Citrus Sinensis ID: 002742


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-----
MYREAREISIRNATKANAGGQTLKYMDSPRPLQQPKSFKSRDSSQIESFRVLAKLREAPWSPNERKDRFAAKDAPRFSYDGRESRESIKSTIKLKELPRLSLDSKVHSMRGSTTEMKSNYLLGDMQRVNGNSSILNQQQEPGSNKRPSSLIAKLMGLEAFPDSTSTNRNQPNQNESLPDVQFDVISGLSKTTLKNKQNQTSGSPRNSIKEPVSPRIKNANSVKKPTSSSKFPIEPAPWKQQEGSKGQTPASLSQETPTRASNSFLSVYGEIEKRLAQLEFKKSGKDLRTLKQILEAMQKTKEILESREEDQASSFASQTGDNNRVDPSSILANSDNLKRGNPTSTKTKRICSPKGFRSPIVVMKAAKSIEKNSNPASSAIQNESLSGYQCRAGRKESVEKRTKDPTQRSNYLQDPSSRPIHLTNKDTRAKSLRLGQTSKSSHPTTGKTNSRKCSESLNPRLEHKELKLENQSHSRTPSSDLSRSRRQHMESGPPQRQSRSKSQHLGQSDDQLSDISVNVRYLTHQGDASSLQSGSYISMGSYVGSEVSSTDRSDKISGAFFLQHGPTYPAAGYIGDKSTAEPGIAGPEQPSPVSVLEATFYRDEPPSPVRKISHAFTDDEAEWSPVDLNHIANCRKARFGSANDYNKLQNMKHLDQNDMHINPTHEKSITDEIAPNFESTDPNHRYISEILLASGFLRDFEADFMNIKLNPSGHLINPNLFFILEQTKACIRLPNDLHKGKKITNAEPNTKKAQRKLVFDAVNEILVHKLVLQESSKKWFSPSKLARGRSSGEQLLRDLCSEVDCLQANNSNCNLDGDDDSMTSIIWKDLKHGSTDWTNCSSEITWLVLDVERLIFKDLISEIVRDETGSLQGHPGRHCRQLFSK
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
cccccccEEEEEcccHcccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHcccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccccHHHHHHHHHHHcHHHHccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHccccccHHHHHHHHHHHHHHHHHHcHHcccccccccHHHHHHHHHHcccccccccccHcccHEHHHHHHHHHHHHHHHHHHHHHHHcccccccccEcccc
MYREAREISIRNatkanaggqtlkymdsprplqqpksfksrdssQIESFRVLAKLreapwspnerkdrfaakdaprfsydgresresIKSTiklkelprlsldskvhsmrgsttemKSNYLLGDmqrvngnssilnqqqepgsnkrpsSLIAKLMgleafpdststnrnqpnqneslpdvqFDVISGLSKttlknkqnqtsgsprnsikepvspriknansvkkptssskfpiepapwkqqegskgqtpaslsqetptrasNSFLSVYGEIEKRLAQLEFKKSGKDLRTLKQILEAMQKTKEILESReedqassfasqtgdnnrvdpssilansdnlkrgnptstktkricspkgfrspIVVMKAAKSieknsnpassaiqneslsgyqcragrkesvekrtkdptqrsnylqdpssrpihltnkdtrakslrlgqtsksshpttgktnsrkcseslnprlehkelklenqshsrtpssdlsrsrrqhmesgppqrqsrsksqhlgqsddqlsdISVNVRYLthqgdasslqsgsyismgsyvgsevsstdrsdkisgafflqhgptypaagyigdkstaepgiagpeqpspvsvleatfyrdeppspvrkishaftddeaewspvdlnHIANCRkarfgsandynklqnmkhldqndmhinptheksitdeiapnfestdpnhRYISEILLASGFLRDFEADFmniklnpsghlinpnlFFILEQTKACirlpndlhkgkkitnaepntkKAQRKLVFDAVNEILVHKLVLQesskkwfspsklargrssGEQLLRDLCSEVdclqannsncnldgdddsmTSIIWKDLkhgstdwtncssEITWLVLDVERLIFKDLISEIVRdetgslqghpgrhcrqlfsk
myreareisirnatkanaggqtlkymdsprplqqpksfksrdssqIESFRVLAklreapwspnerkdrfaakdaprfsydgresresikstiklkelprlsldskvhsmrgstteMKSNYLLGDMQRVNGNSSIlnqqqepgsnKRPSSLIAKLMGLEAFPDSTSTNRNQPNQNESLPDVQFDVISGLSKttlknkqnqtsgsprnsikepvspriknansvkkptssskfpiepapwkqqegskgqtpaslsqetptrasNSFLSVYGEIEKRLAQLefkksgkdlrTLKQILEAMQKTKEILESREEDQAssfasqtgdnnrvdpssilansdnlkrgnptstktkricspkgfrsPIVVMKAAKsieknsnpassaiqneslsgyqcRAGRKesvekrtkdptqrsnylqdpssrpihltnkdtrakslrlgqtsksshpttgktnsrkcseslnprlehkelklenqshsrtpssdlsrsrRQHMEsgppqrqsrsksqhlgqSDDQLSDISVNVRYLTHQGDASSLQSGSYISMGSYVGSEVSSTDRSDKISGAFFLQHGPTYPAAGYIGDKSTAEPGIAGPEQPSPVSVLEATFYRDEPPSPVRKISHAFTDDEAEWSPVDLNHIANCRKARFGSANDYNKLQNMKHLDQNDMHINPTHEKSITDEIAPNFESTDPNHRYISEILLASGFLRDFEADFMNIKLNPSGHLINPNLFFILEQTKACIRLPNDlhkgkkitnaepntkkaQRKLVFDAVNEILVHKLvlqesskkwfspsklargrsSGEQLLRDLCSEVDCLQAnnsncnldgdddSMTSIIWKDLKhgstdwtncSSEITWLVLDVERLIFKDLISEIVRdetgslqghpgrhcrqlfsk
MYREAREISIRNATKANAGGQTLKYMDSPRPLQQPKSFKSRDSSQIESFRVLAKLREAPWSPNERKDRFAAKDAPRFSYDGRESRESIKSTIKLKELPRLSLDSKVHSMRGSTTEMKSNYLLGDMQRVNGNSSILNQQQEPGSNKRPSSLIAKLMGLEAFPDSTSTNRNQPNQNESLPDVQFDVISGLSKTTLKNKQNQTSGSPRNSIKEPVSPRIKNANSVKKPTSSSKFPIEPAPWKQQEGSKGQTPASLSQETPTRASNSFLSVYGEIEKRLAQLEFKKSGKDLRTLKQILEAMQKTKEILESREEDQASSFASQTGDNNRVDPSSILANSDNLKRGNPTSTKTKRICSPKGFRSPIVVMKAAKSIEKNSNPASSAIQNESLSGYQCRAGRKESVEKRTKDPTQRSNYLQDPSSRPIHLTNKDTRAKSLRLGQTSKSSHPTTGKTNSRKCSESLNPRLEHKELKLENQSHSRTPSSDLSRSRRQHMESGPPQRQSRSKSQHLGQSDDQLSDISVNVRYLTHQGDASSLQSGSYISMGSYVGSEVSSTDRSDKISGAFFLQHGPTYPAAGYIGDKSTAEPGIAGPEQPSPVSVLEATFYRDEPPSPVRKISHAFTDDEAEWSPVDLNHIANCRKARFGSANDYNKLQNMKHLDQNDMHINPTHEKSITDEIAPNFESTDPNHRYISEILLASGFLRDFEADFMNIKLNPSGHLINPNLFFILEQTKACIRLPNDLHKGKKITNAEPNTKKAQRKLVFDAVNEILVHKLVLQESSKKWFSPSKLARGRSSGEQLLRDLCSEVDCLQANNSNCNLDGDDDSMTSIIWKDLKHGSTDWTNCSSEITWLVLDVERLIFKDLISEIVRDETGSLQGHPGRHCRQLFSK
************************************************************************************************************************************************************************************************************************************************************************LSVYGEIEKRLAQL***********************************************************************************************************************************************************************************************************************************************NVRYL**********************************SGAFFLQHGPTYPAAGYI**********************************************AEWSPVDLNHIANCRKARFGSA*****************************************HRYISEILLASGFLRDFEADFMNIKLNPSGHLINPNLFFILEQTKACIRLPNDLHK***************RKLVFDAVNEILVHKLVLQES**KW***************LLRDLCSEVDCLQANNSNCNLDGDDDSMTSIIWKDLKHGSTDWTNCSSEITWLVLDVERLIFKDLISEIVRD*******************
****AREIS***********************************************************************************************************************************************KLMGLEA************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NFESTDPNHRYISEILLASGFLRDFEADFMNIKLNPSGHLINPNLFFILEQTKACIRLPN***************KKAQRKLVFDAVNEILVHKLVLQESSKKW***************LLRDLCSEVDCLQANNS*****GDDDSMTSIIWKDLKHGSTDWTNCSSEITWLVLDVERLIFKDLISEIVRDETGSLQ**PGRHCRQLF**
********SIRNATKANAGGQTLKYMDSPR****************ESFRVLAKLREAPWSPNERKDRFAAKDAPRFS*********IKSTIKLKELPRLSLDSKVHSMRGSTTEMKSNYLLGDMQRVNGNSSILN***********SSLIAKLMGLEAFPDSTSTNRNQPNQNESLPDVQFDVISGLSKTTL*******************SPRIK**************PIEPA**********************RASNSFLSVYGEIEKRLAQLEFKKSGKDLRTLKQILEAMQKTKEIL******************NRVDPSSILANSDNLKRGNPTSTKTKRICSPKGFRSPIVVMKAAKS************QNESL****************************DPSSRPIHLTNKDTRAKSLR**********************SLNPRLEHKELKL*****************************************DQLSDISVNVRYLTHQGDASSLQSGSYISMGSY**********SDKISGAFFLQHGPTYPAAGYIGDKSTAEPGIAGPEQPSPVSVLEATFYRDEPPSPVRKISHAFTDDEAEWSPVDLNHIANCRKARFGSANDYNKLQNMKHLDQNDMHINPTHEKSITDEIAPNFESTDPNHRYISEILLASGFLRDFEADFMNIKLNPSGHLINPNLFFILEQTKACIRLPNDLHKGKKITNAEPNTKKAQRKLVFDAVNEILVHKLVLQESSKKWFSPSKLARGRSSGEQLLRDLCSEVDCLQANNSNCNLDGDDDSMTSIIWKDLKHGSTDWTNCSSEITWLVLDVERLIFKDLISEIVRDETG****************
*****REISIRNATK****************************SQIESFRVLAKLR**************************************************************************************************************************************************************************************************************SFLSVYGEIEKRLAQLEFKKSGKDLRTLKQILEAMQKTK*******************************************************RSPIVV*KAAKSI*************************************************************************************************************************************************************************************D**************************************PSPVSVLEATFYRDEPPS*******************************FGSANDYNKLQNMKHLDQNDMHINPTHEKSITDEIAPNFESTDPNHRYISEILLASGFLRDFEADFMNIKLNPSGHLINPNLFFILEQTKA******************PNTKKAQRKLVFDAVNEILVHKLVLQESSKKWFSPSKL**GRSSGEQLLRDLCSEVDCLQANNSNCNLDGDDDSMTSIIWKDLKHGSTDWTNCSSEITWLVLDVERLIFKDLISEIVRDETGSLQ*************
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MYREAREISIRNATKANAGGQTLKYMDSPRPLQQPKSFKSRDSSQIESFRVLAKLREAPWSPNERKDRFAAKDAPRFSYDGRESRESIKSTIKLKELPRLSLDSKVHSMRGSTTEMKSNYLLGDMQRVNGNSSILNQQQEPGSNKRPSSLIAKLMGLEAFPDSTSTNRNQPNQNESLPDVQFDVISGLSKTTLKNKQNQTSGSPRNSIKEPVSPRIKNANSVKKPTSSSKFPIEPAPWKQQEGSKGQTPASLSQETPTRASNSFLSVYGEIEKRLAQLEFKKSGKDxxxxxxxxxxxxxxxxxxxxxxxxQASSFASQTGDNNRVDPSSILANSDNLKRGNPTSTKTKRICSPKGFRSPIVVMKAAKSIEKNSNPASSAIQNESLSGYQCRAGRKESVEKRTKDPTQRSNYLQDPSSRPIHLTNKDTRAKSLRLGQTSKSSHPTTGKTNSRKCSESLNPRLEHKELKLENQSHSRTPSSDLSRSRRQHMESGPPQRQSRSKSQHLGQSDDQLSDISVNVRYLTHQGDASSLQSGSYISMGSYVGSEVSSTDRSDKISGAFFLQHGPTYPAAGYIGDKSTAEPGIAGPEQPSPVSVLEATFYRDEPPSPVRKISHAFTDDEAEWSPVDLNHIANCRKARFGSANDYNKLQNMKHLDQNDMHINPTHEKSITDEIAPNFESTDPNHRYISEILLASGFLRDFEADFMNIKLNPSGHLINPNLFFILEQTKACIRLPNDLHKGKKITNAEPNTKKAQRKLVFDAVNEILVHKLVLQESSKKWFSPSKLARGRSSGEQLLRDLCSEVDCLQANNSNCNLDGDDDSMTSIIWKDLKHGSTDWTNCSSEITWLVLDVERLIFKDLISEIVRDETGSLQGHPGRHCRQLFSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query885 2.2.26 [Sep-21-2011]
Q9LF24927 Protein LONGIFOLIA 1 OS=A no no 0.781 0.746 0.349 2e-94
Q9S823905 Protein LONGIFOLIA 2 OS=A no no 0.757 0.740 0.346 2e-89
>sp|Q9LF24|LNG1_ARATH Protein LONGIFOLIA 1 OS=Arabidopsis thaliana GN=LNG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  347 bits (891), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 302/865 (34%), Positives = 442/865 (51%), Gaps = 173/865 (20%)

Query: 60  WSPNERKDRFAAKDAPRFSYDGRESRESIKSTIKLKELPRLSLDSKVHSMRGSTTEMKSN 119
           WS   R  +   KD+PRFSYD RE+R   K+  KLKE PRLSLDS+ +S R + +     
Sbjct: 193 WSEGRRVVKL--KDSPRFSYDERETR---KTGAKLKETPRLSLDSRSNSFRSARS----- 242

Query: 120 YLLGDMQRVNGNSSILNQQQEPGSNKRPSSLIAKLMGLEAFPDSTSTNRNQPNQNESLPD 179
                      + S   Q+   G  +  SS++AKLMGLE  PD                 
Sbjct: 243 -----------SCSPEPQELVTGHRRTTSSVVAKLMGLEVIPDEP--------------- 276

Query: 180 VQFDVISGLSKTTLKNKQNQTSGSPRNSIKEPVS-PRIKNANSVKKPTSSSKFPIEPAPW 238
                       T++N++N+   SPR + +  V   R +  +S+KK    +KFP++ +PW
Sbjct: 277 -----------VTIQNRENRFCDSPRPTSRVEVDLQRSRGFDSIKK-MMPAKFPMKASPW 324

Query: 239 KQQEGSKGQTPASLSQETPTRASNSFLSVYGEIEKRLAQLEFKKSGKDLRTLKQILEAMQ 298
            Q +G+K Q       + P   +   L+VYGEI+KRL+QLEFKKS KDLR LKQILEAM+
Sbjct: 325 AQVDGAKNQV------KIPDATT---LTVYGEIQKRLSQLEFKKSEKDLRALKQILEAME 375

Query: 299 KTKEILESREEDQASSFASQ-TGDNNRVDPSSILANSDNLKRGNPTSTKTKRICSPKGFR 357
           KT++++   ++D  +  +S     NN+  PS+I  +S N K                   
Sbjct: 376 KTQQLISKDDDDNKTLCSSNFMQRNNQPIPSAINTSSMNFK------------------S 417

Query: 358 SPIVVMKAAKS-IEKNSNPASSA-----------IQNESLSGYQCRAGRKESVEKRTKDP 405
           S IVVMKAA + + K++  A SA           ++  +L   Q    RK+S      D 
Sbjct: 418 SSIVVMKAATAPVFKDTGIAGSASFSPRNVALPNVKVGNLRQAQKVIPRKQSA----MDV 473

Query: 406 TQRSNYLQDPSSRPIHLTNKDTRAKSLRLGQTSKSSHPTTGKTNSRKCSESLNPRLEHKE 465
           T R  Y +  +      T K+T  + L+    SKS    +GK   +K S SL  R   K+
Sbjct: 474 TPRPGYYKGQTES----TMKNTSTRPLQ----SKSDMAKSGKI--QKPSVSL--RTPPKK 521

Query: 466 LKLENQSHSRTPSSDLSRSRRQHM-----ESGPPQRQSRSKSQHLGQSDDQLSDISVNVR 520
           L  E QS   +P  +L++++RQ +     ES  P+R+   KS+ L QS+D+LSD S ++R
Sbjct: 522 LGFEKQSRPTSPKPELNKNQRQQLSRQQTESASPRRKPGIKSRGLQQSEDRLSDESSDLR 581

Query: 521 YLTHQGDASSLQSGSYISMGSYVGSEVSS---TDRSDKISGAFFLQHGPTYPAAGYIGDK 577
                    SL+S S +S+ S + +EV+S    +R+  I+     QH P   +   +G +
Sbjct: 582 ---------SLRSDSNVSLASNLDTEVTSRYNYERNSDITE----QHTPKQRSPD-LGMR 627

Query: 578 STAEPGIAGPEQPSPVSVLEATFYRDEPPSPVRKISHAFTDD------EAEWSPVDLNHI 631
           S ++P     EQPSPVSVL+  F  D+ PSPVRKIS  F +D      E+ W    +N  
Sbjct: 628 SLSKPLKVTVEQPSPVSVLDVAFDEDDSPSPVRKISIVFKEDDNLSSEESHW----MNKN 683

Query: 632 AN-CRKARFGSANDYNKLQNMKHLDQNDMHINPTHEKSITDEIAPNFESTDPNHRYISEI 690
            N CR   +  +N          L Q D  +    E  + D+     E  + +H+YISEI
Sbjct: 684 NNLCRSIVWPESN--------TSLKQPDAELT---EGFMEDDA----EFKNGDHKYISEI 728

Query: 691 LLASGFLRDFEADFMNIKLNPSGHLINPNLFFILEQTKAC-IRLPNDLHKGKKITNAEPN 749
           +LASG LRD +   ++I+L+ +   INP+LFF+LEQ K   + L ++ HKG+     +  
Sbjct: 729 MLASGLLRDIDYSMISIQLHQAHLPINPSLFFVLEQNKTSNVSLQDNKHKGRGFGQQQTV 788

Query: 750 --TKKAQRKLVFDAVNEILVHKLVLQESSKK-----WFSPSKLARGRSSGEQLLRDLCSE 802
              ++++RKL+FD +NEIL H+   +  +K+       S  +     S GE+LL+ LCSE
Sbjct: 789 NLVERSKRKLIFDTINEILAHRFAAEGCTKQPSITLSISTQRTHEKSSRGEELLQTLCSE 848

Query: 803 VDCLQANNSNCNLDGDDDSMTSIIWKDLKHGSTDWTNCSSEITWLVLDVERLIFKDLISE 862
           +D LQ +NS C LD DD+ +   IW+DL+    +W     E   LVLD+ERLIFKDLI E
Sbjct: 849 IDRLQ-DNSKCILDEDDEDL---IWEDLQSHGMNWKEIEGETPGLVLDIERLIFKDLIGE 904

Query: 863 IVRDETGS----LQGHPGRHCRQLF 883
           +V  E  +    L G P    RQLF
Sbjct: 905 VVTSEFAAFPRMLSGQP----RQLF 925




In association with LNG2, regulates leaf morphology by promoting longitudinal polar cell elongation independently of ROT3.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9S823|LNG2_ARATH Protein LONGIFOLIA 2 OS=Arabidopsis thaliana GN=LNG2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query885
224141525 1069 predicted protein [Populus trichocarpa] 0.989 0.819 0.497 0.0
255573414 1047 conserved hypothetical protein [Ricinus 0.983 0.830 0.480 0.0
225451725 1054 PREDICTED: uncharacterized protein LOC10 0.974 0.817 0.477 0.0
225456583 1099 PREDICTED: uncharacterized protein LOC10 0.980 0.789 0.431 1e-172
296082210913 unnamed protein product [Vitis vinifera] 0.807 0.783 0.446 1e-165
255547165 1094 conserved hypothetical protein [Ricinus 0.978 0.791 0.412 1e-156
224130024 1027 predicted protein [Populus trichocarpa] 0.952 0.820 0.412 1e-154
356507062 1247 PREDICTED: uncharacterized protein LOC10 0.978 0.694 0.392 1e-146
356519134 1092 PREDICTED: uncharacterized protein LOC10 0.972 0.788 0.390 1e-143
224118938 1038 predicted protein [Populus trichocarpa] 0.945 0.806 0.411 1e-143
>gi|224141525|ref|XP_002324120.1| predicted protein [Populus trichocarpa] gi|222867122|gb|EEF04253.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/916 (49%), Positives = 579/916 (63%), Gaps = 40/916 (4%)

Query: 3    REAREISIRNATKANAGGQTLKYMDSPRPLQQPKSFKSRDSSQIESFRVLAKLREAPWSP 62
            RE R +S++ AT   A GQTLKY+DSPRPL    S   +D    ESFRVL KLRE+P+  
Sbjct: 161  REPRGLSVKTATTGEARGQTLKYIDSPRPLHYLNSVNPKDPGPRESFRVLHKLRESPYKS 220

Query: 63   NERKDRF---AAKDAPRFSYDGRESRESIKSTIKLKELPRLSLDSKVHSMRGSTTEMKSN 119
            +E K  F     KDA RFSYDG ESR+++KSTIKLKELPRLSLDS+  S+RGS  EMKSN
Sbjct: 221  SEGKSNFLTGGLKDARRFSYDGWESRDTLKSTIKLKELPRLSLDSRAGSVRGSNPEMKSN 280

Query: 120  YLLGDMQRVNGNS-SILNQQQEPGSNKRPSSLIAKLMGLEAFPDSTSTNRNQPNQNESLP 178
            +L  D+ R + NS S LN QQ+PGSNKRPSS++AKLMGLEA PD  ST+ NQ  Q ++  
Sbjct: 281  FLSRDLGRDDLNSNSFLNNQQDPGSNKRPSSVVAKLMGLEALPDPMSTSGNQTTQIKTHL 340

Query: 179  DVQFDVISGLSKTTLKNKQNQTSGSPRNSIKEPVSPRIKNANSVKKPTSSSKFPIEPAPW 238
            D +   + G S+TT  +KQN+ SGSPRN  KEP SP  +NA S KK T+S KFPIEPAPW
Sbjct: 341  DEENKFL-GSSRTTDLDKQNRISGSPRNLHKEPTSPSQRNAASDKKLTASLKFPIEPAPW 399

Query: 239  KQQEGSKG-QTPASLSQETPTRASNSFLSVYGEIEKRLAQLEFKKSGKDLRTLKQILEAM 297
            +Q +GS+G Q PA  ++ T T+  +S LSVYGEIEKRLAQLEF+KSGKDLR LKQILEAM
Sbjct: 400  RQPDGSRGSQAPAQKNRVTLTKVPSSSLSVYGEIEKRLAQLEFQKSGKDLRALKQILEAM 459

Query: 298  QKTKEILESREEDQASSFASQTGDNNRVDPSSILANSDNLKRGNPTSTKTKRICSPKGFR 357
            QKTKEILE+R+ED  SSF ++    + +D  S LAN  +L+  +P S  TK   SPK F+
Sbjct: 460  QKTKEILETRKED--SSFETRRSIISSLDQGSKLANLRDLQSNSPISVSTKGTTSPKSFK 517

Query: 358  SPIVVMKAAKSIEKNSNPASSAIQNESLSG-YQCRA-----GRKESVEKRT-KDPTQRSN 410
            S IV+MK AK I K  N  S+    +S SG ++ R      GRKESV+K+  KD + R  
Sbjct: 518  SSIVIMKPAKLIGKTINSVSAINATDSSSGIHRLRVATPEDGRKESVDKQAAKDVSPRIK 577

Query: 411  YLQDPSSRPIHL--TNKDTRAKSLRLGQTSKSSHPTTGK-TNSRKCSESLNPRLEHKELK 467
             L D S++P+H    +K+  ++S+RL Q SK    TT + TNS K SE++N R + K+L 
Sbjct: 578  NLTDHSNKPLHRNPMDKNAGSRSIRLAQPSKEIRSTTREATNSGKRSETMNLRQQQKKLG 637

Query: 468  LENQSHSRTPSSDLSRSRRQH----MESGPPQRQSRSKSQHLGQSDDQLSDISVNVRYLT 523
             E QS   T S + +R RRQ      +S  P ++ R+KS  L  SD +LSDIS ++R  +
Sbjct: 638  FEKQSRPATASLESNRRRRQPSKQPTDSCSPHQKPRAKSLDLQPSDYELSDIS-DLRDSS 696

Query: 524  HQGDASSLQSGSYISMGSYVGSEVSSTDRSDKISGAFFLQHGPTYPAAGYIGD------- 576
            H  DA SLQS S I + S    EVSS DRS+KI+  F  Q          I +       
Sbjct: 697  HHSDAVSLQSESNIGLASQYDDEVSSNDRSNKINKTFIQQAHLRQRLRCLIQNLVERSIK 756

Query: 577  -KSTAEPGIAGPEQPSPVSVLEATFYRDEPPSPVRKISHAFTDDEA------EWSPVDLN 629
              S  EP  A  EQPSPVSVL+A FY DE PSP++KIS AF DDEA      EW P+D +
Sbjct: 757  GTSIPEPRPASSEQPSPVSVLDAAFYGDELPSPIKKISIAFKDDEALKSDGVEWIPIDED 816

Query: 630  HIANCRKARFGSANDYNKLQNMKHLDQNDMHINPTHEKSITDEIAPNFESTDPNHRYISE 689
            +  N   +   S  +   +QN+K L QN   +  TH++ ITDE  P +   +P+H YIS+
Sbjct: 817  YSFNSMNSGLHSMINQKNVQNLKPLIQNLKEMLSTHKEYITDETTPFYNHANPDHEYISQ 876

Query: 690  ILLASGFLRDFEADFMNIKLNPSGHLINPNLFFILEQTKACIRLPNDLHKGKKITNAEPN 749
            I LASG  +DFE+    I L+P+G  INP++F  LEQ KA     ND H GK+I+ +E +
Sbjct: 877  IYLASGLHKDFESGLRTINLHPTGTPINPDIFHALEQAKASSGHFNDDHNGKRISLSETH 936

Query: 750  TKKAQRKLVFDAVNEILVHKLVLQESSKKWFSPSKLARGRSSGEQLLRDLCSEVDCLQAN 809
              K QRKL+FD VNEILVHKL+ + SSK+  S   LA      +QLL DLCSE+D LQ  
Sbjct: 937  A-KIQRKLLFDVVNEILVHKLLSENSSKQRLSSKMLAGKGQKRQQLLGDLCSEIDRLQC- 994

Query: 810  NSNCNLDGDDDSMTSIIWKDLKHGSTDWTNCSSEITWLVLDVERLIFKDLISEIVRDETG 869
              +  LD +DD+  SI W+DL   S  WT C  EI  +VL VERLIFKDLI+E++  E  
Sbjct: 995  -LHYLLDDEDDNSRSIQWEDLMRESIHWTACHDEIQGIVLAVERLIFKDLITEVINSEMI 1053

Query: 870  SLQGHPGRHCRQLFSK 885
              QG    H RQLF K
Sbjct: 1054 GRQGRLAGHHRQLFPK 1069




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573414|ref|XP_002527633.1| conserved hypothetical protein [Ricinus communis] gi|223533007|gb|EEF34772.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225451725|ref|XP_002276947.1| PREDICTED: uncharacterized protein LOC100266999 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456583|ref|XP_002265665.1| PREDICTED: uncharacterized protein LOC100253543 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296082210|emb|CBI21215.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255547165|ref|XP_002514640.1| conserved hypothetical protein [Ricinus communis] gi|223546244|gb|EEF47746.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224130024|ref|XP_002328635.1| predicted protein [Populus trichocarpa] gi|222838811|gb|EEE77162.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356507062|ref|XP_003522290.1| PREDICTED: uncharacterized protein LOC100787391 [Glycine max] Back     alignment and taxonomy information
>gi|356519134|ref|XP_003528229.1| PREDICTED: uncharacterized protein LOC100805643 [Glycine max] Back     alignment and taxonomy information
>gi|224118938|ref|XP_002317944.1| predicted protein [Populus trichocarpa] gi|222858617|gb|EEE96164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query885
TAIR|locus:20373181025 TRM4 "AT1G74160" [Arabidopsis 0.949 0.819 0.374 4.9e-117
TAIR|locus:2076557905 LNG2 "LONGIFOLIA2" [Arabidopsi 0.361 0.353 0.402 6.2e-72
TAIR|locus:2180857927 LNG1 "LONGIFOLIA1" [Arabidopsi 0.467 0.446 0.352 1.2e-56
TAIR|locus:20274731014 TRM3 "AT1G18620" [Arabidopsis 0.667 0.582 0.304 4.3e-50
TAIR|locus:2087413540 TRM5 "AT3G63430" [Arabidopsis 0.111 0.183 0.303 1e-13
FB|FBgn0036203 1514 Muc68D "Mucin 68D" [Drosophila 0.667 0.390 0.209 8.6e-09
ZFIN|ZDB-GENE-091204-67 3919 si:dkey-33i22.3 "si:dkey-33i22 0.585 0.132 0.218 2.9e-07
WB|WBGene00006820 8081 unc-89 [Caenorhabditis elegans 0.512 0.056 0.199 1e-06
TAIR|locus:2174103703 TRM25 "AT5G62170" [Arabidopsis 0.247 0.311 0.218 2.6e-06
POMBASE|SPBC1711.05451 SPBC1711.05 "nucleocytoplasmic 0.342 0.671 0.221 2.8e-06
TAIR|locus:2037318 TRM4 "AT1G74160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
 Identities = 342/914 (37%), Positives = 494/914 (54%)

Query:     1 MYREAREISIRNA-TKANAGGQTLKYMDSPRPLQQPKSFKSRDSSQIESFRVLAKLREAP 59
             MYREAR +  +   T+     Q+ +  DSPRP    +S    D +  ESFRVLA+LRE  
Sbjct:   154 MYREARGLLSKTPMTREEVVRQSRRE-DSPRPYGLKQS-TPMDLN--ESFRVLARLRETS 209

Query:    60 WSPNERKDRFAAKDAPRFSYDGRESRESIKSTIKLKELPRLSLDSKVHSMRGSTTEMKSN 119
                NE       KDAPR+S D   S +++KS  KLKELPRLSLDS+  + R S+ + KS+
Sbjct:   210 QHYNE----LGMKDAPRYSVD---SHDTLKSRQKLKELPRLSLDSRERATRNSSVDPKSS 262

Query:   120 YLLGDMQRVNGNSSILNQQQEPGSNKRPSSLIAKLMGLEAFPDST-STNRNQPNQNES-L 177
              L          S   ++     S KRP S++AKLMGLE  P S    + +Q   N++ +
Sbjct:   263 KL----------SESFSESCSSSSKKRPPSVVAKLMGLETLPGSPLGRDIHQFGLNKTNI 312

Query:   178 PDVQFDVIS-GLSKTTLKNKQNQTSGSPRNSIKEPVSPRIKNANSVKKPTSSSKFPIEPA 236
              D   D  S  L +  L      +  SPR+  K+P SPR +N++ V KP S+++FP+EPA
Sbjct:   313 SDQNDDPFSRSLREKNLNRAIRFSPSSPRSLGKDPASPRWRNSDFVMKPLSNTRFPVEPA 372

Query:   237 PWKQQEGSKG-QTPASLSQET-PTRASNSFLSVYGEIEKRLAQLEFKKSGKDLRTLKQIL 294
             PWK  + ++  Q  AS+  +  P  A N   +VY E+E+RL  LEFK SGKDLR LKQIL
Sbjct:   373 PWKHADRNRVLQKQASMPVKAKPYEAPNFPPTVYSEMERRLNDLEFKHSGKDLRALKQIL 432

Query:   295 EAMQKTKEILESREEDQASSFASQTGDNNRVDPSSILANSDNLKRGNPTSTKTKRICSPK 354
             E+MQ +K  L++ ++ Q+++FA Q  D  R        NS        + T+ +   S +
Sbjct:   433 ESMQ-SKGFLDTEKQQQSTNFAVQR-DYER-------ENSATSNHAMSSRTRVQSSSSNQ 483

Query:   355 GFRSPIVVMKAAKSIEKNSNPASSAIQNESLSGYQCRAGRKESVEKRTK-DPTQRSNYLQ 413
              ++SPIV+MK AK +EK   PASS I   SL+G + +  R++  +K T    ++R     
Sbjct:   484 VYQSPIVIMKPAKLVEKAGIPASSLIPIHSLTGIK-KIRREKPDDKGTSASNSKRVTKDC 542

Query:   414 DPSSRPIHLTNKDTRAKSLRLGQTSKSSHPT-TGKTNSRKCSESLNPRLEHKELKLENQS 472
              P +R           KS      S S  P    K ++ K S S++PRL+ K+L+ + +S
Sbjct:   543 SPGNRRAESCTSSFDKKSDSRNVRSSSKKPQQVSKESASKSSGSVSPRLQQKKLEYDKRS 602

Query:   473 HSRTPSSDLSRSRR----QHMESGPPQRQSRSKSQH-LGQSDDQLSDISVNVRYLTHQ-G 526
                TP  D S+SR+    Q +ES  P  + R K Q  L Q DDQLS  S   R  +H   
Sbjct:   603 RPPTPP-DSSKSRKPSNQQLVESTSPGGRRRPKGQKSLQQVDDQLSQASNESRTSSHGIC 661

Query:   527 DASSLQSGSYISMGSYV-GSEVSSTDRSDKISGAFFLQHGPTYPAAGYIGDKSTAEPGIA 585
               S  ++ + +   +   G +  S   + K   +  +Q+  + P   +  D  +A   + 
Sbjct:   662 TQSETEASACVEKSTEADGGKSPSVIEAAKAVVSNLMQNKSS-PR--FSEDGLSANLSLV 718

Query:   586 GPEQPSPVSVLEATFYRDEPPSPVR---KISHAFTDDEAE--WSPVDLNHIANCRKARFG 640
               E PSP+SVL+A+ YR+  PSPV+    ++H F D+  E  W+P    +  +   + F 
Sbjct:   719 ALEHPSPISVLDASTYRETEPSPVKTQGNVAHDFGDENCEDQWNPA---YSFSETTSSFS 775

Query:   641 SANDYNKLQNMKHLDQNDMHINPTHEKSITDEIAPNFESTDP--NHRYISEILLASGFL- 697
                +  KLQN++HL Q    +N +H+++  D IA   E+ DP  +HRYISEILLASG L 
Sbjct:   776 PEINRKKLQNVEHLVQKLRRLNSSHDEASQDYIASLCENADPTTDHRYISEILLASGLLL 835

Query:   698 RDFEADFMNIKLNPSGHLINPNLFFILEQTKACIRLPNDLHKGK-KITNAEPNTKKAQRK 756
             RD  +     +L+PSGH INP LFF+LEQTK      + LHK + K+   E    K  RK
Sbjct:   836 RDLGSGLTTFQLHPSGHPINPELFFVLEQTKGS-STTHLLHKEESKVLKNE----KLNRK 890

Query:   757 LVFDAVNEILVHKLVLQESSKKWFSPS--KLARGRSSGEQLLRDLCSEVDCLQAN----N 810
             LVFD VNEILV KL   E++      S  K+ +   S +QLL++LCS ++  Q      +
Sbjct:   891 LVFDLVNEILVEKLASVEATTNPLMKSYAKVTKKAVSAQQLLKELCSAIETQQKQATKRS 950

Query:   811 SNCNLDGDDDSMTSIIWKDLKHGSTDWTNCSSEITWLVLDVERLIFKDLISEIVRDETGS 870
              N  L+ +DD + SI+ +D+   S +W + S E++ LVLDVERL+FKDL++EIV  ET  
Sbjct:   951 ENFLLEEEDDFLKSILAEDVTIRSGNWADFSGEMSGLVLDVERLVFKDLVNEIVHAETSR 1010

Query:   871 LQGHPGRHCRQLFS 884
             LQ   GR  R LF+
Sbjct:  1011 LQAKSGRR-RTLFA 1023




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009506 "plasmodesma" evidence=IDA
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2076557 LNG2 "LONGIFOLIA2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180857 LNG1 "LONGIFOLIA1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027473 TRM3 "AT1G18620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087413 TRM5 "AT3G63430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-091204-67 si:dkey-33i22.3 "si:dkey-33i22.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00006820 unc-89 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2174103 TRM25 "AT5G62170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC1711.05 SPBC1711.05 "nucleocytoplasmic transport chaperone Srp40 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query885
pfam14309160 pfam14309, DUF4378, Domain of unknown function (DU 1e-38
>gnl|CDD|222668 pfam14309, DUF4378, Domain of unknown function (DUF4378) Back     alignment and domain information
 Score =  140 bits (356), Expect = 1e-38
 Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 23/180 (12%)

Query: 684 HRYISEILLASGFLRDFEADFMNIKLNPSGHLINPNLFFILEQTKACIRLPNDLHKGKKI 743
             YI +IL ASG LRD E+       + S   ++P+LF  LE   +              
Sbjct: 3   FSYIRDILSASGLLRDEESSLSR--WHSSDCPLDPSLFDELENKYSE------------- 47

Query: 744 TNAEPNTKKAQRKLVFDAVNEILVHKLVLQESSKKWFSPSKLA-RGRSSGEQLLRDLCSE 802
            +++    ++ RKL+FD VNEILV  L    S K W     L  R + SGEQLL ++  E
Sbjct: 48  -SSKDTESRSDRKLLFDCVNEILVEILEPYLSMKPWLKSVTLRIRPKPSGEQLLEEVWKE 106

Query: 803 VDCLQANNSNCNLDGDDDSMTSIIWKDLKHGSTDWTNCSSEITWLVLDVERLIFKDLISE 862
           +  L   +S C ++ + D   S++ KDL  G   W +   E+  + L++ER+I  DL+ E
Sbjct: 107 ISRLL--SSACEVEDELD---SLVDKDLSSGGG-WLDFREEVEEIGLEIERMILDDLVDE 160


Length = 160

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 885
PF14309162 DUF4378: Domain of unknown function (DUF4378) 100.0
PF1438334 VARLMGL: DUF761-associated sequence motif 97.77
>PF14309 DUF4378: Domain of unknown function (DUF4378) Back     alignment and domain information
Probab=100.00  E-value=1.3e-33  Score=277.27  Aligned_cols=161  Identities=32%  Similarity=0.502  Sum_probs=136.2

Q ss_pred             cchhHHHHHHHHcCCCccccccccccccCCCCCCCCchHHHHHhccccccCCCCCcccCcccccCCCCCCccchhhhhHH
Q 002742          682 PNHRYISEILLASGFLRDFEADFMNIKLNPSGHLINPNLFFILEQTKACIRLPNDLHKGKKITNAEPNTKKAQRKLVFDA  761 (885)
Q Consensus       682 ~d~~YI~dIL~ASGLl~Dl~s~~~~~~WhSs~~PIdPsLFe~LEq~k~~~~~~~d~c~~~~~~~~~~~~~rsdRKLLFD~  761 (885)
                      +||.||++||.||||+.+..  ..+..||++++||+|+||++||+.+...       ...     ...+.+++|||||||
T Consensus         1 ~e~~Yv~~iL~~sgl~~~~~--~~~~~~~s~~~pl~p~lf~~LE~~~~~~-------~~~-----~~~~~~~~rkLLFD~   66 (162)
T PF14309_consen    1 EEFSYVRDILEASGLLRDEP--SSLSRWHSSDCPLDPSLFEELEQKYSEK-------SEK-----KSRWSRSDRKLLFDC   66 (162)
T ss_pred             ChHHHHHHHHHHcCCCCCcc--ccccccCCCCCCcChHHHHHHHcccccc-------ccc-----cccccchhhhhHHHH
Confidence            48999999999999985432  3467999999999999999999977610       110     124889999999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCcccc-ccCCCchhhHHHHHHHHHHhhhccCCCCCCCCCchhHhHHHHHhhhcCCCCCCcc
Q 002742          762 VNEILVHKLVLQESSKKWFSPSKL-ARGRSSGEQLLRDLCSEVDCLQANNSNCNLDGDDDSMTSIIWKDLKHGSTDWTNC  840 (885)
Q Consensus       762 VNEiL~eil~~~~~~~PWlss~~~-~r~~psGq~LLeEVwseI~~l~~~~s~cslededdsLd~LV~kDL~~~~~~W~df  840 (885)
                      |||||.+++.++.+++||+++... .++.+.|+.|++|||++|..|+..  .|.   ..++++.||.+||.+ .++|++|
T Consensus        67 vNE~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~eV~~~v~~~~~~--~~~---~~~~~d~lv~~Dl~~-~~~w~~~  140 (162)
T PF14309_consen   67 VNEILSEILRPYLGCHPWLKSFSPRIRPKPSGEELLEEVWKEVSRWRSM--RCE---VEDELDSLVEKDLSR-EDGWWDF  140 (162)
T ss_pred             HHHHHHHHHhhcCCCCccccccccccccCCcHHHHHHHHHHHHHHHHhc--ccc---ccchHHHHHHHHHhC-CCCcCcH
Confidence            999999999999999999987653 567889999999999999999983  232   335689999999997 5667799


Q ss_pred             chhHHHHHHHHHHHHHHHHHHH
Q 002742          841 SSEITWLVLDVERLIFKDLISE  862 (885)
Q Consensus       841 ~~EveeIglEIErlIfdDLVdE  862 (885)
                      +.|+++||+|||++||++||+|
T Consensus       141 ~~E~~~i~~eIE~~Il~~Lv~E  162 (162)
T PF14309_consen  141 REEVEEIGLEIERMILDDLVEE  162 (162)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999987



>PF14383 VARLMGL: DUF761-associated sequence motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query885
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.5 bits (117), Expect = 5e-06
 Identities = 49/302 (16%), Positives = 87/302 (28%), Gaps = 102/302 (33%)

Query: 594 SVLEATFYRDEPPSPVRKISHAFTDDEAEWSPVDLNHIANCRKARFGSANDYNKLQNMKH 653
           + +              K+     D +  W    LN + NC             LQ + +
Sbjct: 164 TWVALDVCLSY------KVQCKM-DFKIFW----LN-LKNCNSPE----TVLEMLQKLLY 207

Query: 654 LDQNDMHINPTHEKSITDEIAPNFES-TDPNHRYISEILLASGFLRDFEADFMNIKLNPS 712
                             +I PN+ S +D +      I      LR      +  K   +
Sbjct: 208 ------------------QIDPNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYEN 245

Query: 713 GHLI-----NPNLF--FILEQTKACIRLPNDLHKGKKITNAEPNTKKAQRKLVFDAVNEI 765
             L+     N   +  F L     C  L         +T     T+  Q   V D ++  
Sbjct: 246 CLLVLLNVQNAKAWNAFNLS----CKIL---------LT-----TRFKQ---VTDFLSAA 284

Query: 766 LVHKLVLQESSKKWFSPSKLARGRSSGEQLLRDLCSEVDCL--QANNSNCNLDGDDDSMT 823
               + L   S    +P +          LL+ L      L  +   +N           
Sbjct: 285 TTTHISLDHHSMT-LTPDE------VKSLLLKYLDCRPQDLPREVLTTNPRR-------L 330

Query: 824 SIIWKDLKHGSTDWTNCSSEITWLVLDVERL--IFKDLISEIVRDETGSLQGHPGRHCRQ 881
           SII + ++ G   W N      W  ++ ++L  I +  ++ +   E            R+
Sbjct: 331 SIIAESIRDGLATWDN------WKHVNCDKLTTIIESSLNVLEPAEY-----------RK 373

Query: 882 LF 883
           +F
Sbjct: 374 MF 375


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00