999999999999999977777888
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002701 781 ANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIY 826 (890)
Q Consensus 781 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 826 (890)
.+..+....+..+...+++++|.++.+.+.+ ..|+......|-+
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r 525 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDR 525 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence 8888999999999999999999999999988 4566654444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-14 Score=153.46 Aligned_cols=667 Identities=12% Similarity=0.066 Sum_probs=386.7
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChhhHHHH
Q 002701 186 MPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNIL 265 (890)
Q Consensus 186 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 265 (890)
.|.+...-...+.++-.|++++|..++.++++.. +.+...|..|..+|-..|+.+++...+-.+--.. +.|...|..+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~l 213 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRL 213 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 3445555556666666688999999999988887 6777888888888888888888887765554333 3355778888
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHh
Q 002701 266 IHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEA----AVSSLVEGFRR 341 (890)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 341 (890)
.....++|++++|.-+|.+.++.. +++...+..-...|-+.|+...|..-|.++.....+.+-. .....++.|..
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888763 2333333344555667788888888888877765433322 23334555666
Q ss_pred cCCHHHHHHHHHHhccCC-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 002701 342 KGKIDDAFNLVNKLGPLG-VVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVS 420 (890)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 420 (890)
.++-+.|.+.++.....+ -.-+...++.++..+.+...++.|......+......+|..-+.+- ..++ .
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~-----~ 362 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRR-----E 362 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcc-----c
Confidence 666677777776665421 1233345666677777777777777776666654333333322110 0000 0
Q ss_pred HHHHHH--HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 002701 421 FLGKMA--DEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKG--LTPTVITYTSLISGYCNEVKLNKAFRLYHEMT 496 (890)
Q Consensus 421 ~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 496 (890)
-+.-.. ..+..++..+ -.+.-++.+....+....+...+.... +.-+...|.-+.++|...|++.+|+.+|..+.
T Consensus 363 ~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred cccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 000000 0112223333 122223333344444444444444444 33345667778888888888888888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhC--------
Q 002701 497 GKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGK-------- 568 (890)
Q Consensus 497 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------- 568 (890)
.....-+...|-.+..+|...|.+++|.+.++..+... +.+...-..|...+.+.|+.++|.+.++.+..-
T Consensus 442 ~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~ 520 (895)
T KOG2076|consen 442 NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC 520 (895)
T ss_pred cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc
Confidence 76444456778888888888888888888888887764 345666677777888888888888888875422
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 002701 569 GLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYS 648 (890)
Q Consensus 569 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 648 (890)
+..|+........+.+.+.|+.++=......|+... ....++. . +..++... .....+..-......
T Consensus 521 a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~------~~~~~~f---~--~~~k~r~~--~~~~~~~~~~~~~~~ 587 (895)
T KOG2076|consen 521 AWEPERRILAHRCDILFQVGKREEFINTASTLVDDF------LKKRYIF---P--RNKKKRRR--AIAGTTSKRYSELLK 587 (895)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH------HHHHHhc---c--hHHHHHHH--hhccccccccchhHH
Confidence 233344444455566667777666444444443321 0000000 0 00000000 000000111112222
Q ss_pred HHHHHHHhcCChHHHHHH------HHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHH----
Q 002701 649 VLIDGSLKQSDTRRYFGL------LKEMHDKGLRPDN--VIYTSMIDAKGKAGNLKEAFRLWDIMIGEGC-VPNVV---- 715 (890)
Q Consensus 649 ~li~~~~~~~~~~~A~~~------~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~---- 715 (890)
.++.+-.+.++......- +......|+.-+. ..+.-++...++.+++++|..+...+..... ..+..
T Consensus 588 ~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~ 667 (895)
T KOG2076|consen 588 QIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKE 667 (895)
T ss_pred HHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHH
Confidence 222222222221111111 1111112222222 2455667788899999999999888876521 11222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC-CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-HHHHHHHH
Q 002701 716 TYTALINGLCKAGYMDKAELLCKEMLAS-GS--LP-NQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLAN-TVTYNILI 790 (890)
Q Consensus 716 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~ 790 (890)
.-...+.+.+..+++..|...+..|+.. +. .| -...|+...+...+.++-.-=.+++..+....+.+ +.....-+
T Consensus 668 l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~g 747 (895)
T KOG2076|consen 668 LQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYG 747 (895)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeec
Confidence 2234456677899999999999999865 11 22 23345545555556655444444554444433333 33344445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHh----------cCCHHHHHHHHHHHHhCCC-CCCHHHHHH
Q 002701 791 HGFCTMGKFEEATKLLGGMMDNGILPDCITYS-TIIYQYCK----------RGYLHEALKLWDSMLNKGL-KPDPLAYNF 858 (890)
Q Consensus 791 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~~~~~g~-~p~~~~~~~ 858 (890)
..+...+.+.-|+..+-++.. ..||....+ .++-++.. +-..-.++.++.+..+... .....+++.
T Consensus 748 h~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YN 825 (895)
T KOG2076|consen 748 HNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYN 825 (895)
T ss_pred hhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 556678899999998888876 346632222 22222221 1124456777766666211 124678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 859 LIYGCCIRGEITKAFELRDDMMRR 882 (890)
Q Consensus 859 l~~~~~~~g~~~~A~~~~~~m~~~ 882 (890)
++++|-..|-..-|..+|++++..
T Consensus 826 igRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 826 IGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHcccHHHHHHHHHHHhCC
Confidence 999999999999999999999943
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-15 Score=148.94 Aligned_cols=475 Identities=15% Similarity=0.108 Sum_probs=282.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHH
Q 002701 371 INSLCKERKFNEAEFLFNEMKQKGLSPNVVTY-SILIDSLCRRGEMDIAVSFLGKMADEGIKAT----IYPYNSLISGHC 445 (890)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~ 445 (890)
..-|..+....+|+..|+-+.+....||.-.. ..+...+.+..++.+|+++++-.+..-+..+ +.+.+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 33444455555666666666655555554322 1233445555566666666655554322111 123444444555
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC------------CCHHHHHHHHH-
Q 002701 446 KLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIA------------PNSYTFTALIS- 512 (890)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------------~~~~~~~~li~- 512 (890)
+.|+++.|+..|+...+. .|+..+-..|+-++...|+-++..+.|.+|+.-... |+....+..|.
T Consensus 288 q~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred ecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 666666666666666555 455554444444444556666666666666543222 22222222211
Q ss_pred ----HHHhcC--CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 002701 513 ----GLCRAN--KLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCS 586 (890)
Q Consensus 513 ----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 586 (890)
-.-+.+ +-++++-.--+++.--+.|+-. . | .+-.++.+..-.......+.. ..-..-+.+
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa---~--------g-~dwcle~lk~s~~~~la~dle--i~ka~~~lk 431 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA---A--------G-CDWCLESLKASQHAELAIDLE--INKAGELLK 431 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchh---c--------c-cHHHHHHHHHhhhhhhhhhhh--hhHHHHHHh
Confidence 111111 1111111111111111111110 0 0 111122222111110000100 111234667
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 002701 587 AGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCK--EGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYF 664 (890)
Q Consensus 587 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 664 (890)
.|+++.|++++.-+.+...+.....-+.|...+.- ..++.+|...-+..+... .-+......-.+.....|++++|.
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHH
Confidence 88888888888877766433333333333332222 335666666655554321 112222222222334578889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 002701 665 GLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASG 744 (890)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 744 (890)
+.+++....+..-....|+.-+ .+.+.|++++|+.+|-++... +..+......+.+.|-...+..+|++++-+....
T Consensus 511 ~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 9999888765444444555433 345789999999999777543 2346777778888999999999999999887653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002701 745 SLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTI 824 (890)
Q Consensus 745 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 824 (890)
++.|..+..-|.+.|-+.|+-.+|.+.+-.-..-+|-|..+...|+.-|....-+++|+.+|+++.- +.|+..-|..+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 4557888999999999999999999999888888999999999999999999999999999999876 78999999877
Q ss_pred HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 002701 825 IY-QYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGE 868 (890)
Q Consensus 825 ~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 868 (890)
+. ++.+.|++.+|..+|+....+ ++.|.....-|++.+...|-
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 55 456789999999999998874 55577888888887776663
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-15 Score=149.59 Aligned_cols=460 Identities=12% Similarity=0.060 Sum_probs=306.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----hHHHHH
Q 002701 401 TYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYP-YNSLISGHCKLGNLSAAESFFEEMIHKGLTPTV----ITYTSL 475 (890)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l 475 (890)
....|..-|.......+|+..++-+++...-|+.-. -..+.+.+.+..++..|+++++..+..-+..+- ...+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 344456667777788999999999888877776643 345677788999999999999988876322222 234444
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH--------HHHHH
Q 002701 476 ISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTY--------NVLIE 547 (890)
Q Consensus 476 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~li~ 547 (890)
.-.+.+.|.++.|+.-|+...+. .||..+-..|+-++...|+-++..+.|.+|+.....||..-| ..|+.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 55678999999999999998876 688877777777888889999999999999875433332211 11222
Q ss_pred HHHHcC-----------ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002701 548 GYCREG-----------CMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALL 616 (890)
Q Consensus 548 ~~~~~g-----------~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 616 (890)
--.+.. +.++++-.-.+++.--+.|+-.+ | .+-+.+.+..-.-. +.-...--.-.
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-----------g-~dwcle~lk~s~~~--~la~dlei~ka 426 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-----------G-CDWCLESLKASQHA--ELAIDLEINKA 426 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-----------c-cHHHHHHHHHhhhh--hhhhhhhhhHH
Confidence 111111 11122211111211111222100 0 01111111111100 00000111123
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002701 617 HGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDG-SLKQ-SDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGN 694 (890)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 694 (890)
-.|.+.|+++.|++++.-+.++.-..-...-+.|-.. |.+- .++..|..+-......+ +-+......-...-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 4578999999999999988876433222233333222 2222 35566666666554332 2223332222223336799
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 695 LKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNA 774 (890)
Q Consensus 695 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 774 (890)
+++|...|.+.+..+..-....||. .-.+-..|++++|++.|-++..- +..+..+...+.+.|....+..+|++++.+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 9999999999987532222223332 33466789999999999887643 345777888899999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 002701 775 MLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPL 854 (890)
Q Consensus 775 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 854 (890)
+...+|.|+.++..|++.|-+.|+..+|.+..-.--.. ++-+..+...|..-|....-+++|+.+|+++.- +.|+..
T Consensus 584 ~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 99999999999999999999999999999887665543 444668888899889999999999999999988 999999
Q ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHC
Q 002701 855 AYNFLI-YGCCIRGEITKAFELRDDMMRR 882 (890)
Q Consensus 855 ~~~~l~-~~~~~~g~~~~A~~~~~~m~~~ 882 (890)
-|..++ .++.++|++++|.++|+...++
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 998877 5678899999999999998754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-13 Score=133.37 Aligned_cols=236 Identities=19% Similarity=0.246 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 002701 435 YPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGL 514 (890)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 514 (890)
.++..+|.++|+--..+.|.+++++..+...+.+..+||.+|.+-.- ....++..+|....+.||..|+|+++.+.
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 34444444444444444444444444444334444445544433211 11144555555555555555555555555
Q ss_pred HhcCCHHH----HHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhh----CCCC----CCHHHHHHHH
Q 002701 515 CRANKLTE----AIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVK-AFELLDEMAG----KGLV----ADTYTYRSLI 581 (890)
Q Consensus 515 ~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~----~~~~~~~~l~ 581 (890)
.+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++.. +.+. .|...+...+
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM 363 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAM 363 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHH
Confidence 55555443 33445555555666666666666665555555433 2333333222 1111 1333444555
Q ss_pred HHHHcCCChHHHHHHHHHHHHcC----CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002701 582 TGLCSAGRVSEAKEFVDGLHREH----CKL---NEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGS 654 (890)
Q Consensus 582 ~~~~~~g~~~~a~~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 654 (890)
..|....+.+-|.++..-+.... +.+ ....|..+....|+....+.-...|+.|+-+-+-|+..+...++.+.
T Consensus 364 ~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~ 443 (625)
T KOG4422|consen 364 SICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRAL 443 (625)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHH
Confidence 55555566666665555443321 011 12234445555666666666666777666665666666666666666
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 002701 655 LKQSDTRRYFGLLKEMHDKG 674 (890)
Q Consensus 655 ~~~~~~~~A~~~~~~~~~~~ 674 (890)
.-.+.++-.-+++.+++..|
T Consensus 444 ~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 444 DVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hhcCcchhHHHHHHHHHHhh
Confidence 66666666666666655544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-13 Score=129.70 Aligned_cols=240 Identities=16% Similarity=0.257 Sum_probs=166.6
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 002701 361 VPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSL 440 (890)
Q Consensus 361 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 440 (890)
+.+..+|..||.++|+--..+.|.+++++......+.+..+||.+|.+-.- ....+++.+|......||..++|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 455678888888888888888888888888877667788888888766432 2236788888888888888888888
Q ss_pred HHHHHhcCChhH----HHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHH-HHHHHHHHhh----CCCCC----CHHHH
Q 002701 441 ISGHCKLGNLSA----AESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNK-AFRLYHEMTG----KGIAP----NSYTF 507 (890)
Q Consensus 441 i~~~~~~g~~~~----A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~~----~~~~~ 507 (890)
+....+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.+.| +..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 888888887654 45677788888888888888888888888877644 3334433332 22222 33445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 002701 508 TALISGLCRANKLTEAIKWFDEMLERN----VMPN---EVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSL 580 (890)
Q Consensus 508 ~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 580 (890)
...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|+-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 556666667777777777665443211 2222 223555666777777777777777777776666777777777
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcC
Q 002701 581 ITGLCSAGRVSEAKEFVDGLHREH 604 (890)
Q Consensus 581 ~~~~~~~g~~~~a~~~~~~~~~~~ 604 (890)
+++....|.++-..+++.+++..|
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhh
Confidence 777777777777777776666554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-12 Score=125.71 Aligned_cols=476 Identities=10% Similarity=0.064 Sum_probs=282.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 002701 363 NLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLIS 442 (890)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 442 (890)
+...|-.-..-=...+++..|..+|+..+.-. ..+...|...+.+=.+...+..|..++++.+..-+.. ...|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-dqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-DQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-HHHHHHHHH
Confidence 33344333333344566677777777777654 2355666666777777777888888888777652222 234444555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002701 443 GHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTE 522 (890)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 522 (890)
+--..|++..|.++|++-.+. .|+...|++.|+.-.+-+.++.|..+|+..+-. .|++.+|.-...--.++|....
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 555667888888888777765 677788888887777777888888888777653 4777777777776677777777
Q ss_pred HHHHHHHHHHCCCCCChH----HHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHcCCChHHHHHH
Q 002701 523 AIKWFDEMLERNVMPNEV----TYNVLIEGYCREGCMVKAFELLDEMAGKGLVAD--TYTYRSLITGLCSAGRVSEAKEF 596 (890)
Q Consensus 523 A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 596 (890)
|..+++..++.- .|.. .+.+....-.++..++.|.-+|.-.+.. ++.+ ...|..+..---+-|+.......
T Consensus 226 aR~VyerAie~~--~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 226 ARSVYERAIEFL--GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 877777776541 1222 2333333333556677777777766665 2222 23333333333333443332221
Q ss_pred --------HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHH
Q 002701 597 --------VDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLV-CYSVLIDGSLKQSDTRRYFGLL 667 (890)
Q Consensus 597 --------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~ 667 (890)
++...+.+ +.|-.+|-..++.....|+.+...++|+..+..-++.... .|...|-...
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi------------ 369 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI------------ 369 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH------------
Confidence 22333332 2344555555555555566666666666665542211110 1111110000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcCChhHHHHHHHHHHHC
Q 002701 668 KEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTAL----INGLCKAGYMDKAELLCKEMLAS 743 (890)
Q Consensus 668 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~ 743 (890)
+-.+-.=....+.+.+.++|+..++. ++-...|+.-+ .....++.++..|.+++...+
T Consensus 370 ---------------nYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-- 431 (677)
T KOG1915|consen 370 ---------------NYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-- 431 (677)
T ss_pred ---------------HHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--
Confidence 00000011356677777777777663 23334444333 333346677777877777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHH
Q 002701 744 GSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGIL-PDCITYS 822 (890)
Q Consensus 744 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~ 822 (890)
|..|-..++...|..-.+.++++....+|++.++-.|.|..+|...+..-...|+++.|..+|+-+++.... --...|.
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 667777777777777777778888888888887777777777777777777778888888888777754221 1125566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 002701 823 TIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCC-----IRG-----------EITKAFELRDDMM 880 (890)
Q Consensus 823 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 880 (890)
+.|.--...|.+++|..+|+++++ ..+...+|...+.-=. +.| +...|.++|+++.
T Consensus 512 aYIdFEi~~~E~ekaR~LYerlL~--rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 512 AYIDFEIEEGEFEKARALYERLLD--RTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HhhhhhhhcchHHHHHHHHHHHHH--hcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 666666777788888888888877 4555556655554322 334 5566777777665
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-12 Score=134.75 Aligned_cols=686 Identities=13% Similarity=0.052 Sum_probs=348.7
Q ss_pred CCCCccHhHHHHHHHHHhhCCCchhHHHHHHHHHHcC-CCchHHHHHHHHHHhhcC------CCchhhHHHHHHHHHhcC
Q 002701 96 KTFNHSTASFCILIHGLVQNNLFWPASSLLQTLLLRG-LSPKEAFDSLFDCYEKFG------FSSSLGFDLLIQSYVQNK 168 (890)
Q Consensus 96 ~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~ 168 (890)
.|..++..+|..++-.|+..|..+.|- +|.-+-..+ |....+|..++..+...+ .|.+.+|..|..+|...|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hG 97 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHG 97 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhcc
Confidence 344456799999999999999998887 777776665 455677888887655443 246789999999999999
Q ss_pred ChhHHHHHHHH----HH----hCC-----------------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC
Q 002701 169 RVADGVFVFRL----MR----EKH-----------------LMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVG-ILP 222 (890)
Q Consensus 169 ~~~~A~~~~~~----~~----~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 222 (890)
+... ++..++ +. ..| ..|+..+ .+.-++-.|-++.+.++...+.... ..|
T Consensus 98 Dli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pvsa~~~p 173 (1088)
T KOG4318|consen 98 DLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAP 173 (1088)
T ss_pred chHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCcccccch
Confidence 8654 322222 11 111 1133221 2222333445555555553332111 011
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 002701 223 DIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVL 302 (890)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 302 (890)
..+ .++-... .....+++.....+..-.|++.+|..++..-.-.|+.+.|..++.+|.+.|++-+..-|..|+-
T Consensus 174 ~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 174 FQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred HHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence 111 1111111 1112222222222211136666666666666666666666666666666666666655555554
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-------------------------------
Q 002701 303 GLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNL------------------------------- 351 (890)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~------------------------------- 351 (890)
| .++...+..++.-|.+.|+.|+..++...+..+..+|....+...
T Consensus 248 g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~ 324 (1088)
T KOG4318|consen 248 G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRK 324 (1088)
T ss_pred c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHH
Confidence 4 566666666666666666666666665555555444432221111
Q ss_pred -----HHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCc-CHHHHHHHHHHHHhcCCH--HHHHHH
Q 002701 352 -----VNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQK--GLSP-NVVTYSILIDSLCRRGEM--DIAVSF 421 (890)
Q Consensus 352 -----~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p-~~~~~~~li~~~~~~g~~--~~A~~~ 421 (890)
+.+..-.|+.....+|...+.. ...|+-++..++-..|..- ...+ ++..|..++.-|.+.-+. .+-...
T Consensus 325 ~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~ 403 (1088)
T KOG4318|consen 325 SVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYY 403 (1088)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1111111222222223222221 1245555555555444321 1111 233444444444432111 111111
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CC-------CCHhHHHHHHHHHHccCCHHHHHH
Q 002701 422 LGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKG----LT-------PTVITYTSLISGYCNEVKLNKAFR 490 (890)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~-------p~~~~~~~li~~~~~~g~~~~A~~ 490 (890)
..+.+... .+....-.+.+...+ -+...+++.+..+.... .. +-...-+.++..++..-+..+++.
T Consensus 404 ~~qgls~~--l~se~tp~vsell~~-lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~ 480 (1088)
T KOG4318|consen 404 AGQGLSLN--LNSEDTPRVSELLEN-LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILC 480 (1088)
T ss_pred HHHHHHhh--hchhhhHHHHHHHHH-hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111110 001111111111111 13333333333322111 01 111234455666666666666665
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhC
Q 002701 491 LYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERN--VMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGK 568 (890)
Q Consensus 491 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 568 (890)
.-+.....-++ ..|..||+-++..+..+.|..+.++..... +..+..-+..+.+.+.+.+....+..++.++.+.
T Consensus 481 ~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~ 557 (1088)
T KOG4318|consen 481 DEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSS 557 (1088)
T ss_pred HHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHH
Confidence 54444332111 568889999999999999999888875432 3345566888888889999999999999888764
Q ss_pred CCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 002701 569 GLVAD--TYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVC 646 (890)
Q Consensus 569 ~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 646 (890)
-...+ ..++..+.......|+.+...++++-+...|...+ .-++....+.++...|.++++...+. .+|.+..
T Consensus 558 a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~ 632 (1088)
T KOG4318|consen 558 AENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKD 632 (1088)
T ss_pred hhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHH-hcCChHH
Confidence 22112 34455666777788888888888887777664431 23334455666777777776665544 2333333
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----------------------
Q 002701 647 YSVLIDGSL--KQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLW---------------------- 702 (890)
Q Consensus 647 ~~~li~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~---------------------- 702 (890)
...+...+. ...+++.+.++-.... .|.++|+..+|.++.
T Consensus 633 ~e~lcrlv~ke~td~~qk~mDls~~iq----------------~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~ 696 (1088)
T KOG4318|consen 633 LEGLCRLVYKETTDSPQKTMDLSIPIQ----------------KFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVP 696 (1088)
T ss_pred HHHHHHHHHhhccccHHHHHhhcchhH----------------HHHhcccccchhhccccCcccccCCCccccccCcccc
Confidence 333322222 1122222222211111 122333333333222
Q ss_pred -----HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 002701 703 -----DIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREG---KMEKAVQLHNA 774 (890)
Q Consensus 703 -----~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~ 774 (890)
+.+.+.| ....|+..|.+.|++++|..++.++. +.|+..+...++..+.+.. +..++..-.++
T Consensus 697 lEll~elt~~lg------~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ek 767 (1088)
T KOG4318|consen 697 LELLLELTHELG------KNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEK 767 (1088)
T ss_pred HHHHHHHHhHhH------HHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHH
Confidence 2221111 11225666777777777777777774 5666666666666654432 34444444444
Q ss_pred Hhc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002701 775 MLD---GLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRG 832 (890)
Q Consensus 775 ~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 832 (890)
..+ ..+.+...|..-+...++..+.+.|.+.|.+..+.....+..++..+++++....
T Consensus 768 as~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 768 ASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred HHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 443 3333344444444444555555667777777776655555666777777666544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-13 Score=141.98 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=58.4
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 002701 396 SPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSL 475 (890)
Q Consensus 396 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 475 (890)
.|++.+|..++.+-...|+++.|..++.+|.+.|++.+..-|-.|+-+ .++..-+..++.-|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 367777777777777777777777777777777777666655555544 56666666777777777777777777666
Q ss_pred HHHHHccCC
Q 002701 476 ISGYCNEVK 484 (890)
Q Consensus 476 i~~~~~~g~ 484 (890)
+..+..+|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 666555444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-11 Score=118.33 Aligned_cols=434 Identities=12% Similarity=0.100 Sum_probs=299.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH-HHHHHHHHHH
Q 002701 331 AVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNV-VTYSILIDSL 409 (890)
Q Consensus 331 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~ 409 (890)
.+...++.=..++++..|..+|+++...+ ..+...|-.-+..=.++..+..|..+++..... -|-+ ..|-..+..=
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHH
Confidence 33333444456788999999999998865 567788888889999999999999999999875 3433 2344444445
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHH
Q 002701 410 CRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAF 489 (890)
Q Consensus 410 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 489 (890)
-..|++..|.++|++-.+- .|+..+|++.|+.-.+-..++.|..++++.+-. .|++.+|.-....-.+.|.+..|.
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 5679999999999998874 789999999999999999999999999999865 689999999999889999999999
Q ss_pred HHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHHcCChHHHHHH----
Q 002701 490 RLYHEMTGK-GI-APNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPN--EVTYNVLIEGYCREGCMVKAFEL---- 561 (890)
Q Consensus 490 ~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~---- 561 (890)
.+|+...+. |- .-+...+.+...--.++..++.|.-+|+-.++. ++.+ ...|......--+-|+.......
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999998875 21 112344555555555778899999999988876 2323 34455555444455665444332
Q ss_pred ----HHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHH--------HHhcCChHHH
Q 002701 562 ----LDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNE-MCYSALLHG--------YCKEGRLKDA 628 (890)
Q Consensus 562 ----~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~--------~~~~g~~~~A 628 (890)
|+.+++. .+.|-.++...++.....|+.+...++++.++..-++.+. ..|...|.. -....+.+.+
T Consensus 307 Rk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3444444 3447778888888888899999999999999987443322 223333322 2346778888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 629 LGACREMVERGVNMDLVCYSVLIDGS----LKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDI 704 (890)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 704 (890)
.++|+..++. ++....|+..+--.| .++.+...|..++...+ |.-|...+|...|..=.+.++++.+..+|++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888887774 444555555543333 25556666666665544 3456666666666666666677777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 002701 705 MIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGS-LPNQITYGCFLDYLTREGKMEKAVQLHNAMLD 777 (890)
Q Consensus 705 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 777 (890)
.++.+ +.|..+|......-...|+.+.|..+|+-.++... .-....|-..|+.-...|.++.|..+|+..++
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 66654 33556666666655666777777777766664421 11234455555555666666777777666666
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-11 Score=128.80 Aligned_cols=505 Identities=15% Similarity=0.089 Sum_probs=318.0
Q ss_pred hcCCHHHHHHHHHHhccCCCCcCHHHHHHHHH---HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 002701 341 RKGKIDDAFNLVNKLGPLGVVPNLFVYNALIN---SLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDI 417 (890)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 417 (890)
+.+...++..-+......+..-+...+..+-. .|+..++.+++ +|-.......-|. .+.++
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~R--------------e~~~d 302 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPR--------------ENIED 302 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhcccc--------------ccHHH
Confidence 45566677777666666665555555544433 33445555555 2222222222222 22222
Q ss_pred HHHH----HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHH
Q 002701 418 AVSF----LGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYH 493 (890)
Q Consensus 418 A~~~----~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 493 (890)
+.-. +.++....+.-+..+|..+.-+....|+++.+.+.|++....-+. ....|..+...+...|.-..|..+++
T Consensus 303 ~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 303 AILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHH
Confidence 2211 222222234446778888888888999999999999998755333 56778888888999999999999998
Q ss_pred HHhhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC--CC--CCChHHHHHHHHHHHH-----------cCChH
Q 002701 494 EMTGKGIAPNSYTFTALISGLC--RANKLTEAIKWFDEMLER--NV--MPNEVTYNVLIEGYCR-----------EGCMV 556 (890)
Q Consensus 494 ~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~-----------~g~~~ 556 (890)
+-....-.|+..+--.++...| +.+.+++++++-.+.+.. +. ......|..+.-+|.. .....
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 8766532344444334443332 457777777777666651 11 1123445555444432 12245
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002701 557 KAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMV 636 (890)
Q Consensus 557 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 636 (890)
++++.+++..+.+.. |+.+...+.--|...++++.|.....+..+.+...+...|..++-.+...+++.+|+.+.+...
T Consensus 462 kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 788888888887544 4455555666678889999999999999998777899999999999999999999999998877
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC
Q 002701 637 ERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDK--GLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGE--GCVP 712 (890)
Q Consensus 637 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p 712 (890)
..- .-|......-+..-...++.++++.....+... ...+-. ..++-....+....+.-. ....
T Consensus 541 ~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q-----------~~~~~g~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 541 EEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ-----------QTLDEGKLLRLKAGLHLALSQPTD 608 (799)
T ss_pred HHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh-----------hhhhhhhhhhhhcccccCcccccc
Confidence 641 112222222233334567888888777666532 000000 111111112222222111 0111
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHH
Q 002701 713 NVVTYTALINGLCKAGYMDKAELLCKEMLASGSL--PN------QITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTV 784 (890)
Q Consensus 713 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 784 (890)
...++..+..... -+...+..-.. +.+.-.. |+ ...|......+.+.++.++|...+.++.+..+-...
T Consensus 609 a~s~sr~ls~l~a--~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~ 685 (799)
T KOG4162|consen 609 AISTSRYLSSLVA--SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSAS 685 (799)
T ss_pred cchhhHHHHHHHH--hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHH
Confidence 1222222222111 11111110000 1111111 22 234556667788899999999888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCC-CHHHHHHHH
Q 002701 785 TYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGYLHEALK--LWDSMLNKGLKP-DPLAYNFLI 860 (890)
Q Consensus 785 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p-~~~~~~~l~ 860 (890)
.|+..+..+...|.+++|.+.|..+.. +.|+. ....+++.++.+.|+..-|.. ++..+++ ++| ++..|..++
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLG 761 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHH
Confidence 999999999999999999999999887 56655 778899999999998777777 9999999 888 889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 002701 861 YGCCIRGEITKAFELRDDMMRR 882 (890)
Q Consensus 861 ~~~~~~g~~~~A~~~~~~m~~~ 882 (890)
..+.+.|+.++|.+-|....+.
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhh
Confidence 9999999999999999988753
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-13 Score=133.45 Aligned_cols=216 Identities=14% Similarity=0.119 Sum_probs=146.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 002701 656 KQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAEL 735 (890)
Q Consensus 656 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 735 (890)
-.|+.-.|.+.|+..++....++. .|..+..+|....+.++..+.|++..+.+ +.|..+|..-...+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 346666666777766665433322 26666666777777777777777777664 3355566666666666777888888
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002701 736 LCKEMLASGSLP-NQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGI 814 (890)
Q Consensus 736 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 814 (890)
-|++.++. .| +...|..+.-+..+.+.++++...|++..+.+|..+.+|+..+..+..++++++|.+.|+.+++ +
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--L 491 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--L 491 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--h
Confidence 88877754 33 4555666666666777888888888888777888888888888888888888888888887776 3
Q ss_pred CCC-------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 815 LPD-------C--ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDDMM 880 (890)
Q Consensus 815 ~p~-------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 880 (890)
.|+ . .+...++..- -.+++..|..+++++++ ++| ....|..|+..-.+.|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 443 1 1112222222 23777788888888877 777 55677777777788888888888887755
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-13 Score=142.96 Aligned_cols=132 Identities=17% Similarity=0.085 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCH--HHHH
Q 002701 713 NVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQIT---YGCFLDYLTREGKMEKAVQLHNAMLDGLLANT--VTYN 787 (890)
Q Consensus 713 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~ 787 (890)
+...+..++..+...|+.++|.+.+++.++. .||... ...........++.+.+.+.++..++..|.|+ ....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 6667777777788888888888888887765 233221 11111122334666777777777777666666 6667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 788 ILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 788 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
++++.+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.++|++.+.
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777433322456766666777777777777777777776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-12 Score=127.97 Aligned_cols=221 Identities=15% Similarity=0.163 Sum_probs=166.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002701 619 YCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEA 698 (890)
Q Consensus 619 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 698 (890)
+.-.|+.-.|..-|+..+...+.++ ..|..+...|....+.++.+..|.+..+.+ +.++.+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 4456778888888888887754433 236677777888888888888888888765 34555666666666677889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 002701 699 FRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDG 778 (890)
Q Consensus 699 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 778 (890)
..-|++.+... +.+...|..+.-+..+.++++++...|++.+++ ++.....|+.....+..++++++|.+.|+.+++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999888764 336667777777777888999999999998875 6667888898999999999999999999998874
Q ss_pred CCC------CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 779 LLA------NTVTYN--ILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 779 ~~~------~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
.|. ++..+. +++-.- -.+++..|.+++.++.+ +.|.. ..|.+|+....++|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333 333322 222222 23888999999999988 55554 7888999999999999999999998766
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=156.21 Aligned_cols=261 Identities=18% Similarity=0.186 Sum_probs=115.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002701 614 ALLHGYCKEGRLKDALGACREMVERG-VNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKA 692 (890)
Q Consensus 614 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 692 (890)
.+...+.+.|++++|++++.+..... .+.|...|..+.......++.+.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555556666666666665444333 2223333444444445566666666666666654322 44455555555 578
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002701 693 GNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASG-SLPNQITYGCFLDYLTREGKMEKAVQL 771 (890)
Q Consensus 693 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 771 (890)
+++++|..++....+. .++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776655 3566667778888899999999999999987542 345777888888999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 002701 772 HNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP 851 (890)
Q Consensus 772 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 851 (890)
++++++..|.|....+.+++.+...|+.+++.++++...... +.|...+..++.++...|+.++|+.++++..+ ..|
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p 245 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNP 245 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HST
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc--ccc
Confidence 999999889999999999999999999999999998887642 45667788999999999999999999999998 677
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 852 -DPLAYNFLIYGCCIRGEITKAFELRDDMMR 881 (890)
Q Consensus 852 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 881 (890)
|+.....+++++.+.|+.++|.+++.++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 788889999999999999999999888764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-12 Score=139.07 Aligned_cols=290 Identities=13% Similarity=0.088 Sum_probs=177.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHH-HHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHcCCChHHH
Q 002701 517 ANKLTEAIKWFDEMLERNVMPNEVT-YNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYR--SLITGLCSAGRVSEA 593 (890)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a 593 (890)
.|+++.|.+.+....+.. ++... |........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555543331 11122 222233335666666666666666553 22322111 224455566666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 002701 594 KEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDK 673 (890)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 673 (890)
...++.+.+..+ .++.....+...|.+.|++++|..++..+.+.+..++ .....+-.
T Consensus 173 l~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~~--------------------- 229 (398)
T PRK10747 173 RHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLEQ--------------------- 229 (398)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHHH---------------------
Confidence 666666655542 2455555566666666666666666666655533211 11110000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 002701 674 GLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYG 753 (890)
Q Consensus 674 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 753 (890)
.+|..++.......+.+...++++.+... .+.++.....+...+...|+.++|...+++..+. .|+....
T Consensus 230 ------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~- 299 (398)
T PRK10747 230 ------QAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV- 299 (398)
T ss_pred ------HHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH-
Confidence 01112222222333445555555555332 2346777788888888899999999999888864 4454322
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002701 754 CFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGY 833 (890)
Q Consensus 754 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 833 (890)
++.+....++.+++++..+...+..|.|+..+.+++..+.+.|++++|.+.|+++.+ ..|+..++..+...+.+.|+
T Consensus 300 -~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 300 -LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHK 376 (398)
T ss_pred -HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCC
Confidence 233334568888888888888888888888888888888888999999999988887 56888888888888888888
Q ss_pred HHHHHHHHHHHHh
Q 002701 834 LHEALKLWDSMLN 846 (890)
Q Consensus 834 ~~~A~~~~~~~~~ 846 (890)
.++|..++++.+.
T Consensus 377 ~~~A~~~~~~~l~ 389 (398)
T PRK10747 377 PEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.4e-12 Score=126.84 Aligned_cols=499 Identities=16% Similarity=0.080 Sum_probs=280.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 002701 363 NLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLIS 442 (890)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 442 (890)
+..-+..+.+-+....++.-|.-+-++....+..|+. ---+.++++-.|+++.|..++..-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 4455566666666677777777777777766544443 334677778788888887777655332 236667777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002701 443 GHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTE 522 (890)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 522 (890)
.+.+..++++|..++..... .-+...|-.-=. ...-..+.+. ++. ++......+-.-...|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHH
Confidence 78888888888877763210 001111000000 0000000000 000 000011111111223444455666
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002701 523 AIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGK-GLVADTYTYRSLITGLCSAGRVSEAKEFVDGLH 601 (890)
Q Consensus 523 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 601 (890)
|...+.+.+...+. ....+..++....-. ..+-..+++.+.-. -...+......+.........-+.....-.+..
T Consensus 160 ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s 236 (611)
T KOG1173|consen 160 ARDKYKEALLADAK-CFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES 236 (611)
T ss_pred HHHHHHHHHhcchh-hHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence 66666655543221 122222222221110 01111122110000 001112222222211100000001111111011
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 002701 602 REHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVI 681 (890)
Q Consensus 602 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 681 (890)
-.+...+........+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-+.+-.++.+. .+....+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~s 314 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALS 314 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcc
Confidence 11123355555566666777778888888888777763 345555666666777777777777777777765 2455667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002701 682 YTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTR 761 (890)
Q Consensus 682 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 761 (890)
|-++...|.-.|+..+|.++|.+....+ +.=...|......|.-.|..++|+..+...-+. ++-...-+..+.--|.+
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHH
Confidence 7777777777788888888887776543 112346777777888888888888877776553 22222223334445667
Q ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHH
Q 002701 762 EGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDN--GILP----DCITYSTIIYQYCKRGYLH 835 (890)
Q Consensus 762 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~ 835 (890)
.++++.|.+.|..+....|.|+..++-++-.....+.+.+|..+|+..+.. .+.+ ...+++.|+.+|.+.++++
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 788888888888888877888888888887777788888888888777631 0111 2345778888888888888
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002701 836 EALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFPS 887 (890)
Q Consensus 836 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 887 (890)
+|+..+++.+. ..| +..++..++-.|...|+.+.|++.|.+.+ ++.|+
T Consensus 473 eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~ 521 (611)
T KOG1173|consen 473 EAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPD 521 (611)
T ss_pred HHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCc
Confidence 88888888877 666 77777888888888888888888888777 44444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-12 Score=138.35 Aligned_cols=290 Identities=13% Similarity=0.021 Sum_probs=177.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 002701 587 AGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGL 666 (890)
Q Consensus 587 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 666 (890)
.|+++.|.+.+.+..+..+. +...+-.......+.|+.+.|...+.+..+..+.+...........+...|+++.|...
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 44444444444444333211 11222222344444455555555555444432222212222223444445555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCChhHHHHHHHHHHH
Q 002701 667 LKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYT----ALINGLCKAGYMDKAELLCKEMLA 742 (890)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~ 742 (890)
++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+.. +...+. ....++...+..+++.+.+.++.+
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55555443 234445555666666677777777777777666432 222221 111111233333444456666554
Q ss_pred CCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002701 743 SGS---LPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIH--GFCTMGKFEEATKLLGGMMDNGILPD 817 (890)
Q Consensus 743 ~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~p~ 817 (890)
... +.+...+..++..+...|+.++|.+.+++.++..|++......++. .....++.+.+++.+++..+. .|+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCC
Confidence 421 1377888889999999999999999999999977777643211222 334458889999999998874 444
Q ss_pred H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 818 C---ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMR 881 (890)
Q Consensus 818 ~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 881 (890)
. ....++++.+.+.|++++|.++|++.......|++..+.+++..+.+.|+.++|.+++++.+.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 566799999999999999999999533322789999999999999999999999999999753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-11 Score=119.90 Aligned_cols=355 Identities=10% Similarity=0.013 Sum_probs=198.9
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHHcC
Q 002701 476 ISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNE--VTYNVLIEGYCREG 553 (890)
Q Consensus 476 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g 553 (890)
...+-+.|..+.|+..|.+.+.. .+-....|..|..... +.+.+ ..+.. +.+.+. ..--.+..++-...
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~e~~----~~l~~-~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DIEIL----SILVV-GLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hHHHH----HHHHh-cCcccchHHHHHHHHHHHHHHH
Confidence 33444566677777777666543 2334444444433221 12211 11111 111111 11112334444555
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHH
Q 002701 554 CMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCK--LNEMCYSALLHGYCKEGRLKDALGA 631 (890)
Q Consensus 554 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 631 (890)
..+++++-.+.....|++.+...-+....+.-...++++|+.+|+++.+..+- .|..+|..++-. +..+-. +..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~sk--Ls~ 317 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSK--LSY 317 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHH--HHH
Confidence 67777777777777777766666666666666777888888888888776421 134444444322 222111 111
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 002701 632 CREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCV 711 (890)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 711 (890)
+.+-.-.--+--+.|+.++.+-|.-.++.++|+..|+...+.+ +.....|+.+..-|....+...|...|+..++.. +
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p 395 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-P 395 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-c
Confidence 1111111011233455566666666666666766666666653 2234456666666666667777777777776654 4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002701 712 PNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIH 791 (890)
Q Consensus 712 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 791 (890)
.|-..|-.+.++|.-.+...=|+-.|++.... .+.|...|.+|.++|.+.++.++|+..|..++.....+...+..|++
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 46667777777777777777777777777654 13366777777777777777777777777777643345566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 792 GFCTMGKFEEATKLLGGMMDN----GILPD--CITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 792 ~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
.|-+.++.++|...|++.++. |...+ ..+..-|..-+.+.+++++|..+......
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 777777777777777666541 22211 12223345555666667666666655544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-10 Score=117.99 Aligned_cols=430 Identities=14% Similarity=0.101 Sum_probs=245.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 002701 398 NVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLIS 477 (890)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 477 (890)
|...|..+.-++...|++..+.+.|++....-+ .....|+.+...|...|.-..|..+++........|+..+-..++.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 444555555555555555555555555543321 1334455555555555555555555555444332233332222222
Q ss_pred HHH--ccCCHHHHHHHHHHHhhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCChH
Q 002701 478 GYC--NEVKLNKAFRLYHEMTGK--GI--APNSYTFTALISGLCRA-----------NKLTEAIKWFDEMLERNVMPNEV 540 (890)
Q Consensus 478 ~~~--~~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~ 540 (890)
..| +.+.+++++..-.+.+.. +. ......|-.+.-+|... ....++++.+++.++.+. .|..
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TDPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CCch
Confidence 222 334444444444444331 00 11222333333333211 124467777777777652 2333
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002701 541 TYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYC 620 (890)
Q Consensus 541 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 620 (890)
....+.--|...++++.|.+..++..+.+...+...|..|.-.+...+++.+|+.+.+....... .|-.....-++.-.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhhhhhh
Confidence 33334445667788888888888888876666788888888888888888888888888776532 12222223334444
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC-HHH
Q 002701 621 KEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDK--GLRPDNVIYTSMIDAKGKAGN-LKE 697 (890)
Q Consensus 621 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~-~~~ 697 (890)
.-++.++|+.....+..- |...- +....++-....++...+.-. .......++..+.......+. ...
T Consensus 559 ~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred hcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 567777777766665542 00000 000111111111111111100 011111222222211111110 000
Q ss_pred HHHHHHHHHhCCC--CCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002701 698 AFRLWDIMIGEGC--VPN------VVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAV 769 (890)
Q Consensus 698 A~~~~~~~~~~~~--~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 769 (890)
... +...-. .|+ ...|......+.+.++.++|...+.+..+. .+.....|......+...|.+++|.
T Consensus 630 e~~----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 630 ELK----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred ccc----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHH
Confidence 000 111111 122 234556677788889999999888888754 2345667777777888999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 770 QLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATK--LLGGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
+.|..++...|.++.+..+++.++.+.|+..-|.+ ++..+.+. .| +...|-.++..+.+.|+.+.|.+.|....+
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999889999999999999999998887877 99999984 45 458999999999999999999999999887
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.1e-11 Score=117.39 Aligned_cols=368 Identities=12% Similarity=-0.000 Sum_probs=268.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHH--
Q 002701 499 GIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYT-- 576 (890)
Q Consensus 499 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-- 576 (890)
+...|...+-.....+-+.|....|++.|.+.+..- +..-..|..|.... .+.+.+. .... +.+.|...
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~----~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILS----ILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHH----HHHh-cCcccchHHH
Confidence 344455555555556778899999999998887652 33444555444432 2222222 2222 22222211
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHH
Q 002701 577 YRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVN--MDLVCYSVLIDGS 654 (890)
Q Consensus 577 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~ 654 (890)
=-.+..++-.....+++..-...+...|++.+...-+....+.-...+++.|+.+|+++.+..+- -|..+|+.++-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY-- 307 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY-- 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--
Confidence 12345566666788888888888888888877777777777778899999999999999988431 15556655542
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 002701 655 LKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAE 734 (890)
Q Consensus 655 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 734 (890)
.+..+. .+.++.+-.-.--+-.+.|...+.+.|+-.++.+.|..+|++.++.+ +.....|+.+.+-|....+...|+
T Consensus 308 v~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 308 VKNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence 222222 22222222221123445677788889999999999999999999875 335667899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002701 735 LLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGI 814 (890)
Q Consensus 735 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 814 (890)
+-++..++-+ +-|-..|..+..+|.-.+...=|+-.|+++.+-.|.|...|.+|+.+|.+.++.++|++-|+++...|-
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 9999999653 458899999999999999999999999999999999999999999999999999999999999998653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 815 LPDCITYSTIIYQYCKRGYLHEALKLWDSMLN----KGLKPDP--LAYNFLIYGCCIRGEITKAFELRDDMMRR 882 (890)
Q Consensus 815 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 882 (890)
. +...+..|+..|-+.++.++|..++++.++ .|...+. .+..-|..-+.+.+++++|..+.......
T Consensus 464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 3 558899999999999999999999999876 2333222 22233556678889999888877666543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-09 Score=112.00 Aligned_cols=571 Identities=13% Similarity=0.150 Sum_probs=302.5
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChhhHHH-----HHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHH
Q 002701 225 YIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNI-----LIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCT 299 (890)
Q Consensus 225 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 299 (890)
+-+..+++.|-+.|-+..|++.+..+... . .+++-+. .+-.|...-.++++.+.+..|...++..+.-+...
T Consensus 607 yDra~IAqLCEKAGL~qraLehytDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQ 683 (1666)
T KOG0985|consen 607 YDRAEIAQLCEKAGLLQRALEHYTDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQ 683 (1666)
T ss_pred ccHHHHHHHHHhcchHHHHHHhcccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34677888899999999999888877543 1 1111111 23456667788999999999999888888777777
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc------------
Q 002701 300 LVLGLCKVQEFEFGVWLMNEMIEL-----------GLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLG------------ 356 (890)
Q Consensus 300 ll~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------ 356 (890)
+..-|+.+=..+..+++|+..... ++..|+.+....|++-++.|++.+..++.++--
T Consensus 684 vatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLk 763 (1666)
T KOG0985|consen 684 VATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLK 763 (1666)
T ss_pred HHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHH
Confidence 777777766666777777765432 456788899999999999999998887765421
Q ss_pred ---------------cCCCCcCHHHHH------HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHH------------H
Q 002701 357 ---------------PLGVVPNLFVYN------ALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTY------------S 403 (890)
Q Consensus 357 ---------------~~~~~~~~~~~~------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~------------~ 403 (890)
+.++.+|.+.|- ..|..|.+.=++...-.+.-.+.+.++.-+ ..- .
T Consensus 764 eAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~-~ik~Li~~v~gq~~~d 842 (1666)
T KOG0985|consen 764 EAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSED-FIKNLILSVRGQFPVD 842 (1666)
T ss_pred hccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHH-HHHHHHHHHhccCChH
Confidence 112334443331 134455554444444444444443332211 111 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH-H---HHHHH------HHc----------
Q 002701 404 ILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAE-S---FFEEM------IHK---------- 463 (890)
Q Consensus 404 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~---~~~~~------~~~---------- 463 (890)
-|..-.-+.+++.--...++..+..|.. +..++|+|...|...++-.+-. + .++.. .++
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 2233344556666677777888888866 7888888887776544332211 0 00000 000
Q ss_pred -CCC--------CCHhHHHHHHHHHHccCCHHHH-----------HHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHH
Q 002701 464 -GLT--------PTVITYTSLISGYCNEVKLNKA-----------FRLYHEMTGKGIA--PNSYTFTALISGLCRANKLT 521 (890)
Q Consensus 464 -~~~--------p~~~~~~~li~~~~~~g~~~~A-----------~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~ 521 (890)
|.. .....|....+-+.+..+.+-= .++.++....+++ .|+...+.-+.++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 000 0001122222222222222211 1222333332221 23333444556666666666
Q ss_pred HHHHHHHHHHHCCCC--CChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 002701 522 EAIKWFDEMLERNVM--PNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDG 599 (890)
Q Consensus 522 ~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 599 (890)
+-++++++++-.+.. .+...-|.|+-...+ -+.....++.+++..-+. |+ +.......+-+++|..+|++
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkk 1073 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKK 1073 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHH
Confidence 666666666533211 111122222222222 233344444444433211 11 11223334445555555543
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 002701 600 LHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDN 679 (890)
Q Consensus 600 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 679 (890)
... +..+.+.|+.- -+.+++|.+.-++.- .+..|+.+..+-.+.+...+|++-|-+ ..|+
T Consensus 1074 f~~-----n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyik------adDp 1133 (1666)
T KOG0985|consen 1074 FDM-----NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDP 1133 (1666)
T ss_pred hcc-----cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCc
Confidence 321 23333333321 234444444433321 345566777777777777776665543 3455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002701 680 VIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYL 759 (890)
Q Consensus 680 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 759 (890)
..|..+++...+.|.+++-.+++....+..-.|.+. +.|+-+|++.++..+-.+++ ..||..-...+.+-|
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRC 1204 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHH
Confidence 667777777777777777777776666655455443 35666677777666554433 235655556666666
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------------------------HCCCC
Q 002701 760 TREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMM------------------------DNGIL 815 (890)
Q Consensus 760 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~ 815 (890)
...|.++.|.-+|..+. .|..|+..+...|++..|...-+++- -.++.
T Consensus 1205 f~~~~y~aAkl~y~~vS--------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~ii 1276 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNVS--------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNII 1276 (1666)
T ss_pred hhhhhhHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEE
Confidence 66666666666665433 24555555555555555544333321 11112
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 816 PDCITYSTIIYQYCKRGYLHEALKLWDSML 845 (890)
Q Consensus 816 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 845 (890)
....-+..|+.-|-..|-+++-+.+++..+
T Consensus 1277 vhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred EehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 223344556666666677776666666554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-12 Score=135.05 Aligned_cols=255 Identities=13% Similarity=0.033 Sum_probs=168.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002701 620 CKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAF 699 (890)
Q Consensus 620 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 699 (890)
.+.|+++.|...+.++.+..+.+...........+...|++++|...++++.+.. +.+......+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 4444455555555444443111111111122333444555555555555554443 333445555555666666666666
Q ss_pred HHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002701 700 RLWDIMIGEGCVPNV-------VTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLH 772 (890)
Q Consensus 700 ~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 772 (890)
.++..+.+.+..++. .+|..++.......+.+...++++...+. .+.+......+...+...|+.++|...+
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666655433211 12223333333344455566666665433 3457888889999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 002701 773 NAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD 852 (890)
Q Consensus 773 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 852 (890)
++.++ .++++... ++.+....++.+++++..++..+.. +-|...+..+++.+.+.|++++|.+.|+++++ ..|+
T Consensus 287 ~~~l~-~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~ 360 (398)
T PRK10747 287 LDGLK-RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPD 360 (398)
T ss_pred HHHHh-cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCC
Confidence 99998 56666433 3334445699999999999999752 33456788999999999999999999999999 8899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 853 PLAYNFLIYGCCIRGEITKAFELRDDMMRR 882 (890)
Q Consensus 853 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 882 (890)
...+..+...+.+.|+.++|.+++++.+..
T Consensus 361 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 361 AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999988753
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-08 Score=104.54 Aligned_cols=524 Identities=13% Similarity=0.107 Sum_probs=309.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhccC-CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 002701 329 EAAVSSLVEGFRRKGKIDDAFNLVNKLGPL-GVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILID 407 (890)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 407 (890)
+..+...+....++|++..-...|+.+... -+.-....|...+......|-++-+..+++...+- ++..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 345666677778889999999888887653 22223346777777778888888999999998875 3344667788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCC--HhHHHHHH
Q 002701 408 SLCRRGEMDIAVSFLGKMADEG------IKATIYPYNSLISGHCKLGNL---SAAESFFEEMIHKGLTPT--VITYTSLI 476 (890)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~p~--~~~~~~li 476 (890)
.+++.++.++|.+.+...+... .+.+...|..+-+...+.-+. -....+++.++.+ -+| ...|++|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 8889999999999888776431 233445666655555544332 2233444444433 334 35788889
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----------------C------CHHHHHHHHHHHHHCC
Q 002701 477 SGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRA----------------N------KLTEAIKWFDEMLERN 534 (890)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~~~~~~ 534 (890)
+-|.+.|.+++|..+|++.+.. ..++.-|..+.+.|..- + +++-....|+.+.+..
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999888765 22444444444444321 1 1222333344443331
Q ss_pred -----------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHcCCChHHHHHHH
Q 002701 535 -----------VMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVAD------TYTYRSLITGLCSAGRVSEAKEFV 597 (890)
Q Consensus 535 -----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~ 597 (890)
-+-++..|..-+. +..|+..+-...+.++.+. +.|. ...+..+...|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 0112333333222 2356677777777777664 2221 245667778888888888888888
Q ss_pred HHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------------CHHHHHHHHHHHHhc
Q 002701 598 DGLHREHCKLN---EMCYSALLHGYCKEGRLKDALGACREMVERGVNM-----------------DLVCYSVLIDGSLKQ 657 (890)
Q Consensus 598 ~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~li~~~~~~ 657 (890)
++..+..++.- ..+|..-..+-.+..+++.|+.+.+....-...| +...|+..++.--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 88877654432 2345555556666777888888777665321111 222344445544455
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH---hcCChhHH
Q 002701 658 SDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNV-VTYTALINGLC---KAGYMDKA 733 (890)
Q Consensus 658 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~---~~g~~~~A 733 (890)
|-++....+|+.+++..+.....+.|- ...+-...-++++.++|++-+..=..|++ ..|+..+.-+. ....++.|
T Consensus 491 gtfestk~vYdriidLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINY-AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 666666666777666543322222221 11222344467777777665544223433 23444333222 22357778
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 734 ELLCKEMLASGSLPNQITYGCFL--DYLTREGKMEKAVQLHNAMLDGLLAN--TVTYNILIHGFCTMGKFEEATKLLGGM 809 (890)
Q Consensus 734 ~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 809 (890)
..+|++.++ |.+|...-+..|+ ..-.+.|-...|..+++++..+.++. ...||..+.--...=-+.....+|+++
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 888888877 5555433322222 22345677777888888777654443 245666555443333344555677777
Q ss_pred HHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCC
Q 002701 810 MDNGILPDCI---TYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP--DPLAYNFLIYGCCIRGE 868 (890)
Q Consensus 810 ~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~ 868 (890)
++ .-|+.. ........-++.|..+.|..++....+. .+| +...|...=.-=.++|+
T Consensus 649 Ie--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 649 IE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 76 345542 2344556667778888888888777663 344 55666666666677787
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-11 Score=120.22 Aligned_cols=281 Identities=15% Similarity=0.115 Sum_probs=196.9
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002701 571 VADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVL 650 (890)
Q Consensus 571 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 650 (890)
..+........+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+-.++.+.. +....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3355566666667777788888888888887765 3455566666667777887777777777777763 3366777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 002701 651 IDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGE--GCVPNVVTYTALINGLCKAG 728 (890)
Q Consensus 651 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g 728 (890)
.--|...|+..+|.+.|.+....+. .=...|......|+-.|.-|+|...|....+. |.. -+..| +.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 7777777888888888877654321 11345677777777888888888888776654 211 12233 233466778
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHH
Q 002701 729 YMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLD-------GLLANTVTYNILIHGFCTMGKFEE 801 (890)
Q Consensus 729 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~ 801 (890)
+.+-|.++|.+.... .+.|+...+-+.-.....+.+.+|..+|+..+. ..+....+++.|+.++.+.+++++
T Consensus 395 n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 888888888888743 233666666666666677788888888887773 111245567888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002701 802 ATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIY 861 (890)
Q Consensus 802 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 861 (890)
|+..+++.+.. .+.+..++.+++-.|...|+++.|+..|.+.+. +.|+..+-..++.
T Consensus 474 AI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 474 AIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 88888888874 344668888888888888888888888888887 8887655555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-13 Score=138.33 Aligned_cols=282 Identities=14% Similarity=0.043 Sum_probs=156.1
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 002701 554 CMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHC--KLNEMCYSALLHGYCKEGRLKDALGA 631 (890)
Q Consensus 554 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 631 (890)
+..+|...|..+... +....++...+..+|...+++++|+++|+.+.+..+ -.+...|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 445666666664333 333445666666677777777777777776665532 11334444443322111 11111
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 002701 632 CREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCV 711 (890)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 711 (890)
+ -+.+.+. -+..+.+|..+..+|+-+++.+.|++.|++.++.+ +
T Consensus 409 L----------------------------------aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p 452 (638)
T KOG1126|consen 409 L----------------------------------AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-P 452 (638)
T ss_pred H----------------------------------HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-C
Confidence 1 1112222 13445566666666666666666666666666543 1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002701 712 PNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLP-NQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILI 790 (890)
Q Consensus 712 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 790 (890)
....+|+.+..-+.....+|.|...|...+. +.| +-.+|..+.-.|.++++++.|.-.|+++++..|.|.+....++
T Consensus 453 ~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g 530 (638)
T KOG1126|consen 453 RFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIG 530 (638)
T ss_pred ccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhh
Confidence 1455566665556666666666666666552 222 2234445555566666666666666666666666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 002701 791 HGFCTMGKFEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGE 868 (890)
Q Consensus 791 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 868 (890)
..+.+.|+.|+|+.+++++... .| |...--..+..+...+++++|+..++++.+ +.| +..++..++..|-+.|+
T Consensus 531 ~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 531 RIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHcc
Confidence 6666666666666666666652 22 333333445555666666666666666666 566 34555566666666666
Q ss_pred HHHHHHHHHHHHHC
Q 002701 869 ITKAFELRDDMMRR 882 (890)
Q Consensus 869 ~~~A~~~~~~m~~~ 882 (890)
.+.|+.-|--|.+.
T Consensus 607 ~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 607 TDLALLHFSWALDL 620 (638)
T ss_pred chHHHHhhHHHhcC
Confidence 66666666655543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-08 Score=103.93 Aligned_cols=584 Identities=11% Similarity=0.073 Sum_probs=290.0
Q ss_pred chHHHHHHHHHHhhcCC---CchhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 002701 135 PKEAFDSLFDCYEKFGF---SSSLGFDLLIQSYVQNKRVADGVFVFRLMRE-KHLMPEVRTLSGVLNGLVKIRQFGLVLK 210 (890)
Q Consensus 135 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 210 (890)
....++.+-+|+.+|-. .-+..|-.-.....++|++-.-..+|+++.. ..+......|-..+.-....+-.+.+..
T Consensus 80 T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~r 159 (835)
T KOG2047|consen 80 TDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIR 159 (835)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHH
Confidence 34455566666655532 3456777777778888998888889988854 3333455667777877777788888999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCC------CCCChhhHHHHHHHHHccCChhHHHH---H
Q 002701 211 LFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNG------SDLNVVVYNILIHGLCKSQRVFEAVE---V 281 (890)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~---~ 281 (890)
+|++-++.. +..-.--+..+++.++.++|.+.+...+... .+.+...|.-+-+...++-+.-..+. +
T Consensus 160 vyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdai 235 (835)
T KOG2047|consen 160 VYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAI 235 (835)
T ss_pred HHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHH
Confidence 999888654 2335566777888899999988888776431 12344455555555444433322222 2
Q ss_pred HHHHHHCCCCCCH--HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC
Q 002701 282 KNGFVKRGVKADV--VTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLG 359 (890)
Q Consensus 282 ~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 359 (890)
+..+... -+|. ..|++|..-|.+.|.+++|..++++.+..-. ....+..+-+.|..-..-.-+..+=-.....+
T Consensus 236 iR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~ 311 (835)
T KOG2047|consen 236 IRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESG 311 (835)
T ss_pred HHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 2222211 2333 3567777777777777777777777665422 22333344444432211111111000000001
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002701 360 VVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKG-----------LSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADE 428 (890)
Q Consensus 360 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 428 (890)
-+.+... ++-...-|+.+...+ -+-++.+|..-+.. ..|+..+-...+.+.++.
T Consensus 312 n~ed~~d-------------l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~ 376 (835)
T KOG2047|consen 312 NEEDDVD-------------LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT 376 (835)
T ss_pred Chhhhhh-------------HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc
Confidence 0111111 111112222222211 11133444433332 245666666666666554
Q ss_pred CCCCC------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 002701 429 GIKAT------IYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPT---VITYTSLISGYCNEVKLNKAFRLYHEMTGKG 499 (890)
Q Consensus 429 ~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 499 (890)
+.|. ...|..+...|-..|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|+++++.....
T Consensus 377 -vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v- 454 (835)
T KOG2047|consen 377 -VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV- 454 (835)
T ss_pred -cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-
Confidence 2221 13466666777777777777777777665533211 123333333334555666666666555432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 002701 500 IAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRS 579 (890)
Q Consensus 500 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 579 (890)
|.... ..+...+...++. ++ -+...|...++.--..|-++....+|+++.+..+. .+.....
T Consensus 455 --P~~~~-----~~~yd~~~pvQ~r-lh---------rSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~N 516 (835)
T KOG2047|consen 455 --PTNPE-----LEYYDNSEPVQAR-LH---------RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIIN 516 (835)
T ss_pred --CCchh-----hhhhcCCCcHHHH-HH---------HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 22211 1122222222111 11 13345555666655666777777777777666544 2322222
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002701 580 LITGLCSAGRVSEAKEFVDGLHREHCKLNE-MCYSALLHGYCK---EGRLKDALGACREMVERGVNMDLVCYSVLIDGSL 655 (890)
Q Consensus 580 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 655 (890)
....+-...-++++.+++++-+..-..|+. ..|+..+.-+.+ ..+++.|..+|++.++ |.+|...-+-.|+-+-.
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 233334444566666666655444333332 245544443332 2356666666666666 33332221111111100
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHH
Q 002701 656 KQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPN--VVTYTALINGLCKAGYMDKA 733 (890)
Q Consensus 656 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A 733 (890)
=-+-|....|+.++++.... +++. ...|+..|.--...=-+...
T Consensus 596 ---------------------------------EEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 596 ---------------------------------EEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred ---------------------------------HHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 01224444455555543322 1111 22344433322222223344
Q ss_pred HHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCC
Q 002701 734 ELLCKEMLASGSLPNQIT---YGCFLDYLTREGKMEKAVQLHNAMLDGLLA--NTVTYNILIHGFCTMGK 798 (890)
Q Consensus 734 ~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 798 (890)
..+|++.++. -||..+ ...+.+.-++.|..+.|..+|....+-.+| +...|++.=..-.+.|+
T Consensus 642 R~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 642 REIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 5555555543 344332 223344456677777777777777664333 44556666666666777
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-14 Score=147.90 Aligned_cols=260 Identities=17% Similarity=0.136 Sum_probs=93.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002701 581 ITGLCSAGRVSEAKEFVDGLHREH-CKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSD 659 (890)
Q Consensus 581 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 659 (890)
...+...|++++|.+++....... .+.+...|..+.......++++.|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444444555555555553332222 1223333444444444455555555555555544322 33334444433 45555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 002701 660 TRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEG-CVPNVVTYTALINGLCKAGYMDKAELLCK 738 (890)
Q Consensus 660 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 738 (890)
+++|.+++....+. .++...+...+..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|+..++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555544433 2344445555666667777777777777765432 23466667777777777788888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 002701 739 EMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC 818 (890)
Q Consensus 739 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 818 (890)
+.++.. +.|......++..+...|+.+++.+++....+..|.|+..+..++.++...|+.++|+.++++.... .+.|.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~ 248 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDP 248 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-H
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-ccccc
Confidence 777652 2246666777777777777777777777777655667777777788888888888888888887763 22355
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 819 ITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 819 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
.+...++.++...|+.++|..+.+++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 6667777888888888888777776654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.9e-13 Score=136.95 Aligned_cols=288 Identities=14% Similarity=0.112 Sum_probs=204.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHcCCChHHHHH
Q 002701 518 NKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGL--VADTYTYRSLITGLCSAGRVSEAKE 595 (890)
Q Consensus 518 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~ 595 (890)
-+..+|+..|.++.+. +.-.......+..+|...+++++|..+|+.+.+... .-+..+|.+.+.-+-+ .-+---
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHH
Confidence 3578999999996554 333456677788999999999999999999987631 2255677776654322 111122
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 002701 596 FVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGL 675 (890)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 675 (890)
+-+++.... +..+.+|.++.++|.-+++.+.|++.|++.++.++. ...+|+.+..-
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE---------------------- 464 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHE---------------------- 464 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCCh----------------------
Confidence 223334332 447778888888888888888888888887775221 34444444333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 002701 676 RPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCF 755 (890)
Q Consensus 676 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 755 (890)
+.....+|.|...|+..+... +.+..+|..+...|.+.++++.|+-.|++.++-+ +-+.+....+
T Consensus 465 -------------~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~ 529 (638)
T KOG1126|consen 465 -------------SIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHI 529 (638)
T ss_pred -------------hhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhh
Confidence 335566777777777766532 1233344555667888888888888888887542 2255555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 002701 756 LDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGYL 834 (890)
Q Consensus 756 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 834 (890)
...+.+.|+.++|+++++++....|.|+..-...+..+...+++++|+..++++++ +.|+. ..+..++..|.+.|+.
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccc
Confidence 67778888888888888888887888888888888888889999999999999988 56655 6777888999999999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 002701 835 HEALKLWDSMLNKGLKPD 852 (890)
Q Consensus 835 ~~A~~~~~~~~~~g~~p~ 852 (890)
+.|+.-|--+.+ ++|.
T Consensus 608 ~~Al~~f~~A~~--ldpk 623 (638)
T KOG1126|consen 608 DLALLHFSWALD--LDPK 623 (638)
T ss_pred hHHHHhhHHHhc--CCCc
Confidence 999998888888 6664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-10 Score=108.95 Aligned_cols=454 Identities=13% Similarity=0.087 Sum_probs=233.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCh
Q 002701 301 VLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKF 380 (890)
Q Consensus 301 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 380 (890)
+.-+....++..|+.+++.-...+-.-...+-.-++.++.+.|++++|...+.-+.+.. .++...+-.|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 33455566777777777665544333333444455677777888888888877776644 45555555566666666777
Q ss_pred hHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 002701 381 NEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEM 460 (890)
Q Consensus 381 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 460 (890)
.+|..+-....+ +.-.-..|.....+.++-++-..+.+.+.+. ...--+|.......-.+++|++++.+.
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 777766543322 3334445555556677766666666555432 122334445555556677888888887
Q ss_pred HHcCCCCCHhHHHHHH-HHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 002701 461 IHKGLTPTVITYTSLI-SGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNE 539 (890)
Q Consensus 461 ~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 539 (890)
+.. .|.-...|..+ -+|.+..-++-+.++++-.++. ++.++...|.......+.=.-..|.+-..++...+-. .
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~- 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E- 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c-
Confidence 765 34555555444 4455666677777777777665 3444444554443333322222223333333322110 0
Q ss_pred HHHHHHHHHHHHc-----CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002701 540 VTYNVLIEGYCRE-----GCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSA 614 (890)
Q Consensus 540 ~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 614 (890)
-..+.-+++. .+-+.|++++-.+.+. .| .+-..|+--|.+++++.+|..+..++.-. ++.-|-.
T Consensus 253 ---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~Eyil 321 (557)
T KOG3785|consen 253 ---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYIL 321 (557)
T ss_pred ---chhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHH
Confidence 1123333333 2346677776666543 22 22233444566777777777776655321 2222211
Q ss_pred HHHHHHhcC-------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002701 615 LLHGYCKEG-------RLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMID 687 (890)
Q Consensus 615 l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 687 (890)
-.-.+...| .+.-|...|...-..+..-|.+ |. -.++..
T Consensus 322 Kgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI-------------------------------pG---RQsmAs 367 (557)
T KOG3785|consen 322 KGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI-------------------------------PG---RQSMAS 367 (557)
T ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc-------------------------------cc---hHHHHH
Confidence 111122222 2233333333322222221111 11 112222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHH
Q 002701 688 AKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITY-GCFLDYLTREGKME 766 (890)
Q Consensus 688 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~ 766 (890)
++.-..++++.+-+++.+...-...|...+| +..+++..|++.+|+++|-++....++ |..+| ..+..+|.+.+..+
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 3333345566665555555443233444333 566677777777777777666533222 33333 44556667777777
Q ss_pred HHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002701 767 KAVQLHNAMLDGLLANTVT-YNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITY 821 (890)
Q Consensus 767 ~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 821 (890)
.|+.++-++- .|.+..+ +..++.-|.+++.+=-|.+.|+.+.. ..|++.-|
T Consensus 446 lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 446 LAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 7766554432 2222222 33344556677777677777776665 44555555
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.2e-11 Score=116.82 Aligned_cols=293 Identities=15% Similarity=0.104 Sum_probs=187.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 002701 517 ANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEF 596 (890)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 596 (890)
.|++..|.++..+-.+.+-.| ...|..-+.+.-..|+.+.|-.++.+..+..-.++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 456666666666555544221 2334444445555566666666666655542233334444445555556666666665
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 002701 597 VDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLR 676 (890)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 676 (890)
++++.+.++. ++.......++|.+.|++.....++..+.+.+.-.|...-.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 5555555432 44555555556666666666666666555554433222100
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002701 677 PDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFL 756 (890)
Q Consensus 677 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 756 (890)
.-..+|..+++-....+..+.-...++..... ...++..-.+++.-+.+.|+.++|.++.++.++++..|+..+ .
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~ 301 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----L 301 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----H
Confidence 01123444444444444444444556555443 233455566778888899999999999999998877776222 2
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002701 757 DYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHE 836 (890)
Q Consensus 757 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 836 (890)
-.+.+-++.+.=++..++.++..|.++-.+.+|+..|.+.+.|.+|.+.|+.... ..|+..+|..+.+++.+.|+..+
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHH
Confidence 2455778888888888888888888888899999999999999999999998877 57888999999999999999999
Q ss_pred HHHHHHHHHh
Q 002701 837 ALKLWDSMLN 846 (890)
Q Consensus 837 A~~~~~~~~~ 846 (890)
|.+..++.+.
T Consensus 380 A~~~r~e~L~ 389 (400)
T COG3071 380 AEQVRREALL 389 (400)
T ss_pred HHHHHHHHHH
Confidence 9998888765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-09 Score=105.11 Aligned_cols=404 Identities=14% Similarity=0.123 Sum_probs=205.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 002701 201 KIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVE 280 (890)
Q Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (890)
..+++..|..+++.-...+-+....+--.+..++.+.|++++|...+.-+.... .++...+-.|...++-.|.+.||..
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 345555555555554444322222334445555666666666666666655532 4455555555555556666666666
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCC
Q 002701 281 VKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGV 360 (890)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 360 (890)
+-.+..+ +.-.-..|...-.+.++-++-....+.+.+. .....+|.......-.+++|+.++.++...+
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn- 181 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN- 181 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 5444321 2222223333344555555544444444321 2334455555555667888888888877643
Q ss_pred CcCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 002701 361 VPNLFVYNAL-INSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNS 439 (890)
Q Consensus 361 ~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 439 (890)
|+....|.- .-+|.+..-++-+.++++-..+. ++.+..+.|..+....+.=+-..|..-..++.+++... --
T Consensus 182 -~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~ 254 (557)
T KOG3785|consen 182 -PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YP 254 (557)
T ss_pred -hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----ch
Confidence 555555553 34667788888888888877765 23345566666655555322233334444444432111 11
Q ss_pred HHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-
Q 002701 440 LISGHCKLG-----NLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISG- 513 (890)
Q Consensus 440 li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~- 513 (890)
.+.-+|+.+ .-+.|++++-.+.+. .|. +-..|+--|.+.+++++|..+.+++.- ..|-......+..+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHH
Confidence 233334432 346677776666544 222 233455556777888888877766532 12222222222211
Q ss_pred ----HHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCC
Q 002701 514 ----LCRANKLTEAIKWFDEMLERNVMPNE-VTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAG 588 (890)
Q Consensus 514 ----~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 588 (890)
........-|.+.|...-+++..-|. .---++...+.-..++++.+..+..+..- +..|...-..+.++.+..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhc
Confidence 11112244455555544444332222 22334555555556666666666665544 2223333334566666666
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHH
Q 002701 589 RVSEAKEFVDGLHREHCKLNEMCY-SALLHGYCKEGRLKDALGA 631 (890)
Q Consensus 589 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~ 631 (890)
++.+|+++|-.+....++ |..+| ..|.++|..+++.+.|..+
T Consensus 408 ny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred ChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHH
Confidence 666666666555443333 23333 3344556666666655444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-08 Score=109.25 Aligned_cols=660 Identities=10% Similarity=-0.004 Sum_probs=366.1
Q ss_pred hHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 002701 136 KEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDV 215 (890)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 215 (890)
...|..++++.+.-. .-..+|..|+..|..--+...|...|+++.+.... ++.++-.....+.+..+++.|..+.-..
T Consensus 475 ~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 475 ALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 344555555443221 34578889999998888999999999999887654 7778888999999999999999984444
Q ss_pred HHCCC-CCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH
Q 002701 216 VNVGI-LPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADV 294 (890)
Q Consensus 216 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 294 (890)
-+... ..-...|..+.-.|.+.+++.+|...|+...+.. +.|...|..++.+|-..|++..|+++|.+.... .|+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 33221 1112234445666778899999999999999875 347779999999999999999999999998764 4443
Q ss_pred H-hHHHHHHHHHccCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccC-------CC
Q 002701 295 V-TYCTLVLGLCKVQEFEFGVWLMNEMIEL------GLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPL-------GV 360 (890)
Q Consensus 295 ~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~ 360 (890)
. .-......-|-.|++.+|...++.++.. +...-..++..+...+...|-...|...+++.++. ..
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 2 2223334567889999999999988753 11122334444455555566666666666554321 11
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHcCCCCCh
Q 002701 361 VPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEM---D---IAVSFLGKMADEGIKATI 434 (890)
Q Consensus 361 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~ 434 (890)
..+...|-.+.+ |..+|-...- + .|+......+..-+-..+.. + -+.+.+-.-++ ...+.
T Consensus 710 ~~~~~~Wi~asd----------ac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~ 775 (1238)
T KOG1127|consen 710 QSDRLQWIVASD----------ACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHM 775 (1238)
T ss_pred hhhHHHHHHHhH----------HHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhcc
Confidence 122222322222 2233333221 1 23333322222222222222 1 11111111111 12234
Q ss_pred hhHHHHHHHHHh----c----CChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 002701 435 YPYNSLISGHCK----L----GNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYT 506 (890)
Q Consensus 435 ~~~~~li~~~~~----~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 506 (890)
.+|..++..|.+ . .+...|+..+.+.++..- .+..+|+.|.-. ...|++.-|.-.|-+-... .+.+..+
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~ 852 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQ 852 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhh
Confidence 555555544443 1 123467777877776532 266777777655 5557777777666555443 3446678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhh----CCCCCCHHHHHHHHH
Q 002701 507 FTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAG----KGLVADTYTYRSLIT 582 (890)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~~l~~ 582 (890)
|..+.-.+.+..+++-|...|....... +.+...|..........|+.-++..+|..-.. .|-.++..-+.....
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 8888888888999999999998887764 44667777666666778888888888876222 222333322222222
Q ss_pred HHHcCCChHHHHHHHH----------HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHH-
Q 002701 583 GLCSAGRVSEAKEFVD----------GLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVER-GVNMDLVCYSVL- 650 (890)
Q Consensus 583 ~~~~~g~~~~a~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l- 650 (890)
.....|+.++-+...+ ..... .+.+..+|.......-..+.+.+|.+...+.+.- ...-|...|+.+
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3345555554443333 22322 2335566666666666666666666666554321 001233344432
Q ss_pred ---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 002701 651 ---IDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGE-GCVPN-VVTYTALINGLC 725 (890)
Q Consensus 651 ---i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~ 725 (890)
...++..|.++.|..-+..... ..+..+...-+..+ -.++++++.+.|++.... ....+ ++....++-...
T Consensus 1011 ~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~lF-fkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g 1086 (1238)
T KOG1127|consen 1011 PDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTLF-FKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMG 1086 (1238)
T ss_pred hhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHHH-HHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHh
Confidence 2334455666644433221110 11111111112222 357788888888877654 11223 223333444445
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHH
Q 002701 726 KAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTY---NILIHGFCTMGKFEEA 802 (890)
Q Consensus 726 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A 802 (890)
..+.-+.|...+-+..... +|+..+...+...+.-..+-.......+++.+........| ...-..|.+.|+-...
T Consensus 1087 ~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~v 1165 (1238)
T KOG1127|consen 1087 LARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAV 1165 (1238)
T ss_pred hcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHH
Confidence 6677777777776666542 45554444444333333333333333333332110000011 1112245567777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH
Q 002701 803 TKLLGGMMDNGILPDCITYSTII 825 (890)
Q Consensus 803 ~~~~~~~~~~~~~p~~~~~~~l~ 825 (890)
.+.+++..-. .+-|...|..|-
T Consensus 1166 k~~~qr~~h~-~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1166 KKQIQRAVHS-NPGDPALWSLLS 1187 (1238)
T ss_pred HHHHHHHHhc-CCCChHHHHHHH
Confidence 7888877763 233445565543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-09 Score=111.53 Aligned_cols=453 Identities=13% Similarity=0.103 Sum_probs=232.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 002701 412 RGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRL 491 (890)
Q Consensus 412 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 491 (890)
.+++...+++.+.+++. .+--..+.....-.++..|+.++|.......+...+. +.+.|..+.-.+-...++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 34455555555555442 1112222222233334445555555555555444332 444555555555555555555555
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCC-C
Q 002701 492 YHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKG-L 570 (890)
Q Consensus 492 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 570 (890)
|...+..+ +.|...+.-+.-.-.+.++++........+.+.. +.....|..++-++.-.|+...|..++++..+.. .
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55555432 2234444444444444555555555554444432 2234455555555555566666666655555443 1
Q ss_pred CCCHHHHHHHH------HHHHcCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 002701 571 VADTYTYRSLI------TGLCSAGRVSEAKEFVDGLHREHCKLNEMC-YSALLHGYCKEGRLKDALGACREMVERGVNMD 643 (890)
Q Consensus 571 ~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 643 (890)
.|+...+.... ....+.|..++|.+.+...... ..|... --.-...+.+.+++++|..++..++.+ .||
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 23333332221 2233445555555544433322 112111 122334556666666666666666665 344
Q ss_pred HHHHHHHHHHHH-hcCChHHHH-HHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 002701 644 LVCYSVLIDGSL-KQSDTRRYF-GLLKEMHDKG---LRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYT 718 (890)
Q Consensus 644 ~~~~~~li~~~~-~~~~~~~A~-~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 718 (890)
...|......+. +-.+.-+++ .+|....+.- ..|-....+. .....-.+....++..+.+.|+++- +.
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~vdkyL~~~l~Kg~p~v---f~ 324 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEIVDKYLRPLLSKGVPSV---FK 324 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHHHHHHHHHHhhcCCCch---hh
Confidence 444444333322 222233333 3444333321 1111111111 1112222333445555666665432 22
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 002701 719 ALINGLCKAGYMDKAELLCKEMLA----SG----------SLPNQITY--GCFLDYLTREGKMEKAVQLHNAMLDGLLAN 782 (890)
Q Consensus 719 ~l~~~~~~~g~~~~A~~~~~~~~~----~~----------~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 782 (890)
.+...|-.-...+--.++...+.. .| -+|....| ..++..+-+.|+++.|....+.++...|.-
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl 404 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL 404 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH
Confidence 222222111111111111111111 00 14554444 456677888999999999999999877777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C----HHHH
Q 002701 783 TVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP--D----PLAY 856 (890)
Q Consensus 783 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~----~~~~ 856 (890)
+.-|..-++.+...|.+++|...+++..+.. .||...-..-+.-..+.++.++|.++.......|... + ...|
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmW 483 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMW 483 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHH
Confidence 7888888899999999999999999998753 3455444466777788899999999998888766522 1 1345
Q ss_pred HHHH--HHHHhcCCHHHHHHHHHHHH
Q 002701 857 NFLI--YGCCIRGEITKAFELRDDMM 880 (890)
Q Consensus 857 ~~l~--~~~~~~g~~~~A~~~~~~m~ 880 (890)
..+- .+|.+.|++..|++=|..+-
T Consensus 484 f~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 484 FQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 4443 45888999988887766554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-07 Score=103.04 Aligned_cols=453 Identities=15% Similarity=0.158 Sum_probs=240.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH-HHH--------HHHHHH-HcCCC---------
Q 002701 371 INSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDI-AVS--------FLGKMA-DEGIK--------- 431 (890)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~--------~~~~~~-~~~~~--------- 431 (890)
..-.-+.++..--...++...+.|.. |..+++.|...|...++-.+ -++ ...+.- ++++.
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerG 923 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERG 923 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeeccc
Confidence 34445566666667777888888876 88899988887776543222 111 011111 11000
Q ss_pred ----------CChhhHHHHHHHHHhcCChhHH-----------HHHHHHHHHcCC--CCCHhHHHHHHHHHHccCCHHHH
Q 002701 432 ----------ATIYPYNSLISGHCKLGNLSAA-----------ESFFEEMIHKGL--TPTVITYTSLISGYCNEVKLNKA 488 (890)
Q Consensus 432 ----------~~~~~~~~li~~~~~~g~~~~A-----------~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A 488 (890)
.....|....+.+.+..+.+-= ..+.++....++ ..|...-+.-+.++...+-..+-
T Consensus 924 qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eL 1003 (1666)
T KOG0985|consen 924 QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNEL 1003 (1666)
T ss_pred CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHH
Confidence 0011223333333333332211 233344443332 12344455667778888888889
Q ss_pred HHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHh
Q 002701 489 FRLYHEMTGKG--IAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMA 566 (890)
Q Consensus 489 ~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 566 (890)
+++++++.-.. +.-+...-+.|+-...+ -+.....+..+++-.-+ .|+ +.......+-+++|+.+|++..
T Consensus 1004 IELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 1004 IELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred HHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhc
Confidence 99999887542 22233333444444444 34455666666665443 222 2334445566777777776643
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 002701 567 GKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVC 646 (890)
Q Consensus 567 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 646 (890)
. +..+...|+. .-++++.|.++-++.. .+..|..+..+-.+.|.+.+|++-|-+. -|+..
T Consensus 1076 ~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~ 1135 (1666)
T KOG0985|consen 1076 M-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSN 1135 (1666)
T ss_pred c-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHH
Confidence 2 3444444433 2355566655544432 3456777777777777777776665432 25666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 002701 647 YSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCK 726 (890)
Q Consensus 647 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 726 (890)
|.-+++...+.|.+++-..++....+..-+|... +.+|-+|++.+++.+-..+.. .||......+.+-|..
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFE 1206 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhh
Confidence 7777777777777777777776666655454433 345666667666655443321 2555555555555555
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------------------------hc-CCCC
Q 002701 727 AGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAM------------------------LD-GLLA 781 (890)
Q Consensus 727 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------------~~-~~~~ 781 (890)
.|.++.|.-+|.... -|..|...+...|+++.|...-+++ -. .+.-
T Consensus 1207 ~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iiv 1277 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIV 1277 (1666)
T ss_pred hhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEE
Confidence 565555555544332 2333333344444444443332222 11 1222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002701 782 NTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLI 860 (890)
Q Consensus 782 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 860 (890)
...-+..|+.-|...|-++|-+.+++..+- +.- ..-.++-|+-.|.+- ++++-.+.++-.-.+ ...-.++
T Consensus 1278 hadeLeeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMgmfTELaiLYsky-kp~km~EHl~LFwsR------vNipKvi 1348 (1666)
T KOG0985|consen 1278 HADELEELIEYYQDRGYFEELISLLEAGLG--LERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR------VNIPKVI 1348 (1666)
T ss_pred ehHhHHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh------cchHHHH
Confidence 333456677778888888888887777653 322 223445555445443 344444444433321 1122467
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 002701 861 YGCCIRGEITKAFELRDDM 879 (890)
Q Consensus 861 ~~~~~~g~~~~A~~~~~~m 879 (890)
+++-+.--|.+..-+|.+-
T Consensus 1349 RA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1349 RAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 7777777788877766553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-08 Score=105.47 Aligned_cols=382 Identities=15% Similarity=0.120 Sum_probs=228.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 002701 161 IQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDF 240 (890)
Q Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (890)
|+.|.+.|.+..|...-..= ..+..+....-.+..++.+..-|+.|-.+|+++... .-.+.+|-+-.-+
T Consensus 622 iqlyika~~p~~a~~~a~n~--~~l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgdaf 690 (1636)
T KOG3616|consen 622 IQLYIKAGKPAKAARAALND--EELLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHcCCchHHHHhhcCH--HHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccHH
Confidence 44556666655555432111 111234444555555666666666666666665421 1122222232334
Q ss_pred hhHHHHHHHHHhCCCCCChhhH-HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 002701 241 VKAKEMIHFMDSNGSDLNVVVY-NILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNE 319 (890)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 319 (890)
.+|.++-+-. ++..+++. ..+..-+.+.|+++.|+..|-+... ....+.+......+.+|+.+++.
T Consensus 691 ~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildn 757 (1636)
T KOG3616|consen 691 GKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDN 757 (1636)
T ss_pred HHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHH
Confidence 4444444332 22233333 3455566778888888887755432 23345556677888999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH
Q 002701 320 MIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNV 399 (890)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 399 (890)
+.+.+. ...-|..+..-|...|+++-|.++|-+.- .++..|..|.+.|+++.|.++-++... .....
T Consensus 758 iqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~ 824 (1636)
T KOG3616|consen 758 IQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATI 824 (1636)
T ss_pred hhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHH
Confidence 876542 22346777889999999999999997654 356788899999999999998766543 34456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 002701 400 VTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGY 479 (890)
Q Consensus 400 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 479 (890)
..|..-..-+-+.|++.+|.+++-.+.. | ...|.+|-+.|..+..+++.++-... .-..|...+..-+
T Consensus 825 ~~yiakaedldehgkf~eaeqlyiti~~----p-----~~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~ 892 (1636)
T KOG3616|consen 825 SLYIAKAEDLDEHGKFAEAEQLYITIGE----P-----DKAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKEL 892 (1636)
T ss_pred HHHHHhHHhHHhhcchhhhhheeEEccC----c-----hHHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHH
Confidence 6777777778888999998887743321 2 23577888888888888877654321 1234556667777
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------------HHHCCCCCChH-------
Q 002701 480 CNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDE------------MLERNVMPNEV------- 540 (890)
Q Consensus 480 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------------~~~~~~~~~~~------- 540 (890)
-..|++..|...|-+..+ |.+.+++|-..+.+++|.++-+. |-.+.+..+..
T Consensus 893 e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 893 EAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred HhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhh
Confidence 788888888877654332 44555566666666666555432 11111111110
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 002701 541 -TYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHRE 603 (890)
Q Consensus 541 -~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 603 (890)
....-++..+..+.++-|+++-+-..+.. .|. +...+...+-..|++++|.+.+-+.++.
T Consensus 964 gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 964 GLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 11223344455666777776665554432 222 2334455567788999988877777665
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-10 Score=109.84 Aligned_cols=263 Identities=17% Similarity=0.136 Sum_probs=146.7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Q 002701 299 TLVLGLCKVQEFEFGVWLMNEMIELGLVPS---EAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLC 375 (890)
Q Consensus 299 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 375 (890)
+|.+.|-+.|..+.|+.+++.+.++...+. ..+...|+.-|...|-+|.|.++|..+.+.+ .--..+.-.|+..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHH
Confidence 333444444444444444444443322111 1245566777777777777777777776533 122334556777777
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 002701 376 KERKFNEAEFLFNEMKQKGLSPNVV----TYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLS 451 (890)
Q Consensus 376 ~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 451 (890)
+..+|++|+++-+++.+.|..+..+ -|--|...+....+++.|..++.+..+.+.+ .+.+-..+.+.+...|+++
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~ 231 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQ 231 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchH
Confidence 7888888888877777765444322 2333444444556677777777777665432 4445555666666777777
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 452 AAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEML 531 (890)
Q Consensus 452 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 531 (890)
.|.+.++...+.++.--..+...|..+|.+.|+.++....+..+.+.. ++...-..+...-....-.+.|...+.+-+
T Consensus 232 ~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 232 KAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 777777777666433334455566666666777777666666666542 223333333333333444555555555544
Q ss_pred HCCCCCChHHHHHHHHHHHH---cCChHHHHHHHHHHhh
Q 002701 532 ERNVMPNEVTYNVLIEGYCR---EGCMVKAFELLDEMAG 567 (890)
Q Consensus 532 ~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 567 (890)
.+ .|+...+..+|+.... .|...+.+.++++|+.
T Consensus 310 ~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 310 RR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred hh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44 4666666666665543 2334444445555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-08 Score=104.09 Aligned_cols=454 Identities=15% Similarity=0.133 Sum_probs=269.3
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 002701 305 CKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAE 384 (890)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 384 (890)
+..+.|...++..+.+++ +.+-...+....+-.+...|+.++|....+...+.+ ..+.+.|.++.-.+-...++++|+
T Consensus 18 yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHH
Confidence 345666777777777766 344445566666666777788888888877776644 466778888887777788888888
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 002701 385 FLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKG 464 (890)
Q Consensus 385 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 464 (890)
+.|......+.. |...+.-+.---.+.++++.....-.+..+.. +.....|..+..++.-.|++..|..++++..+..
T Consensus 96 Kcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888876432 55566655555566677777777766666652 2244567777777777888888888888777653
Q ss_pred -CCCCHhHHHHHH------HHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002701 465 -LTPTVITYTSLI------SGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMP 537 (890)
Q Consensus 465 -~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 537 (890)
..|+...+.... ....+.|.+++|.+.+..-... +......-..-...+.+.+++++|..++..++.++ |
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--P 250 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--P 250 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--c
Confidence 235554444332 2334667777777776654332 22122222344556778888888888888888874 4
Q ss_pred ChHHHHH-HHHHHHHcCChHHHH-HHHHHHhhCCCCCCHHHHHHH-HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002701 538 NEVTYNV-LIEGYCREGCMVKAF-ELLDEMAGKGLVADTYTYRSL-ITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSA 614 (890)
Q Consensus 538 ~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 614 (890)
|...|.- +..++.+-.+.-++. .+|....+. ++ -......+ +.......-.+...+++....+.|+++ ++..
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~-r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~d 325 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YP-RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKD 325 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Cc-ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhh
Confidence 5544444 444444444444444 555555443 11 11111111 111111122233345566666666543 2222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH--------cC----------CCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCC
Q 002701 615 LLHGYCKEGRLKDALGACREMVE--------RG----------VNMDLVCYS--VLIDGSLKQSDTRRYFGLLKEMHDKG 674 (890)
Q Consensus 615 l~~~~~~~g~~~~A~~~~~~~~~--------~~----------~~~~~~~~~--~li~~~~~~~~~~~A~~~~~~~~~~~ 674 (890)
+...|-.-...+ +.+++.. .| -+|....|. .++..+-..|+++.|..+++..+.+
T Consensus 326 l~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH- 400 (700)
T KOG1156|consen 326 LRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH- 400 (700)
T ss_pred hHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-
Confidence 222222111111 1111110 00 144444444 4566677889999999998888765
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--C---
Q 002701 675 LRPDN-VIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLP--N--- 748 (890)
Q Consensus 675 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~--- 748 (890)
.|+. ..|..-...+...|++++|..++++..+.+ .||...=.--+.-..++++.++|.++.....+.|..- |
T Consensus 401 -TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~ 478 (700)
T KOG1156|consen 401 -TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAE 478 (700)
T ss_pred -CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHH
Confidence 4443 345555567788899999999999888775 4555443344555668888999999888888776410 1
Q ss_pred -HHHHHHH--HHHHHhcCCHHHHHHHHHHHhc
Q 002701 749 -QITYGCF--LDYLTREGKMEKAVQLHNAMLD 777 (890)
Q Consensus 749 -~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 777 (890)
.-.|..+ ..+|.++|++..|+.-|..+-+
T Consensus 479 mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 479 MQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 1122222 3557778888777766665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-07 Score=104.08 Aligned_cols=661 Identities=10% Similarity=-0.041 Sum_probs=322.7
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 002701 170 VADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHF 249 (890)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 249 (890)
...|+..|-+..+..+. =...|..|...|...-+...|.+.|+.+.+.+ ..|...+-.....|.+..+.+.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55666666555444322 23345566666666566666777777776665 56666666777777777777777666222
Q ss_pred HHhCCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 002701 250 MDSNGSD-LNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPS 328 (890)
Q Consensus 250 ~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 328 (890)
.-+.... .-...|-...-.|-+.++...|+.-|+...+. -+.|...|..++.+|.+.|++..|.++|.......+ .+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~-dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP-~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT-DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP-LS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC-CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc-Hh
Confidence 2211100 00111222222345666666666666666553 233555666666667777777777766666554321 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhccCC-----CCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-------CCC
Q 002701 329 EAAVSSLVEGFRRKGKIDDAFNLVNKLGPLG-----VVP-NLFVYNALINSLCKERKFNEAEFLFNEMKQ-------KGL 395 (890)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~ 395 (890)
..........-+..|++.+|+..++.+.... .+. -..++-.+...+.-.|-..+|...++.-.+ ...
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 2233333444456666666666665554310 000 001111111111122222222222222211 110
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh---h---HHHHHHHHHHHcCCCCCH
Q 002701 396 SPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNL---S---AAESFFEEMIHKGLTPTV 469 (890)
Q Consensus 396 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~p~~ 469 (890)
..+...|..+. .|..+|-... .+ .|+......+..-..+.+.. + -|.+.+-.-+.. ..+.
T Consensus 710 ~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~ 775 (1238)
T KOG1127|consen 710 QSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHM 775 (1238)
T ss_pred hhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhcc
Confidence 11111121111 1122222211 00 11211111111111111211 1 011111111111 1133
Q ss_pred hHHHHHHHHHHc------c--CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH
Q 002701 470 ITYTSLISGYCN------E--VKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVT 541 (890)
Q Consensus 470 ~~~~~li~~~~~------~--g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 541 (890)
.+|..++..|.+ . .+...|+..+.+.++. ...+..+|++|.-. ...|++.-|.--|-+-.... +-+..+
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~ 852 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQ 852 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhh
Confidence 445555444332 1 1224677777776654 23356667766544 55566766666665544433 335677
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH--HH--cCCCCCHHHHHHHHH
Q 002701 542 YNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGL--HR--EHCKLNEMCYSALLH 617 (890)
Q Consensus 542 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~--~~~~~~~~~~~~l~~ 617 (890)
|..+.-.+.+..+++.|...|.......+ .+...+..........|+.-++..+|..- .. .|--+....|.....
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 87787788888888888888888776522 24444444444444667766676666542 11 121222222322223
Q ss_pred HHHhcCChHHHHHHHHH----------HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHH--
Q 002701 618 GYCKEGRLKDALGACRE----------MVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDK-GLRPDNVIYTS-- 684 (890)
Q Consensus 618 ~~~~~g~~~~A~~~~~~----------~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~-- 684 (890)
....+|+.++-+..-+. .... .+.+...|.......-+.+.++.|.++..+++.. ..+.+...|+.
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 33445554444333332 2222 3335566666666666677777777766665421 11233344443
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHH
Q 002701 685 --MIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLAS-GSLPNQ-ITYGCFLDYLT 760 (890)
Q Consensus 685 --li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~l~~~~~ 760 (890)
....++..|.++.|...+...... .+......-+.. .-.|+++++.+.|++.+.- +-..+. +....++-+..
T Consensus 1011 ~~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g 1086 (1238)
T KOG1127|consen 1011 PDAGRLELSLGEFESAKKASWKEWME---VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMG 1086 (1238)
T ss_pred hhhhhhhhhhcchhhHhhhhcccchh---HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHh
Confidence 223444556666555444322211 111111111222 3458889999999988753 112232 33344455566
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHH-HHHHHhcCCHHHH
Q 002701 761 REGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITY--STI-IYQYCKRGYLHEA 837 (890)
Q Consensus 761 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l-~~~~~~~g~~~~A 837 (890)
..+.-+.|...+-+.....+++..+..+|.-.+.-..+-.....+.+++... +.-....| ..+ =..+.+.|+-.-.
T Consensus 1087 ~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll~e~i~~~~~r~~~v 1165 (1238)
T KOG1127|consen 1087 LARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLLKELIYALQGRSVAV 1165 (1238)
T ss_pred hcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHHHHHHHHHhhhhHHH
Confidence 7788888888888888877888877777766665544444444444444321 00000111 011 1234566777788
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHH
Q 002701 838 LKLWDSMLNKGLKP-DPLAYNFLI 860 (890)
Q Consensus 838 ~~~~~~~~~~g~~p-~~~~~~~l~ 860 (890)
.+.+.+.+- ..| |+..|..|-
T Consensus 1166 k~~~qr~~h--~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1166 KKQIQRAVH--SNPGDPALWSLLS 1187 (1238)
T ss_pred HHHHHHHHh--cCCCChHHHHHHH
Confidence 888888887 677 677776554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-10 Score=106.96 Aligned_cols=289 Identities=16% Similarity=0.131 Sum_probs=182.6
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChhH
Q 002701 376 KERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKA---TIYPYNSLISGHCKLGNLSA 452 (890)
Q Consensus 376 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 452 (890)
-.++.++|.++|-+|.+... -+..+.-+|.+-|-+.|..|.|+.++..+.+...-+ ...+...|..-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 35677888888888887522 134466677777888888888888888777641111 01344556677777888888
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 002701 453 AESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNS----YTFTALISGLCRANKLTEAIKWFD 528 (890)
Q Consensus 453 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~ 528 (890)
|..+|..+.+.|.. -..+.-.|+..|-...++++|++.-+++.+.+-.+.. .-|.-|...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 88888877765322 3445667777777788888888887777766433332 224445555556677778888887
Q ss_pred HHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 002701 529 EMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLN 608 (890)
Q Consensus 529 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 608 (890)
+..+.+. -.+..--.+.+.....|++++|.+.++...+.+..--..+...|..+|...|+.++...++..+.+... .
T Consensus 205 kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g 281 (389)
T COG2956 205 KALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G 281 (389)
T ss_pred HHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence 7777642 233444455677777888888888888877775554456677777778888888888877777776543 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHH
Q 002701 609 EMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQ---SDTRRYFGLLKEMH 671 (890)
Q Consensus 609 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~~~ 671 (890)
...-..+.+......-.+.|.....+-+.+ +|+...+..++...... |...+.+..++.|.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 333334444433444455555555554444 56777777777655432 33344444555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.5e-10 Score=109.76 Aligned_cols=286 Identities=10% Similarity=0.058 Sum_probs=185.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002701 272 SQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNL 351 (890)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 351 (890)
.|++..|.+...+-.+.+-. ....|..-..+--+.|+.+.+-.++.+..+....++..+.....+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 45666666665555444322 23344444455556666666666666666654455556666666667777777777777
Q ss_pred HHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 352 VNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNV-------VTYSILIDSLCRRGEMDIAVSFLGK 424 (890)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 424 (890)
++++.+.+ +.+..........|.+.|++.+...++..|.+.|.--+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77766655 455666777777777888888888888888777655443 2455555555544444444445555
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 002701 425 MADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNS 504 (890)
Q Consensus 425 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 504 (890)
.... .+.++..-.+++.-+.+.|+.++|.++..+..+++..|.. ...-.+.+-++.+.-++..++-.+. .+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 4433 3335556666777777888888888888888777666551 1222344666777666666666655 33345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhh
Q 002701 505 YTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAG 567 (890)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 567 (890)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+.+++.+.|+..+|.++.++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 67777888888888888888888866664 57788888888888888888888887777653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-07 Score=95.39 Aligned_cols=468 Identities=16% Similarity=0.131 Sum_probs=232.1
Q ss_pred HhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHH-------HhCC
Q 002701 112 LVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLM-------REKH 184 (890)
Q Consensus 112 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~ 184 (890)
-...|+|..|..+|+.+. .+|+....+..+.+.--..+ -..+--++|.-.|++.+|..+.+.. ++.|
T Consensus 454 aid~~df~ra~afles~~-~~~da~amw~~laelale~~-----nl~iaercfaai~dvak~r~lhd~~eiadeas~~~g 527 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESLE-MGPDAEAMWIRLAELALEAG-----NLFIAERCFAAIGDVAKARFLHDILEIADEASIEIG 527 (1636)
T ss_pred ccccCchHHHHHHHHhhc-cCccHHHHHHHHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhC
Confidence 445678888888777643 34444433333322111111 0111224555555555555443322 1222
Q ss_pred CC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChh-hH
Q 002701 185 LM-PEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVV-VY 262 (890)
Q Consensus 185 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~ 262 (890)
-. .+..-.-.++ ..-.++|.+|..+|-+--. --..+.+|-...++++|+.+-+-. | .|... .-
T Consensus 528 gdgt~fykvra~l--ail~kkfk~ae~ifleqn~---------te~aigmy~~lhkwde~i~lae~~---~-~p~~eklk 592 (1636)
T KOG3616|consen 528 GDGTDFYKVRAML--AILEKKFKEAEMIFLEQNA---------TEEAIGMYQELHKWDEAIALAEAK---G-HPALEKLK 592 (1636)
T ss_pred CCCchHHHHHHHH--HHHHhhhhHHHHHHHhccc---------HHHHHHHHHHHHhHHHHHHHHHhc---C-ChHHHHHH
Confidence 11 1111112222 2223456666666643211 112344555556666666554321 2 12221 22
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002701 263 NILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRK 342 (890)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 342 (890)
...++++...|+-+.|-++-.. +.. -...|..|.+.|....|...-.. +..+..|......+..++.+.
T Consensus 593 ~sy~q~l~dt~qd~ka~elk~s--------dgd-~laaiqlyika~~p~~a~~~a~n--~~~l~~de~il~~ia~alik~ 661 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELKES--------DGD-GLAAIQLYIKAGKPAKAARAALN--DEELLADEEILEHIAAALIKG 661 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhccc--------cCc-cHHHHHHHHHcCCchHHHHhhcC--HHHhhccHHHHHHHHHHHHhh
Confidence 3344555556665555443111 111 12334556666666655543211 111234555666666666666
Q ss_pred CCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHhcCCHHHHHHH
Q 002701 343 GKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYS-ILIDSLCRRGEMDIAVSF 421 (890)
Q Consensus 343 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~ 421 (890)
.-++.|-.+|+++.. +...+.+|-+..-+.+|.++-+-. ++..+++.. .-...+...|+++.|+..
T Consensus 662 elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainh 728 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINH 728 (1636)
T ss_pred HHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHH
Confidence 666677666666653 112233333333344444443221 111222211 112334445666666655
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 002701 422 LGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIA 501 (890)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 501 (890)
|-+... ....+.+-....++..|+.+++.+..... -..-|..+...|...|+++.|.++|.+.-
T Consensus 729 fiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----- 792 (1636)
T KOG3616|consen 729 FIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----- 792 (1636)
T ss_pred HHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----
Confidence 543211 12234455566777777777777765521 22345566677777888888887776531
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 002701 502 PNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLI 581 (890)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 581 (890)
.++..|.+|.+.|++++|.++-++... .......|..-..-+-+.|++.+|.++|-.+.. |+ ..|
T Consensus 793 ----~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~ai 857 (1636)
T KOG3616|consen 793 ----LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAI 857 (1636)
T ss_pred ----hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHH
Confidence 245667777888888888777665532 233345555555666677777777777644321 22 235
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 002701 582 TGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTR 661 (890)
Q Consensus 582 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 661 (890)
..|-+.|..+..+.+..+-... .-..+...+..-|-..|++..|...|-+..+ |.+-++.|-..+-++
T Consensus 858 qmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~ 925 (1636)
T KOG3616|consen 858 QMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWE 925 (1636)
T ss_pred HHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHH
Confidence 5667777777666665543322 2233445556666667777777666544332 334444555555555
Q ss_pred HHHHHH
Q 002701 662 RYFGLL 667 (890)
Q Consensus 662 ~A~~~~ 667 (890)
+|.++-
T Consensus 926 dayria 931 (1636)
T KOG3616|consen 926 DAYRIA 931 (1636)
T ss_pred HHHHHH
Confidence 554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.1e-08 Score=103.74 Aligned_cols=241 Identities=16% Similarity=0.121 Sum_probs=144.9
Q ss_pred ChhhHHHHHH--HHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc-C-------CCC
Q 002701 258 NVVVYNILIH--GLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIEL-G-------LVP 327 (890)
Q Consensus 258 ~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~-------~~~ 327 (890)
|..|-..+++ .|...|+.++|++-.+-+.. ...|..+...|.+.++++-|.-.+..|... | ...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4555555554 35566777777776665543 356667777777777777666666655422 1 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 002701 328 SEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILID 407 (890)
Q Consensus 328 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 407 (890)
+...-......-...|.+++|..+|++..+ |..|=..|-..|.+++|.++-+.--+..+ ..||..-..
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 112223333344567888888888888775 34444566677888888887664333211 246666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH----------cCC---------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 002701 408 SLCRRGEMDIAVSFLGKMAD----------EGI---------KATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPT 468 (890)
Q Consensus 408 ~~~~~g~~~~A~~~~~~~~~----------~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 468 (890)
-+-..++.+.|++.|++... ..+ ..|...|......+-..|+.+.|+.++....
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~------- 939 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK------- 939 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-------
Confidence 66667888888888775321 110 1133344444445555677777777776544
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 469 VITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEML 531 (890)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 531 (890)
-|-.+++..|-.|+.++|-++-++- -|......|.+.|-..|++.+|...|-+..
T Consensus 940 --D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 --DYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred --hhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2455666677777777777766542 244555667777777777777777776543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.7e-08 Score=99.82 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=107.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 002701 659 DTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWD--------IMIGEGCVPNVVTYTALINGLCKAGYM 730 (890)
Q Consensus 659 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~ 730 (890)
.+.++.+++....+........+...++......|+++.|.+++. .+.+.+..|..+ .++...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCC
Confidence 577788888877766444445666777788889999999999998 666655556554 4456667788887
Q ss_pred hHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002701 731 DKAELLCKEMLAS--GSLPNQI----TYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATK 804 (890)
Q Consensus 731 ~~A~~~~~~~~~~--~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 804 (890)
+.|..++.+.+.. ...+... ++.-++..-.+.|+-++|..+++++.+-.|++..+...++.+|+.. +.+.|..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 7788887776542 1112222 3333344456789999999999999998999999999999999865 6777877
Q ss_pred HHHHHH
Q 002701 805 LLGGMM 810 (890)
Q Consensus 805 ~~~~~~ 810 (890)
+-+.+.
T Consensus 513 l~k~L~ 518 (652)
T KOG2376|consen 513 LSKKLP 518 (652)
T ss_pred HhhcCC
Confidence 766553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.6e-07 Score=96.74 Aligned_cols=566 Identities=13% Similarity=0.085 Sum_probs=288.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCCHHHHHHHHHHH
Q 002701 163 SYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVG--------ILPDIYIHSAVMRSL 234 (890)
Q Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~ 234 (890)
.|+--|+.+.|.+-.+.++ +...|..+.+.|.+.++.|-|.-.+..|.... ...+..+-.-+.-.-
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 3566788888887776654 44568888888888888888877766664321 011111111222223
Q ss_pred HccCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHH
Q 002701 235 CELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGV 314 (890)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 314 (890)
.+.|.+++|+.++++..+. ..|=..|-.+|.+++|+++-+.-.+-. =..||..-..-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 4568889999999888754 233345667899999988766533221 1346666666666678888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 002701 315 WLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKG 394 (890)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 394 (890)
++|+..-.. -..+...|. .+...-.++.+++ .|...|.--...+-..|+.+.|+..|....+
T Consensus 879 eyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 879 EYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 887653211 111111110 0111111222222 1223333344444556777777777765443
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHH
Q 002701 395 LSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTS 474 (890)
Q Consensus 395 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 474 (890)
|-+++...|-.|+.++|-.+-++- -|..+...+...|-..|++.+|..+|.+... +..
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsn 998 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSN 998 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHH
Confidence 445666666777777777665542 1445556667777777777777777765542 222
Q ss_pred HHHHHHccCCHH----------------HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------H
Q 002701 475 LISGYCNEVKLN----------------KAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDE--------M 530 (890)
Q Consensus 475 li~~~~~~g~~~----------------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~ 530 (890)
-|+. |+.++++ .|-+.|++.- . -+...+..|-+.|.+.+|+++-=+ +
T Consensus 999 AIRl-cKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 999 AIRL-CKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHH-HHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 2222 2223322 2333333321 0 011223345556666665554211 1
Q ss_pred HHCCC--CCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCC
Q 002701 531 LERNV--MPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREH-CKL 607 (890)
Q Consensus 531 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 607 (890)
+..++ ..|+...+.-.+.++...++++|..++-...+. ...+ .+|+..++.-..++-+.|.-.. -.|
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Al-qlC~~~nv~vtee~aE~mTp~Kd~~~ 1139 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGAL-QLCKNRNVRVTEEFAELMTPTKDDMP 1139 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHH-HHHhcCCCchhHHHHHhcCcCcCCCc
Confidence 22222 235666777778888888888888887665442 1112 3455555554445444442211 122
Q ss_pred CH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH-------------HHHH
Q 002701 608 NE----MCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGL-------------LKEM 670 (890)
Q Consensus 608 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~-------------~~~~ 670 (890)
+. .....+...+.++|.+..|-+-|.+.-.+ -..+.++.+.|+.++..-+ -+-+
T Consensus 1140 ~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyL 1210 (1416)
T KOG3617|consen 1140 NEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYL 1210 (1416)
T ss_pred cHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhh
Confidence 22 23445566777888888887777665432 2234555666665542110 1111
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 002701 671 HDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQI 750 (890)
Q Consensus 671 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 750 (890)
+..+...++.+...++..|.+..-++.-...|...... .+..|...-.+ .|-.++|-..+.+...++ ....
T Consensus 1211 QtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~--~~~t 1281 (1416)
T KOG3617|consen 1211 QTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDKA---MGALEEAAKCLLKAEQKN--MSTT 1281 (1416)
T ss_pred hhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhHH---hHHHHHHHHHHHHHHhhc--chHH
Confidence 22334455555555555555544444443344333221 11112111111 133444555554444332 1111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHH
Q 002701 751 TYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCT-MGKFEEATKLLGGMMDNGILPDC----ITYSTII 825 (890)
Q Consensus 751 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~ 825 (890)
.++.|-.-. .-+-..+..... ..+..+.+.-...|.+....||. ..|..|+
T Consensus 1282 ~l~~Lq~~~------------------------a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~li 1337 (1416)
T KOG3617|consen 1282 GLDALQEDL------------------------AKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLI 1337 (1416)
T ss_pred HHHHHHHHH------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHH
Confidence 111111100 001111111110 12444555555566655444443 4567777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 002701 826 YQYCKRGYLHEALKLWDSMLNK 847 (890)
Q Consensus 826 ~~~~~~g~~~~A~~~~~~~~~~ 847 (890)
..+....++..|-+.+++|..+
T Consensus 1338 e~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1338 EDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHhhhhccHHHHHHHHHhhc
Confidence 8888888888888888888773
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-08 Score=96.48 Aligned_cols=275 Identities=12% Similarity=0.019 Sum_probs=172.0
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002701 570 LVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSV 649 (890)
Q Consensus 570 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 649 (890)
++.+......+...+...|+.++|+..|++....++. +........-.+...|+.++...+...+..... -....|-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhh
Confidence 3344555556666666666666666666655544211 122222223334455555555555554443310 12222333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 002701 650 LIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGY 729 (890)
Q Consensus 650 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 729 (890)
-.......++++.|+.+-.+.++.+ +-+...+..-...+...++.++|.-.|+...... +-+..+|..|+..|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 3333445566666666666665543 2233344444455567788888888887776652 3367788888888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHH-HHH-HhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002701 730 MDKAELLCKEMLASGSLPNQITYGCFL-DYL-TREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLG 807 (890)
Q Consensus 730 ~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 807 (890)
+.+|.-+-+...+. ++.+..+...+. ..| ....--++|..++++.++..|.-..+.+.++..+...|+.++++.+++
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 88887777766653 334444544442 222 223345778888888888777777778888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 002701 808 GMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDP 853 (890)
Q Consensus 808 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 853 (890)
+.+. ..||....+.|++.+...+.+.+|+..|..++. +.|+.
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 8876 568888888888888888888888888888887 77743
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.2e-10 Score=111.91 Aligned_cols=200 Identities=16% Similarity=0.117 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002701 679 NVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDY 758 (890)
Q Consensus 679 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 758 (890)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4556666777778888888888888877653 3356677777888888888888888888888653 3455667777788
Q ss_pred HHhcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002701 759 LTREGKMEKAVQLHNAMLD--GLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHE 836 (890)
Q Consensus 759 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 836 (890)
+...|++++|...++.+++ ..+.....+..++..+...|++++|.+.+++..+.. +.+...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887 234455677778888888999999999999888742 2245677888888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 837 ALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRR 882 (890)
Q Consensus 837 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 882 (890)
|..+++++++. .+++...+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999988874 2235667777778888889999998888877643
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.7e-08 Score=99.37 Aligned_cols=218 Identities=11% Similarity=0.039 Sum_probs=109.5
Q ss_pred HHHHHHccCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC
Q 002701 230 VMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQE 309 (890)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 309 (890)
=++.+...|++++|.+...+++..+ +-+...+..-+-++.+.++|++|+.+.+.-... ..+.+-+..=..+.++.++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 3444556666666666666666654 234445555555666667777776544332210 1111111122334446777
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCc-CHHHHHHHHHHHHhcCChhHHHHHH
Q 002701 310 FEFGVWLMNEMIELGLVP-SEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVP-NLFVYNALINSLCKERKFNEAEFLF 387 (890)
Q Consensus 310 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 387 (890)
.++|+..++ |..+ +..+...-.+.+.+.|++++|+.+|+.+.+.+.+. +...-..++..- .+...
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~- 161 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQV- 161 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhH-
Confidence 777777666 2222 33355555667777777777777777776544221 111111111110 01111
Q ss_pred HHHHHCCCCcCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHcC-------CCCCh-------hhHHHHHHHHHhcCCh
Q 002701 388 NEMKQKGLSPNVVTYSILI---DSLCRRGEMDIAVSFLGKMADEG-------IKATI-------YPYNSLISGHCKLGNL 450 (890)
Q Consensus 388 ~~m~~~g~~p~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~-------~~~~~li~~~~~~g~~ 450 (890)
..|......| ..+|..+. ..+...|++.+|+++++...+.+ -.-+. .+--.|.-.+...|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1122222233 23444443 34445788888888887773211 01000 1112233445567888
Q ss_pred hHHHHHHHHHHHcC
Q 002701 451 SAAESFFEEMIHKG 464 (890)
Q Consensus 451 ~~A~~~~~~~~~~~ 464 (890)
++|..++...+...
T Consensus 241 ~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888887777765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-10 Score=127.31 Aligned_cols=258 Identities=12% Similarity=0.014 Sum_probs=171.2
Q ss_pred CchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 002701 117 LFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQ--SYVQNKRVADGVFVFRLMREKHLMPEVRTLSG 194 (890)
Q Consensus 117 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 194 (890)
.+++|..++++++..+|........+-.+|. .+.. .+...+++++|...++++.+..+. +..++..
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~-----------~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~ 343 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYL-----------SMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGL 343 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-----------HHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHH
Confidence 4678888888888887766554433333221 1111 122456688888888888877655 6677777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 002701 195 VLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQR 274 (890)
Q Consensus 195 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 274 (890)
+...+...|++++|...|+++++.+ +.+..++..++.++...|++++|...+++.++..+. +...+..++..+...|+
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~ 421 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTG 421 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccC
Confidence 7778888888999999999888887 666778888888888889999999999988887432 22233444555667888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 275 VFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNK 354 (890)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 354 (890)
+++|+..++++.+...+-+...+..+...+...|++++|...+..+.... +.+......+...|+..|+ .|...+++
T Consensus 422 ~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--~a~~~l~~ 498 (553)
T PRK12370 422 IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNSE--RALPTIRE 498 (553)
T ss_pred HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccHH--HHHHHHHH
Confidence 88898888888765322234456667777778899999998888865442 2244456666677777774 66666666
Q ss_pred hccCC-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 002701 355 LGPLG-VVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKG 394 (890)
Q Consensus 355 ~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 394 (890)
+.+.. ..+....+ +-..+.-.|+-+.+..+ +++.+.|
T Consensus 499 ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 499 FLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 54421 11222223 33334445666666555 7777653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-10 Score=125.71 Aligned_cols=182 Identities=9% Similarity=-0.018 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH---------hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 002701 170 VADGVFVFRLMREKHLMPEVRTLSGVLNGLV---------KIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDF 240 (890)
Q Consensus 170 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (890)
+++|+..|+++.+..+. +..++..+..++. ..+++++|...++++++.+ +.+..++..+..++...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 45666677766655433 3334444443332 1233566666666666665 55566666666666666666
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHccCChHHHHHHHHH
Q 002701 241 VKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADV-VTYCTLVLGLCKVQEFEFGVWLMNE 319 (890)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~A~~~~~~ 319 (890)
++|...|++.++.+ +.+...+..+...+...|++++|+..+++..+.. |+. ..+..++..+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 66666666666653 2234455566666666666666666666666543 221 1222233334445556666666655
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 002701 320 MIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLG 356 (890)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 356 (890)
..+...+.++..+..++.+|...|++++|...++++.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 5544322233444555555555555555555555543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.5e-08 Score=94.07 Aligned_cols=290 Identities=15% Similarity=0.019 Sum_probs=218.6
Q ss_pred HcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHH
Q 002701 585 CSAGRVSEAKEFVDGLHRE-HCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVC-YSVLIDGSLKQSDTRR 662 (890)
Q Consensus 585 ~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~ 662 (890)
+-.++...|...+-.+... ..+.|......+.+.+...|+.++|+..|++.... .|+.++ .....-.+.+.|+.++
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 4445555555544444333 34567888999999999999999999999998765 333222 2222223456788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002701 663 YFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLA 742 (890)
Q Consensus 663 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 742 (890)
...+...+.... ......|-.-........+++.|+.+-++.+..+ +.++..|..-...+...|++++|.-.|...+.
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 777777665432 1122222222333346788999999999888764 33556666566788899999999999999885
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH-H
Q 002701 743 SGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILI-HGFC-TMGKFEEATKLLGGMMDNGILPDC-I 819 (890)
Q Consensus 743 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~-~ 819 (890)
.. +-+...|..|+.+|...|.+.+|..+-+...+..+.+..++..++ ..+. ...--++|.+++++.+. +.|+. .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~ 439 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTP 439 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHH
Confidence 41 347889999999999999999999999999998888988888774 4433 33446899999999887 67876 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002701 820 TYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRG 883 (890)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 883 (890)
..+.+...+...|..++++.++++.+. ..||......|++.+...+.+++|.+.|..+++..
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 667788889999999999999999998 88999999999999999999999999999888543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-09 Score=109.81 Aligned_cols=198 Identities=14% Similarity=0.040 Sum_probs=143.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002701 646 CYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLC 725 (890)
Q Consensus 646 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 725 (890)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444444555555555555555554432 2234555566666777788888888887777654 335566777777888
Q ss_pred hcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002701 726 KAGYMDKAELLCKEMLASGSL-PNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATK 804 (890)
Q Consensus 726 ~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 804 (890)
..|++++|...+++..+.... .....+..+..++...|++++|...+.++++..|.+...+..++..+...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888888764222 2345666677888889999999999999888777778888889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 805 LLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 805 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
.++++.+. .+++...+..++..+...|+.++|..+.+.+..
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99998875 334556677778888889999999998888765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-10 Score=106.90 Aligned_cols=237 Identities=12% Similarity=0.011 Sum_probs=194.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002701 643 DLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALIN 722 (890)
Q Consensus 643 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 722 (890)
|-..-+.+..+|.+.|-+.+|...++...+. .|-+.||..|-.+|.+..+++.|+.++.+-++. ++-|+.....+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3344466778889999999999998888776 567778888889999999999999999888876 2335555566778
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002701 723 GLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEA 802 (890)
Q Consensus 723 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 802 (890)
.+...++.++|.++++..++.. +.++....++...|.-.++.+.|+..|+.+++.-..++..|+.++-+|.-.+++|-+
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 8888999999999999998752 456667777777888889999999999999994456788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 803 TKLLGGMMDNGILPDC--ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDDM 879 (890)
Q Consensus 803 ~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 879 (890)
+.-|++++..--.|+. .+|..+.......||+..|.+.|+-.+. -+| ....++.|+-.-.+.|+.++|..+++.+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999999876444554 7888999999999999999999998887 455 5688889888889999999999999987
Q ss_pred HHCCCCCC
Q 002701 880 MRRGIFPS 887 (890)
Q Consensus 880 ~~~g~~p~ 887 (890)
.. +.|+
T Consensus 456 ~s--~~P~ 461 (478)
T KOG1129|consen 456 KS--VMPD 461 (478)
T ss_pred hh--hCcc
Confidence 73 4454
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-08 Score=104.58 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=76.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCC
Q 002701 336 VEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPN-VVTYSILIDSLCRRGE 414 (890)
Q Consensus 336 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 414 (890)
+++.+..|+++.|...|-+.+... ++|.+.|..-..+|.+.|++++|++--.+-.+. .|+ ...|+-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 345567788888888888877766 457788888888888888888888766655553 555 3578888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 002701 415 MDIAVSFLGKMADEGIKATIYPYNSLISGH 444 (890)
Q Consensus 415 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 444 (890)
+++|+..|.+-++... .|...++.+..++
T Consensus 86 ~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDP-SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcCC-chHHHHHhHHHhh
Confidence 8888888888777632 2556666666665
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-09 Score=98.28 Aligned_cols=195 Identities=16% Similarity=0.140 Sum_probs=145.9
Q ss_pred HHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 002701 105 FCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLMREKH 184 (890)
Q Consensus 105 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 184 (890)
|...+..|.+..+|.+|..++..-....|. +......|+.+|....+|..|.+.|+++....
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~------------------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~ 74 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR------------------SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH 74 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334556778889999999998887766652 23456778999999999999999999987654
Q ss_pred CCCCHhhHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChhh
Q 002701 185 LMPEVRTLS-GVLNGLVKIRQFGLVLKLFEDVVNVGILPDIY--IHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVV 261 (890)
Q Consensus 185 ~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 261 (890)
+ ...-|- --.+++.+.+.+..|+.+...|... ++.. +.-.-.......+++..+..+.++....| +..+
T Consensus 75 P--~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~ 146 (459)
T KOG4340|consen 75 P--ELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADG 146 (459)
T ss_pred h--HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccch
Confidence 3 333222 2456789999999999999888653 2222 22222334556799999999998887543 6667
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 002701 262 YNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLV 326 (890)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 326 (890)
.+.......+.|++++|++-|+...+.+.-.....|+..+ +..+.|+++.|++...+++++|+.
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 7777888899999999999999999876555566776655 455779999999999999988754
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.3e-08 Score=104.00 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=39.9
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 826 YQYCKRG-YLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDD 878 (890)
Q Consensus 826 ~~~~~~g-~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 878 (890)
.-+.+.. =.++|.++++-+.+ ..| +..+|..-...|.+.|++--|++.+.+
T Consensus 464 ekL~~t~dPLe~A~kfl~pL~~--~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 464 EKLLKTEDPLEEAMKFLKPLLE--LAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHhcCCcHHHHHHHHHHHHHH--hCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 3344444 37889999999998 566 667888888999999999999887764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-10 Score=106.27 Aligned_cols=239 Identities=13% Similarity=0.020 Sum_probs=177.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002701 573 DTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLID 652 (890)
Q Consensus 573 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 652 (890)
|-+.-+.+..+|.+.|-+.+|.+.++...+. .+-+.+|..|...|.+..+...|+.++.+-.+. .+-|+....-+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 4444567788888888888888888887776 345667777888888888888888888887776 2224444444556
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 002701 653 GSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDK 732 (890)
Q Consensus 653 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 732 (890)
.+...++.++|.++++...+.. +.+.....++...|.-.++++-|..+|+++++.|. .+...|+.+.-+|.-.+++|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhh
Confidence 6777778888888888877653 34555556666677778888888888888888874 477778887777778888888
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 733 AELLCKEMLASGSLPN--QITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMM 810 (890)
Q Consensus 733 A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 810 (890)
++.-|++.+..--.|+ ..+|..+.......||+.-|.+.|+-.+...+.+...+|.|+-.-.+.|++++|..++..+.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 8888888876543444 34566676667778888888888888888778888888888888888888888888888877
Q ss_pred HCCCCCCH
Q 002701 811 DNGILPDC 818 (890)
Q Consensus 811 ~~~~~p~~ 818 (890)
. ..|+.
T Consensus 457 s--~~P~m 462 (478)
T KOG1129|consen 457 S--VMPDM 462 (478)
T ss_pred h--hCccc
Confidence 6 34543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.7e-10 Score=100.88 Aligned_cols=197 Identities=15% Similarity=0.070 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002701 680 VIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYL 759 (890)
Q Consensus 680 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 759 (890)
.+...+.-.|...|+...|..-+++.++.+ +.+..+|..+...|.+.|..+.|.+.|++.++.. +.+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 345666777888888888888888888775 3466778888888888888888888888888652 34567777888888
Q ss_pred HhcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 002701 760 TREGKMEKAVQLHNAMLD--GLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGYLHE 836 (890)
Q Consensus 760 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 836 (890)
|..|.+++|...|+.++. .++.-..+|..++.+..+.|+.+.|.+.|++.++. .|+. .+...+.....+.|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchH
Confidence 888888888888888887 56666677888888888888888888888888874 4433 666778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 837 ALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMR 881 (890)
Q Consensus 837 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 881 (890)
|..+++.....+- +...+....++.--..|+.+.|-++=..+.+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888888877543 6777777777777778888877776665554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-09 Score=113.38 Aligned_cols=197 Identities=21% Similarity=0.196 Sum_probs=139.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CCCHH
Q 002701 684 SMIDAKGKAGNLKEAFRLWDIMIGE-----GC-VP-NVVTYTALINGLCKAGYMDKAELLCKEMLAS-----GS-LPNQI 750 (890)
Q Consensus 684 ~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~~ 750 (890)
.+...|...+++++|..+|+++... |- .| -..+++.|..+|.+.|++++|...+++..+- +. .|...
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 3555667777777777777776643 21 11 2345666777788888888877777765531 11 22222
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHhc--C--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--C
Q 002701 751 -TYGCFLDYLTREGKMEKAVQLHNAMLD--G--LLA----NTVTYNILIHGFCTMGKFEEATKLLGGMMDN----GI--L 815 (890)
Q Consensus 751 -~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~ 815 (890)
.++.++..++..+.+++|..+++..++ . ..+ -..+++.|+..|.+.|++++|.+++++++.. +- .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 345566777888889998888887776 1 222 2457889999999999999999999998753 11 2
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 816 PD-CITYSTIIYQYCKRGYLHEALKLWDSMLN--KGLKP---D-PLAYNFLIYGCCIRGEITKAFELRDDMM 880 (890)
Q Consensus 816 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 880 (890)
+. ...++.|...|.+.+++.+|.++|.+... +-+.| + ..+|..|+..|.+.|++++|.++.+.+.
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 36678899999999999999999988654 11223 2 3678999999999999999999999887
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.3e-09 Score=110.00 Aligned_cols=236 Identities=20% Similarity=0.233 Sum_probs=164.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHC-----C--CC
Q 002701 611 CYSALLHGYCKEGRLKDALGACREMVER-----G-VNMDLVC-YSVLIDGSLKQSDTRRYFGLLKEMHDK-----G--LR 676 (890)
Q Consensus 611 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~-----~--~~ 676 (890)
+...+...|...|+++.|..+++..++. | ..|.+.+ .+.+...|...+++.+|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344566666666666666666655543 1 1222222 233556677778888888887777642 2 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHC---CCC
Q 002701 677 PDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGE-----GC-VPNVV-TYTALINGLCKAGYMDKAELLCKEMLAS---GSL 746 (890)
Q Consensus 677 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 746 (890)
.-..+++.|..+|.+.|++++|..+++...+. |. .|.+. .++.++..++..+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 22346677777888999999888887766542 21 22322 3556777888999999999999877643 122
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-C-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 002701 747 PN----QITYGCFLDYLTREGKMEKAVQLHNAMLD-G-------LLANTVTYNILIHGFCTMGKFEEATKLLGGMMD--- 811 (890)
Q Consensus 747 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 811 (890)
++ ..+++.+...|.+.|++++|.++|++++. . .......++.|+..|.+.+++++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 45788999999999999999999999886 1 122245678899999999999999999988753
Q ss_pred -CCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 812 -NGI-LPDC-ITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 812 -~~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
.|. .|+. .+|..|+..|...|++++|.++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 2344 7899999999999999999999998763
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-08 Score=106.19 Aligned_cols=294 Identities=15% Similarity=0.095 Sum_probs=165.5
Q ss_pred HHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---
Q 002701 546 IEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKE--- 622 (890)
Q Consensus 546 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 622 (890)
...+...|++++|++.+..-... +.............+.+.|+.++|..++..+++.++. +...|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence 34556677777777777664443 3323344555566667777777777777777776532 444445554444222
Q ss_pred --CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002701 623 --GRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFR 700 (890)
Q Consensus 623 --g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 700 (890)
...+....+++++....+..+. ...+.-.+.....+. ..+..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~--~~rl~L~~~~g~~F~----------------------------------~~~~~ 132 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDA--PRRLPLDFLEGDEFK----------------------------------ERLDE 132 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccc--hhHhhcccCCHHHHH----------------------------------HHHHH
Confidence 2345555556655554322111 111111111101111 12222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--------------CCCCCH--HHHHHHHHHHHhcCC
Q 002701 701 LWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLAS--------------GSLPNQ--ITYGCFLDYLTREGK 764 (890)
Q Consensus 701 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~p~~--~~~~~l~~~~~~~g~ 764 (890)
++..+...|++ + ++..+-..|....+.+-..+++..+... .-+|.. .++..+...|...|+
T Consensus 133 yl~~~l~KgvP-s--lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~ 209 (517)
T PF12569_consen 133 YLRPQLRKGVP-S--LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD 209 (517)
T ss_pred HHHHHHhcCCc-h--HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCC
Confidence 33344444422 2 2233333333333333333333333221 112333 244556677778888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 765 MEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSM 844 (890)
Q Consensus 765 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 844 (890)
+++|++..+++++..|..+..|..-++.|-+.|++.+|.+.++.+..... -|..+-+..+..+.+.|+.++|.+++...
T Consensus 210 ~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 210 YEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 88888888888887777788888888888888888888888888877432 25555566677778888888888888887
Q ss_pred HhCCCCC--CH----HHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 845 LNKGLKP--DP----LAYN--FLIYGCCIRGEITKAFELRDDMMR 881 (890)
Q Consensus 845 ~~~g~~p--~~----~~~~--~l~~~~~~~g~~~~A~~~~~~m~~ 881 (890)
...+..| |. ..|. ..+.+|.+.|++..|++-|..+.+
T Consensus 289 tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 289 TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7765555 22 2343 334568888888888877776653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-11 Score=85.55 Aligned_cols=50 Identities=46% Similarity=0.761 Sum_probs=37.0
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 002701 257 LNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCK 306 (890)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 306 (890)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+.++.+||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57777777777777777777777777777777777777777777777764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-11 Score=84.85 Aligned_cols=50 Identities=50% Similarity=0.974 Sum_probs=42.9
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 002701 362 PNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCR 411 (890)
Q Consensus 362 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 411 (890)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888874
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.4e-09 Score=106.48 Aligned_cols=196 Identities=10% Similarity=-0.108 Sum_probs=130.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002701 155 LGFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSL 234 (890)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (890)
..|..++..|...|+.++|...|.++....+. +..+|+.+...+...|++++|...|+++++.. +.+..++..++.++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45677888888899999999999888877654 67788888888889999999999999998876 56677888888888
Q ss_pred HccCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHH
Q 002701 235 CELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGV 314 (890)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 314 (890)
...|++++|.+.|+...+.. |+..........+...+++++|...+++..... .|+...+ .......|++..+
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-
Confidence 88899999999998888764 333322222223445678888888887655432 2332221 1222334555443
Q ss_pred HHHHHHHHcC---C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC
Q 002701 315 WLMNEMIELG---L---VPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLG 359 (890)
Q Consensus 315 ~~~~~~~~~~---~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 359 (890)
+.+..+.+.. . +....+|..++..+.+.|++++|...|+++.+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3444443221 1 0122456666666667777777777776666544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-08 Score=92.03 Aligned_cols=203 Identities=15% Similarity=0.004 Sum_probs=108.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 002701 647 YSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCK 726 (890)
Q Consensus 647 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 726 (890)
...|.-+|...|+...|..-+++.++.+ +.+..++..+...|.+.|..+.|.+.|++.++.. +.+-...|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3344445556666666666666555543 2334455555555556666666666666555543 2233445555555556
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002701 727 AGYMDKAELLCKEMLASGSLP-NQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKL 805 (890)
Q Consensus 727 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 805 (890)
.|++++|...|++.+....-+ -..+|..+.-+..+.|+.+.|...|++.++..|..+.+...+.....+.|++-.|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 666666666666555432111 2334555555555566666666666666655555555555566666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 002701 806 LGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPL 854 (890)
Q Consensus 806 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 854 (890)
++.....+. ++...+...|+.--+.|+.+.|-++=..+.. ..|...
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~ 241 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSE 241 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcH
Confidence 655555432 4555554445555555555555555555544 444433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-07 Score=96.96 Aligned_cols=107 Identities=7% Similarity=0.015 Sum_probs=83.3
Q ss_pred HHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 002701 108 LIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLMREKHLMP 187 (890)
Q Consensus 108 l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 187 (890)
-++..+.+|+|+.|..++-..+..+|. +...|..-..+|...|+|++|+.--.+.++..+.
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~------------------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~- 68 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPT------------------NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD- 68 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCC------------------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-
Confidence 456778899999999999988877663 2233444567889999999999877776665433
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002701 188 EVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSL 234 (890)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (890)
=...|+....++.-.|+|++|...|.+-++.. +.|...++.+.+++
T Consensus 69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 34568888888999999999999999998877 77788888888887
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-07 Score=89.08 Aligned_cols=193 Identities=12% Similarity=0.093 Sum_probs=106.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 002701 157 FDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIH-SAVMRSLC 235 (890)
Q Consensus 157 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 235 (890)
|+..+..+.+..++.+|++.+..-.++.+. +....+.+..++....++..|...|+++...- |...-| ..-.+++.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 444566678888999999988877766543 66677888888999999999999999987653 333222 34566777
Q ss_pred ccCChhhHHHHHHHHHhCCCCCChhhHHHH--HHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHH
Q 002701 236 ELKDFVKAKEMIHFMDSNGSDLNVVVYNIL--IHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFG 313 (890)
Q Consensus 236 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 313 (890)
+.+.+.+|+.+...|... ++...-..- .......+++..+..+.++....| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 888888888888777632 122111111 122344555555555555543211 222222222233344555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCC
Q 002701 314 VWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLG 359 (890)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 359 (890)
.+-|+...+.+.-.+-.+| .+.-+..+.|+++.|++...+++++|
T Consensus 164 vqkFqaAlqvsGyqpllAY-niALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAY-NLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHHHhhcCCCchhHH-HHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 5555554443222112222 22233334444444444444444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6e-08 Score=99.34 Aligned_cols=225 Identities=13% Similarity=0.011 Sum_probs=135.1
Q ss_pred ChHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002701 624 RLKDALGACREMVERGV-NM--DLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFR 700 (890)
Q Consensus 624 ~~~~A~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 700 (890)
..+.++.-+.+++.... .| ....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555555555554321 11 12345555555666667777776666666653 3356677777777778888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 002701 701 LWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLL 780 (890)
Q Consensus 701 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 780 (890)
.|++.++.. +.+..+|..+...+...|++++|++.+++.++. .|+..........+...++.++|...+.+.....+
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 888887753 224566777777777888888888888888764 34332222222233456778888888876665333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 002701 781 ANTVTYNILIHGFCTMGKFEEATKLLGGMMDN---G--ILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DP 853 (890)
Q Consensus 781 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~ 853 (890)
++...+ .......|+..++ +.++.+.+. . +.| ...+|..++..+.+.|++++|+..|+++++ ..| |.
T Consensus 197 ~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~--~~~~~~ 270 (296)
T PRK11189 197 KEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA--NNVYNF 270 (296)
T ss_pred ccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCchH
Confidence 332222 2222334555443 244444321 1 112 235788888888888999999999988888 554 55
Q ss_pred HHHHH
Q 002701 854 LAYNF 858 (890)
Q Consensus 854 ~~~~~ 858 (890)
.-+..
T Consensus 271 ~e~~~ 275 (296)
T PRK11189 271 VEHRY 275 (296)
T ss_pred HHHHH
Confidence 54443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-05 Score=83.91 Aligned_cols=161 Identities=18% Similarity=0.120 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002701 682 YTSMIDAKGKAGNLK---EAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDY 758 (890)
Q Consensus 682 ~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 758 (890)
.+.+++.|-+.++.. +|+-+++...... +.|..+-..+|+.|+-.|-+..|.++|+.+--+.+..|..-|.. ...
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHH
Confidence 456677777777655 3444444444432 33555556678888888888888888888866666666555543 234
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHH---HHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002701 759 LTREGKMEKAVQLHNAMLDGLLANT-VTYNILIHGFCTMGKFEEATKL---LGGMMDNGILPDCITYSTIIYQYCKRGYL 834 (890)
Q Consensus 759 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~---~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 834 (890)
+...|.+..+...++..++-+..+. .+-..++.+ .+.|.+.+..++ -+++......--..+-+..+..++..++.
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~ 595 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG 595 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 4566777777777777666222221 122222223 344555444433 33333211111123335566667777777
Q ss_pred HHHHHHHHHHH
Q 002701 835 HEALKLWDSML 845 (890)
Q Consensus 835 ~~A~~~~~~~~ 845 (890)
++-...+..|.
T Consensus 596 ~q~~~~~~~~~ 606 (932)
T KOG2053|consen 596 TQLLKLLESMK 606 (932)
T ss_pred HHHHHHHhccc
Confidence 77666666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-07 Score=97.48 Aligned_cols=203 Identities=9% Similarity=-0.045 Sum_probs=122.9
Q ss_pred cHhHHHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 002701 101 STASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLM 180 (890)
Q Consensus 101 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 180 (890)
...+|..++.++...++.+++...+.......+...+ ......+.+..+...|++++|...+++.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~e~~~~~a~~~~~~g~~~~A~~~~~~~ 69 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT---------------ERERAHVEALSAWIAGDLPKALALLEQL 69 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4667777888888888888876666665554431111 1112233455677888899998888888
Q ss_pred HhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCC
Q 002701 181 REKHLMPEVRTLSGVLNGLVK----IRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSD 256 (890)
Q Consensus 181 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 256 (890)
....+. +...+.. ...+.. .+..+.+...+.... ...+........+..++...|++++|...+++..+.. +
T Consensus 70 l~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p 145 (355)
T cd05804 70 LDDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-P 145 (355)
T ss_pred HHHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 766443 3333332 222222 344444444444311 1113334455566677788888888888888888774 3
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHCCC-CCCH--HhHHHHHHHHHccCChHHHHHHHHHHHH
Q 002701 257 LNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGV-KADV--VTYCTLVLGLCKVQEFEFGVWLMNEMIE 322 (890)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 322 (890)
.+...+..+..+|...|++++|...+++...... .|+. ..|..+...+...|++++|..++++...
T Consensus 146 ~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 146 DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3456677777788888888888888887776432 1222 2334555566666777777777666643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.6e-07 Score=94.48 Aligned_cols=199 Identities=10% Similarity=-0.014 Sum_probs=131.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002701 154 SLGFDLLIQSYVQNKRVADGVFVFRLMREKHL-MPEVR-TLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVM 231 (890)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 231 (890)
..++..++..+...|+.++|...+........ .++.. ........+...|++++|...++++.+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 45677788888888999998888877654322 22322 12223335677899999999999998875 555555443 2
Q ss_pred HHHHc----cCChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 002701 232 RSLCE----LKDFVKAKEMIHFMDSNGSDLN-VVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCK 306 (890)
Q Consensus 232 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 306 (890)
..+.. .|....+.+.++... ...|+ ......+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 23333 344455555554411 11233 3344556667888999999999999988863 3345567777788888
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 002701 307 VQEFEFGVWLMNEMIELGLV-PSE--AAVSSLVEGFRRKGKIDDAFNLVNKLGP 357 (890)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 357 (890)
.|++++|...++...+.... ++. ..+..++..+...|++++|..+++++..
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 88888888888888765322 222 2355677888888888888888888754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.6e-06 Score=81.13 Aligned_cols=326 Identities=11% Similarity=0.070 Sum_probs=195.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHc
Q 002701 158 DLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYI-HSAVMRSLCE 236 (890)
Q Consensus 158 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 236 (890)
.-|+..++-.|++.+|+.-|..+.+.++. +-.++..-...|...|+...|+.-+..+++. +||-.. -..-..++.+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 34788899999999999999998876544 4456666777888899999999999999875 566543 3445677889
Q ss_pred cCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 002701 237 LKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWL 316 (890)
Q Consensus 237 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 316 (890)
+|.+++|..-|+.+++..+..+.+ ..++.+.-..++-+. ....+..+...|+...|++.
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~-----~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLV-----LEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchh-----HHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHH
Confidence 999999999999998874321111 111111111111111 12223344556777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 002701 317 MNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLS 396 (890)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 396 (890)
...+++.. +-+...+..-..+|...|++..|+.=++.+.+.. ..+......+...+..-|+.+.++...++..+. .
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--d 253 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--D 253 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--C
Confidence 77776642 1245555555666666676666666666555443 234444444555555666666666666666654 3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHH---
Q 002701 397 PNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYT--- 473 (890)
Q Consensus 397 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--- 473 (890)
||....-.. | ..+.+..+.++.|.+ ....++|.++++-.+..++..+....+.++
T Consensus 254 pdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r 311 (504)
T KOG0624|consen 254 PDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFR 311 (504)
T ss_pred cchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeh
Confidence 443221110 1 111222222222222 233466666666666666664332233333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002701 474 SLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERN 534 (890)
Q Consensus 474 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 534 (890)
.+-.++...+++.+|++.-.+.++. .+.|+.++..-..+|.-...+++|+.-|+...+.+
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 3334455667788888877777764 23346777777777777778888888888777764
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=0.00015 Score=79.57 Aligned_cols=225 Identities=13% Similarity=0.125 Sum_probs=132.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 002701 165 VQNKRVADGVFVFRLMREKHLM-PEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKA 243 (890)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 243 (890)
...++|..|+.-.++.....++ +-..++..+. +.+.|+.++|..+++.....+ ..|..|...+-.+|...|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHH
Confidence 4556777888777777554322 2223333333 677788888887777776655 44777888888888888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHcc-CC---------hHHH
Q 002701 244 KEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKV-QE---------FEFG 313 (890)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~---------~~~A 313 (890)
..++++..+. .|+......+-.+|.+.+.|.+-.+.--++-+. ++-+.+.+-++++..... .. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 8888888766 456555566666777777766544433333332 333444444444433322 11 1234
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 002701 314 VWLMNEMIELG-LVPSEAAVSSLVEGFRRKGKIDDAFNLV-NKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMK 391 (890)
Q Consensus 314 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 391 (890)
....+.+++.+ ...+..-...-...+-.+|++++|..++ ....+.-.+.+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 45555665554 2122222222334445677788888887 333333323444445566677777888888888877777
Q ss_pred HCCC
Q 002701 392 QKGL 395 (890)
Q Consensus 392 ~~g~ 395 (890)
.+|.
T Consensus 254 ~k~~ 257 (932)
T KOG2053|consen 254 EKGN 257 (932)
T ss_pred HhCC
Confidence 7753
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-06 Score=81.65 Aligned_cols=317 Identities=14% Similarity=0.103 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHH-HHHH
Q 002701 504 SYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYR-SLIT 582 (890)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l~~ 582 (890)
+.-..-+...+...|++.+|+.-|...++-+ +.+-.++-.-...|...|+...|+.-+.+.++. +||-..-. .-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 3333445555666666666666666665542 112223333344556666666666666666553 44433221 2233
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 002701 583 GLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRR 662 (890)
Q Consensus 583 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 662 (890)
.+.++|.++.|..-|+.+++..+.... ...++.+.-..++-.. ....+..+...|+...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhh
Confidence 455666666666666666655322110 0011111111111111 1112233445677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002701 663 YFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLA 742 (890)
Q Consensus 663 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 742 (890)
|++....+.+.. +-|...+..-..+|...|++..|+.-+....+.. ..+...+.-+...+...|+.+.++....+.++
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 777777777652 4456666666777777788777777666665543 23444555556666677777777777777774
Q ss_pred CCCCCCHHHHHHHH-------------HHHHhcCCHHHHHHHHHHHhcCCCC-CHHHH---HHHHHHHHhcCCHHHHHHH
Q 002701 743 SGSLPNQITYGCFL-------------DYLTREGKMEKAVQLHNAMLDGLLA-NTVTY---NILIHGFCTMGKFEEATKL 805 (890)
Q Consensus 743 ~~~~p~~~~~~~l~-------------~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~---~~l~~~~~~~g~~~~A~~~ 805 (890)
+.||.......- ......+++-++++..+..++..|. ....+ ..+..++...|++.+|+..
T Consensus 252 --ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 --LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred --cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 456654322211 1123455666666666666663333 22222 2344555556667777776
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 002701 806 LGGMMDNGILPD-CITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD 852 (890)
Q Consensus 806 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 852 (890)
-.++++ +.|| ..++.--..+|.-...++.|+.-|+++.+ ..++
T Consensus 330 C~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~s 373 (504)
T KOG0624|consen 330 CKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNES 373 (504)
T ss_pred HHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcc
Confidence 666665 4454 45666666666666667777777777666 5553
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-07 Score=97.35 Aligned_cols=260 Identities=14% Similarity=0.096 Sum_probs=168.4
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 002701 583 GLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRR 662 (890)
Q Consensus 583 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 662 (890)
-+.+.|++.+|.-.|+..++.++. +..+|..|.......++-..|+..+.+..+..+. +....-.|...|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 345667777777777777766533 6666777776666677667777777776665332 45555555556666666566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-
Q 002701 663 YFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEML- 741 (890)
Q Consensus 663 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 741 (890)
|+..+...+....+-- .+..+ ...++.+.- +-.++... .....++|-++.
T Consensus 372 Al~~L~~Wi~~~p~y~-----~l~~a-~~~~~~~~~----------~s~~~~~~-------------l~~i~~~fLeaa~ 422 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYV-----HLVSA-GENEDFENT----------KSFLDSSH-------------LAHIQELFLEAAR 422 (579)
T ss_pred HHHHHHHHHHhCccch-----hcccc-CccccccCC----------cCCCCHHH-------------HHHHHHHHHHHHH
Confidence 6666655554321100 00000 000000000 00112211 222233333333
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HH
Q 002701 742 ASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-IT 820 (890)
Q Consensus 742 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~ 820 (890)
..+..+|..+...|.-.|.-.|++++|+..|+.++...|.|...||-|+-.+....+.++|+..|.++++ +.|.. .+
T Consensus 423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~ 500 (579)
T KOG1125|consen 423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRV 500 (579)
T ss_pred hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeee
Confidence 3343467777888888888999999999999999998899999999999999999999999999999998 77876 56
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 002701 821 YSTIIYQYCKRGYLHEALKLWDSMLN---KGLKP------DPLAYNFLIYGCCIRGEITKAFEL 875 (890)
Q Consensus 821 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~g~~p------~~~~~~~l~~~~~~~g~~~~A~~~ 875 (890)
...|+-+|...|.+++|.+.|-+++. ++..+ +..+|..|=.++.-.++.+-+.+.
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 67888899999999999999988765 21112 235777777777777777755443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-07 Score=95.63 Aligned_cols=225 Identities=18% Similarity=0.151 Sum_probs=124.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 002701 612 YSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRP-DNVIYTSMIDAKG 690 (890)
Q Consensus 612 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~ 690 (890)
...+.+++...|+.+.++. ++... ..|.......+...+...++.+.++.-+++.......+ +..........+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 3344455555565543322 22222 23444444333333322233444444444433332222 2222222334455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHH
Q 002701 691 KAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYL----TREGKME 766 (890)
Q Consensus 691 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~ 766 (890)
..|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|.. ...++.++ ...++++
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhHH
Confidence 677777777766532 35566666777778888888888888887743 33433 22233332 2233578
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 002701 767 KAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYL-HEALKLWDSML 845 (890)
Q Consensus 767 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 845 (890)
+|.-+|+++.+..++++.+++.++.+....|++++|.++++++.+.. +-+..++..++-+....|+. +.+.+++.++.
T Consensus 185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 88888888777777788888888888888888888888888877542 22456677777777777776 55667777776
Q ss_pred hCCCCCC
Q 002701 846 NKGLKPD 852 (890)
Q Consensus 846 ~~g~~p~ 852 (890)
+ ..|+
T Consensus 264 ~--~~p~ 268 (290)
T PF04733_consen 264 Q--SNPN 268 (290)
T ss_dssp H--HTTT
T ss_pred H--hCCC
Confidence 6 5564
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-05 Score=96.61 Aligned_cols=232 Identities=16% Similarity=0.093 Sum_probs=109.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC--C-CHHHH
Q 002701 615 LLHGYCKEGRLKDALGACREMVERGV---NM--DLVCYSVLIDGSLKQSDTRRYFGLLKEMHDK----GLR--P-DNVIY 682 (890)
Q Consensus 615 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~ 682 (890)
+...+...|++++|...+.+...... .+ ...++..+...+...|++++|...+++.... +.. + ....+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 33444455555555555554442110 00 0112233333445555555555555544321 111 0 11223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHH--HH--
Q 002701 683 TSMIDAKGKAGNLKEAFRLWDIMIGE--GCVP--NVVTYTALINGLCKAGYMDKAELLCKEMLAS--GSLPNQI--TY-- 752 (890)
Q Consensus 683 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~--~~-- 752 (890)
..+...+...|++++|...++..... ...+ ....+..+...+...|++++|...+.+.... ....... ..
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 656 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD 656 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence 33334444556666666666555432 0111 1223333445556667777776666665432 1000000 00
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 002701 753 GCFLDYLTREGKMEKAVQLHNAMLDGLLANT----VTYNILIHGFCTMGKFEEATKLLGGMMDN----GILPD-CITYST 823 (890)
Q Consensus 753 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~ 823 (890)
...+..+...|+.+.|...+........... ..+..++.++...|++++|...++++... |..++ ..++..
T Consensus 657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 0111233446677777666655443111111 11344566666777777777777766542 22221 134555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 002701 824 IIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 824 l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
+..++.+.|+.++|...+.++++
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66667777777777777777766
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-05 Score=96.23 Aligned_cols=268 Identities=13% Similarity=0.044 Sum_probs=177.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHH
Q 002701 616 LHGYCKEGRLKDALGACREMVERGVNMDL----VCYSVLIDGSLKQSDTRRYFGLLKEMHDKGL---RP--DNVIYTSMI 686 (890)
Q Consensus 616 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~li 686 (890)
...+...|++++|...+++........+. ...+.+...+...|++++|...+.+...... .+ ....+..+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34456788888888888887663222222 2345555667789999999999988764311 11 123445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCC--CHHHHHHH
Q 002701 687 DAKGKAGNLKEAFRLWDIMIGE----GCV--P-NVVTYTALINGLCKAGYMDKAELLCKEMLAS--GSLP--NQITYGCF 755 (890)
Q Consensus 687 ~~~~~~g~~~~A~~~~~~~~~~----~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p--~~~~~~~l 755 (890)
..+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 6778899999999998876653 211 1 2233455566677889999999999887653 1112 23344456
Q ss_pred HHHHHhcCCHHHHHHHHHHHhc--CCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 002701 756 LDYLTREGKMEKAVQLHNAMLD--GLLANTVTY-----NILIHGFCTMGKFEEATKLLGGMMDNGILPD---CITYSTII 825 (890)
Q Consensus 756 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 825 (890)
...+...|+.++|...+..+.. ........+ ...+..+...|+.+.|...+........... ...+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 6677889999999999988865 111111111 1122444557999999999877654211111 11245678
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002701 826 YQYCKRGYLHEALKLWDSMLNK----GLKPD-PLAYNFLIYGCCIRGEITKAFELRDDMMRRG 883 (890)
Q Consensus 826 ~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 883 (890)
.++...|++++|...++++++. |..++ ..+...+..++.+.|+.++|...+.++++..
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8899999999999999998762 32322 3456677788999999999999999998654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-07 Score=94.91 Aligned_cols=252 Identities=12% Similarity=0.038 Sum_probs=166.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002701 617 HGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLK 696 (890)
Q Consensus 617 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 696 (890)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++. ++.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455777887776555 2222222234455667788888998776543 333333 666666666665554445556
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 697 EAFRLWDIMIGEGCVP-NVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAM 775 (890)
Q Consensus 697 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 775 (890)
.+..-++........+ +..........+...|++++|++++++. .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6665555444333232 3333333345667789999999988753 45666677889999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C
Q 002701 776 LDGLLANTVTYNILIHGFCTM--GKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-D 852 (890)
Q Consensus 776 ~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~ 852 (890)
.+-...+..+-.+..+..... +.+.+|.-+|+++.+. ..++..+++.++.++...|++++|.+.+++.++ ..| +
T Consensus 158 ~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~ 234 (290)
T PF04733_consen 158 QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPND 234 (290)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCH
T ss_pred HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCC
Confidence 885444444433333333333 4699999999998775 567889999999999999999999999999987 556 6
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 002701 853 PLAYNFLIYGCCIRGEI-TKAFELRDDMMRR 882 (890)
Q Consensus 853 ~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 882 (890)
+.+...++-+....|+. +.+.++++++.+.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 77888888888888988 6677888887753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-06 Score=93.59 Aligned_cols=214 Identities=14% Similarity=0.092 Sum_probs=123.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002701 613 SALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKA 692 (890)
Q Consensus 613 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 692 (890)
..+...+...|-..+|..+|+++. .|.-.|.+|...|+..+|..+..+..+. +||...|..+++.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 344555666666666666666443 3555566666666666666666665552 56666666666655544
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002701 693 GNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLH 772 (890)
Q Consensus 693 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 772 (890)
.-+++|.++++..... +-..+.....+.+++.++.+.|+.-.+.+ +--..+|..+.-+..+.++++.|...|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 4455555555543321 11112222233566666666666655432 224455555555556666666666666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 773 NAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 773 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
.....+.|.+...||.+..+|.+.|+..+|...++++.+.+ .-+...|.+.+....+.|.+++|++.+.++++
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666654 22334555555566666666666666666655
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.1e-07 Score=89.91 Aligned_cols=184 Identities=11% Similarity=0.030 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC-HHH
Q 002701 678 DNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPN----VVTYTALINGLCKAGYMDKAELLCKEMLASGSL-PN-QIT 751 (890)
Q Consensus 678 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~ 751 (890)
....+..++..+...|++++|...|+++.... |+ ...+..+...+...|++++|+..++++++.... |. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44455566666667777777777777766652 22 134555666677777777777777777654211 11 113
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002701 752 YGCFLDYLTRE--------GKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYST 823 (890)
Q Consensus 752 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 823 (890)
+..+..++... |+.++|.+.++.+++..|.+...+..+..... .... . ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~-------~-------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR-------L-------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH-------H-------HHHHHH
Confidence 44444444443 56667777777776655555444433222111 0000 0 011235
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002701 824 IIYQYCKRGYLHEALKLWDSMLNKGLKP----DPLAYNFLIYGCCIRGEITKAFELRDDMMRRG 883 (890)
Q Consensus 824 l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 883 (890)
+...+.+.|++.+|+..++++++ ..| ....+..++.++.+.|++++|.++++.+..+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVE--NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH--HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66778899999999999999988 333 35788899999999999999999999887543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-07 Score=95.74 Aligned_cols=197 Identities=12% Similarity=0.109 Sum_probs=139.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--------CH
Q 002701 678 DNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLP--------NQ 749 (890)
Q Consensus 678 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--------~~ 749 (890)
+...|..|.......++-..|+..+.+.++.+ +.|....-+|.-.|...|.-.+|+..+++.+....+- +.
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~ 396 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENE 396 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccc
Confidence 33444444444445566666666666666653 2355566666666777777777777777776542110 00
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 002701 750 ITYGCFLDYLTREGKMEKAVQLHNAMLDGL--LANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD-CITYSTIIY 826 (890)
Q Consensus 750 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 826 (890)
..-.. ........+....++|-.+.... .+|+.+...|+-.|.-.|.+++|++.|+.++. +.|+ ..+|+.|+.
T Consensus 397 ~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 397 DFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGA 472 (579)
T ss_pred cccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhH
Confidence 00000 01111122344455666665533 48999999999999999999999999999998 5664 588999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 827 QYCKRGYLHEALKLWDSMLNKGLKPDP-LAYNFLIYGCCIRGEITKAFELRDDMMR 881 (890)
Q Consensus 827 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 881 (890)
.+....+.++|+..|.++++ +.|.. .+++.|+-.|...|.+++|.+.|=+++.
T Consensus 473 tLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999 99964 6788999999999999999999988773
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00051 Score=71.11 Aligned_cols=184 Identities=11% Similarity=0.145 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 002701 661 RRYFGLLKEMHDKGLRPDNVIYTSMIDAKG---KAGNLKEAFRLWDIMIGE-GCVPNVVTYTALINGLCKAGYMDKAELL 736 (890)
Q Consensus 661 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 736 (890)
+++..+++..++.-...+..+|..+.+.-- +..+.+....+++++... ...|+ .+|..+++.-.+..-+..|..+
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHH
Confidence 455555555544333334444444433211 112355666677777665 33444 4677788888888889999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002701 737 CKEMLASGSLP-NQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGIL 815 (890)
Q Consensus 737 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 815 (890)
|.+..+.+..+ .+.+..+++..+| .++.+-|.++|+.-++..+.++..-+..++-+...++-..|..+|++.+..++.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 99999887766 7778888888765 578999999999999988888888889999999999999999999999988777
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 816 PDC--ITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 816 p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
|+. .+|..++.--..-|+.+.++++-+++..
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 665 8899999999999999999999888766
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-05 Score=82.19 Aligned_cols=201 Identities=12% Similarity=0.046 Sum_probs=101.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh--hHHH
Q 002701 658 SDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAG-NLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYM--DKAE 734 (890)
Q Consensus 658 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~ 734 (890)
++.++|+.+..++++.. +.+..+|+.....+...| ++++++..++++.+.. +.+..+|+.....+.+.|+. ++++
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 34444444444444331 112223333333333444 3566666666665543 22334454443334444432 4556
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCH----HHHHHHHH
Q 002701 735 LLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTM---GKF----EEATKLLG 807 (890)
Q Consensus 735 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~ 807 (890)
.+++++++.. +-|..+|.....++...|++++|++.++++++..+.|..+|+.....+.+. |.. ++++++..
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 6666666442 335556666666666666666666666666665566666666665555443 222 34555555
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 002701 808 GMMDNGILP-DCITYSTIIYQYCKR----GYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCI 865 (890)
Q Consensus 808 ~~~~~~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 865 (890)
+++.. .| +...|+.+...+... ++..+|...+.+..+ ..| +......|++.|+.
T Consensus 208 ~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 208 DAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 55552 33 335566555555552 234456666666555 334 44555556666554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00062 Score=70.53 Aligned_cols=185 Identities=12% Similarity=0.131 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002701 695 LKEAFRLWDIMIGEGCVPNVVTYTALINGLCKA---GYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQL 771 (890)
Q Consensus 695 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 771 (890)
.+++..+++..++.-...+...|..+.+---.. ...+..-..+++++..-...-..+|..+++...+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 456666676665542233444555444321111 12555666777776543333345777788888888889999999
Q ss_pred HHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 002701 772 HNAMLD-GLLA-NTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGL 849 (890)
Q Consensus 772 ~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 849 (890)
|.++.+ +..+ ++.+.++++.-+| .++.+-|.++|+--+.+ ...+..--...+.-+...++-+.|..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 999998 4444 7888899998887 67889999999987764 222334446678888899999999999999999877
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 850 KPD--PLAYNFLIYGCCIRGEITKAFELRDDMMR 881 (890)
Q Consensus 850 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 881 (890)
.|+ ..+|..++.-=..-|+...+.++-+++..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 774 58999999999999999999999888763
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-05 Score=79.97 Aligned_cols=224 Identities=11% Similarity=0.077 Sum_probs=138.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHH
Q 002701 621 KEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQS-DTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGN--LKE 697 (890)
Q Consensus 621 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~ 697 (890)
..++.++|+...+++++..+. +..+|+.....+...+ ..++++..+.++.+.. +.+..+|+...-.+.+.|+ .++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 344555666666666554322 3334444444444444 3566666666666543 2233344433333334444 256
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHHHH
Q 002701 698 AFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTRE---GK----MEKAVQ 770 (890)
Q Consensus 698 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~ 770 (890)
+..+++++++.+ +-|..+|+.....+...|++++|++.++++++.+ +-|..+|+.....+.+. |. .++++.
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 677777777664 3467777777777777788888888888888764 33555665555444433 22 246777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------------
Q 002701 771 LHNAMLDGLLANTVTYNILIHGFCTM----GKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRG-------------- 832 (890)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------------- 832 (890)
...+++...|.|..+|+.+...+... ++..+|.+.+.+....+ +.+...+..|++.|+...
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 77788888888888998888888773 45567888888876632 235567788888887632
Q ss_pred ----CHHHHHHHHHHHHhCCCCC
Q 002701 833 ----YLHEALKLWDSMLNKGLKP 851 (890)
Q Consensus 833 ----~~~~A~~~~~~~~~~g~~p 851 (890)
..++|.++++.+.+ .+|
T Consensus 284 ~~~~~~~~a~~~~~~l~~--~d~ 304 (320)
T PLN02789 284 EELSDSTLAQAVCSELEV--ADP 304 (320)
T ss_pred cccccHHHHHHHHHHHHh--hCc
Confidence 23667777777743 555
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-06 Score=81.93 Aligned_cols=149 Identities=9% Similarity=0.124 Sum_probs=117.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002701 686 IDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKM 765 (890)
Q Consensus 686 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 765 (890)
+..|...|+++......+.+.. |. ..+...++.++++..+++.++.+ +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4568889998887555433321 11 01223677788888888888753 56788899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 002701 766 EKAVQLHNAMLDGLLANTVTYNILIHGF-CTMGK--FEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLW 841 (890)
Q Consensus 766 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 841 (890)
++|...|+++.+..|.+...+..++.++ ...|+ .++|.++++++.+. .| +..++..++..+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998888999999999874 66677 59999999999984 44 5578888999999999999999999
Q ss_pred HHHHhCCCCC
Q 002701 842 DSMLNKGLKP 851 (890)
Q Consensus 842 ~~~~~~g~~p 851 (890)
+++++ ..|
T Consensus 168 ~~aL~--l~~ 175 (198)
T PRK10370 168 QKVLD--LNS 175 (198)
T ss_pred HHHHh--hCC
Confidence 99988 444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-06 Score=91.88 Aligned_cols=277 Identities=16% Similarity=0.043 Sum_probs=202.4
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 002701 570 LVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSV 649 (890)
Q Consensus 570 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 649 (890)
.+|--..-..+...+.+.|-...|..+++++. .|.-.+.+|+..|+..+|..+..+..++ +||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 44444555667788899999999999998654 5888899999999999999999888874 789999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 002701 650 LIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGY 729 (890)
Q Consensus 650 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 729 (890)
+.+.....--+++|.++.+..... .-..+.......++++++.+.|+.-.+.. +-...+|-.+.-+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 999888888889999988865432 00111111224689999999998887764 3466788888888889999
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 730 MDKAELLCKEMLASGSLP-NQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGG 808 (890)
Q Consensus 730 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 808 (890)
++.|.+.|.....- .| +...||.+..+|.+.|+..+|...+.++++-.-.+...|...+....+.|.+++|++.+.+
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999853 45 5678999999999999999999999999993366777888888888999999999999999
Q ss_pred HHHCCC-CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 809 MMDNGI-LPDCITYSTIIYQYCKRGY---LHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDD 878 (890)
Q Consensus 809 ~~~~~~-~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 878 (890)
+.+... .-|..+...++....+.-. .+++...... .-..++....+.++..+-.+++..
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~-----------~kelmg~~~~qv~~s~~~wrL~a~ 675 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGK-----------LKELLGKVLSQVTNSPETWRLYAL 675 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHH-----------HHHHHHHHHHHHhCchhhhHhHhh
Confidence 985311 1244555555544443221 2222221111 113455666666665555555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6e-06 Score=77.56 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 002701 718 TALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMG 797 (890)
Q Consensus 718 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 797 (890)
..+...+...|+-+.+..+....... .+.|.......+....+.|++.+|+..++++....|+|..+|+.++-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 33444555556666665555554321 12344444445555666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 002701 798 KFEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFEL 875 (890)
Q Consensus 798 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 875 (890)
++++|...|.+..+ +.| +...++.|+..+.-.|+++.|..++.+... ..+ |..+-..|.......|+.++|..+
T Consensus 149 r~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 66666666666665 233 335556666666666666666666666655 333 555555566666666666666654
Q ss_pred H
Q 002701 876 R 876 (890)
Q Consensus 876 ~ 876 (890)
.
T Consensus 225 ~ 225 (257)
T COG5010 225 A 225 (257)
T ss_pred c
Confidence 4
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-06 Score=83.79 Aligned_cols=194 Identities=9% Similarity=-0.107 Sum_probs=127.4
Q ss_pred CCCCccHhHHHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHH
Q 002701 96 KTFNHSTASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVF 175 (890)
Q Consensus 96 ~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 175 (890)
|...-....+..++..+...|++++|...++.++...|.... ...++..++.+|...|++++|+.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------------~~~a~~~la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY---------------AEQAQLDLAYAYYKSGDYAEAIA 91 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh---------------HHHHHHHHHHHHHhcCCHHHHHH
Confidence 344567888999999999999999999999999887764321 12356778899999999999999
Q ss_pred HHHHHHhCCCCCCH--hhHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHH
Q 002701 176 VFRLMREKHLMPEV--RTLSGVLNGLVKI--------RQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKE 245 (890)
Q Consensus 176 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 245 (890)
.|+++.+..+.... .++..+..++.+. |++++|...|+.+.+.. +.+...+..+..... ....
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~-- 164 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR-- 164 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH--
Confidence 99999775543221 2455566666654 67888999999888765 333333322211100 0000
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCC-CC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 002701 246 MIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGV-KA-DVVTYCTLVLGLCKVQEFEFGVWLMNEMIEL 323 (890)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 323 (890)
. ......+...|.+.|++.+|+..+++..+... .| ....+..+...+.+.|++++|..+++.+...
T Consensus 165 -----~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 165 -----L-------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -----H-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0 00112345567777888888877777776532 12 3456677777777788888888777776654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.8e-06 Score=78.50 Aligned_cols=147 Identities=12% Similarity=0.058 Sum_probs=100.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 002701 652 DGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMD 731 (890)
Q Consensus 652 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 731 (890)
..|...|+++.+....+.+... . ..+...++.+++...++..++.+ +.|...|..+...|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 3467777777754433222111 0 01113566677777777776654 457777888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 732 KAELLCKEMLASGSLPNQITYGCFLDYL-TREGK--MEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGG 808 (890)
Q Consensus 732 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 808 (890)
+|...|++..+.. +.+...+..+..++ ...|+ .++|.++++++++..|.+..++..++..+.+.|++++|+..+++
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888877653 33566666666653 56666 47888888888887777888888888888888888888888888
Q ss_pred HHHC
Q 002701 809 MMDN 812 (890)
Q Consensus 809 ~~~~ 812 (890)
+++.
T Consensus 170 aL~l 173 (198)
T PRK10370 170 VLDL 173 (198)
T ss_pred HHhh
Confidence 8774
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-05 Score=89.35 Aligned_cols=226 Identities=14% Similarity=0.126 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 002701 643 DLVCYSVLIDGSLKQSDTRRYFGLLKEMHDK-GLRPD---NVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYT 718 (890)
Q Consensus 643 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 718 (890)
+...|-..+.-..+.++.++|.++.+++... +++.. ...|.++++.-..-|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4556666666667777777777777776643 12111 2245555555555567777788888887752 3345677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhc
Q 002701 719 ALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLA--NTVTYNILIHGFCTM 796 (890)
Q Consensus 719 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 796 (890)
.|...|.+.+.+++|.++++.|.++ +......|...++.+.++.+-++|..++.++++-.|. ......-.+..-++.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8888888888888888888888876 4466778888888888888888888888888885555 555666677777888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHH
Q 002701 797 GKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD-P-LAYNFLIYGCCIRGEITKA 872 (890)
Q Consensus 797 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A 872 (890)
|+.+.+..+|+..+.. .+.-...|+.+++.-.++|+.+.+..+|++++..++.|- . ..|...+..=-+.|+-+.+
T Consensus 1614 GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred CCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 8888888888888764 233457888888888888888888888988888878773 2 3333444333344554433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-05 Score=89.44 Aligned_cols=232 Identities=12% Similarity=0.100 Sum_probs=182.9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002701 597 VDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMD-----LVCYSVLIDGSLKQSDTRRYFGLLKEMH 671 (890)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~ 671 (890)
|+++.... +.+...|-..+....+.++.++|+++.++++.. +.+. .-.|.++++.-...|.-+...++|+++.
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 33444433 446778888888899999999999999998865 3221 2357777777777777778888898887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---
Q 002701 672 DKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPN--- 748 (890)
Q Consensus 672 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--- 748 (890)
+. -.....|..|...|.+.++.++|.++++.|.+. +......|...+..+.+.++-+.|..++.+.++. -|.
T Consensus 1525 qy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eH 1599 (1710)
T KOG1070|consen 1525 QY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEH 1599 (1710)
T ss_pred Hh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhh
Confidence 75 334567889999999999999999999999987 2357778999999999999999999999999875 343
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 002701 749 QITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC--ITYSTIIY 826 (890)
Q Consensus 749 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~ 826 (890)
.....-.+..-.+.|+.+.+..+|+..+...|.-...|+.+++.-.+.|+.+.+..+|+++...++.|.. ..|...+.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 2333445566679999999999999999999999999999999999999999999999999998888754 44555555
Q ss_pred HHHhcCCHH
Q 002701 827 QYCKRGYLH 835 (890)
Q Consensus 827 ~~~~~g~~~ 835 (890)
.--..|+-+
T Consensus 1680 yEk~~Gde~ 1688 (1710)
T KOG1070|consen 1680 YEKSHGDEK 1688 (1710)
T ss_pred HHHhcCchh
Confidence 444555533
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-05 Score=71.40 Aligned_cols=200 Identities=18% Similarity=0.154 Sum_probs=153.2
Q ss_pred HhcCChHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 002701 655 LKQSDTRRYFGLLKEMHD---KG-LRPDNVI-YTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGY 729 (890)
Q Consensus 655 ~~~~~~~~A~~~~~~~~~---~~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 729 (890)
....++++.++++.++.. .| ..++..+ |..++-+....|+.+.|..+++.+...- +-+...-..-...+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhc
Confidence 355688999999988874 34 5566554 4555566678899999999999988762 2232222222333567799
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 730 MDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGM 809 (890)
Q Consensus 730 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 809 (890)
+++|+++++..++.+ +.|.+++-.-+...-..|+--+|++.+...++.++.|...|.-+...|...|++++|.-.++++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999999875 5567777777777778888889999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 002701 810 MDNGILPDC-ITYSTIIYQYCKRG---YLHEALKLWDSMLNKGLKP-DPLAYNFLI 860 (890)
Q Consensus 810 ~~~~~~p~~-~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 860 (890)
+- +.|-. ..+..+...++-.| +..-|.++|.+.++ +.| +...+..+.
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~~~~ral~GI~ 232 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNPKNLRALFGIY 232 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hChHhHHHHHHHH
Confidence 87 55655 45567777776665 67779999999999 777 555554443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.4e-08 Score=61.77 Aligned_cols=32 Identities=47% Similarity=0.747 Sum_probs=17.6
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 002701 254 GSDLNVVVYNILIHGLCKSQRVFEAVEVKNGF 285 (890)
Q Consensus 254 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 285 (890)
|+.||.++||++|++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-06 Score=76.21 Aligned_cols=98 Identities=9% Similarity=-0.088 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002701 752 YGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKR 831 (890)
Q Consensus 752 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 831 (890)
+..+...+...|++++|...|+.++...|.+..+|..++.++...|++++|+..|+++.+.. +.+..++..++.++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 33455566677777777777777777667777777777777777777777777777777631 22446677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 002701 832 GYLHEALKLWDSMLNKGLKPD 852 (890)
Q Consensus 832 g~~~~A~~~~~~~~~~g~~p~ 852 (890)
|++++|+..+++.++ +.|+
T Consensus 106 g~~~eAi~~~~~Al~--~~p~ 124 (144)
T PRK15359 106 GEPGLAREAFQTAIK--MSYA 124 (144)
T ss_pred CCHHHHHHHHHHHHH--hCCC
Confidence 777777777777777 6663
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-05 Score=89.42 Aligned_cols=144 Identities=12% Similarity=0.073 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHH
Q 002701 711 VPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPN-QITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNIL 789 (890)
Q Consensus 711 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 789 (890)
+.+...+..|.....+.|.+++|..+++...+. .|+ ......++..+.+.+.+++|+..++..+...|.+....+.+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 445777777777777788888888888877754 454 44556667777778888888888888887777778888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 002701 790 IHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNF 858 (890)
Q Consensus 790 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 858 (890)
+.++.+.|++++|..+|+++... .+-+..++..++.++.+.|+.++|...|++.++. ..|....|..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHH
Confidence 88888888888888888888762 2223577777778888888888888888887763 3333344433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-05 Score=70.62 Aligned_cols=199 Identities=16% Similarity=0.145 Sum_probs=154.3
Q ss_pred hcCChHHHHHHHHHHHHc---C-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002701 621 KEGRLKDALGACREMVER---G-VNMDLVC-YSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNL 695 (890)
Q Consensus 621 ~~g~~~~A~~~~~~~~~~---~-~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 695 (890)
...+.++.++++.++... | ..++..+ |..++-+....|+.+.|...++++.+.- +.+...-..-...+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 456789999999888753 3 4445443 4455566778899999999999998774 33333333333345578999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 696 KEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAM 775 (890)
Q Consensus 696 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 775 (890)
++|.++|+.+++.+ +.|..++-.=+...-..|+.-+|++-+.+.++. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999886 446677776666677788888999999999986 7889999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 002701 776 LDGLLANTVTYNILIHGFCTMG---KFEEATKLLGGMMDNGILP-DCITYSTI 824 (890)
Q Consensus 776 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~~~~~~~l 824 (890)
+-..|.++..+..+++.+.-.| +.+-|.++|.+.++ +.| +...+..+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~~~~ral~GI 231 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNPKNLRALFGI 231 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hChHhHHHHHHH
Confidence 9988999999999999877665 56778999999988 445 44444333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-07 Score=59.45 Aligned_cols=32 Identities=44% Similarity=0.804 Sum_probs=16.6
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002701 359 GVVPNLFVYNALINSLCKERKFNEAEFLFNEM 390 (890)
Q Consensus 359 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (890)
|+.||.++||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-05 Score=89.24 Aligned_cols=134 Identities=7% Similarity=0.032 Sum_probs=122.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHH
Q 002701 745 SLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYST 823 (890)
Q Consensus 745 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ 823 (890)
...+...+..|.....+.|.+++|..+++.+++..|.+......++.++.+.+++++|+..+++.... .|+. ..+..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999984 5655 77788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 824 IIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDDMMRR 882 (890)
Q Consensus 824 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 882 (890)
+..++.+.|++++|..+|++++. -.| +..++..++..+...|+.++|...|+++++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998 556 5789999999999999999999999999853
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-05 Score=77.59 Aligned_cols=98 Identities=22% Similarity=0.326 Sum_probs=81.8
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 002701 758 YLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGYLHE 836 (890)
Q Consensus 758 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 836 (890)
-..+.+++++|+..|.++++..|.|++.|..-+.+|++.|.++.|++-.+..+. +.|.. .+|..|+.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 345788899999999999988888888888888899999999999988888887 55654 788889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHH
Q 002701 837 ALKLWDSMLNKGLKPDPLAYNFL 859 (890)
Q Consensus 837 A~~~~~~~~~~g~~p~~~~~~~l 859 (890)
|++.|++.++ +.|+..+|..=
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~n 188 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSN 188 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHH
Confidence 9999999888 88877666433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-05 Score=88.39 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002701 715 VTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFC 794 (890)
Q Consensus 715 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 794 (890)
..+..++.+|-+.|+.++|..+++++++.. +-|..+.|.++..|... ++++|.+++.+++.. +.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i 180 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FI 180 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HH
Confidence 344455555555555555555555555443 33455555555555555 555555555554431 22
Q ss_pred hcCCHHHHHHHHHHHHH------------------C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHH
Q 002701 795 TMGKFEEATKLLGGMMD------------------N-GILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPL 854 (890)
Q Consensus 795 ~~g~~~~A~~~~~~~~~------------------~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~ 854 (890)
..+++.++.++++++.+ . |..--..++..+...|.+.+++++++.+++.+++ +.| |..
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~ 258 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNK 258 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchh
Confidence 22233333333333322 1 1111223445555677777889999999999988 777 667
Q ss_pred HHHHHHHHHH
Q 002701 855 AYNFLIYGCC 864 (890)
Q Consensus 855 ~~~~l~~~~~ 864 (890)
....++.+|.
T Consensus 259 a~~~l~~~y~ 268 (906)
T PRK14720 259 AREELIRFYK 268 (906)
T ss_pred hHHHHHHHHH
Confidence 7777777765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.2e-05 Score=72.78 Aligned_cols=161 Identities=13% Similarity=0.032 Sum_probs=133.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002701 683 TSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTRE 762 (890)
Q Consensus 683 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 762 (890)
..+-..+...|+-+.+..+........ +.|.......+....+.|++.+|+..+.+.... -++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 444555556777777777777655442 345566667888899999999999999999875 477999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002701 763 GKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWD 842 (890)
Q Consensus 763 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 842 (890)
|++++|...|.+.++-.+.++..++.|+-.|.-.|+.+.|..++......+ .-|..+-..|.......|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999999999999888889999999999999999999999999998753 2266777888889999999999999877
Q ss_pred HHHh
Q 002701 843 SMLN 846 (890)
Q Consensus 843 ~~~~ 846 (890)
.-+.
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 6543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.7e-05 Score=85.37 Aligned_cols=236 Identities=12% Similarity=0.085 Sum_probs=145.8
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 002701 468 TVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNS-YTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLI 546 (890)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 546 (890)
+...+..|+..+...+++++|.++.++.++. .|+. ..|..+...+...++.+++..+ .+ +
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NL---------------I 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hh---------------h
Confidence 4567888899998999999999999877665 3443 3444444466677776665554 22 2
Q ss_pred HHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 002701 547 EGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLK 626 (890)
Q Consensus 547 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 626 (890)
+......++.-...+...|... ..+..++..++.+|-+.|+.++|..+++++.+.. +.|+.+.|.+...|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 2223333343333333344432 3345577888888888888888888888888887 44788888888888888 888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 627 DALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMI 706 (890)
Q Consensus 627 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 706 (890)
+|..++.+.+.+ +...+++..+.+++.++.... ..+.+.-..+.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-----------------~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-----------------SDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-----------------cccchHHHHHHHHHH
Confidence 888888877664 455566777777777766552 223333333444443
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002701 707 GE-GCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYL 759 (890)
Q Consensus 707 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 759 (890)
.. |..--+.++..+...|...+++++++.+++.+++.. +.|.....-++.+|
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y 267 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFY 267 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHH
Confidence 33 323334445555555555666666666666666442 22444444444444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-05 Score=71.42 Aligned_cols=121 Identities=7% Similarity=-0.139 Sum_probs=97.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 002701 699 FRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDG 778 (890)
Q Consensus 699 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 778 (890)
..++++.++. .|+. +..+...+...|++++|...|+..+... +.+...|..+..++...|++++|+..|+.+++.
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456666664 3443 5556777889999999999999998653 457888889999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 002701 779 LLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTIIY 826 (890)
Q Consensus 779 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~ 826 (890)
.|.++.++..++.++...|++++|++.++++++ +.|+. ..|.....
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~~~~ 134 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEIRQN 134 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 899999999999999999999999999999988 45654 44444333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00024 Score=66.88 Aligned_cols=138 Identities=18% Similarity=0.181 Sum_probs=65.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----
Q 002701 406 IDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCN---- 481 (890)
Q Consensus 406 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 481 (890)
...|+..|++++|++.+.... +......=+..+.+..+.+-|.+.+++|.+.. +..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344555666666666554411 11122222233344455555555555555431 33444444444332
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCC
Q 002701 482 EVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGC 554 (890)
Q Consensus 482 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 554 (890)
.+++.+|.-+|++|.++ .+|++.+.+....++...|++++|..++++.+.+.. -+..+...+|-.-...|.
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGK 256 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCC
Confidence 33455555555555543 445555555555555555555555555555555432 233444444433333333
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-05 Score=72.27 Aligned_cols=104 Identities=15% Similarity=0.035 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002701 749 QITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQY 828 (890)
Q Consensus 749 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 828 (890)
......+...+...|++++|...++.+.+..|.+...+..++..+.+.|++++|.+.+++..+.+ +.+...+..++.++
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 34445556666677777777777777777666677777777777777777777777777776642 23446666677777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 002701 829 CKRGYLHEALKLWDSMLNKGLKPDPLA 855 (890)
Q Consensus 829 ~~~g~~~~A~~~~~~~~~~g~~p~~~~ 855 (890)
...|++++|...+++.++ +.|+...
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 96 LALGEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred HHcCCHHHHHHHHHHHHH--hccccch
Confidence 777777777777777777 5565444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.1e-06 Score=73.40 Aligned_cols=111 Identities=16% Similarity=0.085 Sum_probs=96.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 002701 770 QLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGL 849 (890)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 849 (890)
..++.++...|.+......++..+...|++++|...++++...+ +.+...+..++.++...|++++|..++++.++ .
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~ 80 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA--L 80 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence 35667777667777888889999999999999999999998853 33668889999999999999999999999988 5
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002701 850 KP-DPLAYNFLIYGCCIRGEITKAFELRDDMMRRG 883 (890)
Q Consensus 850 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 883 (890)
.| +...+..++..|...|++++|.+.+++.++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 66 67888999999999999999999999999754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.7e-05 Score=76.51 Aligned_cols=140 Identities=20% Similarity=0.143 Sum_probs=105.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002701 723 GLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEA 802 (890)
Q Consensus 723 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 802 (890)
.+...|.+++|+..++.+++. .+.|...+....+.+.+.++.++|.+.+++++...|........++.+|.+.|++.+|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 345778888888888888765 3445555666677888888888888888888887777778888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 803 TKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRR 882 (890)
Q Consensus 803 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 882 (890)
+.+++..... .+-|...|..|.++|...|+..+|....- ..|.-.|++++|+..+....+.
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 8888888764 34466888888888888888777665443 3455677777777777777654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00045 Score=65.06 Aligned_cols=157 Identities=18% Similarity=0.136 Sum_probs=103.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 002701 684 SMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTR-- 761 (890)
Q Consensus 684 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 761 (890)
.-...|.+.|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+- .+..|.+.|+.++.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLA 183 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHh
Confidence 33445667788888877766521 2233333344566777788888888888642 355666666666543
Q ss_pred --cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HH
Q 002701 762 --EGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHE-AL 838 (890)
Q Consensus 762 --~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~ 838 (890)
.+.++.|.-+|+++.+..+|++.+.+..+.+....|++++|..++++++.+. ..++.++..++-+-...|...+ -.
T Consensus 184 ~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHH
Confidence 4467788888888888888888888888888888888888888888888753 3356677666666666665443 44
Q ss_pred HHHHHHHhCCCCCC
Q 002701 839 KLWDSMLNKGLKPD 852 (890)
Q Consensus 839 ~~~~~~~~~g~~p~ 852 (890)
+.+.++.. ..|+
T Consensus 263 r~l~QLk~--~~p~ 274 (299)
T KOG3081|consen 263 RNLSQLKL--SHPE 274 (299)
T ss_pred HHHHHHHh--cCCc
Confidence 55555555 4454
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00011 Score=75.50 Aligned_cols=191 Identities=18% Similarity=0.150 Sum_probs=142.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 002701 641 NMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTAL 720 (890)
Q Consensus 641 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 720 (890)
.|+...+...+.+.........+..++-+..+ ..-...-|..-+..| ..|++++|+..++.++..- +.|+..+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQTY-LAGQYDEALKLLQPLIAAQ-PDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHHHH-HhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45556666666655443333333333332222 122334455555544 7899999999999998873 3456666677
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 002701 721 INGLCKAGYMDKAELLCKEMLASGSLPN-QITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKF 799 (890)
Q Consensus 721 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 799 (890)
.+.+...|+.++|.+.+++++.. .|+ ......+..++.+.|++++|+.+++......|.|+..|..|+.+|...|+.
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 88999999999999999999975 565 666778889999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 002701 800 EEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAY 856 (890)
Q Consensus 800 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 856 (890)
.+|.....+ .+.-.|++++|+..+....+. ..++...|
T Consensus 425 ~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 425 AEALLARAE------------------GYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred HHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 888766544 456779999999999998874 33444444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-05 Score=71.24 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=78.5
Q ss_pred hcCCHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 002701 761 REGKMEKAVQLHNAMLDGLLAN---TVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC--ITYSTIIYQYCKRGYLH 835 (890)
Q Consensus 761 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~ 835 (890)
..++...+...++.+.+..|.+ ......++..+...|++++|...|+.+......|+. .....|...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4667777777777777755555 334445667777788888888888888775422221 34456677788888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 836 EALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDM 879 (890)
Q Consensus 836 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 879 (890)
+|+..++.... -...+..+..+++.|.+.|++++|+..|++.
T Consensus 103 ~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88888766433 1224455666777788888888888887764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.1e-05 Score=77.15 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=55.3
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002701 758 YLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEA 837 (890)
Q Consensus 758 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 837 (890)
.+...++++.|+.+++++.+.. |+ ....++..+...++-.+|++++++.+.. .+-+...+..-+..|...++++.|
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~-pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERD-PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcC-Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3334444555555555544422 11 2223444444445555555555555532 111333444444445555555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 838 LKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDDMM 880 (890)
Q Consensus 838 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 880 (890)
+++++++.+ ..| +..+|..|+.+|.+.|++++|+-.++.+-
T Consensus 254 L~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 254 LEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555555 445 34455555555555555555555554443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.2e-05 Score=67.02 Aligned_cols=94 Identities=11% Similarity=-0.078 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002701 752 YGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKR 831 (890)
Q Consensus 752 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 831 (890)
...+...+...|++++|..+|+......|.+...|..|+-++...|++++|+..|..+.... +.|+..+-.++.++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 33444455666777777777776666666666666777777766777777777777766632 12446666666777777
Q ss_pred CCHHHHHHHHHHHHh
Q 002701 832 GYLHEALKLWDSMLN 846 (890)
Q Consensus 832 g~~~~A~~~~~~~~~ 846 (890)
|+.+.|.+.|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777766665
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00011 Score=76.51 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002701 685 MIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGK 764 (890)
Q Consensus 685 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 764 (890)
++..+...++++.|..+|+++.+.. |++. ..++..+...++-.+|++++++.++. .+.+...+..-...+...++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 3334444445555555555555442 3322 22444444444445555555555433 12233334444444445555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 765 MEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMM 810 (890)
Q Consensus 765 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 810 (890)
++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+.
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555555444445555555555555555555555554443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.016 Score=59.16 Aligned_cols=150 Identities=11% Similarity=0.105 Sum_probs=86.1
Q ss_pred HHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHH-HHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHHH-h
Q 002701 105 FCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFD-SLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLMR-E 182 (890)
Q Consensus 105 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~ 182 (890)
.|.-+-+|-+++++.+|..+|.++....-+....+. .+ .-..++++|+..+-- .-........ .
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEv-------------l~grilnAffl~nld-~Me~~l~~l~~~ 74 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEV-------------LGGRILNAFFLNNLD-LMEKQLMELRQQ 74 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHH-------------HhhHHHHHHHHhhHH-HHHHHHHHHHHh
Confidence 345566788999999999999999876554444332 22 223456666655422 2222222222 2
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC------------CCHHHHHHHHHHHHccCChhhHHHHHH
Q 002701 183 KHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNV--GIL------------PDIYIHSAVMRSLCELKDFVKAKEMIH 248 (890)
Q Consensus 183 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (890)
.|-.+-..-+-.+. ..+.+.++.|.+.+..=.+. +.. +|-..-++.++++.+.|++.+++.+++
T Consensus 75 ~~~s~~l~LF~~L~--~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 75 FGKSAYLPLFKALV--AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred cCCchHHHHHHHHH--HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 22222222222222 56778888888777655443 211 233344566778888888888888887
Q ss_pred HHHhCC----CCCChhhHHHHHHHHH
Q 002701 249 FMDSNG----SDLNVVVYNILIHGLC 270 (890)
Q Consensus 249 ~~~~~~----~~~~~~~~~~li~~~~ 270 (890)
+|...= +.-++.+||.++-.+.
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 776542 2346677777554443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00012 Score=66.11 Aligned_cols=124 Identities=16% Similarity=0.149 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---HHHHHHHH
Q 002701 717 YTALINGLCKAGYMDKAELLCKEMLASGSLPN---QITYGCFLDYLTREGKMEKAVQLHNAMLDGLLAN---TVTYNILI 790 (890)
Q Consensus 717 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~ 790 (890)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.++...+.+ ......|+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34444444 4677777777777777652 222 2344455677777888888888888888733222 23455577
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 791 HGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSM 844 (890)
Q Consensus 791 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 844 (890)
..+...|++++|+..++..... ......+...+..+.+.|++++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7888888888888888664432 223355667788888888888888888765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0011 Score=58.82 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 002701 746 LPNQITYGCFLDYLTREGKMEKAVQLHNAMLD-GLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD---CITY 821 (890)
Q Consensus 746 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 821 (890)
-|+...-..|..+..+.|+..+|...|++.+. .+..|......+.++....+++.+|...++++.+.+ |+ +.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 45555555666777777777777777777777 455666677777777777777777777777776642 21 2334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 822 STIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDM 879 (890)
Q Consensus 822 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 879 (890)
..+.+.|...|++.+|...|+.+++ .-|++..-......+.++|+..+|..-+.++
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4566677777777777777777777 6666666656666667777666665544443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.2e-05 Score=62.94 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 002701 796 MGKFEEATKLLGGMMDNGI-LPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAF 873 (890)
Q Consensus 796 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 873 (890)
.|++++|+.+++++.+... .|+...+..++.+|.+.|++++|+.++++ .+ ..| +......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4677778888877776322 12344555677788888888888888777 33 334 3345555677788888888888
Q ss_pred HHHHH
Q 002701 874 ELRDD 878 (890)
Q Consensus 874 ~~~~~ 878 (890)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.032 Score=57.15 Aligned_cols=284 Identities=14% Similarity=0.129 Sum_probs=156.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 002701 162 QSYVQNKRVADGVFVFRLMREK-HLMPE----VRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCE 236 (890)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (890)
-.+-+++++.+|..+|.++-.. .-.|. ....+.++++++. ++.+.-.....+..+.. +...+..--..-...+
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~-~~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF-GKSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHH
Confidence 3456789999999999998432 22222 2346778888775 56677666666665543 2333333333444568
Q ss_pred cCChhhHHHHHHHHHhC--CCCC------------ChhhHHHHHHHHHccCChhHHHHHHHHHHHCCCC----CCHHhHH
Q 002701 237 LKDFVKAKEMIHFMDSN--GSDL------------NVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVK----ADVVTYC 298 (890)
Q Consensus 237 ~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~ 298 (890)
.|.+.+|.+.+....+. +..+ +.+.-+..++.+.+.|++.|+..+++++..+-++ -+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 89999999998877655 2221 2223366677888999999999999998876444 6777887
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHh--
Q 002701 299 TLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCK-- 376 (890)
Q Consensus 299 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 376 (890)
.++-.+.+ .+|-++++.....=-.-|+.++..|.+.=..-++.. + ..+.|.......++.-..-
T Consensus 172 ~~vlmlsr--------SYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~-Y-----~k~~peeeL~s~imqhlfi~p 237 (549)
T PF07079_consen 172 RAVLMLSR--------SYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRP-Y-----EKFIPEEELFSTIMQHLFIVP 237 (549)
T ss_pred HHHHHHhH--------HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhch-H-----HhhCcHHHHHHHHHHHHHhCC
Confidence 75544433 344455433222122235666666654322222211 1 1122433333333332221
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcCChh
Q 002701 377 ERKFNEAEFLFNEMKQKGLSPNVV-TYSILIDSLCRRGEMDIAVSFLGKMADEGIKA----TIYPYNSLISGHCKLGNLS 451 (890)
Q Consensus 377 ~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~ 451 (890)
..+..--.++++...+.-+.|+.. ....|+..+.+ +.+++..+-+.+....+.+ =+.++..++....+.++..
T Consensus 238 ~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~ 315 (549)
T PF07079_consen 238 KERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTE 315 (549)
T ss_pred HhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 122222334444444444555532 22333333333 4555555555444332111 1235666666677777777
Q ss_pred HHHHHHHHHHHc
Q 002701 452 AAESFFEEMIHK 463 (890)
Q Consensus 452 ~A~~~~~~~~~~ 463 (890)
.|.+.+.-+...
T Consensus 316 ~a~q~l~lL~~l 327 (549)
T PF07079_consen 316 EAKQYLALLKIL 327 (549)
T ss_pred HHHHHHHHHHhc
Confidence 777777666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00015 Score=59.99 Aligned_cols=90 Identities=22% Similarity=0.324 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 002701 788 ILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIR 866 (890)
Q Consensus 788 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 866 (890)
.++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.+++..+ ..| +...+..++..+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHHH
Confidence 34444444555555555555544421 11223444444455555555555555555444 223 223444444555555
Q ss_pred CCHHHHHHHHHHHH
Q 002701 867 GEITKAFELRDDMM 880 (890)
Q Consensus 867 g~~~~A~~~~~~m~ 880 (890)
|++++|...+++..
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0009 Score=58.86 Aligned_cols=91 Identities=8% Similarity=-0.104 Sum_probs=47.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 002701 720 LINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKF 799 (890)
Q Consensus 720 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 799 (890)
+...+...|++++|..+|+-+..-. +-+..-|..|.-++...|++++|+..|..+....|.|+..+..++.++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 3334445555555555555554321 123344444555555555555555555555554455555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 002701 800 EEATKLLGGMMD 811 (890)
Q Consensus 800 ~~A~~~~~~~~~ 811 (890)
+.|.+.|+.++.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00027 Score=61.45 Aligned_cols=94 Identities=14% Similarity=0.090 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHH
Q 002701 753 GCFLDYLTREGKMEKAVQLHNAMLDGLLAN---TVTYNILIHGFCTMGKFEEATKLLGGMMDNGIL-P-DCITYSTIIYQ 827 (890)
Q Consensus 753 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~ 827 (890)
..++..+.+.|++++|...+..+++..|.+ ...+..++.++.+.|++++|...++++...... | ...++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 334444455555555555555555433222 234444555555555555555555555542111 0 12344555555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 002701 828 YCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 828 ~~~~g~~~~A~~~~~~~~~ 846 (890)
+.+.|+.++|...++++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 5555555555555555555
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00015 Score=63.10 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHH
Q 002701 784 VTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD----CITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD----PLA 855 (890)
Q Consensus 784 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~ 855 (890)
.++..++..+.+.|++++|.+.++++.+. .|+ ...+..++.++.+.|++++|..++++++. ..|+ ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--KYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HCCCCCcccHH
Confidence 46778888999999999999999999874 233 35677799999999999999999999998 4453 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002701 856 YNFLIYGCCIRGEITKAFELRDDMMRRG 883 (890)
Q Consensus 856 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g 883 (890)
+..++.++.+.|++++|.+.++++++..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 8888899999999999999999999774
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0063 Score=61.25 Aligned_cols=85 Identities=18% Similarity=0.098 Sum_probs=41.8
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 002701 691 KAGNLKEAFRLWDIMIGE---GCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPN-QITYGCFLDYLTREGKME 766 (890)
Q Consensus 691 ~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 766 (890)
+.|++..|.+.|.+.+.. ...|+...|........+.|+.++|+.--++.++. .|. ...+..-..++...++|+
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655543 12233444444444555556666666555555422 111 122223334444455556
Q ss_pred HHHHHHHHHhc
Q 002701 767 KAVQLHNAMLD 777 (890)
Q Consensus 767 ~A~~~~~~~~~ 777 (890)
+|.+-|+++.+
T Consensus 339 ~AV~d~~~a~q 349 (486)
T KOG0550|consen 339 EAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHh
Confidence 66665555555
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0046 Score=62.22 Aligned_cols=278 Identities=13% Similarity=0.048 Sum_probs=161.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 002701 160 LIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKD 239 (890)
Q Consensus 160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (890)
.+..+.+...|.+|+..+..+.+..+. ++..|..-+..+...|+++.|.--.++-++.. .-....+.-..+++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence 456778888888999888888877655 46666666667777788888887777666543 2222233334444444444
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHCCC-CCCHHhHHHHH-HHHHccCChHHHHHHH
Q 002701 240 FVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGV-KADVVTYCTLV-LGLCKVQEFEFGVWLM 317 (890)
Q Consensus 240 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll-~~~~~~~~~~~A~~~~ 317 (890)
..+|.+.++ |...| ....|+..++....... +|.-.++..+- .++.-.|++++|...-
T Consensus 133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 444444443 11111 12223333333333322 23344454443 3445678888888777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHH-------------HHHHHHHHHHhcCChhHHH
Q 002701 318 NEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLF-------------VYNALINSLCKERKFNEAE 384 (890)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------~~~~li~~~~~~g~~~~A~ 384 (890)
..+++... .+......=+.++.-.++.+.|...|++..+.+ |+.. .+..-.+-..+.|++..|.
T Consensus 193 ~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 193 IDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 76666532 344444445556667788888888888887755 3322 2223334456777888888
Q ss_pred HHHHHHHHCC---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 002701 385 FLFNEMKQKG---LSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMI 461 (890)
Q Consensus 385 ~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 461 (890)
+.|.+.+... ..|+...|........+.|+..+|+.--+...+.+.. -+..+..-..++...++|++|.+-+++..
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777642 2333445656666666777777777777766654210 11223333344455667777777777766
Q ss_pred Hc
Q 002701 462 HK 463 (890)
Q Consensus 462 ~~ 463 (890)
+.
T Consensus 349 q~ 350 (486)
T KOG0550|consen 349 QL 350 (486)
T ss_pred hh
Confidence 54
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00027 Score=74.25 Aligned_cols=92 Identities=17% Similarity=0.069 Sum_probs=62.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 002701 757 DYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYLH 835 (890)
Q Consensus 757 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 835 (890)
..+...|++++|+..|+++++..|.+...|..++.+|.+.|++++|+..++++++. .| +...|..++.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 34456667777777777777766666777777777777777777777777777663 34 3456666677777777777
Q ss_pred HHHHHHHHHHhCCCCCC
Q 002701 836 EALKLWDSMLNKGLKPD 852 (890)
Q Consensus 836 ~A~~~~~~~~~~g~~p~ 852 (890)
+|+..++++++ +.|+
T Consensus 88 eA~~~~~~al~--l~P~ 102 (356)
T PLN03088 88 TAKAALEKGAS--LAPG 102 (356)
T ss_pred HHHHHHHHHHH--hCCC
Confidence 77777777776 5563
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00025 Score=58.59 Aligned_cols=95 Identities=20% Similarity=0.267 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002701 751 TYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCK 830 (890)
Q Consensus 751 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 830 (890)
++..++..+...|++++|...++.+.+..|.+...+..++..+...|++++|.+.+++..... +.+..++..++..+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 356677888899999999999999999777788889999999999999999999999998753 2344688899999999
Q ss_pred cCCHHHHHHHHHHHHh
Q 002701 831 RGYLHEALKLWDSMLN 846 (890)
Q Consensus 831 ~g~~~~A~~~~~~~~~ 846 (890)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999999999887
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.82 E-value=3e-05 Score=49.87 Aligned_cols=33 Identities=48% Similarity=0.849 Sum_probs=23.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 002701 261 VYNILIHGLCKSQRVFEAVEVKNGFVKRGVKAD 293 (890)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 293 (890)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.5e-05 Score=50.27 Aligned_cols=33 Identities=45% Similarity=0.857 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC
Q 002701 366 VYNALINSLCKERKFNEAEFLFNEMKQKGLSPN 398 (890)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 398 (890)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.8e-05 Score=60.98 Aligned_cols=79 Identities=24% Similarity=0.287 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 002701 762 EGKMEKAVQLHNAMLDGLLA--NTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGYLHEAL 838 (890)
Q Consensus 762 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~ 838 (890)
.|+++.|+.+++++++..|. +...+..++.+|.+.|++++|+.++++ .. ..|+. .....++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666666666653331 344444466666666666666666665 21 22222 33334466666666666666
Q ss_pred HHHHH
Q 002701 839 KLWDS 843 (890)
Q Consensus 839 ~~~~~ 843 (890)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00068 Score=67.61 Aligned_cols=217 Identities=14% Similarity=0.020 Sum_probs=114.4
Q ss_pred HHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHH----HhCC
Q 002701 109 IHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLM----REKH 184 (890)
Q Consensus 109 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~ 184 (890)
+..|+++|+......+|+.++..+...-..+ +.+|.-|+++|+-.++|++|+++...= +..|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tL--------------SAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg 89 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTL--------------SAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG 89 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHH--------------HHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc
Confidence 4679999999999999999998775433322 235667899999999999999864321 1111
Q ss_pred CC-CCHhhHHHHHHHHHhcCChhHHHHHHHHH----HHCCC-CCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCC
Q 002701 185 LM-PEVRTLSGVLNGLVKIRQFGLVLKLFEDV----VNVGI-LPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLN 258 (890)
Q Consensus 185 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 258 (890)
-. -.+.++..+.+.+--.|.|++|.-.-.+- .+.|- .....+++-+.++|...|+--.-.. -.+.|-.+.
T Consensus 90 dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ 165 (639)
T KOG1130|consen 90 DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNA 165 (639)
T ss_pred chhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccH
Confidence 11 23445556666666667777776443222 12221 1122345555666655554211000 000011111
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHH----CCC-CCCHHhHHHHHHHHHccCChHHHHHHHHHHHH----cCCC-CC
Q 002701 259 VVVYNILIHGLCKSQRVFEAVEVKNGFVK----RGV-KADVVTYCTLVLGLCKVQEFEFGVWLMNEMIE----LGLV-PS 328 (890)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~-~~ 328 (890)
.++ . .++.|.++|.+-.+ .|- -.--..|..|.+.|+-.|+++.|+...++-+. .|.. ..
T Consensus 166 ev~-~----------al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae 234 (639)
T KOG1130|consen 166 EVT-S----------ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE 234 (639)
T ss_pred HHH-H----------HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 111 0 11223333322111 110 01123566666667777788887776655332 2221 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 329 EAAVSSLVEGFRRKGKIDDAFNLVNK 354 (890)
Q Consensus 329 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 354 (890)
..++..+++++.-.|+++.|.+.|+.
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHH
Confidence 34566666666666666666666654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0013 Score=61.48 Aligned_cols=129 Identities=16% Similarity=0.076 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002701 714 VVTYTALINGLCKAGYMDKAELLCKEMLASGSLPN--QITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIH 791 (890)
Q Consensus 714 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 791 (890)
...+..+...+...|++++|...|++.++....+. ...+..+...+.+.|++++|+..+.++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 33456666667777888888887777775432222 3466667777777788888888888777766667777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 002701 792 GFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRG 867 (890)
Q Consensus 792 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 867 (890)
.+...|+...+..-++.+.. .+++|.+.++++.. ..|+. |..++.-+...|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~--~~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR--LAPNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh--hCchh--HHHHHHHHHhcC
Confidence 77777776655544443321 15667777777766 55543 434444343333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00027 Score=70.27 Aligned_cols=133 Identities=17% Similarity=0.117 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCH
Q 002701 750 ITYGCFLDYLTREGKMEKAVQLHNAMLD---GLL---ANTVTYNILIHGFCTMGKFEEATKLLGGMMD----NGIL-PDC 818 (890)
Q Consensus 750 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~ 818 (890)
..|..|.+.|.-.|+++.|+...+.-+. .+. .-..++..|++++.-.|+++.|.+.|+.... .|-. ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3456666667778889998887776543 111 1234677788888888999999988887653 2221 223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 819 ITYSTIIYQYCKRGYLHEALKLWDSMLNK-----GLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRR 882 (890)
Q Consensus 819 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 882 (890)
....+|+..|.-..++++|+.++.+-+.. ........+.+|..++...|..++|..+.+.-++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45567888888888889998888764431 12335677888888999999999998888776643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0017 Score=71.29 Aligned_cols=141 Identities=17% Similarity=0.124 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHHh
Q 002701 711 VPNVVTYTALINGLCKA-----GYMDKAELLCKEMLASGSLPN-QITYGCFLDYLTRE--------GKMEKAVQLHNAML 776 (890)
Q Consensus 711 ~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 776 (890)
+.+...|...+.+.... +..++|..+|++.++. .|+ ...|..+..++... ++.+.+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 44555565555543321 1245666666666654 343 23333332222111 12344555555544
Q ss_pred c--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 002701 777 D--GLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPL 854 (890)
Q Consensus 777 ~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 854 (890)
. ..+.++.+|..++-.....|++++|...++++++ +.|+...|..++..+...|+.++|...++++.. +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 4 3566677888887777778999999999999998 457888889999999999999999999999988 788655
Q ss_pred HHH
Q 002701 855 AYN 857 (890)
Q Consensus 855 ~~~ 857 (890)
+|.
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=64.03 Aligned_cols=127 Identities=17% Similarity=0.097 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHH
Q 002701 730 MDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTM---GKFEEATKLL 806 (890)
Q Consensus 730 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~ 806 (890)
.++...-++.-+..+ +-|...|..|...|...|+++.|...|.++.+..|+|+..+..++.++..+ ....++..++
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 445555555555442 457788888888888888888888888888887788888888887776554 3467788888
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002701 807 GGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIY 861 (890)
Q Consensus 807 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 861 (890)
++++.. .| |..+...|...+...|++.+|...|+.|++ ..|....+..++.
T Consensus 217 ~~al~~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~ie 268 (287)
T COG4235 217 RQALAL--DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLIE 268 (287)
T ss_pred HHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHHH
Confidence 888873 44 446667777888888888888888888888 5554444555543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00094 Score=62.32 Aligned_cols=90 Identities=14% Similarity=0.045 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 002701 750 ITYGCFLDYLTREGKMEKAVQLHNAMLDG--LLA-NTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILP-DCITYSTII 825 (890)
Q Consensus 750 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 825 (890)
..+..+...+...|++++|...|+++++. .++ ....+..++..+.+.|++++|+..++++.+. .| +...+..++
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 34555666666677777777777777651 112 1356666777777777777777777777663 33 334555666
Q ss_pred HHHHhcCCHHHHHHHH
Q 002701 826 YQYCKRGYLHEALKLW 841 (890)
Q Consensus 826 ~~~~~~g~~~~A~~~~ 841 (890)
.++...|+...+...+
T Consensus 114 ~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHcCChHhHhhCH
Confidence 6666665544444333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.085 Score=53.98 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 002701 679 NVIYTSMIDAKGKAGNLKEAFRLWDIMIGEG-CVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQIT-YGCFL 756 (890)
Q Consensus 679 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~ 756 (890)
..+|...+.+..+..-++.|..+|-++.+.+ ..+++..+++++..++ .|+..-|..+|+--+.. -||... -+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456667777777777888888888888877 5677888888888765 57778888888876654 344333 34556
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 757 DYLTREGKMEKAVQLHNAMLDGLLAN--TVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 757 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
..+..-++-+.|..+|+..+..+..+ ...|..++.--..-|+...+..+-+++.+
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 66677888888888888777644444 56788888877788888888877777776
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0016 Score=63.50 Aligned_cols=101 Identities=12% Similarity=0.135 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC-CH
Q 002701 778 GLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRG---YLHEALKLWDSMLNKGLKP-DP 853 (890)
Q Consensus 778 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~~ 853 (890)
..|.|...|..|+..|...|+.+.|...|.++.+. ..++...+..+..++.... ...++..++++++. .+| |.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~i 227 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANI 227 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccH
Confidence 34445555555555555555555555555555442 1122233444444433322 23344555555554 444 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 854 LAYNFLIYGCCIRGEITKAFELRDDMMR 881 (890)
Q Consensus 854 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 881 (890)
.+...|...+...|++.+|...++.|++
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444444445555555555555555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0005 Score=66.31 Aligned_cols=99 Identities=22% Similarity=0.162 Sum_probs=46.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 002701 691 KAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLP-NQITYGCFLDYLTREGKMEKAV 769 (890)
Q Consensus 691 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 769 (890)
+.+++++|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+.. .| -..+|..|..+|...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHH
Confidence 4455555555555555442 223444444444555555555555555444432 22 2334455555555555555555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHH
Q 002701 770 QLHNAMLDGLLANTVTYNILIHG 792 (890)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~l~~~ 792 (890)
+.|+++++..|.|......|-.+
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHH
Confidence 55555555444444444443333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0062 Score=59.98 Aligned_cols=185 Identities=11% Similarity=0.012 Sum_probs=103.2
Q ss_pred cHhHHHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 002701 101 STASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLM 180 (890)
Q Consensus 101 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 180 (890)
+.......+..+...|++++|...|+.++...|...... .+...|+.+|.+.+++++|+..|++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~---------------~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQ---------------QVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH---------------HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455566777777888888888888888887776543321 12344778888888888888888888
Q ss_pred HhCCCC-CCHhhHHHHHHHHH--hcC---------------C---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 002701 181 REKHLM-PEVRTLSGVLNGLV--KIR---------------Q---FGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKD 239 (890)
Q Consensus 181 ~~~~~~-~~~~~~~~l~~~~~--~~~---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (890)
....+. |++ -+...+.+++ ..+ + ...|...|+++++.= |+. .-
T Consensus 96 i~~~P~~~~~-~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S-------------~y 159 (243)
T PRK10866 96 IRLNPTHPNI-DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNS-------------QY 159 (243)
T ss_pred HHhCcCCCch-HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCC-------------hh
Confidence 665443 333 2222222221 111 1 123445555555442 221 12
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 002701 240 FVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKR--GVKADVVTYCTLVLGLCKVQEFEFGVWLM 317 (890)
Q Consensus 240 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 317 (890)
..+|...+..+... =..---.+...|.+.|.+..|+.-++.+++. +.+........++.+|...|..++|..+.
T Consensus 160 a~~A~~rl~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 160 TTDATKRLVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 23333333333211 0000113344577777777777777777765 23334445666677777777777777766
Q ss_pred HHH
Q 002701 318 NEM 320 (890)
Q Consensus 318 ~~~ 320 (890)
..+
T Consensus 236 ~~l 238 (243)
T PRK10866 236 KII 238 (243)
T ss_pred HHH
Confidence 544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.025 Score=57.66 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=25.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCc-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002701 370 LINSLCKERKFNEAEFLFNEMKQKGLSP-----NVV-TYSILIDSLCRRGEMDIAVSFLGKMADE 428 (890)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 428 (890)
+...+.+.|++++|.++|++........ +.. .+...+-++...|++..|...+++....
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444555556666666555554432111 111 1222233344455666666666655443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0011 Score=69.59 Aligned_cols=96 Identities=13% Similarity=0.000 Sum_probs=73.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 002701 721 INGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFE 800 (890)
Q Consensus 721 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 800 (890)
...+...|++++|++.|++.++.. +.+...|..+..++...|++++|+..++.+++..|.+...|..++.+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344557788888888888888653 3456677777788888888888888888888877778888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 002701 801 EATKLLGGMMDNGILPDCI 819 (890)
Q Consensus 801 ~A~~~~~~~~~~~~~p~~~ 819 (890)
+|+..|+++++ +.|+..
T Consensus 88 eA~~~~~~al~--l~P~~~ 104 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDS 104 (356)
T ss_pred HHHHHHHHHHH--hCCCCH
Confidence 88888888887 445543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.013 Score=52.16 Aligned_cols=134 Identities=14% Similarity=0.096 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCHHHHHH
Q 002701 711 VPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLL--ANTVTYNI 788 (890)
Q Consensus 711 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~ 788 (890)
.|++..-..|..++...|+..+|...|++...--+--|......+.++....+++.+|...++++.+-.| .++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 5788888889999999999999999999998754556888888899999999999999999999887222 23445566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 789 LIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 789 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
+++.|...|++++|...|+.+.. .-|+...-......+.+.|+.++|..-+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 78899999999999999999998 456665555556667888888887766665554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.094 Score=56.56 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHcCCChHHH
Q 002701 518 NKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVAD----TYTYRSLITGLCSAGRVSEA 593 (890)
Q Consensus 518 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a 593 (890)
|++++|.+++-+|-.++ ..|..+.+.|++-...++++.- |-..| ..+++.+...+.....+++|
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665544332 1234444555555444444321 10111 13444555555555555555
Q ss_pred HHHHH
Q 002701 594 KEFVD 598 (890)
Q Consensus 594 ~~~~~ 598 (890)
.+.+.
T Consensus 816 ~~yY~ 820 (1189)
T KOG2041|consen 816 AKYYS 820 (1189)
T ss_pred HHHHH
Confidence 55443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.61 E-value=9.8e-05 Score=47.00 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 002701 260 VVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKA 292 (890)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 292 (890)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0012 Score=61.41 Aligned_cols=95 Identities=22% Similarity=0.140 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 002701 783 TVTYNILIHGFCTMGKFEEATKLLGGMMDNGILP--DCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFL 859 (890)
Q Consensus 783 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 859 (890)
...|..++..+...|++++|+..++++......| ...+|..++..+...|++++|+..++++++ +.| ....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 4455666666777777777777777776532122 124667777777777777777777777776 455 34445555
Q ss_pred HHHHH-------hcCCHHHHHHHHHHH
Q 002701 860 IYGCC-------IRGEITKAFELRDDM 879 (890)
Q Consensus 860 ~~~~~-------~~g~~~~A~~~~~~m 879 (890)
+..+. ..|++++|...+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 55555 677777555555544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0016 Score=66.03 Aligned_cols=128 Identities=9% Similarity=0.049 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002701 717 YTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTR-EGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCT 795 (890)
Q Consensus 717 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 795 (890)
|..+++...+.+..+.|..+|.+..+.+ ..+..+|...+..-.. .++.+.|..+|+..++.++.+...|...++.+.+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4444444444444555555555554221 1122223322222112 3344445555555555444555555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 796 MGKFEEATKLLGGMMDNGILPDC---ITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 796 ~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
.|+.+.|..+|++.+.. +.++. ..|...+.--.+.|+.+...++.+++.+
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555442 22111 3455555555555555555555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0036 Score=68.77 Aligned_cols=138 Identities=14% Similarity=0.046 Sum_probs=106.3
Q ss_pred CCCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHH
Q 002701 744 GSLPNQITYGCFLDYLTR--E---GKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMG--------KFEEATKLLGGMM 810 (890)
Q Consensus 744 ~~~p~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~ 810 (890)
..+.|...|..++.+... . ++.+.|+.+|+++++..|.+...|..++.++.... ++..+.+..++..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 456677888888776532 2 34789999999999988999888888777664431 2344555555544
Q ss_pred HCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002701 811 DNG-ILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRG 883 (890)
Q Consensus 811 ~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 883 (890)
... ...+..+|..+.-.....|++++|...++++++ +.|+...|..++..+...|+.++|.+.++++.+..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 421 233457788887777788999999999999999 78998999999999999999999999999998654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.5e-05 Score=47.05 Aligned_cols=33 Identities=39% Similarity=0.635 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 002701 365 FVYNALINSLCKERKFNEAEFLFNEMKQKGLSP 397 (890)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 397 (890)
.+|+.++.++++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356677777777777777777777777666665
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.013 Score=57.83 Aligned_cols=53 Identities=8% Similarity=-0.001 Sum_probs=28.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 371 INSLCKERKFNEAEFLFNEMKQKGLSPN----VVTYSILIDSLCRRGEMDIAVSFLGKM 425 (890)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 425 (890)
...|.+.|.+..|..-|+.+.+. .|+ ......++.+|...|..++|......+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRD--YPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455566666666666666554 222 234455566666666666666555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=69.23 Aligned_cols=120 Identities=15% Similarity=0.149 Sum_probs=74.5
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHH
Q 002701 293 DVVTYCTLVLGLCKVQEFEFGVWLMNEMIEL--GLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNAL 370 (890)
Q Consensus 293 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 370 (890)
+......+++.+....+++.+..++...... ....-+.+...+++.|.+.|..++++.+++.=...|+-||.+++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3333444444444444444444444444333 22223344456777777777777777777777777777777788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 002701 371 INSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRR 412 (890)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 412 (890)
++.+.+.|++..|.++...|...+...+..|+..-+.++.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888877777777777666665666666666655543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00035 Score=53.48 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 002701 783 TVTYNILIHGFCTMGKFEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRG-YLHEALKLWDSMLN 846 (890)
Q Consensus 783 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 846 (890)
+.+|..++..+...|++++|+..|+++++. .| +...|..++.++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444444455555555555555554442 22 2244444444444444 34555555544444
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0017 Score=60.35 Aligned_cols=80 Identities=6% Similarity=-0.139 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002701 155 LGFDLLIQSYVQNKRVADGVFVFRLMREKHLMP--EVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMR 232 (890)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 232 (890)
..|..++..+...|++++|+..|+++......+ ...++..+..++.+.|++++|...|+++.... +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 456667788888888888888888886554332 23467777778888888888888888887764 444555666666
Q ss_pred HHH
Q 002701 233 SLC 235 (890)
Q Consensus 233 ~~~ 235 (890)
++.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 666
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.14 Score=52.54 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002701 714 VVTYTALINGLCKAGYMDKAELLCKEMLASG-SLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHG 792 (890)
Q Consensus 714 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 792 (890)
...|...++.-.+..-++.|..+|-+..+.+ ..+++.++++++..+ ..|+...|..+|+.-+...+.+...-+..+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4467777887778888999999999999888 567888899998866 46889999999999888888888777788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 002701 793 FCTMGKFEEATKLLGGMMDNGILPD--CITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDP 853 (890)
Q Consensus 793 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 853 (890)
+...++-+.|..+|+..+++ +..+ ..+|..++.--..-|+...+..+=+++.+ +.|..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQe 535 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQE 535 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcH
Confidence 88999999999999977654 3333 36899999998999999999999888888 66644
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0029 Score=53.75 Aligned_cols=90 Identities=22% Similarity=0.256 Sum_probs=50.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---H-HHHHHHHHH
Q 002701 755 FLDYLTREGKMEKAVQLHNAMLD-GLLAN--TVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD---C-ITYSTIIYQ 827 (890)
Q Consensus 755 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~-~~~~~l~~~ 827 (890)
...++-..|+.++|+.+|++.+. +.... ...+..++..+...|++++|+.++++.... .|+ . .....+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 44455566666666666666666 43332 334555666666666666666666666653 132 1 222333445
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 002701 828 YCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 828 ~~~~g~~~~A~~~~~~~~~ 846 (890)
+...|+.++|+..+-..+.
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5666666666666655443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0051 Score=59.01 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=50.8
Q ss_pred cHhHHHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 002701 101 STASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLM 180 (890)
Q Consensus 101 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 180 (890)
+.......+..+...|++.+|...|+.++...|...-. ..+...++.+|.+.|++++|...|++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a---------------~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA---------------PQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667788888999999999999999988877654332 234556888899999999999999888
Q ss_pred HhCCCC
Q 002701 181 REKHLM 186 (890)
Q Consensus 181 ~~~~~~ 186 (890)
...-+.
T Consensus 69 i~~yP~ 74 (203)
T PF13525_consen 69 IKLYPN 74 (203)
T ss_dssp HHH-TT
T ss_pred HHHCCC
Confidence 664433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00049 Score=51.88 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=23.6
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 759 LTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 759 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
+...|++++|+..|+.+++..|.+...+..++.++...|++++|...|+++++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00015 Score=44.88 Aligned_cols=29 Identities=45% Similarity=0.681 Sum_probs=15.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 002701 261 VYNILIHGLCKSQRVFEAVEVKNGFVKRG 289 (890)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 289 (890)
+||++|++|++.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0015 Score=68.60 Aligned_cols=119 Identities=14% Similarity=0.045 Sum_probs=68.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChhhHHHH
Q 002701 188 EVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVG--ILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNIL 265 (890)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 265 (890)
+......+++.+....+.+.+..++-+..... ..--..|..++++.|.+.|..++++.++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 44444555555555555666666666655441 1122334456666666666666666666666666666666666666
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 002701 266 IHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCK 306 (890)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 306 (890)
++.+.+.|++..|.++...|...+...+..|+..-+.+|++
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666666655555555555555554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.26 Score=53.37 Aligned_cols=202 Identities=14% Similarity=0.120 Sum_probs=96.6
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCc--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 002701 361 VPNLFVYNALINSLCKERKFNEAEFLFNEMKQK-GLSP--------NVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIK 431 (890)
Q Consensus 361 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 431 (890)
.|.+..|..+...-.+.-.++-|...|-+...- |++. +...-..=+.+| -|++++|.+++-++.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 366666666665555555555555555433321 1100 000001111222 256666666666555442
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHH
Q 002701 432 ATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPT----VITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTF 507 (890)
Q Consensus 432 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 507 (890)
..|..+.+.|++-...++++. .|-..| ..+|+.+...++....+++|.+.|..-.. -
T Consensus 765 -------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~ 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence 234555566666555544432 111111 24566666666666666666666654221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcC
Q 002701 508 TALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSA 587 (890)
Q Consensus 508 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 587 (890)
...+.++.+...+++-..+.+.+ +.+....-.+.+.+.+.|.-++|.+.+-+. +.+ ...+..|...
T Consensus 826 e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHH
Confidence 12344455544444444433332 234455556666777777777766655332 111 2234455555
Q ss_pred CChHHHHHHHHH
Q 002701 588 GRVSEAKEFVDG 599 (890)
Q Consensus 588 g~~~~a~~~~~~ 599 (890)
+++.+|.++-+.
T Consensus 892 nQW~~avelaq~ 903 (1189)
T KOG2041|consen 892 NQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHh
Confidence 666666655443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.014 Score=59.57 Aligned_cols=174 Identities=10% Similarity=0.042 Sum_probs=83.5
Q ss_pred HhHHHHHHHHHhhCCCchhHHHHHHHHHHcC---CCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHH
Q 002701 102 TASFCILIHGLVQNNLFWPASSLLQTLLLRG---LSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFR 178 (890)
Q Consensus 102 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 178 (890)
.+.|...++.+-..|.+++|...+.++.... .+... ....|...+.+|.+. ++++|+..|+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~---------------Aa~~~~~Aa~~~k~~-~~~~Ai~~~~ 98 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFE---------------AAKAYEEAANCYKKG-DPDEAIECYE 98 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHH---------------HHHHHHHHHHHHHHT-THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHH---------------HHHHHHHHHHHHHhh-CHHHHHHHHH
Confidence 4455556667777777777777777654321 11111 112233333443333 6666666655
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhhHHHHHHHHHhC----
Q 002701 179 LMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCEL-KDFVKAKEMIHFMDSN---- 253 (890)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~---- 253 (890)
++. ..+.+.|+++.|-..+.++- ..|-.. |++++|.+.|++..+.
T Consensus 99 ~A~---------------~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e 148 (282)
T PF14938_consen 99 KAI---------------EIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQE 148 (282)
T ss_dssp HHH---------------HHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHH---------------HHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 543 23555566555555554442 334455 6777777766666442
Q ss_pred CCCCC--hhhHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-----HH-hHHHHHHHHHccCChHHHHHHHHHHHH
Q 002701 254 GSDLN--VVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKAD-----VV-TYCTLVLGLCKVQEFEFGVWLMNEMIE 322 (890)
Q Consensus 254 ~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~ 322 (890)
| .+. ...+..+...+.+.|++++|++.|++........+ .. .+...+-++...||+..|.+.++....
T Consensus 149 ~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 149 G-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred C-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 111 12344455566677777777777777665432211 11 112222233344555555555555543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00049 Score=52.65 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 002701 748 NQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMG-KFEEATKLLGGMMD 811 (890)
Q Consensus 748 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 811 (890)
+..+|..+...+...|++++|+..|+++++..|.+..+|..++.++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45677788888888899999999999888877888888999999999988 68999999888876
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0041 Score=62.96 Aligned_cols=131 Identities=10% Similarity=0.068 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002701 750 ITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCT-MGKFEEATKLLGGMMDNGILPDCITYSTIIYQY 828 (890)
Q Consensus 750 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 828 (890)
.+|..++....+.+..+.|..+|.++.+...-+..+|...+..-.. .++.+.|.++|+..++. ...+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4688888888888899999999999998555566777777777555 56666699999999975 555678889999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 829 CKRGYLHEALKLWDSMLNKGLKPDP---LAYNFLIYGCCIRGEITKAFELRDDMMRR 882 (890)
Q Consensus 829 ~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 882 (890)
...|+.+.|..+|++.+.. +.++. ..|...+.-=.+.|+.+...++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999984 33333 58999999889999999999999998863
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00048 Score=52.52 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=28.1
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 761 REGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 761 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
..|++++|+..|+++++..|.+..++..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555555554
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0018 Score=52.58 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhccCCC-CcCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCcCHHHHH
Q 002701 333 SSLVEGFRRKGKIDDAFNLVNKLGPLGV-VPNLFVYNALINSLCKER--------KFNEAEFLFNEMKQKGLSPNVVTYS 403 (890)
Q Consensus 333 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~ 403 (890)
...|..+...|++.....+|+.+.+.|+ .|++..|+.++.+.++.. ++-+++.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3344445555666666666666666666 667777777666665432 3345666777777777777777777
Q ss_pred HHHHHHHh
Q 002701 404 ILIDSLCR 411 (890)
Q Consensus 404 ~li~~~~~ 411 (890)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00018 Score=44.57 Aligned_cols=29 Identities=45% Similarity=0.862 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 002701 366 VYNALINSLCKERKFNEAEFLFNEMKQKG 394 (890)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 394 (890)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666654
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0085 Score=50.98 Aligned_cols=92 Identities=20% Similarity=0.181 Sum_probs=67.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHH
Q 002701 720 LINGLCKAGYMDKAELLCKEMLASGSLPN--QITYGCFLDYLTREGKMEKAVQLHNAMLDGLLA---NTVTYNILIHGFC 794 (890)
Q Consensus 720 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 794 (890)
+..++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|+.++++.....|. +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34566677888888888888888765544 345666777888888888888888888875555 4444555666778
Q ss_pred hcCCHHHHHHHHHHHHH
Q 002701 795 TMGKFEEATKLLGGMMD 811 (890)
Q Consensus 795 ~~g~~~~A~~~~~~~~~ 811 (890)
..|+.++|++.+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88898888888876653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00077 Score=50.77 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=29.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 789 LIHGFCTMGKFEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 789 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
++..+.+.|++++|++.|+++++.. | +...+..++.++...|++++|..+++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555532 3 334555555555555555555555555555
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0037 Score=61.93 Aligned_cols=89 Identities=11% Similarity=0.139 Sum_probs=53.0
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcC
Q 002701 760 TREGKMEKAVQLHNAMLDGLLAN---TVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD----CITYSTIIYQYCKRG 832 (890)
Q Consensus 760 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 832 (890)
.+.|++++|+..|+.+++..|.+ +.++..++..|...|++++|...|+++.+. .|+ ...+..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcC
Confidence 44566666666666666655444 345556666666666666666666666642 122 244455566666666
Q ss_pred CHHHHHHHHHHHHhCCCCCC
Q 002701 833 YLHEALKLWDSMLNKGLKPD 852 (890)
Q Consensus 833 ~~~~A~~~~~~~~~~g~~p~ 852 (890)
+.++|...++++++ ..|+
T Consensus 232 ~~~~A~~~~~~vi~--~yP~ 249 (263)
T PRK10803 232 DTAKAKAVYQQVIK--KYPG 249 (263)
T ss_pred CHHHHHHHHHHHHH--HCcC
Confidence 67777777766666 4453
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0042 Score=50.49 Aligned_cols=75 Identities=21% Similarity=0.469 Sum_probs=39.4
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 002701 476 ISGYCNEVKLNKAFRLYHEMTGKGI-APNSYTFTALISGLCRAN--------KLTEAIKWFDEMLERNVMPNEVTYNVLI 546 (890)
Q Consensus 476 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~li 546 (890)
|..+...+++.....+|+.+.+.|+ .|++.+|+.++.+.++.. ++-+.+.+++.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555555555555 555555555555544332 2233445555555555555555555555
Q ss_pred HHHH
Q 002701 547 EGYC 550 (890)
Q Consensus 547 ~~~~ 550 (890)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.094 Score=49.73 Aligned_cols=137 Identities=14% Similarity=0.017 Sum_probs=93.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-----HHHHH
Q 002701 684 SMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYG-----CFLDY 758 (890)
Q Consensus 684 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-----~l~~~ 758 (890)
.++....-.+.+.-....+.++++...+.++.....+.+.-.+.|+.+.|...|++..+.....|..+.+ .....
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 3444444556666666777777776555566666677777777777777777777665443333333333 33344
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002701 759 LTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYS 822 (890)
Q Consensus 759 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 822 (890)
+.-++++..|...+.+++...+.|+..-|.-+-++.-.|+..+|++.++.|++ ..|...+-+
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 56678888999999888887788888888777666667899999999999987 455554444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0061 Score=60.47 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHH
Q 002701 785 TYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC----ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP----DPLAY 856 (890)
Q Consensus 785 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~ 856 (890)
.|..-...+.+.|++++|+..|+.+++. .|+. .++..++.+|...|++++|...|+++++ ..| .+..+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~--~yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK--NYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhHHH
Confidence 3444444456789999999999999984 3443 5778899999999999999999999998 444 35666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002701 857 NFLIYGCCIRGEITKAFELRDDMMRRG 883 (890)
Q Consensus 857 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 883 (890)
..++..+...|++++|.+.++++++.-
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 777888999999999999999998653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0011 Score=50.43 Aligned_cols=53 Identities=9% Similarity=0.157 Sum_probs=34.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 002701 200 VKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSN 253 (890)
Q Consensus 200 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (890)
.+.|++++|...|+++.... +.+..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566666777776666655 456666666666666667777777666666665
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.33 Score=49.01 Aligned_cols=221 Identities=13% Similarity=0.035 Sum_probs=102.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHH--HHHHHHH---HhcCC
Q 002701 656 KQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGE-GCVPNVVTY--TALINGL---CKAGY 729 (890)
Q Consensus 656 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~--~~l~~~~---~~~g~ 729 (890)
+.|..+.|..+-....... +.-.......+...+..|+++.|+++.+.-... -+.++..-- ..|+.+- .-.-+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3445555554444443331 112233444445555555555555555444332 112222111 1111110 01123
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 730 MDKAELLCKEMLASGSLPNQITY-GCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGG 808 (890)
Q Consensus 730 ~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 808 (890)
...|...-.+..+ +.||..-- ..-..++.+.|+..++-.+++.+-+.. |.+.++.. ....+.|+. ++.-+++
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e-PHP~ia~l--Y~~ar~gdt--a~dRlkR 317 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE-PHPDIALL--YVRARSGDT--ALDRLKR 317 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC-CChHHHHH--HHHhcCCCc--HHHHHHH
Confidence 4444444444432 34443222 223355666777777777776666622 22222221 122334432 2322332
Q ss_pred HHHC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCC
Q 002701 809 MMDN-GILPDC-ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGC-CIRGEITKAFELRDDMMRRGIF 885 (890)
Q Consensus 809 ~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~g~~ 885 (890)
+... .++|+. .....+..+-...|++..|..-.+.+.. ..|....|..|.+.- ...|+-.++..++.+.++.--.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 2211 134443 5555566666667777777766666666 566666666666553 3447777777777666654333
Q ss_pred C
Q 002701 886 P 886 (890)
Q Consensus 886 p 886 (890)
|
T Consensus 396 P 396 (531)
T COG3898 396 P 396 (531)
T ss_pred C
Confidence 3
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.34 Score=48.88 Aligned_cols=298 Identities=16% Similarity=0.103 Sum_probs=170.2
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH--HHcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 002701 505 YTFTALISGLC--RANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGY--CREGCMVKAFELLDEMAGKGLVADTYTYRSL 580 (890)
Q Consensus 505 ~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 580 (890)
..|.+|-.++. ..|+-..|.++-.+..+. +..|......++.+- .-.|+++.|.+-|+.|.. |+.+-..=
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllG 156 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLG 156 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHh
Confidence 34666666554 346777777666554322 233444444454433 346888888888888876 33332222
Q ss_pred HHH----HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHH--HHHHHHH
Q 002701 581 ITG----LCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERG-VNMDLVC--YSVLIDG 653 (890)
Q Consensus 581 ~~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~li~~ 653 (890)
+.+ -.+.|..+.|...-+.....-+. -...+.+.+...|..|+|+.|+++.+.-.... +.++..- -..|+.+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 222 24667778787777777665322 45566777778888888888888877655432 1222111 1111111
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhH
Q 002701 654 SLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVT-YTALINGLCKAGYMDK 732 (890)
Q Consensus 654 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~ 732 (890)
+.|.. -..+...|...-.+..+. .|+..- --.-..++.+.|+..+
T Consensus 236 --------------kA~s~------------------ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rK 281 (531)
T COG3898 236 --------------KAMSL------------------LDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRK 281 (531)
T ss_pred --------------HHHHH------------------hcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhh
Confidence 11110 112333444443333332 344322 1223456778888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 733 AELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLD---GLLANTVTYNILIHGFCTMGKFEEATKLLGGM 809 (890)
Q Consensus 733 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 809 (890)
+-.+++.+-+....|+... +....+.|+. ++.-++...+ ..|.|......+..+-...|++..|..--+.+
T Consensus 282 g~~ilE~aWK~ePHP~ia~----lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 282 GSKILETAWKAEPHPDIAL----LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred hhhHHHHHHhcCCChHHHH----HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 8888888877654454321 1223445543 3333333222 55667777777788877888888887777766
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC
Q 002701 810 MDNGILPDCITYSTIIYQYCKR-GYLHEALKLWDSMLNKGLKP 851 (890)
Q Consensus 810 ~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p 851 (890)
.. ..|....|..|.+.-... |+-.++..++-+.++..-.|
T Consensus 356 ~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 356 AR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 65 567777777777765544 88888888888887754444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.17 Score=48.52 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 002701 677 PDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEG--CVPNVVTYTALINGLCKAGYMDKAELLCKEMLAS 743 (890)
Q Consensus 677 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 743 (890)
|-...|+..+.-+ +.|++++|.+.|+.+...- .+-...+...++.++.+.+++++|+..+++.++.
T Consensus 33 p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3334444444433 6788888888888887652 1223445555666777888888888888888765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.021 Score=51.62 Aligned_cols=66 Identities=27% Similarity=0.405 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCC
Q 002701 820 TYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDDMM-----RRGIFPS 887 (890)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~ 887 (890)
+...++..+...|++++|..++++++. ..| |...|..++.+|...|+..+|.+.|+++. +.|+.|+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 344455555666666666666666666 555 55566666666666666666666666554 2455554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.081 Score=56.50 Aligned_cols=77 Identities=18% Similarity=0.112 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 002701 505 YTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGL 584 (890)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 584 (890)
.+...+..-+.+...+.-|.++|.+|-.. ..++......+++.+|+.+-++..+. .|| +|....+-+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaqwL 814 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQWL 814 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHHHh
Confidence 33334444444556666777777665432 24556666777777777776665442 222 233334444
Q ss_pred HcCCChHHHH
Q 002701 585 CSAGRVSEAK 594 (890)
Q Consensus 585 ~~~g~~~~a~ 594 (890)
....++++|.
T Consensus 815 AE~DrFeEAq 824 (1081)
T KOG1538|consen 815 AENDRFEEAQ 824 (1081)
T ss_pred hhhhhHHHHH
Confidence 4444444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.058 Score=57.56 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=40.5
Q ss_pred HHHHHhcCChhHHHHHHHH------HHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002701 721 INGLCKAGYMDKAELLCKE------MLASGSL---PNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIH 791 (890)
Q Consensus 721 ~~~~~~~g~~~~A~~~~~~------~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 791 (890)
...+...|+.++|+.+.-+ +.+-+.+ .+..+...+...+-+...+.-|-++|.+|-+ ...++.
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVq 781 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQ 781 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhh
Confidence 4555667777777665421 1111111 1223333333333444445555555555433 223445
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 002701 792 GFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 792 ~~~~~g~~~~A~~~~~~~~~ 811 (890)
.....++|++|..+.++..+
T Consensus 782 lHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred heeecccchHhHhhhhhCcc
Confidence 55556666666666666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.097 Score=50.22 Aligned_cols=48 Identities=13% Similarity=0.254 Sum_probs=28.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHH
Q 002701 755 FLDYLTREGKMEKAVQLHNAMLDGLLANTV---TYNILIHGFCTMGKFEEA 802 (890)
Q Consensus 755 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A 802 (890)
++..|.+.|.+..|..-++.+++..|.+.. ++..++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 445566777777777777777775555543 344455666666666533
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.49 Score=46.79 Aligned_cols=222 Identities=19% Similarity=0.115 Sum_probs=129.1
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002701 622 EGRLKDALGACREMVERGVNM-DLVCYSVLIDGSLKQSDTRRYFGLLKEMHDK-GLRPDNVIYTSMIDAKGKAGNLKEAF 699 (890)
Q Consensus 622 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 699 (890)
.+....+...+.......... ...........+...+....+...+...... ........+......+...++++.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355555666666555543221 2455566666666777777777776666542 23444455555666666667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 002701 700 RLWDIMIGEGCVPNVVTYTALIN-GLCKAGYMDKAELLCKEMLASGS--LPNQITYGCFLDYLTREGKMEKAVQLHNAML 776 (890)
Q Consensus 700 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 776 (890)
..+.........+ ......... .+...|++++|...+++...... ......+......+...++.+.|...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777776653222 111222222 56677777777777777754211 0122333333344556667777777777777
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 777 DGLLA-NTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD-CITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 777 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
+..+. ....+..+...+...+++++|...+...... .|+ ...+..+...+...|..+++...+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75555 4666677777777777777777777777663 333 34444444444455667777777777666
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0097 Score=61.88 Aligned_cols=63 Identities=11% Similarity=-0.040 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 749 QITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTV---TYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 749 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
...++.+..+|.+.|++++|+..|+++++..|.+.. +|+.++.+|...|+.++|++.++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444455555555555555554443333332 244455555555555555555555444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.05 Score=59.50 Aligned_cols=162 Identities=15% Similarity=0.066 Sum_probs=111.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH----hcCCHHHHHHHHHHHhcCCCCCHHHHH
Q 002701 718 TALINGLCKAGYMDKAELLCKEMLASGSLPNQI------TYGCFLDYLT----REGKMEKAVQLHNAMLDGLLANTVTYN 787 (890)
Q Consensus 718 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~ 787 (890)
..++....-.|+-+.+++.+.+..+.+-.-... .|...+..++ ...+.+.|.+++..+.+.+|.+.....
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 344555556677777877777765532111222 2222222222 356788899999999998888887777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HH
Q 002701 788 ILIHGFCTMGKFEEATKLLGGMMDNG--IL-PDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLI--YG 862 (890)
Q Consensus 788 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~--~~ 862 (890)
.-++.+...|+.++|++.|+++.... .+ .....+--+++++.-.+++++|...+.++.+ ......+++.++ .+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~--~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK--ESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh--ccccHHHHHHHHHHHH
Confidence 78888889999999999999876421 11 1235566788899999999999999999998 555444444333 34
Q ss_pred HHhcCCH-------HHHHHHHHHHHH
Q 002701 863 CCIRGEI-------TKAFELRDDMMR 881 (890)
Q Consensus 863 ~~~~g~~-------~~A~~~~~~m~~ 881 (890)
+...|+. ++|.+++.++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6778888 888888888763
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.065 Score=56.07 Aligned_cols=79 Identities=13% Similarity=-0.084 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 732 KAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 732 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
+|.++.++..+.+ +.|......+..+....++++.|...|+++....|....+|...+....-.|+.++|.+.+++..+
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4444444444432 234444444444444455555555555555555555555555555555555555555555555544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.47 Score=45.20 Aligned_cols=155 Identities=13% Similarity=0.115 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 695 LKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNA 774 (890)
Q Consensus 695 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 774 (890)
.+...+.|++=.. ...+.++..+.-.|.+.-...++++.++...+.+......+.+.-.+.||.+.|...|+.
T Consensus 165 ~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3555666655432 244567777778899999999999999876566788888888888999999999999997
Q ss_pred Hhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 002701 775 MLD------GLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKG 848 (890)
Q Consensus 775 ~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 848 (890)
+.+ +...+..+.......+.-.+++.+|...+.++.... +.+...-|+-.-++.-.|+..+|++..+.|.+
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~-- 314 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ-- 314 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 765 223333344445556677789999999999988742 22455556666667778999999999999999
Q ss_pred CCCCHHHHHHH
Q 002701 849 LKPDPLAYNFL 859 (890)
Q Consensus 849 ~~p~~~~~~~l 859 (890)
..|.+.+..++
T Consensus 315 ~~P~~~l~es~ 325 (366)
T KOG2796|consen 315 QDPRHYLHESV 325 (366)
T ss_pred cCCccchhhhH
Confidence 77765554433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0066 Score=46.95 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=24.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 792 GFCTMGKFEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 792 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
.|.+.+++++|++++++++.. .| +...|...+.++.+.|++++|...+++.++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444455555555444442 22 223444444444455555555555555444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.074 Score=47.33 Aligned_cols=87 Identities=10% Similarity=-0.091 Sum_probs=56.0
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002701 759 LTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEAL 838 (890)
Q Consensus 759 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 838 (890)
+...|++++|..+|.-+.--.+-|...|..|+.++...+++++|+..|..+...+. -|+...-..+.++...|+.++|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 34667777777777766665555666666677777667777777777766654321 23344555666777777777777
Q ss_pred HHHHHHHh
Q 002701 839 KLWDSMLN 846 (890)
Q Consensus 839 ~~~~~~~~ 846 (890)
..|+..++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77776666
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.16 Score=52.42 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002701 684 SMIDAKGKAGNLKEAFRLWDIMIGEG---CVPNVVTYTALINGLCK---AGYMDKAELLCKEMLASGSLPNQITYGCFLD 757 (890)
Q Consensus 684 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 757 (890)
.++-.|-...+++.-.++.+.+...- +......-...+-++.+ .|+.++|++++..++.....++..++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445666666777777766666531 11111112223344455 6667777777766554445566666666665
Q ss_pred HHH----h-----cCCHHHHHHHHHHHhc
Q 002701 758 YLT----R-----EGKMEKAVQLHNAMLD 777 (890)
Q Consensus 758 ~~~----~-----~g~~~~A~~~~~~~~~ 777 (890)
.|- . ....++|+..|.+.-+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 541 1 1235556666665555
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.025 Score=57.52 Aligned_cols=93 Identities=15% Similarity=0.046 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 002701 785 TYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD-PLAYNFLIYGC 863 (890)
Q Consensus 785 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 863 (890)
+++.|+-++.+.+++.+|++.-++.++.. ++|...+-.-+.+|...|+++.|+..|+++++ +.|+ ..+-..|+..-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 34555555666666666666666665531 23445555555666666666666666666666 5553 23333333333
Q ss_pred HhcCCHH-HHHHHHHHHH
Q 002701 864 CIRGEIT-KAFELRDDMM 880 (890)
Q Consensus 864 ~~~g~~~-~A~~~~~~m~ 880 (890)
.+..++. ...++|..|.
T Consensus 336 ~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 3332222 2355555555
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.036 Score=49.23 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 002701 157 FDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCE 236 (890)
Q Consensus 157 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (890)
....+.-+...|++++|..+|.-+...++. +...|..|..++-..+++++|...|......+ ..|...+.....++..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHH
Confidence 344667788999999999999999877766 67778888888888899999999999988776 5666777788888999
Q ss_pred cCChhhHHHHHHHHHhC
Q 002701 237 LKDFVKAKEMIHFMDSN 253 (890)
Q Consensus 237 ~g~~~~A~~~~~~~~~~ 253 (890)
.|+.+.|+..|+..+..
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999999888863
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.76 Score=47.19 Aligned_cols=107 Identities=16% Similarity=0.263 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 002701 331 AVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLC 410 (890)
Q Consensus 331 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 410 (890)
+....+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-.+.... + -++..|...+..+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 34444555566666666666655543 36666667777777777777665554321 1 13466666677777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 002701 411 RRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFF 457 (890)
Q Consensus 411 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 457 (890)
+.|+..+|..++.++ .+..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 777777666666551 1244556666677776665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.64 Score=45.92 Aligned_cols=200 Identities=19% Similarity=0.066 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 002701 610 MCYSALLHGYCKEGRLKDALGACREMVER-GVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMID- 687 (890)
Q Consensus 610 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~- 687 (890)
..+......+...+.+..+...+...... ........+......+...++...+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 34444444555555555555555544431 1222333344444444444555555555555544322221 11111111
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 002701 688 AKGKAGNLKEAFRLWDIMIGEGC--VPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLP-NQITYGCFLDYLTREGK 764 (890)
Q Consensus 688 ~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 764 (890)
.+...|+++.|...+........ ......+......+...++.++|...+.+..... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 34455555555555555533210 0122222222333344455555555555555431 11 23444444455555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 765 MEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 765 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
++.|...+.......+.....+..+...+...+..+++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555553333333334444444444445555555555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.72 E-value=1.5 Score=49.28 Aligned_cols=184 Identities=16% Similarity=0.157 Sum_probs=117.0
Q ss_pred cHhHHHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 002701 101 STASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLM 180 (890)
Q Consensus 101 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 180 (890)
.....-.-+.+|++...|+.|..+-.. ...+.+....+...| +..+.+.|++++|.+.|-+.
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~----~~~d~d~~~~i~~kY--------------gd~Ly~Kgdf~~A~~qYI~t 394 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKS----QHLDEDTLAEIHRKY--------------GDYLYGKGDFDEATDQYIET 394 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHh----cCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHH
Confidence 345556677888888888888765433 222333334444333 45678899999999888665
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChh
Q 002701 181 REKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVV 260 (890)
Q Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 260 (890)
... +.| ..++.-+....+..+-..+++.+.+.| -.+..--+.|+++|.+.++.++-.++.+... .|. -..
T Consensus 395 I~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~--~~f 464 (933)
T KOG2114|consen 395 IGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGE--WFF 464 (933)
T ss_pred ccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccc--eee
Confidence 432 122 234455566677777788888888888 4556666789999999999988777776554 221 122
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 002701 261 VYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEM 320 (890)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 320 (890)
-.-..+..+.+.+-+++|.-+-.+... +......++ -..+++++|+++++.+
T Consensus 465 d~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 465 DVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred eHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 345566677777778887776655432 223333333 2457788888777655
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0047 Score=48.56 Aligned_cols=63 Identities=27% Similarity=0.411 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 784 VTYNILIHGFCTMGKFEEATKLLGGMMDN----GIL-PD-CITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 784 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
.+|+.++..|...|++++|++.++++++. |-. |+ ..++..++.++...|++++|++++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555555555566655555555431 100 11 23445555555555555555555555443
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.01 Score=45.91 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=46.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 002701 757 DYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC 818 (890)
Q Consensus 757 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 818 (890)
..|.+.+++++|++.++.+++..|.++..+...+.++.+.|++++|.+.+++..+ ..|+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCc
Confidence 4567778888888888888887777788888888888888888888888888876 34544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0078 Score=47.29 Aligned_cols=63 Identities=22% Similarity=0.261 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 819 ITYSTIIYQYCKRGYLHEALKLWDSMLNK--GLKP---D-PLAYNFLIYGCCIRGEITKAFELRDDMMR 881 (890)
Q Consensus 819 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 881 (890)
.+|+.++..|...|++++|+.++++.++. ...+ + ..++..++.+|...|++++|++++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56777788888888888888888877652 1222 1 35567777778888888888888877664
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.037 Score=51.38 Aligned_cols=103 Identities=21% Similarity=0.347 Sum_probs=67.7
Q ss_pred cCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH
Q 002701 397 PNVVTYSILIDSLCR-----RGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVIT 471 (890)
Q Consensus 397 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 471 (890)
.+..+|..+++.|.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------- 112 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------- 112 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh----------
Confidence 367777777777764 46777777788888888888888888888887654 3321 111111111
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 002701 472 YTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRAN 518 (890)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 518 (890)
.- --.+.+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 113 -----~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 -----MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred -----cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 01 12334667788888888888888888888888775554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.053 Score=50.36 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002701 732 KAELLCKEMLASGSLPNQITYGCFLDYLTR 761 (890)
Q Consensus 732 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 761 (890)
-|++++++|...|+.||..++..+++.+.+
T Consensus 121 c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 121 CAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 345555555555555555555555555543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.62 E-value=2 Score=49.38 Aligned_cols=192 Identities=10% Similarity=0.060 Sum_probs=116.8
Q ss_pred hHHHHHHHHHhccCCCCCc--cHhHHHHHHHHHh-hCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHH
Q 002701 82 SRLALRFFNFLGLHKTFNH--STASFCILIHGLV-QNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFD 158 (890)
Q Consensus 82 ~~~al~ff~~~~~~~~~~~--~~~~~~~l~~~l~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (890)
-..|++.+.-+.++...++ ...++..++.+|. ...++++|+..|.+.+..... .+..+.-+. +-.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~-----------~~~ 104 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFR-----------CQF 104 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHH-----------HHH
Confidence 3467777777765444443 3566788999988 888999999999988765433 222222222 334
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHhhHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHH
Q 002701 159 LLIQSYVQNKRVADGVFVFRLMREKH----LMPEVRTLSGV-LNGLVKIRQFGLVLKLFEDVVNVG---ILPDIYIHSAV 230 (890)
Q Consensus 159 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l 230 (890)
+|++.|.+.+... |....++..+.- ..+-...|..+ +..+...+++..|.+.++.+.... ..|...++..+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 5678888877766 888888874321 11222223333 222333479999999999886543 13444455445
Q ss_pred HHHHH--ccCChhhHHHHHHHHHhCCC---------CCChhhHHHHHHHHH--ccCChhHHHHHHHHHH
Q 002701 231 MRSLC--ELKDFVKAKEMIHFMDSNGS---------DLNVVVYNILIHGLC--KSQRVFEAVEVKNGFV 286 (890)
Q Consensus 231 ~~~~~--~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~ 286 (890)
+.+.. +.+..+++.+.++++..... .|-..+|..+++.+| ..|+++.+.+.++++.
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44443 45667778888877743211 234557777777554 5677666666555543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.36 Score=52.97 Aligned_cols=169 Identities=15% Similarity=0.052 Sum_probs=88.8
Q ss_pred CCChHHHHHHHHh--cCCChHHHHHHHHHhccCCCCCccHhHHHHHH-----HHHhh----CCCchhHHHHHHHHHHcCC
Q 002701 65 ALKPHHVEKVLIQ--TLDDSRLALRFFNFLGLHKTFNHSTASFCILI-----HGLVQ----NNLFWPASSLLQTLLLRGL 133 (890)
Q Consensus 65 ~l~~~~v~~~l~~--~~~~~~~al~ff~~~~~~~~~~~~~~~~~~l~-----~~l~~----~~~~~~a~~~l~~~~~~~~ 133 (890)
.+=|+.|.++|.- ..+|-+.+++....+....+.+....+...+. ..++. ....+.|..+|+.+....|
T Consensus 185 SlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP 264 (468)
T PF10300_consen 185 SLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP 264 (468)
T ss_pred HhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC
Confidence 3335556666543 45667777777776655555433333222222 11111 2233444444444444333
Q ss_pred CchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-C--CCHhhHHHHHHHHHhcCChhHHHH
Q 002701 134 SPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLMREKHL-M--PEVRTLSGVLNGLVKIRQFGLVLK 210 (890)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~~~~~~A~~ 210 (890)
+ +......-++.+...|++++|++.|+.+..... . .....+.-+..++.-..++++|..
T Consensus 265 ~------------------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 265 N------------------SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred C------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 1 122223445677778888888888886642111 1 112234445556667778888888
Q ss_pred HHHHHHHCCCCCCHHHHH-HHHHHHHccCCh-------hhHHHHHHHHHh
Q 002701 211 LFEDVVNVGILPDIYIHS-AVMRSLCELKDF-------VKAKEMIHFMDS 252 (890)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~ 252 (890)
.|..+.+.+ ..+..+|. ..+.++...|+. ++|.++|.++..
T Consensus 327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888887765 33333333 333344556666 667777766643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.1 Score=45.95 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002701 716 TYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCT 795 (890)
Q Consensus 716 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 795 (890)
+.+..+.-+...|+...|.++-.+. + .|+..-|...+.+++..++|++-..+... ..++.-|...+..+.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHH
Confidence 3444456667788888888887777 2 57888888888999999998876654332 2344678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 796 MGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSM 844 (890)
Q Consensus 796 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 844 (890)
.|+..+|..++.++. +..-+..|.+.|++.+|.+..-+.
T Consensus 250 ~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 899988888887721 244566778888888888776554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.081 Score=52.52 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--CCCCC----HHH
Q 002701 716 TYTALINGLCKAGYMDKAELLCKEMLAS-GSLP---NQITYGCFLDYLTREGKMEKAVQLHNAMLD--GLLAN----TVT 785 (890)
Q Consensus 716 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~----~~~ 785 (890)
.|..+.+++.+.-++.+++.+-+.-... |..| -.....++..++...+.++++++.|+.+.+ ....| ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4445555555555555555555444432 1112 112334455666666677777777777766 22222 245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 002701 786 YNILIHGFCTMGKFEEATKLLGGMMDN----GILPDC-----ITYSTIIYQYCKRGYLHEALKLWDSMLNK----GLKP- 851 (890)
Q Consensus 786 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p- 851 (890)
+..|...|....++++|+-+..++.+. ++..-. .....+.-++...|..-.|.+.-++..+. |-.|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 667777777777777777666655431 222111 22334555666677777777776665542 2222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 852 DPLAYNFLIYGCCIRGEITKAFELRDDMM 880 (890)
Q Consensus 852 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 880 (890)
-......+++.|...|+.+.|..-|+++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12333556667777777777776666554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.038 Score=46.10 Aligned_cols=91 Identities=18% Similarity=0.104 Sum_probs=69.7
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCH
Q 002701 758 YLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC---ITYSTIIYQYCKRGYL 834 (890)
Q Consensus 758 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~ 834 (890)
++...|+++.|++.|.+.+...|.++.+||.-+.++.-+|+.++|++-++++++..-.... ..|..-+..|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4567888899999999888888888889999999998889999999999888874211122 3344445567778888
Q ss_pred HHHHHHHHHHHhCC
Q 002701 835 HEALKLWDSMLNKG 848 (890)
Q Consensus 835 ~~A~~~~~~~~~~g 848 (890)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888877754
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.06 Score=54.86 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH
Q 002701 750 ITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITY-STIIYQY 828 (890)
Q Consensus 750 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~ 828 (890)
.+++.+.-++.+.+++.+|++..++++...|+|+..+.--+.++...|+++.|...|+++++ +.|+.... ..|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 35667788889999999999999999998999999999999999999999999999999998 67877444 4454444
Q ss_pred HhcCCH-HHHHHHHHHHHh
Q 002701 829 CKRGYL-HEALKLWDSMLN 846 (890)
Q Consensus 829 ~~~g~~-~~A~~~~~~~~~ 846 (890)
-+...+ ++..++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 444443 445888888876
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.73 Score=44.39 Aligned_cols=84 Identities=14% Similarity=-0.012 Sum_probs=53.0
Q ss_pred cHhHHHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 002701 101 STASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLM 180 (890)
Q Consensus 101 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 180 (890)
.+..+..-+....+.|++.+|...|+.+..+.|-.+- ...+-..++.++.+.+++++|+..+++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~---------------~~qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY---------------SEQAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc---------------cHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3455666677777788888888888887776653322 1345555777888888888888888777
Q ss_pred HhCCC-CCCHhhHHHHHHHHH
Q 002701 181 REKHL-MPEVRTLSGVLNGLV 200 (890)
Q Consensus 181 ~~~~~-~~~~~~~~~l~~~~~ 200 (890)
...-+ .||+ .|...|.++.
T Consensus 98 i~lyP~~~n~-dY~~YlkgLs 117 (254)
T COG4105 98 IRLYPTHPNA-DYAYYLKGLS 117 (254)
T ss_pred HHhCCCCCCh-hHHHHHHHHH
Confidence 55433 3443 3334444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.63 Score=48.22 Aligned_cols=73 Identities=12% Similarity=0.033 Sum_probs=39.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002701 652 DGSLKQSDTRRYFGLLKEMHDKG---LRPDNVIYTSMIDAKGK---AGNLKEAFRLWDIMIGEGCVPNVVTYTALINGL 724 (890)
Q Consensus 652 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 724 (890)
-+|....+++..+++.+.+.... +......--...-++.+ .|+.++|..++..+......++..+|..+...|
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34666667777777776666531 11111111222333444 677777777776655444456666666665554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.40 E-value=2.3 Score=47.73 Aligned_cols=118 Identities=15% Similarity=0.192 Sum_probs=56.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHH
Q 002701 297 YCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSE--AAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSL 374 (890)
Q Consensus 297 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 374 (890)
.-.-+..+++..-++-|+.+-+ ..+..++. ......+.-+.+.|++++|...|-+.+..- .|. .+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHh
Confidence 3344455555555555554422 22222211 223333444456666666666655544321 111 233344
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 375 CKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGK 424 (890)
Q Consensus 375 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 424 (890)
....++.+--..++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 4445555555556666666554 333344566666666666555544443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.11 Score=46.96 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 788 ILIHGFCTMGKFEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLWDSM 844 (890)
Q Consensus 788 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 844 (890)
.++..+...|++++|+.+.+++... .| +...|..++.+|...|+..+|++.|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444444555555555555555542 22 3345555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.4 Score=44.74 Aligned_cols=168 Identities=11% Similarity=-0.010 Sum_probs=95.8
Q ss_pred hhCCCchhHHHHHHHHHHcC-CCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcC-ChhHHHHHHHHHHhC-------
Q 002701 113 VQNNLFWPASSLLQTLLLRG-LSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNK-RVADGVFVFRLMREK------- 183 (890)
Q Consensus 113 ~~~~~~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~------- 183 (890)
.++|+++.|..++.++.... .-..+....+.+ .+...+......+ ++++|..++++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~-----------~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELAR-----------VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHH-----------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence 35778888888888876543 222222233332 4444666777777 999998888777432
Q ss_pred -CCCCCH-----hhHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCC
Q 002701 184 -HLMPEV-----RTLSGVLNGLVKIRQFG---LVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNG 254 (890)
Q Consensus 184 -~~~~~~-----~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 254 (890)
...|+. .++..++.++...+..+ .|..+.+.+.+.. +....++..-+.++.+.++.+++.+.+.+|+..-
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 122332 34666777777766543 4555555554432 3334555555666666788888888888887752
Q ss_pred CCCChhhHHHHHHHH---HccCChhHHHHHHHHHHHCCCCCCH
Q 002701 255 SDLNVVVYNILIHGL---CKSQRVFEAVEVKNGFVKRGVKADV 294 (890)
Q Consensus 255 ~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~ 294 (890)
......+...++.+ .. .....|...++.+....+.|..
T Consensus 152 -~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 152 -DHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred -ccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 11223444444433 33 2334566666666555444443
|
It is also involved in sporulation []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.27 E-value=2.5 Score=46.83 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002701 749 QITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQY 828 (890)
Q Consensus 749 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 828 (890)
..+.+--+.-+..-|+-.+|.++-.+.. -|+...|-.-+.++...++|++-.++-+... .+.-|.-.+.+|
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 3344444455667788888877766543 3677777777888888888877666655543 245567778888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 829 CKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDM 879 (890)
Q Consensus 829 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 879 (890)
.+.|+.+||.+++-+.-. . . ....+|.+.|++.+|.+..-+-
T Consensus 755 ~~~~n~~EA~KYiprv~~--l---~----ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG--L---Q----EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HhcccHHHHhhhhhccCC--h---H----HHHHHHHHhccHHHHHHHHHHh
Confidence 888888888888876533 1 1 5667788888888888765443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.021 Score=59.50 Aligned_cols=102 Identities=11% Similarity=0.030 Sum_probs=79.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 002701 778 GLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC----ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDP 853 (890)
Q Consensus 778 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 853 (890)
..|.+...++.++.+|.+.|++++|+..|++.++ +.|+. .+|..++.+|...|+.++|+..++++++ +.+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe--lsn~- 144 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR--DYNL- 144 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcch-
Confidence 4577889999999999999999999999999998 56775 3599999999999999999999999999 4221
Q ss_pred HHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCC
Q 002701 854 LAYNFLIY--GCCIRGEITKAFELRDDMMRRGIF 885 (890)
Q Consensus 854 ~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~g~~ 885 (890)
.|..+.. .+....+.++..++++.+.+-|..
T Consensus 145 -~f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 145 -KFSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred -hHHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 2222221 233444566788888888877753
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.27 Score=46.26 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=30.9
Q ss_pred HHHHHHHhccCCCCCccHhHHHHHHHHHhhCCCchhHHHHHHHHHH
Q 002701 85 ALRFFNFLGLHKTFNHSTASFCILIHGLVQNNLFWPASSLLQTLLL 130 (890)
Q Consensus 85 al~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~ 130 (890)
++..-+|. |++.-....|..-+.++-.++.|++|...|.+++.
T Consensus 17 a~t~~~wk---ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 17 ALTLTRWK---ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHhhccC---CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 33334453 33444677788888899999999999998888774
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.39 Score=47.42 Aligned_cols=151 Identities=13% Similarity=0.068 Sum_probs=69.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 002701 727 AGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANT----VTYNILIHGFCTMGKFEEA 802 (890)
Q Consensus 727 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 802 (890)
.|+..+|...++++++. .+.|...+...-++|.-.|+.+.-...+++++..-.++. ..--.+..++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45555555555555543 344555555555555555555555555555554322222 2222234444555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 803 TKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNK---GLKPDPLAYNFLIYGCCIRGEITKAFELRDDM 879 (890)
Q Consensus 803 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 879 (890)
.+..++..+.+ +-|.-.-.++...+--.|+++++.++..+-.+. +--.-...|.+.+-.+...+.++.|.++|++=
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 55555555421 112233334444455555555555554443221 00001233334444445555555555555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.036 Score=53.53 Aligned_cols=90 Identities=11% Similarity=0.023 Sum_probs=75.1
Q ss_pred CCChHHHHHHH-HHhccCCCCCccHhHHHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhH
Q 002701 79 LDDSRLALRFF-NFLGLHKTFNHSTASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGF 157 (890)
Q Consensus 79 ~~~~~~al~ff-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (890)
.+|...|..-| +|+...|+...+..+++.|+.++...|++++|...|..+....|+.... +.+.
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA---------------pdal 218 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA---------------PDAL 218 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC---------------hHHH
Confidence 45777787555 4999999999999999999999999999999999999999877654433 3344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 002701 158 DLLIQSYVQNKRVADGVFVFRLMREK 183 (890)
Q Consensus 158 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 183 (890)
.-|+.+..+.|+.++|...|+++.+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 55888999999999999999998765
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.085 Score=44.08 Aligned_cols=94 Identities=16% Similarity=0.060 Sum_probs=75.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhc
Q 002701 790 IHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNK-GLKP--DPLAYNFLIYGCCIR 866 (890)
Q Consensus 790 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p--~~~~~~~l~~~~~~~ 866 (890)
+-++...|+.+.|++.|.+.+.. .+.....|+.-..++.-.|+.++|+.-+++.++. |-.. --..|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 44677889999999999999984 2335689999999999999999999999999983 2221 123455556678899
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 002701 867 GEITKAFELRDDMMRRGI 884 (890)
Q Consensus 867 g~~~~A~~~~~~m~~~g~ 884 (890)
|+.+.|..-|+..-+.|-
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 999999999999887764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.17 E-value=1 Score=42.56 Aligned_cols=87 Identities=13% Similarity=0.050 Sum_probs=44.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCHHHHHHH
Q 002701 719 ALINGLCKAGYMDKAELLCKEMLAS----GSLPNQ-ITYGCFLDYLTREGKMEKAVQLHNAMLD----GLLANTVTYNIL 789 (890)
Q Consensus 719 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l 789 (890)
...+.+.+...+++|-..+.+-... .--++. ..+...+-.+....++..|...++.-.+ .-+.+..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 3344555666666655544433211 011111 2233333344455677777777776443 234455666666
Q ss_pred HHHHHhcCCHHHHHHHH
Q 002701 790 IHGFCTMGKFEEATKLL 806 (890)
Q Consensus 790 ~~~~~~~g~~~~A~~~~ 806 (890)
+.+| ..|+.+++.+++
T Consensus 235 L~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHh-ccCCHHHHHHHH
Confidence 6666 456666665554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.13 Score=49.83 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC---CHHHHHHHHH
Q 002701 717 YTALINGLCKAGYMDKAELLCKEMLASGS--LPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLA---NTVTYNILIH 791 (890)
Q Consensus 717 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~ 791 (890)
|+.-+..+ +.|++.+|...|...++... .-....+..|..++...|+++.|...|..+.+..|. -+.++.-|+.
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444333 44445555555555554310 011223333444444444444444444444442221 2233444444
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 002701 792 GFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 792 ~~~~~g~~~~A~~~~~~~~~ 811 (890)
+..+.|+.++|...|+++.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 44444444444444444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.89 E-value=3.4 Score=44.87 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 002701 399 VVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIY-PYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLIS 477 (890)
Q Consensus 399 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 477 (890)
...+..++.---.....+.+...+..++.. .|... -|......-.+.|..+.+.++|++.+.. ++-....|...+.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 344555554443444445555666666544 23332 3444445555667777777777776653 3334445555544
Q ss_pred HHH-ccCCHHHHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 478 GYC-NEVKLNKAFRLYHEMTGK-GIA-PNSYTFTALISGLCRANKLTEAIKWFDEMLER 533 (890)
Q Consensus 478 ~~~-~~g~~~~A~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 533 (890)
.++ ..|+.+.....|+..... |.. -....|...|.--..++++.....++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 433 355666666666666554 211 12344555555555666777777777776653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.16 Score=44.23 Aligned_cols=85 Identities=13% Similarity=0.026 Sum_probs=62.3
Q ss_pred cHhHHHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 002701 101 STASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLM 180 (890)
Q Consensus 101 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 180 (890)
+...+..-+....+.|+|.+|...|+.+..+.|...- ...+-..|+.+|++.+++++|+..+++.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y---------------a~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY---------------AEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc---------------cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4566677788888999999999999998887764322 2345556899999999999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHH
Q 002701 181 REKHLMPEVRTLSGVLNGLV 200 (890)
Q Consensus 181 ~~~~~~~~~~~~~~l~~~~~ 200 (890)
.+.++...-.-|...+.++.
T Consensus 74 irLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 74 IRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCCCCCccHHHHHHHHH
Confidence 88776533344444454544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.69 Score=48.74 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 750 ITYGCFLDYLTREGKMEKAVQLHNAMLDGLLA--NTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 750 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
.+-..+..++-+.|+.++|++.+.++++..|. +..+...|+.++...+++.++..++.+-.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33345666667778888888888887764443 344666777788888888888888777654
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.28 Score=51.48 Aligned_cols=145 Identities=13% Similarity=0.009 Sum_probs=111.2
Q ss_pred ChhHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 002701 729 YMDKAELLCKEMLAS-GSLPN-QITYGCFLDYLTR---------EGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMG 797 (890)
Q Consensus 729 ~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 797 (890)
..+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++.+++.+..+.|+.+...++.++.-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356789999999832 34554 5556655555432 335677889999999988999999999999988899
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHH
Q 002701 798 KFEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDP---LAYNFLIYGCCIRGEITKAF 873 (890)
Q Consensus 798 ~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~ 873 (890)
+++.|...|+++.. +.||. .+|...++.+.-.|+.++|.+.+++.++ ++|-. ......++.|+..+ .++|+
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 99999999999998 56765 7788888888999999999999999998 88843 33334445677665 67777
Q ss_pred HHHHH
Q 002701 874 ELRDD 878 (890)
Q Consensus 874 ~~~~~ 878 (890)
+++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 77654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.3 Score=41.18 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 002701 190 RTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSN 253 (890)
Q Consensus 190 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (890)
..+|-+.--+...|+++.|.+.|+.+.+.+ +...++.-.-.-.+.--|++.-|.+-|..--+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 345666656677788888888888887776 333444433333444568888887777776655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.2 Score=52.05 Aligned_cols=111 Identities=21% Similarity=0.227 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 002701 717 YTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTM 796 (890)
Q Consensus 717 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 796 (890)
|.+..+.+...+.+++|.-.|+..-+ ..-.+.+|...|++++|..+..++..+...-..+-..|+.-+...
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHc
Confidence 33344444455556666555554411 112334555556666666555554432111112224455555556
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 797 GKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSM 844 (890)
Q Consensus 797 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 844 (890)
++.-+|-++..+.... | ...+..|++...+++|+......
T Consensus 1013 ~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 6666666665555431 1 12233445555566665555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.57 E-value=3.7 Score=48.22 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=38.1
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCC
Q 002701 477 SGYCNEVKLNKAFRLYHEMTGKGIAPNSY--TFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGC 554 (890)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 554 (890)
.+|-..|++.+|+.+..++... -+.. +-..|+.-+...+++-+|-++..+.... | ...+..+|+...
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhH
Confidence 3444556666666665554321 1111 1134555555666666666666555442 1 123344555556
Q ss_pred hHHHHHHHHH
Q 002701 555 MVKAFELLDE 564 (890)
Q Consensus 555 ~~~A~~~~~~ 564 (890)
+++|+.+...
T Consensus 1042 ~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1042 WEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHh
Confidence 6666655444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.56 E-value=3.1 Score=42.18 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCChh---HHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002701 367 YNALINSLCKERKFN---EAEFLFNEMKQKGLSPN-VVTYSILIDSLCRRGEMDIAVSFLGKMADE 428 (890)
Q Consensus 367 ~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 428 (890)
...++.+|...+..+ +|..+++.+.... |+ ...+..-+..+.+.++.+++.+.+.+|+..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344555555554433 3444444444331 22 333334444444456666666666666654
|
It is also involved in sporulation []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.47 Score=41.31 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=25.9
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 760 TREGKMEKAVQLHNAMLDGLLAN---TVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 760 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
.+.|++++|++.|+.+....|.+ ..+-..|+.+|.+.+++++|...+++.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555555555433332 23333455555555555555555555554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.50 E-value=4.7 Score=43.80 Aligned_cols=410 Identities=11% Similarity=0.035 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 002701 365 FVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVV-TYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISG 443 (890)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 443 (890)
..|+.++..--.....+.+...++.+... .|... -|.....-=.+.|..+.+.++|++.+.. ++.++..|......
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 34555554433334445556666666654 45544 2333444445567777777777777654 44455555555444
Q ss_pred HH-hcCChhHHHHHHHHHHHc-CCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---Hhc
Q 002701 444 HC-KLGNLSAAESFFEEMIHK-GLT-PTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGL---CRA 517 (890)
Q Consensus 444 ~~-~~g~~~~A~~~~~~~~~~-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~---~~~ 517 (890)
++ ..|+.+.....|+..... |.. -....|...|..-...+++.....+|+..++. ....++..-.-| .+.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhc
Confidence 43 345666666666666543 211 12334566666666677777777777777764 122222222221 111
Q ss_pred ------CCHHHHHHHHHHHHHC-C---CCCChHHHHHHHHHHH-HcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 002701 518 ------NKLTEAIKWFDEMLER-N---VMPNEVTYNVLIEGYC-REGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCS 586 (890)
Q Consensus 518 ------g~~~~A~~~~~~~~~~-~---~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 586 (890)
-..+++.++-...... . ..+....+..-+..-. ..+..+++...+.+... .--..+-.
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~ 267 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQK 267 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHh
Confidence 1222222222211110 0 0000111111111000 01111111111111110 00011112
Q ss_pred CCChHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002701 587 AGRVSEAKEFVDGLHREHC-------KLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSD 659 (890)
Q Consensus 587 ~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 659 (890)
.-...+.+..++.-++... +++...|...+.-..+.|+.+.+.-+|+...--- ..=...|-..+.-....|+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCc
Confidence 2223333333443333211 2245677777777888888888888887765321 1011223333333333466
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHH---H
Q 002701 660 TRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVV-TYTALINGLCKAGYMDKAE---L 735 (890)
Q Consensus 660 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~---~ 735 (890)
.+-|..++....+--.+..+.+-..-....-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. +
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 66666666555544333332222222222335678999999999888763 4432 2223345566778888777 3
Q ss_pred HHHHHHHCCCCCCHHHHHHHH----H-HHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 002701 736 LCKEMLASGSLPNQITYGCFL----D-YLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMG 797 (890)
Q Consensus 736 ~~~~~~~~~~~p~~~~~~~l~----~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 797 (890)
++....... -+..+...+. . .+.-.++.+.|..++.++.+..|++...|..+++.....+
T Consensus 425 l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 425 LYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 333333221 1111111111 1 1234678888999999998888888888888888766554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.57 Score=45.90 Aligned_cols=151 Identities=17% Similarity=0.036 Sum_probs=96.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHH
Q 002701 722 NGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLAN-TVTYNILIHGFCTMGKFE 800 (890)
Q Consensus 722 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 800 (890)
......|++.+|..+|+...... +-+...-..++.+|...|+.+.|..++..+-.....+ ......-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567788888888888887652 3345566677888888888888888888765422222 222233344555555555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 002701 801 EATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELR 876 (890)
Q Consensus 801 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 876 (890)
+...+-.+.-. .| |...-..+...+...|+.++|.+.+-.++.+...- |...-..++..+.-.|..+.+...+
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 55555555543 34 55666778888888888888888887777643222 5666777777777777544444333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.15 Score=50.07 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=98.9
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHH
Q 002701 760 TREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITY----STIIYQYCKRGYLH 835 (890)
Q Consensus 760 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~~ 835 (890)
-..|++.+|...++++++..|.|..++.--=+++.-.|+.+.-...++++.-. ..||...| ..+.-++.+.|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35788999999999999999999999998889999999999999999999864 34555333 34566778899999
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 836 EALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDDM 879 (890)
Q Consensus 836 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 879 (890)
+|.+..++.++ +.| |......+.+.+--.|+..++.++..+-
T Consensus 193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999 888 7777788889999999999999987653
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.31 E-value=7.3 Score=44.81 Aligned_cols=182 Identities=15% Similarity=0.150 Sum_probs=80.2
Q ss_pred HHHHHHHHHH-CCCCcC--HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCChhHH
Q 002701 383 AEFLFNEMKQ-KGLSPN--VVTYSILIDSLC-RRGEMDIAVSFLGKMADEGIKATI-----YPYNSLISGHCKLGNLSAA 453 (890)
Q Consensus 383 A~~~~~~m~~-~g~~p~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A 453 (890)
|++.++.+.+ ..++|. ..++-.+...+. ...+++.|...+++.....-.++. .....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4455555552 223332 234444455544 355666666666665433212111 11223445555544444 6
Q ss_pred HHHHHHHHHcCCC----CCHhHHHHH-HHHHHccCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHH--hcCCHHHH
Q 002701 454 ESFFEEMIHKGLT----PTVITYTSL-ISGYCNEVKLNKAFRLYHEMTGKG---IAPNSYTFTALISGLC--RANKLTEA 523 (890)
Q Consensus 454 ~~~~~~~~~~~~~----p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~g~~~~A 523 (890)
...+++.++.--. +-...+..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 6666665443111 111122222 111222356666776666655431 2223333333433322 34545556
Q ss_pred HHHHHHHHHCC---------CCCChHHHHHHHHHHH--HcCChHHHHHHHHHH
Q 002701 524 IKWFDEMLERN---------VMPNEVTYNVLIEGYC--REGCMVKAFELLDEM 565 (890)
Q Consensus 524 ~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m 565 (890)
.+.++++.... ..|-..+|..+++.++ ..|++..+.+.++++
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66555553211 1223445555555443 455555555554444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.23 E-value=1 Score=42.32 Aligned_cols=64 Identities=9% Similarity=0.101 Sum_probs=34.1
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 002701 789 LIHGFCTM-GKFEEATKLLGGMMDN--GILPDC---ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD 852 (890)
Q Consensus 789 l~~~~~~~-g~~~~A~~~~~~~~~~--~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 852 (890)
++..|-.. .++++|+..|+..-+. |-..+. ..+......-...|++.+|+.+|++.....+..+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 33444332 5667777777766542 111111 2233333344456778888888888776434433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.071 Score=36.02 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 002701 820 TYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFL 859 (890)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 859 (890)
++..+...|.+.|++++|+++++++++ ..| |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHh
Confidence 455566666666666666666666666 555 44444444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.28 Score=44.25 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CC-------HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC-
Q 002701 765 MEKAVQLHNAMLDGLLANTVTYNILIHGFCTM---GK-------FEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRG- 832 (890)
Q Consensus 765 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~-------~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g- 832 (890)
++.|.+.++......|.|...++..+.++... .. +++|+.-|++++. +.|+. .++..++.+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHh
Confidence 34455555554445566666555554444333 22 2333444444444 55654 55555555554432
Q ss_pred ----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002701 833 ----------YLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGIF 885 (890)
Q Consensus 833 ----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 885 (890)
.+++|...|+++.+ ..|+...|..-+... .+|-++..++.+.|..
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred hcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 25566666777777 778888777666554 3456666666655543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.41 Score=47.34 Aligned_cols=95 Identities=9% Similarity=-0.013 Sum_probs=74.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 002701 160 LIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKD 239 (890)
Q Consensus 160 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (890)
-++.|+++|+|++|++.|.+.....+. +.+++.....+|++...|..|..-...++..+ ..-+.+|+.-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999887665432 77788888889999999999999888888765 3345567777777777788
Q ss_pred hhhHHHHHHHHHhCCCCCC
Q 002701 240 FVKAKEMIHFMDSNGSDLN 258 (890)
Q Consensus 240 ~~~A~~~~~~~~~~~~~~~ 258 (890)
..+|.+-.+..++. .|+
T Consensus 181 ~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHHhHHHHHhh--Ccc
Confidence 88888888887766 455
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.082 Score=35.69 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHH
Q 002701 754 CFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNI 788 (890)
Q Consensus 754 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 788 (890)
.+...|...|++++|+++|+++++..|.|...+..
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 33444444444444444444444444444444433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.60 E-value=3.2 Score=37.15 Aligned_cols=135 Identities=12% Similarity=0.109 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-CCCCCHH---HHHHHH
Q 002701 716 TYTALINGLCKAGYMDKAELLCKEMLASGSLPN-QITYGCFLDYLTREGKMEKAVQLHNAMLD-GLLANTV---TYNILI 790 (890)
Q Consensus 716 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~---~~~~l~ 790 (890)
.|...++ +.+.|..++|+.-|.++.+.|...- ..............|+...|+..|+++-. ...|-+. .-.--.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3433333 3455666777777777666543321 12222233344566777777777777665 2222211 111123
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 002701 791 HGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP 851 (890)
Q Consensus 791 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 851 (890)
..+...|.+++.....+-+...+.+--...-..|.-+-.+.|++.+|.++|..+......|
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 3456667777776666665543322222344566667777777777777777777644455
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.036 Score=34.83 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=22.4
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002701 772 HNAMLDGLLANTVTYNILIHGFCTMGKFEEAT 803 (890)
Q Consensus 772 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 803 (890)
|+++++..|.|..+|+.|+..|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556666777777777777777777777765
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.54 E-value=4.7 Score=39.80 Aligned_cols=54 Identities=17% Similarity=0.109 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 002701 779 LLANTVTYNILIHGFCTMGKFEEATKLLGGMMDN--GILPDCITYSTIIYQYCKRGY 833 (890)
Q Consensus 779 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~ 833 (890)
.|.|...-..++..+...|+.++|++.+-.++.+ |.. |...-..|+..+.--|.
T Consensus 232 dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 232 DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 4445555555666666666666666655555443 222 33444455555555553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.04 Score=34.61 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=21.9
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 002701 841 WDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAF 873 (890)
Q Consensus 841 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 873 (890)
|+++++ +.| +...|..|+..|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 455666 667 6677777777777777777775
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.2 Score=40.73 Aligned_cols=88 Identities=18% Similarity=0.241 Sum_probs=44.0
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 002701 760 TREGKMEKAVQLHNAMLDGLLANT-----VTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGY 833 (890)
Q Consensus 760 ~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 833 (890)
.+.|++++|..-|..++...|+.. +.|..-+-++.+.+.++.|++--.+.++ +.|+. .++..-..+|.+..+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHhhhh
Confidence 345555555555555555433322 2333344455555666666655555555 23322 233333445555555
Q ss_pred HHHHHHHHHHHHhCCCCC
Q 002701 834 LHEALKLWDSMLNKGLKP 851 (890)
Q Consensus 834 ~~~A~~~~~~~~~~g~~p 851 (890)
+++|+.-|+++++ ..|
T Consensus 184 ~eealeDyKki~E--~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILE--SDP 199 (271)
T ss_pred HHHHHHHHHHHHH--hCc
Confidence 6666666666655 445
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.3 Score=45.11 Aligned_cols=16 Identities=19% Similarity=0.246 Sum_probs=8.3
Q ss_pred ChhHHHHHHHHHHHCC
Q 002701 204 QFGLVLKLFEDVVNVG 219 (890)
Q Consensus 204 ~~~~A~~~~~~~~~~~ 219 (890)
-..+|..+|++.++.|
T Consensus 215 Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAG 230 (539)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3455555555555443
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.9 Score=45.50 Aligned_cols=191 Identities=11% Similarity=0.091 Sum_probs=117.0
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHHCC-CCCCHHHHHHHHHHHHhcC
Q 002701 691 KAGNLKEAFRLWDIMIGE--GCVPNVVTYTALINGLCKAGYMDKAELLCKE----MLASG-SLPNQITYGCFLDYLTREG 763 (890)
Q Consensus 691 ~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~-~~p~~~~~~~l~~~~~~~g 763 (890)
...+.++|+..|.+.... +...-..+|..+..+.++.|.+++++..--. ..+.. ..---..|..+..++.+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444332 0011223455556667777777766543221 11110 0011234556667777777
Q ss_pred CHHHHHHHHHHHhc--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHHhcCC
Q 002701 764 KMEKAVQLHNAMLD--GLLA---NTVTYNILIHGFCTMGKFEEATKLLGGMMDNGIL---P--DCITYSTIIYQYCKRGY 833 (890)
Q Consensus 764 ~~~~A~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~g~ 833 (890)
++.+++.+-..-+. +..+ -.....++..+....+.++++++.|+.+....-. | ...++..|...|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 77777776666554 2222 1234455778888889999999999998763111 1 22678899999999999
Q ss_pred HHHHHHHHHHHHh----CCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 834 LHEALKLWDSMLN----KGLKPDP-----LAYNFLIYGCCIRGEITKAFELRDDMMR 881 (890)
Q Consensus 834 ~~~A~~~~~~~~~----~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 881 (890)
+++|.-+..++.+ .|+..-. .+.+++.-+|...|..-+|.+..++..+
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 9999999888766 2222211 2345666779999999999999888765
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.12 E-value=14 Score=42.48 Aligned_cols=57 Identities=25% Similarity=0.113 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 002701 822 STIIYQYCKRGYLHEALKLWDSMLNKGLKP----DPLAYNFLIYG--CCIRGEITKAFELRDD 878 (890)
Q Consensus 822 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 878 (890)
..|+......|+.++|...++++......+ +..+....+.. -...|+.++|.....+
T Consensus 622 ~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 622 SMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 367788888888888888888877632222 33333333333 2356888877777665
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.82 Score=39.44 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 002701 680 VIYTSMIDAKGKAGNLKEAFRLWDIMIGE---------------GCVPNVVTYTALINGLCKAGYMDKAELLCKEMLAS- 743 (890)
Q Consensus 680 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 743 (890)
.++..++.++++.|+++....+.+..-.. ...|+..+..+++.+|+..|++..|+++++...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34445555555555555555544433211 22344444555555555555555555555544433
Q ss_pred CCCCCHHHHHHHHH
Q 002701 744 GSLPNQITYGCFLD 757 (890)
Q Consensus 744 ~~~p~~~~~~~l~~ 757 (890)
+++.+..+|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 33334444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.98 Score=38.98 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 002701 813 GILPDCITYSTIIYQYCKRGYLHEALKLWDSMLN-KGLKPDPLAYNFLIYG 862 (890)
Q Consensus 813 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~ 862 (890)
...|+..++.+++.+|+..|++..|+++.+...+ .+++-+...|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4568888889999999999999999999998877 4666678888888854
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.67 Score=42.28 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=74.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 002701 789 LIHGFCTMGKFEEATKLLGGMMDNGILPD-----CITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD-PLAYNFLIYG 862 (890)
Q Consensus 789 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 862 (890)
-++-+++.|++++|..-|.++++. +++. .+.|..-+.++.+.+.++.|+.-..+.++ +.|. ......-+.+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEA 177 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHH
Confidence 345678899999999999999985 2221 25677778889999999999999999999 7783 3444555778
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 002701 863 CCIRGEITKAFELRDDMMRRG 883 (890)
Q Consensus 863 ~~~~g~~~~A~~~~~~m~~~g 883 (890)
|-+..++++|++-|+++++..
T Consensus 178 yek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhC
Confidence 999999999999999988653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.81 E-value=4.8 Score=36.12 Aligned_cols=136 Identities=18% Similarity=0.079 Sum_probs=88.2
Q ss_pred cHhHHHHHHHHHhhCCCchhHHHHHHHHHHcCCCchHHHHHHHHHHhhcCCCchhhHHHHHHHHHhcCChhHHHHHHHHH
Q 002701 101 STASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLM 180 (890)
Q Consensus 101 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 180 (890)
+-+.|.. +--|++.++.++|...|..+...+...-.+ .+.--.+....+.|+-..|+..|+++
T Consensus 58 sgd~fla-AL~lA~~~k~d~Alaaf~~lektg~g~Ypv----------------LA~mr~at~~a~kgdta~AV~aFdei 120 (221)
T COG4649 58 SGDAFLA-ALKLAQENKTDDALAAFTDLEKTGYGSYPV----------------LARMRAATLLAQKGDTAAAVAAFDEI 120 (221)
T ss_pred chHHHHH-HHHHHHcCCchHHHHHHHHHHhcCCCcchH----------------HHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 4555643 334677788888888888877766432221 12222455667788888888888888
Q ss_pred HhCCCCCCHhhHHHH---HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhC
Q 002701 181 REKHLMPEVRTLSGV---LNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSN 253 (890)
Q Consensus 181 ~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (890)
-.....|.+.-=..- ...+...|.|+......+.+...+-+--...--.|.-+-.+.|++.+|.+.|+.+...
T Consensus 121 a~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 121 AADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 665555555321111 2235677888888887777766554555556666777777888888888888887654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.73 Score=42.75 Aligned_cols=97 Identities=18% Similarity=0.090 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHH
Q 002701 784 VTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC--ITYSTIIYQYCKRGYLHEALKLWDSMLNK---GLKPDPLAYNF 858 (890)
Q Consensus 784 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~ 858 (890)
..+..++..|++.|+.++|++.+.++.+....|.. ..+-.+++.....|++..+.....++... |-+++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34556666667777777777777776665444433 44556666666667777666666665441 11111111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHH
Q 002701 859 LIY--GCCIRGEITKAFELRDDMM 880 (890)
Q Consensus 859 l~~--~~~~~g~~~~A~~~~~~m~ 880 (890)
... .+...|++.+|.+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 2345567777766665443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.8 Score=46.84 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002701 715 VTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFC 794 (890)
Q Consensus 715 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 794 (890)
...+.++.-+.+.|..+.|+++.++-. + -.+...+.|+++.|.++.+. .+++..|..|++...
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~---------~---rFeLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD---------H---RFELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH---------H---HHHHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH---------H---HhHHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHH
Confidence 345666666666677777766543321 1 12233466666666554332 235666777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 795 TMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 795 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
++|+++-|.+.+++..+ +..|+-.|.-.|+.++-.++.+....
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777766666543 44555556666666666666555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.68 E-value=4.1 Score=36.17 Aligned_cols=37 Identities=22% Similarity=0.095 Sum_probs=17.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 002701 689 KGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCK 726 (890)
Q Consensus 689 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 726 (890)
+.+.+.......+++.+...+ ..+....+.++..|++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 334444555555555554443 2344444555555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.63 E-value=15 Score=41.21 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 002701 716 TYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCT 795 (890)
Q Consensus 716 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 795 (890)
+.+--+.-+...|+..+|.++-.+.. .||...|..-+.++...+++++-.++-+.... +.-|.-.+..|.+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-----PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-----PIGYLPFVEACLK 756 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-----CCCchhHHHHHHh
Confidence 44445556778899999999988874 68888888888999999999987666554432 4557778889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 796 MGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSM 844 (890)
Q Consensus 796 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 844 (890)
.|+.+||.+++.+... . .-...+|.+.|++.+|.+..-+-
T Consensus 757 ~~n~~EA~KYiprv~~------l---~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG------L---QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred cccHHHHhhhhhccCC------h---HHHHHHHHHhccHHHHHHHHHHh
Confidence 9999999999877642 1 15677889999999998876553
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.52 E-value=5.1 Score=35.56 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc
Q 002701 403 SILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNE 482 (890)
Q Consensus 403 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 482 (890)
..++..+...+.......+++.+...+. .+...++.++..|++.+ .+.....++. . .+.......+..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 3455555555666666666666666553 45556666666666542 2233333331 1 1222233344555555
Q ss_pred CCHHHHHHHHHHH
Q 002701 483 VKLNKAFRLYHEM 495 (890)
Q Consensus 483 g~~~~A~~~~~~m 495 (890)
+-++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=4.3 Score=37.33 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=45.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002701 757 DYLTREGKMEKAVQLHNAMLDGLLANT----VTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRG 832 (890)
Q Consensus 757 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 832 (890)
..+...|++++|...++..+.. +.|. .+-..|++.....|.+|+|++.++...+.++. ......-++.+...|
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 4455566666666666655541 1111 11223445555666666666666655543221 112233355566666
Q ss_pred CHHHHHHHHHHHHhC
Q 002701 833 YLHEALKLWDSMLNK 847 (890)
Q Consensus 833 ~~~~A~~~~~~~~~~ 847 (890)
+.++|+.-|++.++.
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 666666666666663
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.9 Score=46.53 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 002701 401 TYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYC 480 (890)
Q Consensus 401 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 480 (890)
-.+.++..+-+.|..+.|+++...-.. -.+...+.|+++.|.++.++ .++...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 355555556666666666655432111 12333455666666655432 224556666666666
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCChHHHHH
Q 002701 481 NEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFE 560 (890)
Q Consensus 481 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 560 (890)
+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+....+| -++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665432 4455555666666666666655555544 14444445555566666665
Q ss_pred HHHH
Q 002701 561 LLDE 564 (890)
Q Consensus 561 ~~~~ 564 (890)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.37 E-value=7.4 Score=36.90 Aligned_cols=95 Identities=12% Similarity=0.143 Sum_probs=54.9
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhc---CCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-----
Q 002701 756 LDYLTRE-GKMEKAVQLHNAMLD---GLLANTVTYNILI---HGFCTMGKFEEATKLLGGMMDNGILPDCITYST----- 823 (890)
Q Consensus 756 ~~~~~~~-g~~~~A~~~~~~~~~---~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~----- 823 (890)
...|... .++++|+..|+..-+ +...+...--+++ ..-...+++.+|+++|+++....+..+..-|..
T Consensus 120 aEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyfl 199 (288)
T KOG1586|consen 120 AEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFL 199 (288)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHH
Confidence 3344333 677888888887776 3333332222333 333456899999999999987544433333321
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 002701 824 -IIYQYCKRGYLHEALKLWDSMLNKGLKPD 852 (890)
Q Consensus 824 -l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 852 (890)
-+-++.-.++.-.+...+++-.+ +.|.
T Consensus 200 kAgLChl~~~D~v~a~~ALeky~~--~dP~ 227 (288)
T KOG1586|consen 200 KAGLCHLCKADEVNAQRALEKYQE--LDPA 227 (288)
T ss_pred HHHHHhHhcccHHHHHHHHHHHHh--cCCc
Confidence 12222333566667777777777 6773
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.23 E-value=4 Score=36.47 Aligned_cols=51 Identities=18% Similarity=0.052 Sum_probs=22.4
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 761 REGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 761 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
+.++.+.+..++..+.-.-|..+..-..-++.+...|+|++|+.+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 334444444444444333333333333334444444555555555555443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.10 E-value=5 Score=36.93 Aligned_cols=93 Identities=10% Similarity=0.047 Sum_probs=59.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 002701 789 LIHGFCTMGKFEEATKLLGGMMDNGILPDC--ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIR 866 (890)
Q Consensus 789 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 866 (890)
++..+...|++++|..-++..+...-.-+. .+--.|.+.....|.+++|+..++...+.+. .......-.+.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 455677778888888888877653111111 2224566777788888888888777655222 122234445678888
Q ss_pred CCHHHHHHHHHHHHHCC
Q 002701 867 GEITKAFELRDDMMRRG 883 (890)
Q Consensus 867 g~~~~A~~~~~~m~~~g 883 (890)
|+.++|+.-|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888887765
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.09 E-value=2 Score=39.96 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-------
Q 002701 155 LGFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEV--RTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIY------- 225 (890)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------- 225 (890)
.++.-++..|.+.|+.++|++.|.+++.....+.. ..+-.+++.....+++..+.....++...--..+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46777999999999999999999999876554443 457778888888899999988888876542221111
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHH
Q 002701 226 IHSAVMRSLCELKDFVKAKEMIHFMD 251 (890)
Q Consensus 226 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 251 (890)
+|..+ .+...|+|.+|-+.|-+..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 11111 1233566766666666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.87 E-value=15 Score=39.14 Aligned_cols=163 Identities=12% Similarity=0.107 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002701 677 PDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFL 756 (890)
Q Consensus 677 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 756 (890)
.|.....++++.++..-++.-...+..+|...| .+...|..++..|..+ ..++-..+++++.+..+ .|.+.-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 344455556666666666666666666666654 4555566666666555 44555666666655422 2333334444
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCC---C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 002701 757 DYLTREGKMEKAVQLHNAMLDGLLA---N---TVTYNILIHGFCTMGKFEEATKLLGGMMDN-GILPDCITYSTIIYQYC 829 (890)
Q Consensus 757 ~~~~~~g~~~~A~~~~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 829 (890)
..|.+ ++.+.+..+|.+++...-| + ...|.-|...- ..+.+..+.+..++... |..--.+.+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44433 6666666666666652222 1 11233322211 24455555555555432 22223344555555566
Q ss_pred hcCCHHHHHHHHHHHHh
Q 002701 830 KRGYLHEALKLWDSMLN 846 (890)
Q Consensus 830 ~~g~~~~A~~~~~~~~~ 846 (890)
...++++|++++..+++
T Consensus 217 ~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 217 ENENWTEAIRILKHILE 233 (711)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 66666677666666655
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.76 E-value=8.1 Score=43.66 Aligned_cols=82 Identities=15% Similarity=0.094 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHH-HHHHHH-HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC--
Q 002701 660 TRRYFGLLKEMHDKGLRPDNVIY-TSMIDA-KGKAGNLKEAFRLWDIMIG-------EGCVPNVVTYTALINGLCKAG-- 728 (890)
Q Consensus 660 ~~~A~~~~~~~~~~~~~~~~~~~-~~li~~-~~~~g~~~~A~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~g-- 728 (890)
...|...++...+.|..-..... .....+ +....+.+.|..+|+.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34566666666555422111111 111112 3344566666666665554 23 2223344444444422
Q ss_pred ---ChhHHHHHHHHHHHCC
Q 002701 729 ---YMDKAELLCKEMLASG 744 (890)
Q Consensus 729 ---~~~~A~~~~~~~~~~~ 744 (890)
+.+.|..++.+.-+.|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG 323 (552)
T ss_pred ccccHHHHHHHHHHHHhcC
Confidence 3344555555555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.65 Score=45.98 Aligned_cols=92 Identities=18% Similarity=0.119 Sum_probs=55.5
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002701 758 YLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEA 837 (890)
Q Consensus 758 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 837 (890)
-|.++|.+++|+..|...+...|.|++++..-+.+|.+.+++..|..--+.++... .--...|+.-+.+-...|+.++|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 45667777777777777666666677777777777777776666666555554321 00113444445555555666666
Q ss_pred HHHHHHHHhCCCCCC
Q 002701 838 LKLWDSMLNKGLKPD 852 (890)
Q Consensus 838 ~~~~~~~~~~g~~p~ 852 (890)
.+-++..++ +.|+
T Consensus 185 KkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 185 KKDCETVLA--LEPK 197 (536)
T ss_pred HHhHHHHHh--hCcc
Confidence 666666666 6664
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.3 Score=30.54 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 820 TYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
+|..++.++...|++++|+..++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344555555555555555555555555
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.81 Score=45.27 Aligned_cols=79 Identities=14% Similarity=0.205 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 002701 783 TVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLN-----KGLKPDPLAYN 857 (890)
Q Consensus 783 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~ 857 (890)
..++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 5677888889999999999999999998842 33668899999999999999999999988765 58888888877
Q ss_pred HHHHH
Q 002701 858 FLIYG 862 (890)
Q Consensus 858 ~l~~~ 862 (890)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 76665
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.34 Score=30.22 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 821 YSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 821 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
|..++.++...|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444445555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.2 Score=43.10 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 002701 382 EAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGE 414 (890)
Q Consensus 382 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 414 (890)
=+++++++|...|+.||..+-..|++++.+.+-
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 366777777777777777777777777766554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.4 Score=30.55 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 786 YNILIHGFCTMGKFEEATKLLGGM 809 (890)
Q Consensus 786 ~~~l~~~~~~~g~~~~A~~~~~~~ 809 (890)
|..|+..|.+.|++++|+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555555555555553
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.59 E-value=7.9 Score=33.04 Aligned_cols=57 Identities=23% Similarity=0.189 Sum_probs=21.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 002701 791 HGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKG 848 (890)
Q Consensus 791 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 848 (890)
+.+.++|+-|.-.+++..+... -.|++.....+..+|.+.|+..+|-+++.++-++|
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444321 23334444444444444444444444444444443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.42 Score=30.46 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 821 YSTIIYQYCKRGYLHEALKLWDSML 845 (890)
Q Consensus 821 ~~~l~~~~~~~g~~~~A~~~~~~~~ 845 (890)
|..|+..|.+.|++++|+.++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.46 E-value=29 Score=39.29 Aligned_cols=146 Identities=18% Similarity=0.164 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHhH-HHHHHH-HHccCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC--
Q 002701 275 VFEAVEVKNGFVKRGVKADVVTY-CTLVLG-LCKVQEFEFGVWLMNEMIE-------LGLVPSEAAVSSLVEGFRRKG-- 343 (890)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~-~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-- 343 (890)
..+|+++++...+.|..-..... .....+ +....|.+.|..+|+...+ .+ ...+...++.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34566666666555422111111 111223 4455667777777776655 33 3335566666666533
Q ss_pred ---CHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cC
Q 002701 344 ---KIDDAFNLVNKLGPLGVVPNLFVYNALINSLCK---ERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCR----RG 413 (890)
Q Consensus 344 ---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g 413 (890)
+.+.|..++.+....|. |+.... +...+.. ..+...|.++|....+.|.. .++-.+..+|.. ..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVER 378 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCC
Confidence 55667777777777663 332222 2222221 24566777777777777643 222222222221 23
Q ss_pred CHHHHHHHHHHHHHcC
Q 002701 414 EMDIAVSFLGKMADEG 429 (890)
Q Consensus 414 ~~~~A~~~~~~~~~~~ 429 (890)
+...|..++.+..+.|
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 5667777777777665
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.17 E-value=13 Score=34.80 Aligned_cols=163 Identities=17% Similarity=0.134 Sum_probs=94.0
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHH
Q 002701 675 LRPD-NVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASG-SLPNQITY 752 (890)
Q Consensus 675 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~ 752 (890)
+.|+ +..||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-|..| -.|+++-|.+-+.+.-+.. ..|-...|
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 3444 4578888888889999999999999998875433444444444433 4688888887776665542 23333344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHH
Q 002701 753 GCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD-------CITYSTII 825 (890)
Q Consensus 753 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~ 825 (890)
..+.. ..-+..+|..-+.+-.++....---|+.+-..+ |+.. ...+++++... -..+ ..||--|+
T Consensus 173 LYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL---gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 173 LYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL---GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLG 244 (297)
T ss_pred HHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH---hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHH
Confidence 43332 344666666544443333332222233222222 2221 12233333321 1111 15677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 002701 826 YQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 826 ~~~~~~g~~~~A~~~~~~~~~ 846 (890)
+-+...|+.++|..+|+-.+.
T Consensus 245 K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHhccccHHHHHHHHHHHHH
Confidence 888889999999999988876
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.58 Score=29.23 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002701 784 VTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD 817 (890)
Q Consensus 784 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 817 (890)
.+|..++.++...|++++|+..++++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4677788888888888888888888876 4454
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.92 E-value=14 Score=35.64 Aligned_cols=182 Identities=18% Similarity=0.186 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcCC
Q 002701 693 GNLKEAFRLWDIMIGEGCV---PNVVTYTALINGLCKAGYMDKAELLCKEMLAS---GS--LPNQITYGCFLDYLTREGK 764 (890)
Q Consensus 693 g~~~~A~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~p~~~~~~~l~~~~~~~g~ 764 (890)
.++++|+.-|++.++.... -.-.+...++..+.+.|++++-...+.+++.- .+ .-+....|.+++......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3455555555555543111 11223334455555666666666665555421 11 1234445555555555555
Q ss_pred HHHHHHHHHHHhc--CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----C-------HHHHHHHHHH
Q 002701 765 MEKAVQLHNAMLD--GLLANTV----TYNILIHGFCTMGKFEEATKLLGGMMDNGILP----D-------CITYSTIIYQ 827 (890)
Q Consensus 765 ~~~A~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~-------~~~~~~l~~~ 827 (890)
.+--...|+.-++ ....|.. |-..|+..|...+.+.+-.++++++-...-.. | ..+|..=+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5555555554443 1222222 22346667777777777777766665321110 1 1344445666
Q ss_pred HHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHH----HHHhcCCHHHHHH
Q 002701 828 YCKRGYLHEALKLWDSMLN-KGLKPDPLAYNFLIY----GCCIRGEITKAFE 874 (890)
Q Consensus 828 ~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~----~~~~~g~~~~A~~ 874 (890)
|....+-++-..+|++.+. +.--|.+.+.-.+-. ...+.|++++|-.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 6666666666667776655 333454444332222 2445566666653
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.79 E-value=6.7 Score=35.11 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=42.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q 002701 792 GFCTMGKFEEATKLLGGMMDNGILPDCITYST-IIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 792 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
.-.+.++.+++..++..+.- +.|....... -++.+...|++.+|+.+++++.+
T Consensus 19 ~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34567899999999999987 5677644433 37778899999999999999877
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=3.2 Score=43.35 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=39.7
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002701 760 TREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALK 839 (890)
Q Consensus 760 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 839 (890)
...|+++.+.+.+..+.+.+.....+..++++...+.|++++|....+-|+...++ +..+.....-.--..|-++++.-
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHH
Confidence 34455555555555444433344445555555555555555555555555543332 22222222222223344555555
Q ss_pred HHHHHHh
Q 002701 840 LWDSMLN 846 (890)
Q Consensus 840 ~~~~~~~ 846 (890)
.|+++..
T Consensus 413 ~wk~~~~ 419 (831)
T PRK15180 413 YWKRVLL 419 (831)
T ss_pred HHHHHhc
Confidence 5555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.45 E-value=2.3 Score=41.19 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002701 731 DKAELLCKEMLASGSLPNQITYGCFLDYLTREGK 764 (890)
Q Consensus 731 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 764 (890)
+-++.++++|...|+-||..+-..+++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 4578889999988999999998888888877664
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.24 E-value=23 Score=36.07 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHhHHHHHHHHH--ccCC----hHHHHHHHHHHHHcC
Q 002701 276 FEAVEVKNGFVKRGVKADVVTYCTLVLGLC--KVQE----FEFGVWLMNEMIELG 324 (890)
Q Consensus 276 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~----~~~A~~~~~~~~~~~ 324 (890)
++.+.+++.|.+.|+.-+..+|-+.....- ...+ ...|..+++.|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 345566677777777666665544222211 1222 345566666666553
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.7 Score=28.77 Aligned_cols=32 Identities=19% Similarity=0.475 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002701 784 VTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD 817 (890)
Q Consensus 784 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 817 (890)
..|..++..+...|++++|++.++++++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 4567788888888888888888888876 4443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.21 E-value=3 Score=41.45 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 002701 751 TYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD-----NGILPDCITYSTII 825 (890)
Q Consensus 751 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~ 825 (890)
++..++..+...|+.+.+...++..+...|.+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4555666777788888888888888888888888888888888888888888888887764 47778776666555
Q ss_pred HH
Q 002701 826 YQ 827 (890)
Q Consensus 826 ~~ 827 (890)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.97 E-value=29 Score=36.73 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 002701 713 NVVTYTALINGLCKAGYMDKAELLCKEMLASGSLP---NQITYGCFLDYLTREGKMEKAVQLHNAMLD 777 (890)
Q Consensus 713 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 777 (890)
...+|..++..+.+.|.++.|...+.++...+... +......-+...-..|+..+|+..++..++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566667777777777777777777776532111 223333344555566777777777766665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.57 E-value=12 Score=31.94 Aligned_cols=140 Identities=11% Similarity=0.095 Sum_probs=77.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002701 725 CKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATK 804 (890)
Q Consensus 725 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 804 (890)
.-.|.+++..++..+.... .+..-+|.++--....-+-+-..+.++.+-+.+ |. ..+|+......
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF--Di----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF--DI----------SKCGNLKRVIE 77 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS---G----------GG-S-THHHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc--Cc----------hhhcchHHHHH
Confidence 3457777777777777653 233444444422222233333444444443311 11 12333333333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002701 805 LLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGI 884 (890)
Q Consensus 805 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 884 (890)
-+-.+ ..+.......+..+...|+-+.-.+++..+.+ .-.|++.....++.+|.+.|+..+|-++++++-++|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 22221 11334445567778889999999999998875 2467888999999999999999999999999999997
Q ss_pred C
Q 002701 885 F 885 (890)
Q Consensus 885 ~ 885 (890)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.35 E-value=27 Score=35.58 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC--
Q 002701 696 KEAFRLWDIMIGEGCVPNVVTYTALINGLCK--A----GYMDKAELLCKEMLASGS---LPNQITYGCFLDYLTREGK-- 764 (890)
Q Consensus 696 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~-- 764 (890)
++...+++.|.+.|+..+..+|.+..-.... . ....+|.++++.|.+.-. .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445677778888877777666553332222 1 224567888888876521 1344445444432 3333
Q ss_pred --HHHHHHHHHHHhc-CCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002701 765 --MEKAVQLHNAMLD-GLLANT--VTYNILIHGFCTMGK--FEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEA 837 (890)
Q Consensus 765 --~~~A~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 837 (890)
.+....+|+.+.+ ++..+- .....++........ ...+.++++.+.+.|+++....|..++-...-.+..++.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 2455667777666 554432 222222222211111 446777777787777777776666665444333333344
Q ss_pred HHHHHHH
Q 002701 838 LKLWDSM 844 (890)
Q Consensus 838 ~~~~~~~ 844 (890)
...+.++
T Consensus 237 ~~~i~ev 243 (297)
T PF13170_consen 237 VEEIKEV 243 (297)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.09 E-value=48 Score=38.08 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=21.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 002701 474 SLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRA 517 (890)
Q Consensus 474 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 517 (890)
.+|--|.|.|.+++|.++..+.... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4444555666666666666443322 333344455555555543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.94 E-value=18 Score=32.94 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=16.2
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHHcCChH
Q 002701 526 WFDEMLERNVMPNEVTYNVLIEGYCREGCMV 556 (890)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 556 (890)
.++.+.+.+++|....+..+++.+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3334444555555555555555555555543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.62 E-value=27 Score=37.08 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=74.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhc----CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCCH--
Q 002701 757 DYLTREGKMEKAVQLHNAMLD----GLLA-----NTVTYNILIHGFCTMGKFEEATKLLGGMMD-------NGILPDC-- 818 (890)
Q Consensus 757 ~~~~~~g~~~~A~~~~~~~~~----~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~-- 818 (890)
..+...|++.+|.+++...-- |... .-..||.|+-...+.|.+.-+..+|.++++ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 445667888888887765422 2111 223456777777777888888888877763 3555432
Q ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 002701 819 --------ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIR 866 (890)
Q Consensus 819 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 866 (890)
.+....+-.|...|+.-.|.+.|.+.+.. +..++..|..|+.+|...
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 22334566788899999999999998873 455889999999988643
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.33 E-value=21 Score=33.66 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=33.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 756 LDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 756 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
++.+.+.+.+++|+.+.+.-.+..|.|...-..+...||-.|+|++|..-++-.-+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 34445555666666666655555555555556666666666666666665555544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.23 E-value=96 Score=40.46 Aligned_cols=315 Identities=9% Similarity=-0.008 Sum_probs=162.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHc
Q 002701 475 LISGYCNEVKLNKAFRLYHEMTGKGI--APNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCRE 552 (890)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 552 (890)
+..+-.+.+.+.+|...++.-..... .....-+..+...|...+++|....+...-.. .| .....|-.....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHhh
Confidence 33444577888888888887311100 11223344455588888888887777653111 12 233455666778
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCChHHHHHH
Q 002701 553 GCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSAL-LHGYCKEGRLKDALGA 631 (890)
Q Consensus 553 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~ 631 (890)
|++..|...|+.+.+.+. +...+++.++......|.++..+...+...... .+....++.+ +.+--+.++|+.....
T Consensus 1463 g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 999999999999988642 236677777777778888888887776665543 2222233322 3333566677766555
Q ss_pred HHHHHHcCCCCCHHHHHHH--HHHHHhcC--ChHHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHhcCCHHHH
Q 002701 632 CREMVERGVNMDLVCYSVL--IDGSLKQS--DTRRYFGLLKEMHDKGLRPD---------NVIYTSMIDAKGKAGNLKEA 698 (890)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~l--i~~~~~~~--~~~~A~~~~~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A 698 (890)
.. .+ +..+|... .....+.. +.-.-.+..+.+.+.-+.|= ...|..++....-. +.+
T Consensus 1541 l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~-- 1610 (2382)
T KOG0890|consen 1541 LS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELE-- 1610 (2382)
T ss_pred hh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHH--
Confidence 44 22 22333333 22222221 11111123333322211110 01122222221110 000
Q ss_pred HHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHH-HHCCCCC-----CHHHHHHHHHHHHhcCCHH
Q 002701 699 FRLWDIMIGEGCVPN------VVTYTALINGLCKAGYMDKAELLCKEM-LASGSLP-----NQITYGCFLDYLTREGKME 766 (890)
Q Consensus 699 ~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~p-----~~~~~~~l~~~~~~~g~~~ 766 (890)
...+... +..++ ...|..-+..-....+..+-+--+.+. ......| -..+|...++.....|.++
T Consensus 1611 -~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1611 -NSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred -HHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 0011111 11121 112222211111111122222222221 1111122 2557888888888899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 767 KAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDN 812 (890)
Q Consensus 767 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 812 (890)
.|....-.+.+..+| ..+--.+..+-..|+...|+.++++..+.
T Consensus 1688 ~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999888888774444 34566777788899999999999998864
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.91 E-value=33 Score=34.75 Aligned_cols=29 Identities=24% Similarity=0.042 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 398 NVVTYSILIDSLCRRGEMDIAVSFLGKMAD 427 (890)
Q Consensus 398 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 427 (890)
|...-...+.++.+.|+ ..|+..+-+..+
T Consensus 205 ~~~VR~~A~~aLg~~~~-~~av~~Li~~L~ 233 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD-KRVLSVLIKELK 233 (280)
T ss_pred ChHHHHHHHHHHHccCC-hhHHHHHHHHHc
Confidence 44444444455554444 334444444433
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.83 E-value=30 Score=34.21 Aligned_cols=58 Identities=19% Similarity=0.099 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 368 NALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMA 426 (890)
Q Consensus 368 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 426 (890)
+.....|..+|.+.+|.++-+.....+ +.+...+-.++..+...|+--.|.+-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456667777777777777666642 2355666667777777777666666666554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.75 E-value=11 Score=37.47 Aligned_cols=101 Identities=13% Similarity=0.026 Sum_probs=44.6
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCChhhHHHHHHHHHhCCCCCChh
Q 002701 184 HLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVG---ILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVV 260 (890)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 260 (890)
|...++.+...++.......+.+.+...+-++...- ..++. +-...++.+. .=+.++++-++..=+..|+-||-+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 333444455555544444455666666555554321 01111 1111111111 123344555554445555555555
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHH
Q 002701 261 VYNILIHGLCKSQRVFEAVEVKNGFV 286 (890)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~ 286 (890)
+++.+|+.+.+.+++.+|..+.-.|+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 55555555555555555544444433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.53 E-value=11 Score=33.16 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=43.4
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 750 ITYGCFLDYL---TREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDN 812 (890)
Q Consensus 750 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 812 (890)
.+.+.|++.. ...++.+++..++..+.-..|.....-..-++.+...|+|++|+.+|+++.+.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3444444433 45778888888888776655666665556667777888888888888888764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.53 E-value=55 Score=36.93 Aligned_cols=253 Identities=13% Similarity=0.062 Sum_probs=129.2
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHcCC
Q 002701 479 YCNEVKLNKAFRLYHEMTGKGIAPNSYTFT----ALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGC 554 (890)
Q Consensus 479 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 554 (890)
....|+..+|.+++.-.+-..-. ....|. .+.-++...|.-+.+.+.+...+...-.+....=.+|.-++...|.
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~-~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAG-EGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeeccccchHHHHhhhhCCccCC-CCCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhccc
Confidence 45678888888888877644111 112221 1222333444444566766665554322222222334444444443
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHcCCCh--HHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHH
Q 002701 555 MVKAFELLDEMAGKGLVADTYTY--RSLITGLCSAGRV--SEAKEFVDGLHREHCKLNEMCYS--ALLHGYCKEGRLKDA 628 (890)
Q Consensus 555 ~~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A 628 (890)
-+ .++|+.+.+.-...+..+- ..+..+++..|.. +...+++.-..+-. ...+.. .+.-++.-.|+-++|
T Consensus 446 a~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQ---Heki~RGl~vGiaL~~ygrqe~A 520 (929)
T KOG2062|consen 446 AN--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQ---HEKIIRGLAVGIALVVYGRQEDA 520 (929)
T ss_pred cc--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhh---HHHHHHHHHHhHHHHHhhhhhhh
Confidence 32 3444444332111122211 1233344444432 22223433333221 111122 223345566777888
Q ss_pred HHHHHHHHHcCCCCCHH-H---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002701 629 LGACREMVERGVNMDLV-C---YSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDI 704 (890)
Q Consensus 629 ~~~~~~~~~~~~~~~~~-~---~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 704 (890)
..+.++|.... |+. - .-++..+|+-.|+......++.-... ++..|..-+..+.-++.-..+++....+.+.
T Consensus 521 d~lI~el~~dk---dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~dp~~~~s~V~l 596 (929)
T KOG2062|consen 521 DPLIKELLRDK---DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRDPEQLPSTVSL 596 (929)
T ss_pred HHHHHHHhcCC---chhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecChhhchHHHHH
Confidence 88888887642 222 1 22344567777776655555544343 3455666666666677777888888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHH
Q 002701 705 MIGEGCVPNVVTYTALINGLC-KAGYMDKAELLCKEMLA 742 (890)
Q Consensus 705 ~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 742 (890)
+.+. ..|.+..-.++.-+.+ ..--..+|+.+++-|..
T Consensus 597 Lses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 597 LSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred Hhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 7664 3555554444444332 33346789999998874
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.36 E-value=0.96 Score=28.16 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 821 YSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 821 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
|..++..+...|++++|...|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444445555555555555555444
|
... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.22 E-value=4.8 Score=37.50 Aligned_cols=72 Identities=18% Similarity=0.115 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002701 731 DKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLD----GLLANTVTYNILIHGFCTMGKFEEAT 803 (890)
Q Consensus 731 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~ 803 (890)
++|...|-++...+...+......++..|. ..|.++|+.++..+++ +..+|+..+..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666655544444444444444443 4566666666666665 22445666666666666666666553
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.18 E-value=11 Score=40.91 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002701 341 RKGKIDDAFNLVNKLGPLGVVPNLFVYNALINSLCKERKFNEAEFLFNEM 390 (890)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (890)
+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 344555555444332 23444555666666666666666555543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.37 E-value=9.4 Score=34.82 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002701 765 MEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGK-----------FEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGY 833 (890)
Q Consensus 765 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 833 (890)
+++|+.-|++++...|....++.+++.+|...+. +++|...|+++.+ ..|+...|+.-+...
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~----- 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA----- 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH-----
Confidence 3445555555555556666777777776655432 4556666666665 678888887766554
Q ss_pred HHHHHHHHHHHHhC
Q 002701 834 LHEALKLWDSMLNK 847 (890)
Q Consensus 834 ~~~A~~~~~~~~~~ 847 (890)
++|-++..++.+.
T Consensus 124 -~kap~lh~e~~~~ 136 (186)
T PF06552_consen 124 -AKAPELHMEIHKQ 136 (186)
T ss_dssp -HTHHHHHHHHHHS
T ss_pred -HhhHHHHHHHHHH
Confidence 3456666665553
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.37 E-value=48 Score=35.02 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002701 681 IYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVP---NVVTYTALINGLCKAGYMDKAELLCKEMLA 742 (890)
Q Consensus 681 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 742 (890)
++..+...+.+.|.++.|...+..+...+..+ .+.....-+..+-..|+..+|+..+++.++
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555555555555432111 122222233444455555666665555554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.26 E-value=13 Score=35.54 Aligned_cols=119 Identities=12% Similarity=-0.066 Sum_probs=81.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002701 724 LCKAGYMDKAELLCKEMLASGSLPNQIT-YGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEA 802 (890)
Q Consensus 724 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 802 (890)
|....+++.|+..|.+.+. +.|+..+ |..-+-++.+..+++.+..--.++++..|..+.....++.++.....+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 5556678888888888774 4676644 445566677788888888888888886676777777788888888888889
Q ss_pred HHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 803 TKLLGGMMD----NGILPDCITYSTIIYQYCKRGYLHEALKLWDSM 844 (890)
Q Consensus 803 ~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 844 (890)
++.+.++.. ..+.|....+..|..+-...=...++.++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888843 233444456666655544444455555555444
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.25 E-value=37 Score=33.62 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 820 TYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDDMM 880 (890)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 880 (890)
++......|.+.|.+.+|.++-++.+. +.| +...|..|+..|...|+--+|.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445667788999999999999999998 888 88888999999999999989988888876
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=85.80 E-value=8.6 Score=36.96 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=41.0
Q ss_pred HHhcCCHHHHHHHHHHHhc-----CCCCCH--HHHHHHHHHHHhcCCHH-------HHHHHHHHHHHCCCCCC-----HH
Q 002701 759 LTREGKMEKAVQLHNAMLD-----GLLANT--VTYNILIHGFCTMGKFE-------EATKLLGGMMDNGILPD-----CI 819 (890)
Q Consensus 759 ~~~~g~~~~A~~~~~~~~~-----~~~~~~--~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~p~-----~~ 819 (890)
+.....+++|++.|..++- +.++.. ..+.-++|.|...|+.+ .|++.|++..+..-.|. ..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 4445566677666655543 223332 23444566666666533 23333333333221111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 820 TYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 820 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
..-.++....+.|+.++|.++|.+++.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 222344445555566666666655555
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.53 E-value=7.5 Score=36.26 Aligned_cols=73 Identities=12% Similarity=0.017 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002701 800 EEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNK---GLKPDPLAYNFLIYGCCIRGEITKAF 873 (890)
Q Consensus 800 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~ 873 (890)
++|.+.|-.+...+.--++.....|+.-| ...|.++|+.++.++++. +-.+|+..+..|+..+.+.|++++|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 46666666666554444444444444333 355667777777776651 22456677777777777777777664
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.37 E-value=1.3 Score=44.36 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=57.7
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 002701 761 REGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC-ITYSTIIYQYCKRGYLHEALK 839 (890)
Q Consensus 761 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 839 (890)
..|.+++|++.|...++..|+....|..-..++.+.+++..|++-+....+ +.||. .-|-.-..+..-.|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 456677777777777766666666666666677777777777776666665 44544 233333444445567777777
Q ss_pred HHHHHHhCCCCCCHH
Q 002701 840 LWDSMLNKGLKPDPL 854 (890)
Q Consensus 840 ~~~~~~~~g~~p~~~ 854 (890)
.+....+.++.+...
T Consensus 204 dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 204 DLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHhccccHHHH
Confidence 777776655555433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.15 E-value=48 Score=33.92 Aligned_cols=78 Identities=18% Similarity=0.100 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------
Q 002701 801 EATKLLGGMMDNGILPDCITYSTIIYQYCK----RGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRG--------- 867 (890)
Q Consensus 801 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g--------- 867 (890)
.|...+.++...+ +......|...|.. ..+.++|..+|++..+.|. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhc
Confidence 5666666666544 33334444444332 2256666666666666443 33333333 444444
Q ss_pred ------CHHHHHHHHHHHHHCCCC
Q 002701 868 ------EITKAFELRDDMMRRGIF 885 (890)
Q Consensus 868 ------~~~~A~~~~~~m~~~g~~ 885 (890)
+...|..++......|..
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCh
Confidence 666666666666655543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.05 E-value=76 Score=36.18 Aligned_cols=55 Identities=24% Similarity=0.176 Sum_probs=26.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 002701 372 NSLCKERKFNEAEFLFNEMKQKGLSPN---VVTYSILIDSLCRRGEMDIAVSFLGKMADE 428 (890)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 428 (890)
+-+.+.+.+++|+++.+..... .|. .......|..+.-.|++++|-...-.|...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn 421 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN 421 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc
Confidence 3344555555555554433322 221 123344455555555666655555555443
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.04 E-value=74 Score=36.01 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=81.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 002701 723 GLCKAGYMDKAELLCKEMLASGSLPNQI--TYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFE 800 (890)
Q Consensus 723 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 800 (890)
++..-|+-++|..+.++|.... .|-.. -..+++-+|+-.|+-....+++.-+......|+.-.-.++-++.-..+.+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh
Confidence 4556688889999999998653 22111 12345567788888888888887777655566666666666777778888
Q ss_pred HHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 801 EATKLLGGMMDNGILPDC--ITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 801 ~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
....+.+-+.+. ..|.. -+--.|+-+|.-.|+ .+|+.+++-|..
T Consensus 589 ~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 589 QLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 888877777664 44444 223455666666664 789999998876
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.00 E-value=1.6 Score=27.07 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 784 VTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 784 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567778888888888888888888776
|
... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.84 E-value=4.1 Score=40.25 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 002701 640 VNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKG---LRP--DNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNV 714 (890)
Q Consensus 640 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 714 (890)
.+....+...++..-....+++.+..++-++...- ..+ +..++..++ ..-++++++..+..=+..|+-||.
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccch
Confidence 33344444444444444555555555555544321 111 112222222 122444555555555555555555
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002701 715 VTYTALINGLCKAGYMDKAELLCKEMLA 742 (890)
Q Consensus 715 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 742 (890)
.+++.+++.+.+.+++.+|.++...|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5555555555555555555555555543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.55 E-value=51 Score=33.73 Aligned_cols=84 Identities=12% Similarity=-0.034 Sum_probs=42.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----
Q 002701 165 VQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKI----RQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCE---- 236 (890)
Q Consensus 165 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 236 (890)
...+.+..|...+......+ +......+...+... .+..+|..+|..+.+.|.. .....+...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCc
Confidence 45567777777777766533 123333333333322 2456677777766555521 223334444433
Q ss_pred cCChhhHHHHHHHHHhCC
Q 002701 237 LKDFVKAKEMIHFMDSNG 254 (890)
Q Consensus 237 ~g~~~~A~~~~~~~~~~~ 254 (890)
..+..+|..++++.-+.|
T Consensus 126 ~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 126 PLDLVKALKYYEKAAKLG 143 (292)
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 225555555555555554
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.47 E-value=56 Score=34.11 Aligned_cols=96 Identities=10% Similarity=0.159 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC---------CCCC
Q 002701 155 LGFDLLIQSYVQNKRVADGVFVFRLMREKHLM--PEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVG---------ILPD 223 (890)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~ 223 (890)
.+..-++..|...|+++.|++.|-+++..... ..+..|-.++.+..-.|+|.....+-.++.+.. +++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 46777999999999999999999997654221 223446667777778899888888877776541 2233
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHh
Q 002701 224 IYIHSAVMRSLCELKDFVKAKEMIHFMDS 252 (890)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 252 (890)
...+..+.+.. .+++..|.+.|-....
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEF 257 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCC
Confidence 33344444333 3366666666655443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.20 E-value=29 Score=30.65 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=49.2
Q ss_pred HHHHHHHHH---HhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 002701 716 TYTALINGL---CKAGYMDKAELLCKEMLASGSLPNQITYG-CFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIH 791 (890)
Q Consensus 716 ~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 791 (890)
..+.|++.. ...++.+++..+++.|.- +.|+..... .-...+...|++.+|+++++.+.++-+..+..--.+..
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 344444433 357888999999988874 355433222 22344578899999999999988744333433344444
Q ss_pred HHHhcCC
Q 002701 792 GFCTMGK 798 (890)
Q Consensus 792 ~~~~~g~ 798 (890)
++...|+
T Consensus 87 CL~al~D 93 (153)
T TIGR02561 87 CLNAKGD 93 (153)
T ss_pred HHHhcCC
Confidence 5544454
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.17 E-value=51 Score=33.41 Aligned_cols=137 Identities=18% Similarity=0.027 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002701 712 PNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREG-KMEKAVQLHNAMLDGLLANTVTYNILI 790 (890)
Q Consensus 712 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~ 790 (890)
++...-...+.++.+.|+ ++|+..+-.+++. +|..+-...+.++...+ +.+.+...+..++. .++..+-..-+
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~ 213 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAI 213 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHH
Confidence 355555566666666665 5666666666642 34444444445554432 23455555555554 34566666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002701 791 HGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAYNFLIYGC 863 (890)
Q Consensus 791 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 863 (890)
.++.+.|+ +.|+..+-+..+.+ + .....+.++.+.|.. +|+..+.++.+ -.||..+-...+++|
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHH
Confidence 77777777 46777666666532 2 234567777777774 68888888876 455665555544444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.14 E-value=33 Score=31.26 Aligned_cols=29 Identities=28% Similarity=0.511 Sum_probs=14.8
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 002701 388 NEMKQKGLSPNVVTYSILIDSLCRRGEMD 416 (890)
Q Consensus 388 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 416 (890)
+.+.+.+++|+...+..+++.+.+.|++.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33344455555555555555555555543
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.80 E-value=2.2 Score=28.62 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002701 858 FLIYGCCIRGEITKAFELRDDMMRRG 883 (890)
Q Consensus 858 ~l~~~~~~~g~~~~A~~~~~~m~~~g 883 (890)
.|+.+|...|+.+.|++++++++..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 56777788888888888888777554
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.55 E-value=2.7 Score=27.56 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002701 785 TYNILIHGFCTMGKFEEATKLLGGMM 810 (890)
Q Consensus 785 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 810 (890)
+++.|+..|...|++++|..+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.09 E-value=2.8 Score=27.44 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002701 819 ITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 819 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
.+++.|+..|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777665
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.99 E-value=1.6 Score=26.79 Aligned_cols=32 Identities=16% Similarity=0.042 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhhCCCchhHHHHHHHHHHcCCC
Q 002701 103 ASFCILIHGLVQNNLFWPASSLLQTLLLRGLS 134 (890)
Q Consensus 103 ~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~ 134 (890)
+++..++.++...|++++|...++.++...|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 35678899999999999999999999988774
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.80 E-value=22 Score=37.74 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=79.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HCC--CCCC---HHHHHHHHHHH
Q 002701 757 DYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMM---DNG--ILPD---CITYSTIIYQY 828 (890)
Q Consensus 757 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~p~---~~~~~~l~~~~ 828 (890)
.++....++..+.+-.+.+...-..++.....-...+...|++.+|.+++...- +.| +.|. ...|+.|+-.+
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh 293 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIH 293 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEe
Confidence 334444445555444444433122333333344456677899999999886653 112 1232 24568888888
Q ss_pred HhcCCHHHHHHHHHHHHh-------CCCCCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002701 829 CKRGYLHEALKLWDSMLN-------KGLKPDP----------LAYNFLIYGCCIRGEITKAFELRDDMMR 881 (890)
Q Consensus 829 ~~~g~~~~A~~~~~~~~~-------~g~~p~~----------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 881 (890)
++.|.+.-+..+|.++++ .|++|.. .+.+...-.|...|+.-.|.+-|.+...
T Consensus 294 ~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 294 YQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 889999888888888774 5766632 2334555668899999999998887763
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.79 E-value=64 Score=33.54 Aligned_cols=99 Identities=7% Similarity=-0.048 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 002701 711 VPNVVTYTALINGLCKAGY------------MDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDG 778 (890)
Q Consensus 711 ~p~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 778 (890)
+-|+.+|..++..--..-. .+.-+.++++.++.+ +.+...+..++..+.+..+.++..+.+++++..
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3467777777654322211 233445555555542 234444445555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 002701 779 LLANTVTYNILIHGFCT---MGKFEEATKLLGGMM 810 (890)
Q Consensus 779 ~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 810 (890)
.|.+...|...++.... .-.+++...+|.+.+
T Consensus 95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 55555555555544332 123445555555443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.65 E-value=75 Score=34.26 Aligned_cols=164 Identities=13% Similarity=0.083 Sum_probs=76.7
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002701 538 NEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLH 617 (890)
Q Consensus 538 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 617 (890)
|.....+++..+..+.+..-...+..+|...| .+...|..++.+|... ..+.-..+++++.+..+. |.+.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445556666666666666666666666543 3455566666666555 344455555555554322 3333333333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 002701 618 GYCKEGRLKDALGACREMVERGVNM-----DLVCYSVLIDGSLKQSDTRRYFGLLKEMHDK-GLRPDNVIYTSMIDAKGK 691 (890)
Q Consensus 618 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 691 (890)
.|-+ ++.+.+...|.++..+-++. -...|..+... -..+.+..+.+..++... |..--.+.+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 55666666666655442210 00122222210 123334444444444322 333333344444444555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 002701 692 AGNLKEAFRLWDIMIGE 708 (890)
Q Consensus 692 ~g~~~~A~~~~~~~~~~ 708 (890)
..++++|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 55555555555555444
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.00 E-value=1e+02 Score=35.43 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=10.5
Q ss_pred HhcCCHHHHHHHHHHH
Q 002701 760 TREGKMEKAVQLHNAM 775 (890)
Q Consensus 760 ~~~g~~~~A~~~~~~~ 775 (890)
...|++++|++.+++.
T Consensus 516 ~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 516 YHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHTT-HHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 5677788877766654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.52 E-value=2.4 Score=25.98 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=9.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 002701 825 IYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 825 ~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
+.++.+.|++++|...|+++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3334444444444444444433
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.35 E-value=21 Score=34.21 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=78.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHH
Q 002701 689 KGKAGNLKEAFRLWDIMIGEGCVPNVVT-YTALINGLCKAGYMDKAELLCKEMLASGSLPNQITY-GCFLDYLTREGKME 766 (890)
Q Consensus 689 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~ 766 (890)
|....+++.|+..|.+.+.. .|+..+ |+.-+..+.+..+++.+..--.+.++ +.||.+.- ..+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 44567789999988888776 577644 55667778888899988887777764 57776544 44556667788899
Q ss_pred HHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002701 767 KAVQLHNAMLD-----GLLANTVTYNILIHGFCTMGKFEEATKLLGGM 809 (890)
Q Consensus 767 ~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 809 (890)
+|+..+.++.. ..++-......|..+--+.=...++..+.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99999998854 33444555666665544444444444444443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.19 E-value=0.16 Score=45.50 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=25.7
Q ss_pred HHHHHHccCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 002701 230 VMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKN 283 (890)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 283 (890)
+++.+.+.+.+.....+++.+.+.+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444445555555555555544433344455555555555544444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=80.28 E-value=36 Score=32.79 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 002701 787 NILIHGFCTMGKFEEATKLLGGMMDN 812 (890)
Q Consensus 787 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 812 (890)
..++....+.|+.++|.+.|.++...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 33445555556666666666666643
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.14 E-value=11 Score=30.24 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=21.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 002701 734 ELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAML 776 (890)
Q Consensus 734 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 776 (890)
.+-++.+....+.|+..+..+.+.+|.+.+|+..|+++++.+.
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.02 E-value=3.3 Score=43.66 Aligned_cols=103 Identities=16% Similarity=0.028 Sum_probs=56.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 002701 722 NGLCKAGYMDKAELLCKEMLASGSLPNQITYGCF-LDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFE 800 (890)
Q Consensus 722 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 800 (890)
+-+...+.++.|+.++.+.++. .||-..|... ..++.+.+++..|+.-+.++++..|.....|.--+.++.+.+++.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 3344556666666666666643 4543333222 245556666666666666666644555555555555555666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002701 801 EATKLLGGMMDNGILPDCITYSTIIYQY 828 (890)
Q Consensus 801 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 828 (890)
+|+..|+.... +.|+..-....+.-|
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 66666666555 455554444444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 92.6 bits (228), Expect = 3e-19
Identities = 27/183 (14%), Positives = 69/183 (37%), Gaps = 4/183 (2%)
Query: 318 NEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKL---GPLGVVPNLFVYNALINSL 374
+ + L + + + + ++ A +L+ + L +YNA++
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 375 CKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVS-FLGKMADEGIKAT 433
++ F E ++ +K GL+P++++Y+ + + R+ + + L +M+ EG+K
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
Query: 434 IYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYH 493
L+S + L A P + + L+ + +L+
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295
Query: 494 EMT 496
+
Sbjct: 296 PLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 91.8 bits (226), Expect = 4e-19
Identities = 24/178 (13%), Positives = 55/178 (30%), Gaps = 4/178 (2%)
Query: 449 NLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRL---YHEMTGKGIAPNSY 505
+L ++ + L+ + +L A L +H K
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 506 TFTALISGLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFE-LLDE 564
+ A++ G R E + + + + P+ ++Y ++ R+ E L++
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 565 MAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCKE 622
M+ +GL L++ A + + + S LL +
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.5 bits (220), Expect = 3e-18
Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 4/208 (1%)
Query: 362 PNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSF 421
P L+ + + + + Q LS ++ +A
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 422 L---GKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISG 478
L + T+ YN+++ G + G + GLTP +++Y + +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 479 YCNEVKLNKAF-RLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIKWFDEMLERNVMP 537
+ + R +M+ +G+ + L+S RA L K +P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 538 NEVTYNVLIEGYCREGCMVKAFELLDEM 565
V + L+ + V +L +
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.2 bits (201), Expect = 4e-16
Identities = 28/212 (13%), Positives = 59/212 (27%), Gaps = 5/212 (2%)
Query: 606 KLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFG 665
E + LL + L + + ++ L
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 666 LLKEMHD---KGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALIN 722
LL H K +Y +++ + G KE + ++ G P++++Y A +
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 723 GLCKAG-YMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLH-NAMLDGLL 780
+ + E ++M G + L R ++ ++ L L
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 781 ANTVTYNILIHGFCTMGKFEEATKLLGGMMDN 812
V + L+ KL +
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.8 bits (200), Expect = 6e-16
Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 5/183 (2%)
Query: 712 PNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQL 771
P L+ +D + + + Q F ++ A L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 772 ----HNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQ 827
H L YN ++ G+ G F+E +L + D G+ PD ++Y+ +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 828 YCKRG-YLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGIFP 886
++ + + M +GLK L L+ + +++ P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 887 SLV 889
V
Sbjct: 270 PPV 272
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.8 bits (200), Expect = 6e-16
Identities = 23/222 (10%), Positives = 54/222 (24%), Gaps = 5/222 (2%)
Query: 666 LLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLC 725
L P ++ +L A
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 726 KAGYMDKAELL---CKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAML-DGLLA 781
+ A L L Y + R+G ++ V + + GL
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 782 NTVTYNILIHGFCTMGKFEEA-TKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKL 840
+ ++Y + + + L M G+ + + ++ + + L K+
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 841 WDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRR 882
+ P P+ + L+ + +L +
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.4 bits (186), Expect = 3e-14
Identities = 27/200 (13%), Positives = 68/200 (34%), Gaps = 4/200 (2%)
Query: 537 PNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEF 596
P E L++ + + + + L + ++ A
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 597 VDGLHR---EHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDG 653
+ H + L Y+A++ G+ ++G K+ + + + G+ DL+ Y+ +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 654 SLKQSDTRRYFG-LLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVP 712
+Q L++M +GL+ + ++ + +A LK ++ +P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 713 NVVTYTALINGLCKAGYMDK 732
V + L+ +
Sbjct: 270 PPVNTSKLLRDVYAKDGRVS 289
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.8 bits (161), Expect = 3e-11
Identities = 24/207 (11%), Positives = 58/207 (28%), Gaps = 4/207 (1%)
Query: 180 MREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKD 239
R+ P L+ +L + + A +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 240 FVKAKEMI---HFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVT 296
A ++ H L + +YN ++ G + E V V G+ D+++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 297 YCTLVLGLCKVQEFEFGVW-LMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKL 355
Y + + + + + + +M + GL + L+ R + +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 356 GPLGVVPNLFVYNALINSLCKERKFNE 382
+P + L+ + +
Sbjct: 263 SLPPQLPPPVNTSKLLRDVYAKDGRVS 289
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.9 bits (138), Expect = 1e-08
Identities = 16/164 (9%), Positives = 52/164 (31%), Gaps = 4/164 (2%)
Query: 287 KRGVKADVVTYCTLVLGLCKVQEFE---FGVWLMNEMIELGLVPSEAAVSSLVEGFRRKG 343
+ + + + + + + + + ++++ G+ R+G
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179
Query: 344 KIDDAFNLVNKLGPLGVVPNLFVYNALINSLCK-ERKFNEAEFLFNEMKQKGLSPNVVTY 402
+ ++ + G+ P+L Y A + + + ++ E +M Q+GL +
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239
Query: 403 SILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCK 446
++L+ R + + + L+
Sbjct: 240 AVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 3e-13
Identities = 97/609 (15%), Positives = 176/609 (28%), Gaps = 194/609 (31%)
Query: 305 CK-VQEFEFGVWLMNEMIE--LGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVV 361
CK VQ+ + L E I+ + + + L K + +V K +
Sbjct: 35 CKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-----EMVQKFVEEVLR 88
Query: 362 PNLFVYNALINSL---CKERKFNEAEF------LFNEMKQKGLSPNVVT----YSILIDS 408
N Y L++ + ++ + L+N+ + + V+ Y L +
Sbjct: 89 IN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKYNVSRLQPYLKLRQA 143
Query: 409 LCR-RGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEEMIHKGLTP 467
L R ++ + G + G K + A + + +
Sbjct: 144 LLELRPAKNVLID--G-VLGSG-KTWV-----------------ALDVCLSYKVQCKM-D 181
Query: 468 TVITYTSLISGYCNEVK--LNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEAIK 525
I + +L CN + L +L +++ PN +T+ +I+
Sbjct: 182 FKIFWLNL--KNCNSPETVLEMLQKLLYQID-----PN---WTSRSDHSSNIKLRIHSIQ 231
Query: 526 -WFDEMLERNVMPNE--VTYNVLIEGYCREGCMVKAFE-----LL---DEMAGKGLVADT 574
+L+ N V NV + AF LL + L A T
Sbjct: 232 AELRRLLKSKPYENCLLVLLNV------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 575 YTYRSLI---TGLCSAGRVSEAKEF--------VDGLHREHCKLNEMCYSALLHGYCKEG 623
T+ SL L E K L RE N S +
Sbjct: 286 TTHISLDHHSMTLTP----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-------- 333
Query: 624 RLKDALGA-CREMVERGVNMDLVCYSVL---IDGSLKQ---SDTRRYFGLLKEMHDKGLR 676
R+ + N V L I+ SL ++ R+ F +
Sbjct: 334 ------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF------DRLSVF 381
Query: 677 PDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELL 736
P + +++ L +W +I V VV N L K
Sbjct: 382 PPSAHIPTIL--------LS---LIWFDVIKS-DVMVVV------NKLHK---------- 413
Query: 737 CKEMLASGSLPNQIT-YGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCT 795
++ + I+ +L+ K+E LH +++D YNI F +
Sbjct: 414 -YSLVEKQPKESTISIPSIYLELKV---KLENEYALHRSIVD-------HYNIP-KTFDS 461
Query: 796 MGKFEEATKLLGGMMDNGILPDCI-TYSTIIYQYCKRGYLH----EALKLWDSMLNKGLK 850
+ ++P + Y Y + G+ H E + +
Sbjct: 462 ----------------DDLIPPYLDQY---FYSHI--GH-HLKNIEHPERMT-LFRMVF- 497
Query: 851 PDPLAYNFL 859
L + FL
Sbjct: 498 ---LDFRFL 503
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 4e-09
Identities = 98/679 (14%), Positives = 200/679 (29%), Gaps = 248/679 (36%)
Query: 137 EAFDSLFDCYE-----KFGFSSS----------------LGFDLLIQSYVQNKRVADGVF 175
+AF FDC + K S F L+ + + + F
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS---KQEEMVQ-KF 82
Query: 176 VFRLMREKH--LMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGIL---PDIYIHSAV 230
V ++R + LM ++T + RQ ++ +++ + + L ++ V
Sbjct: 83 VEEVLRINYKFLMSPIKT---------EQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNV 131
Query: 231 MRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGV 290
R L+ ++K ++ + + N+LI G+ G K
Sbjct: 132 SR----LQPYLKLRQALLELRPAK--------NVLIDGV-------------LGSGKT-- 164
Query: 291 KADVVTYCTLVLGLC---KVQE-FEFGV-WLMNEMIELGLVPSEAAVSSLVEGFRRKGKI 345
+ L +C KVQ +F + WL +
Sbjct: 165 --------WVALDVCLSYKVQCKMDFKIFWL---------------------NLKNCNSP 195
Query: 346 DDAFNLVNKLGPLGVVPNLFVYNALINSLCKER-KFNEAE-----FLFNEMKQKGLSPNV 399
+ ++ KL + PN + + + + + + + L ++ + L
Sbjct: 196 ETVLEMLQKL-LYQIDPN---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---- 247
Query: 400 VTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLISGHCKL----------GN 449
+++ ++ + +F + CK+
Sbjct: 248 ----LVLLNVQNAKAWN---AF--------------------NLSCKILLTTRFKQVTDF 280
Query: 450 LSAAESFFEEMIH--KGLTPTVITYT-SLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYT 506
LSAA + + H LTP SL+ Y + + L E+ P
Sbjct: 281 LSAATTTHISLDHHSMTLTP---DEVKSLLLKYLD----CRPQDLPREV--LTTNP---R 328
Query: 507 FTALISGLCR-------------ANKLTEAIKWFDEMLERN----------VMPNEV--T 541
++I+ R +KLT I+ +LE V P
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 542 YNVL------IEGYCREGCMVKAFELLDEMAGKGLVA---DTYTYRSLITGLCSAGRVSE 592
+L + +++++ LV T I + +V
Sbjct: 389 TILLSLIWFDVIKSDVM-------VVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKL 439
Query: 593 AKEFVDGLHREHCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLID 652
E+ LHR + + Y+ + + + + L D YS +
Sbjct: 440 ENEYA--LHR---SIVD-HYN-IPKTFDSDDLIPPYL-------------DQYFYSHI-- 477
Query: 653 GS-LKQSDTRRYFGLLKEMH------DKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIM 705
G LK + L + + ++ +R D ++ +A G N + + +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD----STAWNASGSILNTLQQLKFYKPY 533
Query: 706 IGEGCVPNVVTYTALINGL 724
I N Y L+N +
Sbjct: 534 I----CDNDPKYERLVNAI 548
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 6e-09
Identities = 80/538 (14%), Positives = 162/538 (30%), Gaps = 138/538 (25%)
Query: 10 VTSLKFHYKRRNLCT------HRPFYSDNDEKESQFIDTLEKIIRGKQSWKLALDDAVLS 63
++ +K ++ ++ T Y+DN + L+ L L A+L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY--------LKLRQALLE 146
Query: 64 TALKPHH---VE------K-VL-IQTLDDSRLALRFFNFLGLH-KTFNHSTASFCILIHG 111
L+P ++ K + + ++ +F + + + +L
Sbjct: 147 --LRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDF-KIFWLNLKNCNSPETVLEM- 201
Query: 112 LVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVA 171
L + + + K S+ + S LL+ VQN +
Sbjct: 202 --LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 172 DGVFVFR---LM--REKH----LMPEVRT---LSGVLNGLVKIRQFGLVLKLFEDVVNVG 219
+ F L+ R K L T L L V L ++
Sbjct: 260 N-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----DEVKSLLLKYLDCR 314
Query: 220 I--LPD--IYIHSAVMRSLC--ELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQ 273
LP + + + S+ ++D + + ++ N L ++ + L
Sbjct: 315 PQDLPREVLTTNPRRL-SIIAESIRDGLATWD--NWKHVNCDKLTTIIESSL-------- 363
Query: 274 RVFEAVEVKNGFVKRGV-KADV-VTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAA 331
V E E + F + V + L L +W ++ +V ++
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-----------IWFDVIKSDVMVVVNKLH 412
Query: 332 VSSLVEG-------------FRRKGKID----------DAFNLVNKLGPLGVVPNL---F 365
SLVE K K++ D +N+ ++P +
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 366 VYNAL---INSLCKERKFNEAE--FL-FNEMKQK----GLSPNVV-----------TYSI 404
Y+ + + ++ + FL F ++QK + N Y
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 405 LIDSLCRRGEM---DIAVSFLGKMADEGIKATIYPYNSLISGHCKLGNLSAAESFFEE 459
I + E I + FL K+ + I Y L+ ++ ++ E+ FEE
Sbjct: 533 YICDNDPKYERLVNAI-LDFLPKIEENLI---CSKYTDLL----RIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 8e-05
Identities = 70/480 (14%), Positives = 134/480 (27%), Gaps = 178/480 (37%)
Query: 450 LSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTA 509
LS E + +I + ++ T + L+K + + + + N Y F
Sbjct: 46 LSKEE--IDHIIM---SKDAVSGTLRLFW----TLLSKQEEMVQKFVEEVLRIN-YKF-- 93
Query: 510 LISGLCRANKLTEAI-KWFDEMLERNVMPNEVT----YNVLIEGYCREGCMVKAFELLDE 564
L+S + + + + + E +R+ + N+ YNV R +K + L E
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQVFAKYNV-----SRLQPYLKLRQALLE 146
Query: 565 -----------MAGKG---LVADTYTYRSLITGLC------SAGRVSEAKEFVDGLHREH 604
+ G G + D + + + + + ++
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE------ 200
Query: 605 CKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYF 664
L ++ Y + + + N+ L +S+ Q++ RR
Sbjct: 201 -MLQKLLYQ-IDPNWT-------------SRSDHSSNIKLRIHSI-------QAELRRLL 238
Query: 665 GLLKEMHDKGLRP-DNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALING 723
+ ++ L NV +
Sbjct: 239 --KSKPYENCLLVLLNV---------------------QN--------AKAW-------- 259
Query: 724 LCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANT 783
A + L CK +L +T TR K V D L A T
Sbjct: 260 --NA--FN---LSCK-IL--------LT--------TRF----KQV------TDFLSAAT 285
Query: 784 VTYNILIHGFCTMGKFEEATKLLGGMMDNGI--LPDCITYSTIIYQYCKRGYLHEALK-- 839
T+ L H T+ +E LL +D LP E L
Sbjct: 286 TTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLP------------------REVLTTN 326
Query: 840 -LWDSMLNKGLKPDPLAY-NFLIYGCCIRGEITKAF--ELRDDMMRR-----GIFPSLVK 890
S++ + ++ + N+ C I ++ L R+ +FP
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 890 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.004
Identities = 53/365 (14%), Positives = 102/365 (27%), Gaps = 13/365 (3%)
Query: 444 HCKLGNLSAAESFFEEMIHKGLTPT-VITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAP 502
+ G+ AAE ++ P L S + +L+++ I
Sbjct: 9 EYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFST----LAIKQ 62
Query: 503 NSYTFTALIS-GLCRANKLTEAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFEL 561
N A + G + + P+ + + + ++
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 562 LDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHREHCKLNEMCYSALLHGYCK 621
A + L L + GR+ EAK + L +
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN-LGCVFNA 181
Query: 622 EGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVI 681
+G + A+ + V N L Y L + + R +
Sbjct: 182 QGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV-V 239
Query: 682 YTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEML 741
+ ++ + G + A + I E Y L N L + G + +AE L
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAI-ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 742 ASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEE 801
+ +G +E+AV+L+ L+ ++ L GK +E
Sbjct: 299 RLCPTHADSLN-NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
Query: 802 ATKLL 806
A
Sbjct: 358 ALMHY 362
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 890 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.83 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.83 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.65 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.65 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.61 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.57 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.55 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.51 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.48 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.12 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.11 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.05 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.03 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.99 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.98 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.81 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.79 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.78 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.64 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.63 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.58 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.57 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.57 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.56 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.51 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.42 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.42 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.41 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.4 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.4 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.31 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.11 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.05 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.92 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.56 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.38 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.04 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.51 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.5e-28 Score=179.41 Aligned_cols=378 Identities=16% Similarity=0.078 Sum_probs=183.4
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99529923899999999976999788579999999871699889999999996499898988899999999935999999
Q 002701 444 HCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLTEA 523 (890)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 523 (890)
+.+.|++++|...++++.+..+. +...+..+...+.+.|++++|...+++.++.. +.+..++..+...+...|++++|
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 99869999999999999986899-89999999999998699999999999999859-99899999999996420002222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99999998779998968999999999972996799999999943999999999999999998079957999999999775
Q 002701 524 IKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLHRE 603 (890)
Q Consensus 524 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 603 (890)
...+....... +................+....+............. ...............+....+...+......
T Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 22222121122-222222222222222222222222221112222222-2222222222221100013567888874025
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 99878888999999999459948999999999885998899989999999982599479999999998779997789999
Q 002701 604 HCKLNEMCYSALLHGYCKEGRLKDALGACREMVERGVNMDLVCYSVLIDGSLKQSDTRRYFGLLKEMHDKGLRPDNVIYT 683 (890)
Q Consensus 604 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 683 (890)
.+ .+...+..+...+...|+++.|...+....... +.+...+.
T Consensus 165 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------------------------p~~~~~~~ 207 (388)
T d1w3ba_ 165 QP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD------------------------------------PNFLDAYI 207 (388)
T ss_dssp CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHH
T ss_pred CC-CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC------------------------------------CCCHHHHH
T ss_conf 86-106899863630102471999999999999849------------------------------------46499999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999981199999999999999689998998899999999952996699999999987899988887999999999359
Q 002701 684 SMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREG 763 (890)
Q Consensus 684 ~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 763 (890)
.+...+...|++++|...++.....+ +.+...+..+...+...|++++|+..+++.++.. +.+..++..++..+...|
T Consensus 208 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 285 (388)
T d1w3ba_ 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
T ss_conf 97155220052999999999857775-5479999999999998789999999999999849-998999999999999748
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 998999999999529998889999999999914998999999999887998877-7889999999996199989999999
Q 002701 764 KMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD-CITYSTIIYQYCKRGYLHEALKLWD 842 (890)
Q Consensus 764 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 842 (890)
++++|...++......|.+...+..++..+...|++++|++.++++++. .|+ ..++..++.++...|++++|+..++
T Consensus 286 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 7999999998654048730010157999999878999999999999986--88989999999999998599999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHHCCC
Q ss_conf 998599999-99889999999982399
Q 002701 843 SMLNKGLKP-DPLAYNFLIYGCCIRGE 868 (890)
Q Consensus 843 ~~~~~g~~p-~~~~~~~l~~~~~~~g~ 868 (890)
++++ +.| +...|..++.+|.+.||
T Consensus 364 ~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 364 EAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHH--HCCCCHHHHHHHHHHHHHCCC
T ss_conf 9997--099989999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-27 Score=173.93 Aligned_cols=138 Identities=19% Similarity=0.151 Sum_probs=57.0
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 11999999999999996899989988999999999529966999999999878999888879999999993599989999
Q 002701 691 KAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQ 770 (890)
Q Consensus 691 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 770 (890)
..|++++|...|++..+.. +.+...+..+...+...|++++|+..++..... .+.+...+..+...+...|++++|+.
T Consensus 249 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 326 (388)
T d1w3ba_ 249 EQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 8789999999999999849-998999999999999748799999999865404-87300101579999998789999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCC
Q ss_conf 99999529998889999999999914998999999999887998877-788999999999619
Q 002701 771 LHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD-CITYSTIIYQYCKRG 832 (890)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 832 (890)
.++++++..|.+..++..++.++...|++++|++.++++++ +.|+ ..+|..++.+|.+.|
T Consensus 327 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCC
T ss_conf 99999986889899999999999985999999999999997--09998999999999999858
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=6.6e-17 Score=113.49 Aligned_cols=88 Identities=10% Similarity=0.007 Sum_probs=30.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 99995399337999999988589998874599999999942994289999999997799977997999999998039952
Q 002701 162 QSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFV 241 (890)
Q Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (890)
..+.+.|++++|+..|+++.+..+. +..++..+..++...|+++.|...|.++.+.. +.+...+..++.++...|+++
T Consensus 27 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 27 LRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999859999999999999986899-89999999999998377588999998510022-222222222222222222112
Q ss_pred HHHHHHHHHH
Q ss_conf 6999999987
Q 002701 242 KAKEMIHFMD 251 (890)
Q Consensus 242 ~A~~~~~~~~ 251 (890)
+|.+.++.+.
T Consensus 105 ~A~~~~~~~~ 114 (323)
T d1fcha_ 105 QACEILRDWL 114 (323)
T ss_dssp HHHHHHHHHH
T ss_pred CCCCCHHHHH
T ss_conf 1110002677
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=6.4e-17 Score=113.60 Aligned_cols=96 Identities=18% Similarity=0.083 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q ss_conf 88799999999935999899999999952999888999999999991499899999999988799887-77889999999
Q 002701 749 QITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILP-DCITYSTIIYQ 827 (890)
Q Consensus 749 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 827 (890)
..++..+...+...|++++|+..+++.+...|.+..+|..++..+...|++++|++.++++++. .| +..+|..++.+
T Consensus 172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 249 (323)
T d1fcha_ 172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGIS 249 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH--HHCCHHHHHHHHHH
T ss_conf 2111036888888887755002111222222222111013330122111101378887789988--43249999999999
Q ss_pred HHHCCCHHHHHHHHHHHHH
Q ss_conf 9961999899999999985
Q 002701 828 YCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 828 ~~~~g~~~~A~~~~~~~~~ 846 (890)
|...|++++|+..++++++
T Consensus 250 ~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 250 CINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
T ss_conf 9987899999999999997
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=9.4e-13 Score=88.63 Aligned_cols=198 Identities=9% Similarity=-0.011 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHH
Q ss_conf 76899999999608992459999999998199935789998997753099864569999999995399-33799999998
Q 002701 102 TASFCILIHGLVQNNLFWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKR-VADGVFVFRLM 180 (890)
Q Consensus 102 ~~~~~~~~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~ 180 (890)
..++..++.++...+++++|..+++.++..+|.. ..+|...+.++...|+ +++|+..++++
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~------------------~~a~~~r~~~l~~l~~~~~eal~~~~~a 104 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN------------------YTVWHFRRVLLKSLQKDLHEEMNYITAI 104 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999995886699999999999879887------------------6999999999998376799999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 85899988745999999999429942899999999977999779979999999980399526999999987589998854
Q 002701 181 REKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVV 260 (890)
Q Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 260 (890)
....+. +..+++.+..++.+.|++++|...++++.+.. +.+..+|..++..+.+.|++++|.+.++++++.+ +.+..
T Consensus 105 l~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~ 181 (315)
T d2h6fa1 105 IEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNS 181 (315)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHH
T ss_conf 988774-22689887588885053788998875554321-0046889988778888886678999999999879-74499
Q ss_pred HHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 59999999980499------458999999997789997787699999997704994789999999998
Q 002701 261 VYNILIHGLCKSQR------VFEAVEVKNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIE 322 (890)
Q Consensus 261 ~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 322 (890)
.|+.+...+.+.++ +++|+..+.+..+.. +.+...|..+... +.....+++...++...+
T Consensus 182 a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~l-l~~~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 182 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGI-LQDRGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH-HTTTCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHH-HHHCCHHHHHHHHHHHHH
T ss_conf 99889999987456310235477679999999849-8856999998779-886271889999999997
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=6.1e-12 Score=83.76 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=5.9
Q ss_pred HHHCCCHHHHHHHHHHH
Q ss_conf 99249978899999986
Q 002701 339 FRRKGKIDDAFNLVNKL 355 (890)
Q Consensus 339 ~~~~g~~~~A~~~~~~~ 355 (890)
+...|+.++|...++..
T Consensus 223 ~~~~~~~~~a~~~~~~~ 239 (366)
T d1hz4a_ 223 WQMTGDKAAAANWLRHT 239 (366)
T ss_dssp HHHTTCHHHHHHHHHHS
T ss_pred HHHCCCHHHHHHHHHHH
T ss_conf 98604489899999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1e-12 Score=88.44 Aligned_cols=147 Identities=7% Similarity=-0.034 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 5699999999953993379999999885899988745999999999429-942899999999977999779979999999
Q 002701 155 LGFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIR-QFGLVLKLFEDVVNVGILPDIYIHSAVMRS 233 (890)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (890)
.+++.++..+.+.+++++|+..++++.+..+. +..+|+....++...| ++++|...++.+.+.. +.+..+|..++.+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 99999999999588669999999999987988-769999999999983767999999999999887-7422689887588
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 980399526999999987589998854599999999804994589999999977899977876999999977
Q 002701 234 LCELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTYCTLVLGLC 305 (890)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 305 (890)
+.+.|++++|++.+.++.+.. +.+...|..+...+.+.|++++|++.++++.+.. +.+...|+.+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVIS 191 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 885053788998875554321-0046889988778888886678999999999879-744999988999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=9.9e-14 Score=94.49 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=4.0
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9998999999999
Q 002701 832 GYLHEALKLWDSM 844 (890)
Q Consensus 832 g~~~~A~~~~~~~ 844 (890)
|++++|+..++++
T Consensus 290 ~~~~eA~~~~~~a 302 (334)
T d1dcea1 290 LYEKETLQYFSTL 302 (334)
T ss_dssp GGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 9999999999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=3.5e-11 Score=79.24 Aligned_cols=167 Identities=10% Similarity=0.092 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 89999999999811999999999999996899989988999999999529966999999999878999888879999999
Q 002701 679 NVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDY 758 (890)
Q Consensus 679 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 758 (890)
...+...+......|+.+.|..+|+.+...........|...+....+.|+.+.|..+|+++++.. +.+...+...+..
T Consensus 99 ~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~ 177 (308)
T d2onda1 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_conf 999999999998613389999999999987157869999999999998278688999999999808-8867999999999
Q ss_pred -HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHCCCH
Q ss_conf -9935999899999999952999888999999999991499899999999988799-8877--78899999999961999
Q 002701 759 -LTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNG-ILPD--CITYSTIIYQYCKRGYL 834 (890)
Q Consensus 759 -~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~ 834 (890)
+...|+.+.|..+|+.+++..|.++..|...+..+...|+.+.|..+|+++.... ..|+ ...|...+.--...|+.
T Consensus 178 e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~ 257 (308)
T d2onda1 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 98765577899999999998610038899999999998698689999999999827898689999999999999984999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999985
Q 002701 835 HEALKLWDSMLN 846 (890)
Q Consensus 835 ~~A~~~~~~~~~ 846 (890)
+.+..+.+++.+
T Consensus 258 ~~~~~~~~r~~~ 269 (308)
T d2onda1 258 ASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=6e-13 Score=89.81 Aligned_cols=41 Identities=5% Similarity=-0.168 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 039952699999998758999885459999999980499458
Q 002701 236 ELKDFVKAKEMIHFMDSNGSDLNVVVYNILIHGLCKSQRVFE 277 (890)
Q Consensus 236 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 277 (890)
..+.+++|...++.+++.. +.+...|+.+...+.+.|++++
T Consensus 156 ~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 156 AAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp TCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HCCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHH
T ss_conf 4455289999999988718-9879999999999998268898
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=8.4e-12 Score=82.95 Aligned_cols=96 Identities=11% Similarity=-0.116 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 69999999995399337999999988589998874599999999942994289999999997799977997999999998
Q 002701 156 GFDLLIQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLC 235 (890)
Q Consensus 156 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (890)
++..++.+|.+.|++++|+..|+++....+. ++.+++.+..++.+.|++++|...|+++.+.. +.+..++..++.++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 9999999999879999999999985434999-88999600427888777887523446899987-611115888999999
Q ss_pred CCCCHHHHHHHHHHHHHC
Q ss_conf 039952699999998758
Q 002701 236 ELKDFVKAKEMIHFMDSN 253 (890)
Q Consensus 236 ~~g~~~~A~~~~~~~~~~ 253 (890)
..|++++|...|+...+.
T Consensus 117 ~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 876679999999999865
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=7.2e-09 Score=65.36 Aligned_cols=86 Identities=9% Similarity=-0.082 Sum_probs=33.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 99999539933799999998858999887459999999994299428999999999779997799799999999803995
Q 002701 161 IQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDF 240 (890)
Q Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (890)
+..+...|+++.|+..|.++. .++...+..+..++...|+++.|...|+++++.+ +.+...|..++.++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHCC----CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCH
T ss_conf 999998779999999998648----9889999999999998589146787899999985-52346678899999854249
Q ss_pred HHHHHHHHHHH
Q ss_conf 26999999987
Q 002701 241 VKAKEMIHFMD 251 (890)
Q Consensus 241 ~~A~~~~~~~~ 251 (890)
++|...|++..
T Consensus 87 ~~A~~~~~kAl 97 (192)
T d1hh8a_ 87 DLAIKDLKEAL 97 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=4.9e-09 Score=66.39 Aligned_cols=252 Identities=8% Similarity=-0.035 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCCCCHHHH
Q ss_conf 245999999999819993578999899775309986456999999999539933799999998858-----999887459
Q 002701 118 FWPASSLLQTLLLRGLSPKEAFDSLFDCYEKFGFSSSLGFDLLIQSYVQNKRVADGVFVFRLMREK-----HLMPEVRTL 192 (890)
Q Consensus 118 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~ 192 (890)
..++..++.+...........+..+.......-......|.-.+..|...+++++|+..|.++.+. .......++
T Consensus 1 ~~~~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~ 80 (290)
T d1qqea_ 1 ISDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTY 80 (290)
T ss_dssp CCCHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99899999999986473246998853776436999999999999999988699999999999999998759988999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCCCCHHH-----
Q ss_conf 9999999942994289999999997799977-----99799999999803-995269999999875899988545-----
Q 002701 193 SGVLNGLVKIRQFGLVLKLFEDVVNVGILPD-----IYIHSAVMRSLCEL-KDFVKAKEMIHFMDSNGSDLNVVV----- 261 (890)
Q Consensus 193 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~----- 261 (890)
..+..++.+.|++++|...|++........+ ..++..++..+... |++++|.+.+.++.+.....+...
T Consensus 81 ~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~ 160 (290)
T d1qqea_ 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999808858889999976677653253205899999988867647878999988999999998733760333468
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHH----H
Q ss_conf 999999998049945899999999778999778769------999999770499478999999999859998998----8
Q 002701 262 YNILIHGLCKSQRVFEAVEVKNGFVKRGVKADVVTY------CTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEA----A 331 (890)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~ 331 (890)
+..+...+...|++++|+..+++............+ ...+..+...++++.|...++...+........ .
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~ 240 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNF 240 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 89999999981739999999999998681332455569999999999999846599999999999975977444399999
Q ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999992--49978899999986669988689989999999
Q 002701 332 VSSLVEGFRR--KGKIDDAFNLVNKLGPLGVVPNLFVYNALINS 373 (890)
Q Consensus 332 ~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 373 (890)
...++.++-. .+.+++|...|+++.+ .|......+...
T Consensus 241 l~~l~~a~~~~d~e~~~eai~~y~~~~~----lD~~~~~~L~~~ 280 (290)
T d1qqea_ 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMR----LDKWKITILNKI 280 (290)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHTTSSC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHH----CCHHHHHHHHHH
T ss_conf 9999999983689999999999988754----689999999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=3.6e-08 Score=61.17 Aligned_cols=120 Identities=13% Similarity=-0.045 Sum_probs=61.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99952996699999999987899988887999999999359998999999999529998889999999999914998999
Q 002701 723 GLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEA 802 (890)
Q Consensus 723 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 802 (890)
.+...|++++|++.|+++ .+|+..++..++.++...|++++|+..|+++++..|.++..|..++.++.+.|++++|
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 999877999999999864----8988999999999999858914678789999998552346678899999854249999
Q ss_pred HHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999887998--------------877-78899999999961999899999999985
Q 002701 803 TKLLGGMMDNGI--------------LPD-CITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 803 ~~~~~~~~~~~~--------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
++.+++++.... .+. ..++..++.++...|++++|...+++++.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999867267367899866543630588999999999997899999999999983
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=1.1e-09 Score=70.29 Aligned_cols=88 Identities=7% Similarity=0.019 Sum_probs=30.5
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 99999539933799999998858999887459999999994299428999999999779997799799999999803995
Q 002701 161 IQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDF 240 (890)
Q Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (890)
|..|++.|++++|+..|.++....+. +...++.+..++.+.|+++.|...|+++++.. +.+..+|..++.++...|++
T Consensus 11 Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~~l~~~ 88 (201)
T d2c2la1 11 GNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESY 88 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
T ss_conf 99999869999999999999985999-89999817898741000001247888888718-87389999999999987999
Q ss_pred HHHHHHHHHH
Q ss_conf 2699999998
Q 002701 241 VKAKEMIHFM 250 (890)
Q Consensus 241 ~~A~~~~~~~ 250 (890)
++|...|+++
T Consensus 89 ~~A~~~~~~a 98 (201)
T d2c2la1 89 DEAIANLQRA 98 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.99 E-value=1e-08 Score=64.47 Aligned_cols=98 Identities=10% Similarity=-0.073 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 88745999999999429942899999999977999779979999999980399526999999987589998854599999
Q 002701 187 PEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDFVKAKEMIHFMDSNGSDLNVVVYNILI 266 (890)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 266 (890)
|++..+...++.+++.|+++.|...|++++... |.+...|..++.+|.+.|++++|...|.++++.. +.+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_conf 649999999999998699999999999999859-9989999817898741000001247888888718-87389999999
Q ss_pred HHHHCCCCHHHHHHHHHHHH
Q ss_conf 99980499458999999997
Q 002701 267 HGLCKSQRVFEAVEVKNGFV 286 (890)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~ 286 (890)
.+|.+.|++++|+..+++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
T ss_conf 99998799999999999998
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=2e-08 Score=62.71 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=49.1
Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHH
Q ss_conf 9999359998999999999529998889999999999914998999999999887998877-788999999999619998
Q 002701 757 DYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD-CITYSTIIYQYCKRGYLH 835 (890)
Q Consensus 757 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 835 (890)
..+.+.|++++|+..|+++++..|.+...|..++.++...|++++|+..++++++. .|+ ..+|..++.++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHH
T ss_conf 99999589999999866021100011333245678887405421288889999987--5446687799999999949999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHH
Q ss_conf 9999999998599999-99889999
Q 002701 836 EALKLWDSMLNKGLKP-DPLAYNFL 859 (890)
Q Consensus 836 ~A~~~~~~~~~~g~~p-~~~~~~~l 859 (890)
+|...+++++. +.| +...+..+
T Consensus 96 eA~~~~~~a~~--~~p~~~~~~~~l 118 (159)
T d1a17a_ 96 AALRDYETVVK--VKPHDKDAKMKY 118 (159)
T ss_dssp HHHHHHHHHHH--HSTTCHHHHHHH
T ss_pred HHHHHHHHHHH--CCCCCHHHHHHH
T ss_conf 99998999987--299979999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=7.4e-08 Score=59.30 Aligned_cols=103 Identities=16% Similarity=0.048 Sum_probs=70.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999935999899999999952999888999999999991499899999999988799887778899999999961999
Q 002701 755 FLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYL 834 (890)
Q Consensus 755 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 834 (890)
-+..+...|++++|+..|+.+++..|.++..|..++.++...|++++|+..++++++.. +.+...|..++.++...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCH
T ss_conf 99999996999999999999886199601343000110110000112100134677740-22026778899999981279
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHH
Q ss_conf 89999999998599999-998899999
Q 002701 835 HEALKLWDSMLNKGLKP-DPLAYNFLI 860 (890)
Q Consensus 835 ~~A~~~~~~~~~~g~~p-~~~~~~~l~ 860 (890)
++|+..++++++ ..| ++..+..+.
T Consensus 88 ~~A~~~~~~a~~--~~p~~~~~~~~l~ 112 (117)
T d1elwa_ 88 EEAKRTYEEGLK--HEANNPQLKEGLQ 112 (117)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_conf 999999999998--4989899999999
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=2.2e-07 Score=56.46 Aligned_cols=91 Identities=11% Similarity=0.009 Sum_probs=35.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 99999539933799999998858999887459999999994299428999999999779997799799999999803995
Q 002701 161 IQSYVQNKRVADGVFVFRLMREKHLMPEVRTLSGVLNGLVKIRQFGLVLKLFEDVVNVGILPDIYIHSAVMRSLCELKDF 240 (890)
Q Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (890)
++.|++.|++++|+..|.++....+. +...+..+..++...|+++.|...|+.+++.. +.+..+|..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
T ss_conf 99999958999999986602110001-13332456788874054212888899999875-44668779999999994999
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 2699999998758
Q 002701 241 VKAKEMIHFMDSN 253 (890)
Q Consensus 241 ~~A~~~~~~~~~~ 253 (890)
++|...+++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999989999872
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=4e-09 Score=66.87 Aligned_cols=211 Identities=9% Similarity=-0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999987799977899999999998119999999999999968999899889999999995299669999999998
Q 002701 662 RYFGLLKEMHDKGLRPDNVIYTSMIDAKGKAGNLKEAFRLWDIMIGEGCVPNVVTYTALINGLCKAGYMDKAELLCKEML 741 (890)
Q Consensus 662 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 741 (890)
+|.+.++++.... +.....+..+..++...+++++| |++++.. .-......-+....-...+..+++.++...
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKVEQDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCHHHHH---HHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999998719-99799995199999997629999---9999874---930199985799999999999999999856
Q ss_pred HC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-
Q ss_conf 78--999888879999999993599989999999995299988899999999999149989999999998879988777-
Q 002701 742 AS--GSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDC- 818 (890)
Q Consensus 742 ~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 818 (890)
+. ...................+.++.|+..+....+..+++...+..++..+.+.|+.++|...++.... ++.
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~~~ 152 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS----YICQ 152 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHH----HHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC----CCHH
T ss_conf 164584379999999999999999999999999998789911399999857998758999999999998827----8899
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 889999999996199989999999998599999-9988999999998239978999999999977999
Q 002701 819 ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIRGEITKAFELRDDMMRRGIF 885 (890)
Q Consensus 819 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 885 (890)
.++..++..+...|++++|...++++++ +.| +...|..++..+...|+..+|...+.+.+....+
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~ 218 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 9999999999980247899999999998--78996599999999999869999999999999817999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.78 E-value=2.7e-06 Score=50.00 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=8.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999953993379999999885
Q 002701 160 LIQSYVQNKRVADGVFVFRLMRE 182 (890)
Q Consensus 160 l~~~~~~~~~~~~A~~~~~~~~~ 182 (890)
|+..+...+++.+|+..|+++.+
T Consensus 8 lG~~~~~~~d~~~A~~~~~kAa~ 30 (265)
T d1ouva_ 8 LGAKSYKEKDFTQAKKYFEKACD 30 (265)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999987799999999999997
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=4.9e-07 Score=54.41 Aligned_cols=58 Identities=10% Similarity=-0.089 Sum_probs=21.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999991499899999999988799887-778899999999961999899999999985
Q 002701 787 NILIHGFCTMGKFEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLN 846 (890)
Q Consensus 787 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 846 (890)
+.++.+|.+.|++++|+..+++++.. .| +..++..++.++...|++++|+..++++++
T Consensus 66 ~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 66 LNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988642110110000000100--223103467779999872229999999999997
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=5.1e-07 Score=54.29 Aligned_cols=88 Identities=17% Similarity=0.130 Sum_probs=34.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99952996699999999987899988887999999999359998999999999529998889999999999914998999
Q 002701 723 GLCKAGYMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEA 802 (890)
Q Consensus 723 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 802 (890)
.+...|++++|+..|++.++.. +.+...|..++.++...|++++|+..+..+++..|.++..|..++.++...|++++|
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 9999699999999999988619-960134300011011000011210013467774022026778899999981279999
Q ss_pred HHHHHHHHH
Q ss_conf 999999887
Q 002701 803 TKLLGGMMD 811 (890)
Q Consensus 803 ~~~~~~~~~ 811 (890)
+..++++.+
T Consensus 91 ~~~~~~a~~ 99 (117)
T d1elwa_ 91 KRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
T ss_conf 999999998
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.7e-07 Score=57.19 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=78.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q ss_conf 9999999935999899999999952999888999999999991499---89999999998879988777-8899999999
Q 002701 753 GCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGK---FEEATKLLGGMMDNGILPDC-ITYSTIIYQY 828 (890)
Q Consensus 753 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~ 828 (890)
..+++.+...+++++|.+.|++.++..|.++.++..+++++.+.++ .++|+.+++++......|+. .++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 77988736999999999999998832999899999999999985126789999999999986069931999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 96199989999999998599999998
Q 002701 829 CKRGYLHEALKLWDSMLNKGLKPDPL 854 (890)
Q Consensus 829 ~~~g~~~~A~~~~~~~~~~g~~p~~~ 854 (890)
.+.|++++|+..|+++++ +.|+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHHHHHHH--HCCCCH
T ss_conf 997316999999999997--690989
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.63 E-value=3.1e-06 Score=49.62 Aligned_cols=75 Identities=8% Similarity=0.000 Sum_probs=32.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q ss_conf 999999999149989999999998879988777889999999996199989999999998599999-998899999999
Q 002701 786 YNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGC 863 (890)
Q Consensus 786 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 863 (890)
|..++.+|.+.|++++|+..+++++... +.+..+|..++.++...|++++|...++++++ +.| +..+...+....
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
T ss_conf 9849999877622011000223222013-10488999889999882789999999999998--5989899999999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.8e-06 Score=49.85 Aligned_cols=57 Identities=12% Similarity=0.016 Sum_probs=22.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999359998999999999529998889999999999914998999999999887
Q 002701 755 FLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 755 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
++.+|.+.|++++|+..++.+++..|.++.++..++.++...|++++|+..++++.+
T Consensus 68 la~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 68 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999988642110110000000100223103467779999872229999999999997
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.57 E-value=4.1e-07 Score=54.89 Aligned_cols=87 Identities=10% Similarity=-0.001 Sum_probs=41.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHC
Q ss_conf 9999991499899999999988799887-77889999999996199989999999998599999-998899999999823
Q 002701 789 LIHGFCTMGKFEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLIYGCCIR 866 (890)
Q Consensus 789 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 866 (890)
++..+.+.|++++|+..+++++.. .| +..+|..++.++.+.|++++|+..++++++ +.| +...|..++.+|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCHHHHHHHHHHC
T ss_conf 999999876058999988610112--111100123354564101258774100000111--1110000037899999997
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9978999999999
Q 002701 867 GEITKAFELRDDM 879 (890)
Q Consensus 867 g~~~~A~~~~~~m 879 (890)
|++++|.+.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 8999999999998
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.57 E-value=1e-06 Score=52.42 Aligned_cols=79 Identities=9% Similarity=-0.086 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q ss_conf 8899999999999149989999999998879988777889999999996199989999999998599999-998899999
Q 002701 782 NTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPDCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFLI 860 (890)
Q Consensus 782 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 860 (890)
....+..++.++.+.|++++|+..++++++.. +.+..+|..++.++...|++++|+..++++++ +.| +..+...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l~ 152 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_conf 39999989999986402101366655443100-02236777699999980479999999999998--5989999999999
Q ss_pred HHH
Q ss_conf 999
Q 002701 861 YGC 863 (890)
Q Consensus 861 ~~~ 863 (890)
.+.
T Consensus 153 ~~~ 155 (169)
T d1ihga1 153 KVK 155 (169)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1e-06 Score=52.48 Aligned_cols=101 Identities=11% Similarity=0.110 Sum_probs=61.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC--------HHHHHH
Q ss_conf 999999999359998999999999529998889999999999914998999999999887998877--------788999
Q 002701 752 YGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILPD--------CITYST 823 (890)
Q Consensus 752 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~~~~ 823 (890)
+..+...+...|++++|+..|.++++..|.+..++..++.+|...|++++|++.++++++. .|+ ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH
T ss_conf 9999999998599999999999998849645899986889998818607789999999986--80127889889999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 999999619998999999999859999999889
Q 002701 824 IIYQYCKRGYLHEALKLWDSMLNKGLKPDPLAY 856 (890)
Q Consensus 824 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 856 (890)
++..+...+++++|+..+++.+. ..|+....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 115 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVL 115 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHH--CCCCHHHH
T ss_conf 99999993889999999999984--59999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.56 E-value=1.4e-06 Score=51.61 Aligned_cols=71 Identities=13% Similarity=0.023 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q ss_conf 99999999991499899999999988799887-77889999999996199989999999998599999-99889999
Q 002701 785 TYNILIHGFCTMGKFEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNFL 859 (890)
Q Consensus 785 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 859 (890)
++..++.+|.+.|++++|++.++++++. .| +..+|..++.++...|++++|+..++++++ +.| +..+...+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l 141 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_conf 9961999999846530111010001000--000012467768999996899999999999998--298989999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.51 E-value=6.9e-07 Score=53.49 Aligned_cols=87 Identities=11% Similarity=-0.049 Sum_probs=41.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCH
Q ss_conf 9999935999899999999952999888999999999991499899999999988799887-778899999999961999
Q 002701 756 LDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMDNGILP-DCITYSTIIYQYCKRGYL 834 (890)
Q Consensus 756 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 834 (890)
+..+.+.|++++|+..++++++..|.++.+|..++.++.+.|++++|+..++++++ +.| +...|..++.++...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCHHHHHHHHHHCCCH
T ss_conf 99999876058999988610112111100123354564101258774100000111--1110000037899999997899
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999999
Q 002701 835 HEALKLWDSM 844 (890)
Q Consensus 835 ~~A~~~~~~~ 844 (890)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.42 E-value=6e-06 Score=47.86 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=5.2
Q ss_pred HHCCCHHHHHHHHHHH
Q ss_conf 9539933799999998
Q 002701 165 VQNKRVADGVFVFRLM 180 (890)
Q Consensus 165 ~~~~~~~~A~~~~~~~ 180 (890)
...|++++|...|.++
T Consensus 22 ~~~g~~e~A~~~~~~A 37 (179)
T d2ff4a2 22 AAAGRFEQASRHLSAA 37 (179)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
T ss_conf 9887999999999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.42 E-value=5e-07 Score=54.35 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 59998999999999529998889999999999914998999999999887
Q 002701 762 EGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 762 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
.|++++|+..+++.++..|.+...+..++..++..|++++|.+.++.+.+
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 88999999999999997899999999999999987999999999999998
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.41 E-value=5.8e-06 Score=47.97 Aligned_cols=61 Identities=13% Similarity=0.006 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7999999999359998999999999529998889999999999914998999999999887
Q 002701 751 TYGCFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 751 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
.+..+..++.+.|++++|+..++.+++..|.++.+|..++.++...|++++|+..++++++
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9998999998640210136665544310002236777699999980479999999999998
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.41 E-value=1.5e-05 Score=45.44 Aligned_cols=58 Identities=17% Similarity=0.048 Sum_probs=23.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999359998999999999529998889999999999914998999999999887
Q 002701 754 CFLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 754 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
.++.++.+.|++++|+..++.+++..|.+..+|..++.++...|++++|+..++++.+
T Consensus 72 Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 72 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 1999999846530111010001000000012467768999996899999999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.40 E-value=1.6e-05 Score=45.35 Aligned_cols=57 Identities=18% Similarity=0.049 Sum_probs=25.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999359998999999999529998889999999999914998999999999887
Q 002701 755 FLDYLTREGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 755 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
+..++.+.|++++|+..++.+++..|.+..+|..++.++...|++++|+..+++++.
T Consensus 70 la~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 70 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999987762201100022322201310488999889999882789999999999998
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.40 E-value=8.8e-07 Score=52.89 Aligned_cols=114 Identities=15% Similarity=0.073 Sum_probs=56.4
Q ss_pred HCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q ss_conf 359998999999999529998889999999999914----------998999999999887998877-788999999999
Q 002701 761 REGKMEKAVQLHNAMLDGLLANTVTYNILIHGFCTM----------GKFEEATKLLGGMMDNGILPD-CITYSTIIYQYC 829 (890)
Q Consensus 761 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 829 (890)
+.+.+++|+..++.+++..|.++.++..++.++... +.+++|+..++++++ +.|+ ..+|..++.+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHH
T ss_conf 8736999999999998618831089999999998762133336778878889999999887--30120587766899998
Q ss_pred HCC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 619-----------9989999999998599999998899999999823997899999999997799
Q 002701 830 KRG-----------YLHEALKLWDSMLNKGLKPDPLAYNFLIYGCCIRGEITKAFELRDDMMRRGI 884 (890)
Q Consensus 830 ~~g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 884 (890)
..| ++++|...|+++++ +.|+...+..-+.. ..+|.+++.+..+.|+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~------~~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM------TAKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH------HHTHHHHHHHHHHSSS
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHH------HHHHHHHHHHHHHHHC
T ss_conf 7010113578898867876312110002--59888999999999------9997978999998735
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=7e-06 Score=47.46 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999914998999999999887
Q 002701 785 TYNILIHGFCTMGKFEEATKLLGGMMD 811 (890)
Q Consensus 785 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 811 (890)
++..++.+|.+.|++++|++.++++++
T Consensus 74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 74 YVFYLAVGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999997316999999999997
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1.1e-05 Score=46.29 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=5.3
Q ss_pred HHHCCCHHHHHHHHHHH
Q ss_conf 99539933799999998
Q 002701 164 YVQNKRVADGVFVFRLM 180 (890)
Q Consensus 164 ~~~~~~~~~A~~~~~~~ 180 (890)
|+..|++++|+..|.++
T Consensus 14 ~~~~~~y~~Ai~~y~~a 30 (128)
T d1elra_ 14 AYKKKDFDTALKHYDKA 30 (128)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
T ss_conf 99859999999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.11 E-value=1.3e-05 Score=45.86 Aligned_cols=26 Identities=8% Similarity=-0.111 Sum_probs=8.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999529998889999999999
Q 002701 768 AVQLHNAMLDGLLANTVTYNILIHGF 793 (890)
Q Consensus 768 A~~~~~~~~~~~~~~~~~~~~l~~~~ 793 (890)
|+..|+++++..|.+..+|..++.+|
T Consensus 60 Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 60 AITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999998873012058776689999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.05 E-value=2.8e-05 Score=43.84 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=9.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999996199989999999998
Q 002701 822 STIIYQYCKRGYLHEALKLWDSML 845 (890)
Q Consensus 822 ~~l~~~~~~~g~~~~A~~~~~~~~ 845 (890)
..++.+|...|++++|+..|++++
T Consensus 104 ~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 104 YSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 526999998888888899999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=0.00031 Score=37.63 Aligned_cols=304 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99997789997787699999997704994789999999998599989988999999999249978899999986669988
Q 002701 282 KNGFVKRGVKADVVTYCTLVLGLCKVQEFEFGVWLMNEMIELGLVPSEAAVSSLVEGFRRKGKIDDAFNLVNKLGPLGVV 361 (890)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 361 (890)
+.++.+.=..|+..-...++..|.+.|.++.|..++..+. -+..++..+.+.+++..|.+++.+.
T Consensus 2 ~~~~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------ 66 (336)
T d1b89a_ 2 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------ 66 (336)
T ss_dssp HHHHTTTTTCC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCC---------CHHHHHHHHHHHCCHHHHHHHHHHC------
T ss_conf 4569998758985789999999987877999999998678---------9999999997031599999999880------
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 68998999999999059963899999999878999687779999999995499889999999998869998832099999
Q 002701 362 PNLFVYNALINSLCKERKFNEAEFLFNEMKQKGLSPNVVTYSILIDSLCRRGEMDIAVSFLGKMADEGIKATIYPYNSLI 441 (890)
Q Consensus 362 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 441 (890)
.+..+|..+...+.+.....-+ .+.......+......++..|-..|.+++...+++........ +...++.++
T Consensus 67 ~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~-~~~~~~~L~ 140 (336)
T d1b89a_ 67 NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELA 140 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-CHHHHHHHH
T ss_conf 8899999999999727287899-----9999875357887899999998769859999999999757744-467999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99995299238999999999769997885799999998716998899999999964998989888999999999359999
Q 002701 442 SGHCKLGNLSAAESFFEEMIHKGLTPTVITYTSLISGYCNEVKLNKAFRLYHEMTGKGIAPNSYTFTALISGLCRANKLT 521 (890)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 521 (890)
..|++.+ .+.-.+.+.... +......++..|-..+-++++.-++..+... -.++........+..
T Consensus 141 ~lyak~~-~~kl~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~--------~~A~~~~i~~~~~~~ 205 (336)
T d1b89a_ 141 ILYSKFK-PQKMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEY--------DNAIITMMNHPTDAW 205 (336)
T ss_dssp HHHHTTC-HHHHHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH--------HHHHHHHHHSTTTTC
T ss_pred HHHHHHC-HHHHHHHHHHCC------CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCH--------HHHHHHHHHCCHHHH
T ss_conf 9999869-499999998602------3599999999988748749999999855879--------999999997654456
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999999987799989689999999999729967999999999439999999999999999980799579999999997
Q 002701 522 EAIKWFDEMLERNVMPNEVTYNVLIEGYCREGCMVKAFELLDEMAGKGLVADTYTYRSLITGLCSAGRVSEAKEFVDGLH 601 (890)
Q Consensus 522 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 601 (890)
++....+-..+.. |...+...+..|.... ++-...++..+...-.+ ..++..+.+.+++.....+++...
T Consensus 206 ~~~~f~e~~~k~~---N~e~~~~~i~~yL~~~-p~~i~~lL~~v~~~~d~------~r~V~~~~k~~~l~li~p~Le~v~ 275 (336)
T d1b89a_ 206 KEGQFKDIITKVA---NVELYYRAIQFYLEFK-PLLLNDLLMVLSPRLDH------TRAVNYFSKVKQLPLVKPYLRSVQ 275 (336)
T ss_dssp CHHHHHHHHHHCS---STHHHHHHHHHHHHHC-GGGHHHHHHHHGGGCCH------HHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHCCC---CHHHHHHHHHHHHHCC-HHHHHHHHHHHCCCCCH------HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 6999999997247---8699999999999759-99999999985657998------999999985388077999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 759987888899999999945994899999999
Q 002701 602 REHCKLNEMCYSALLHGYCKEGRLKDALGACRE 634 (890)
Q Consensus 602 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 634 (890)
..+ +....+++...|...++++.-....+.
T Consensus 276 ~~n---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 276 NHN---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp TTC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HCC---HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 818---099999999998671246789999987
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00035 Score=37.27 Aligned_cols=71 Identities=18% Similarity=0.115 Sum_probs=32.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q ss_conf 999999999149989999999998879-----98877-7889999999996199989999999998599999-9988999
Q 002701 786 YNILIHGFCTMGKFEEATKLLGGMMDN-----GILPD-CITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKP-DPLAYNF 858 (890)
Q Consensus 786 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ 858 (890)
+..++..+.+.|++++|+..++++++. ...++ ..++..++.++.+.|++++|+..++++++ +.| +..++..
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~~~a~~N 85 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHH
T ss_conf 9999999999779999999999999988653014764789999872688865773988878877988--69297999999
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.38 E-value=0.038 Score=25.11 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 88899999999999149---9899999999988799887-77-8899999999961999899999999985999999
Q 002701 781 ANTVTYNILIHGFCTMG---KFEEATKLLGGMMDNGILP-DC-ITYSTIIYQYCKRGYLHEALKLWDSMLNKGLKPD 852 (890)
Q Consensus 781 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 852 (890)
++..+-...++++.+.. +.++++.+++++... .| +. ..+..|+-+|.+.|++++|..+++++++ +.|+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~ 105 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 105 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCC
T ss_conf 88101999999998279688999999999999854--9505999999999999987329999999999982--3998
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.04 E-value=0.048 Score=24.50 Aligned_cols=110 Identities=10% Similarity=0.006 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH----CCCHHHHH
Q ss_conf 9669999999998789998888799999999935999899999999952-999888999999999991----49989999
Q 002701 729 YMDKAELLCKEMLASGSLPNQITYGCFLDYLTREGKMEKAVQLHNAMLD-GLLANTVTYNILIHGFCT----MGKFEEAT 803 (890)
Q Consensus 729 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~----~g~~~~A~ 803 (890)
++++|+..|++..+.+.......+ +.....+.++|+..+.+..+ + ++.....|+..|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~~a~~~l-----~~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMFGCLSL-----VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHH-----HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHH-----CCCCCCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 999999999999987991545654-----1011238999999876541133---12555567875330135310357888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCC
Q ss_conf 999998879988777889999999996----1999899999999985999
Q 002701 804 KLLGGMMDNGILPDCITYSTIIYQYCK----RGYLHEALKLWDSMLNKGL 849 (890)
Q Consensus 804 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 849 (890)
+++++..+.+ +......|+..|.. ..+.++|..+++++.+.|.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCC---CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8875000257---4067789999998298467789999999999998788
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| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=0.1 Score=22.50 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=6.5
Q ss_pred HHHCCCHHHHHHHHHHHH
Q ss_conf 996199989999999998
Q 002701 828 YCKRGYLHEALKLWDSML 845 (890)
Q Consensus 828 ~~~~g~~~~A~~~~~~~~ 845 (890)
+...|....|...+..+.
T Consensus 391 L~~~g~~~~A~~e~~~l~ 408 (450)
T d1qsaa1 391 LMYWNLDNTARSEWANLV 408 (450)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHH
T ss_conf 998699469999999998
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