Citrus Sinensis ID: 002779

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880--

MGDLRDWSPEPNGAVFGERPSSSSSSVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSSGITENCRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTNHYRDRPLNLRGRNQAPVRSPRSNGRVMTPPETNILEGSSHEPSPAHIHVHQVGVKAGLSEPCHSSSPEKKTQPNANGLVHPVDRVVEFGSVGHLYYGPPSLDSNRQPNTCSTIGQDSSVGLSSPRTPRSRPGLGTDQDRTDVQYHLKDEDFPPLSG

cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEEEEEccEEEEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEccccccHHHHHHHHHHHHHHccccccEEEEEcEEEEEEEEEEEEEEEccEEEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccEEEEccccccHHHcHHHcccccccccccccccHHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccccHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHccccccccccccccccccccccccccccccccccccccHccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHcccccHHHHcccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

mgdlrdwspepngavfgerpssssssvpsnqtaiGAEYWQRAEEATQGIIaqvqptvvseERRKAVIDYVQRLIRNYLgcevfpfgsvplktylpdgdidltafgglnVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDisfnqlgglstlcfLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFhsslngplAVLYKFLDYfskfdwdsycislngpvrisslpevvvetpensggdlllSSEFLKECVEqfsvpsrgfdtnsrsfppkhlnivdplkennnlgrsvskgnfyRIRSAFTYGARKlghilsqpeesLTDELRKFFSNTldrhgsgqrpdvqdpvplsryngfgvsstfsgtelcredqtiyesepnssgitencriddeaelcggvgkikvsgmessycrtinephnsgngtavsetrlsgdakdlatsknLNLVISNEtskcsslsgeeskarhaphlyfssstmgngeirngnSEWKQQLnsgsaeknvtsgilpthyketglillngqdenqldvnhgasspvesnhhpslmstipwsteefnfsysgyhasprtvgspraanslsdlsgdyeshqISLNHVWWWYEHalnssyspmspqllsQFQSKNSWDLMQRSlpfrrniipqmsangavprplfypmtppmlpgasfgmeempkhrgtgtyfpntnhyrdrplnlrgrnqapvrsprsngrvmtppetnilegsshepspahihVHQVGvkaglsepchssspekktqpnanglvhpvdrvvefgsvghlyygppsldsnrqpntcstigqdssvglssprtprsrpglgtdqdrtdvqyhlkdedfpplsg

mgdlrdwspepngavfgerpssssssvpsNQTAIGAEYWQRAEEATQGIIAqvqptvvseerrKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVpsrgfdtnsrsfppkhlnivdplkennnlgrsvskgnfyRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNtldrhgsgqrpdvqdpvplSRYNGFGVSSTFSGTELCREDQtiyesepnssgitenCRIDDEAELCGGVGKIKVSGMESSYCRTinephnsgngtaVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTNHYRdrplnlrgrnqapvrsprsngrvmtpPETNILEGSSHEPSPAHIHVHQVGVKAGLSEPCHSsspekktqpnanglvHPVDRVVEFGSVGHLYYGPPSLDSNRQPNTCSTigqdssvglssprtprsrpglgtdqdrtdvqyhlkdedfpplsg

MGDLRDWSPEPNGAVFGERpssssssvpsNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSSGITENCRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTNHYRDRPLNLRGRNQAPVRSPRSNGRVMTPPETNILEGSSHEPSPAHIHVHQVGVKAGLSEPCHSSSPEKKTQPNANGLVHPVDRVVEFGSVGHLYYGPPSLDSNRQPNTCSTIGQDSSVGLSSPRTPRSRPGLGTDQDRTDVQYHLKDEDFPPLSG

*********************************IGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVET****GGDLLLSSEFLKECVEQFS********************************SVSKGNFYRIRSAFTYGARKLGHIL**************************************YNGFGVSSTFSGTELC******************NCRIDDEAELCGGVGKIKVSGME*SYC**********************************************************************************************GILPTHYKETGLILLN******************************WSTEEFNFSYSG*************************SHQISLNHVWWWYEHALNS********************L****LPFRRNIIP**********PLFY************************************************************************************************************LVHPVDRVVEFGSVGHLYYG***********************************************************

**************************************WQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLD***********************************************************************************************************************************************************************************************************************************************************************HVWWW*********************************************************************************FPN*****************************************************************************************************************************************************DEDFPPL**

MGDLRDWSPEPNGAVF***************TAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSSGITENCRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNE***************HAPHLYFSSSTMGNGEIRNGNSEWK***********VTSGILPTHYKETGLILLNGQDENQLDVNH***********PSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTNHYRDRPLNLRGRNQAPVRSPRSNGRVMTPPETNILEGSSHEPSPAHIHVHQVGVKAGL****************ANGLVHPVDRVVEFGSVGHLYYGPPSLDSNRQPNTCSTI********************GTDQDRTDVQYHLKD********

*******************************TAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLS************************************************************************************************************************************EI***NSEWKQQL****AEKNVTS*************************************************************************SLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTNHYRDRPLNLR**************************************VHQV*V**********************************************************************************************EDF**L**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		882	2.2.26 [Sep-21-2011]
Q9UTN3		684	Poly(A) RNA polymerase ci	yes	no	0.226	0.292	0.254	2e-05
Q5XG87		542	DNA polymerase sigma OS=H	yes	no	0.278	0.453	0.232	3e-05
Q6PB75		542	DNA polymerase sigma OS=M	yes	no	0.278	0.453	0.232	3e-05

>sp\|Q9UTN3\|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid14 PE=1 SV=2	Back alignment and function desciption

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 20/220 (9%)

Query: 49  IIAQVQPTVVSEERRKAVIDYV-QRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107
            I  + PT      RK ++  + Q +++ +    ++ FGS   K YLP  D+DL      
Sbjct: 248 FIDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPE 307

Query: 108 NVEEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCL--VQNIVVDISFNQLG 164
           +       D+  +     + K A     + Q+I  A V ++K +  +  + VDISFNQ G
Sbjct: 308 HHYRGTKKDMFVLAHHLKKLKLAS----EVQVITTANVPIIKFVDPLTKVHVDISFNQPG 363

Query: 165 GLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFH 224
           GL T C +  V+  + K    +  +I+IK +    + +     G +S+YA+  LV+    
Sbjct: 364 GLKT-CLV--VNGFMKKYPALRPLVIIIKHFLNMRA-LNEVFLGGLSSYAIVCLVVSFLQ 419

Query: 225 LFHSSLNGPL-------AVLYKFLDYFSK-FDWDSYCISL 256
           L      G +        +L +FL+ + K F +D+  I++
Sbjct: 420 LHPRLSTGSMREEDNFGVLLLEFLELYGKQFYYDAVGIAV 459

Required for 3' polyadenylation of the 5.8S and 25S rRNAs as a prelude ot their degradation in the exosome. Involved in the nucleolar organization to ensure faithful chromosome segregation during mitosis.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9

>sp\|Q5XG87\|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2	Back alignment and function description

>sp\|Q6PB75\|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		882
359481238		884	PREDICTED: uncharacterized protein LOC10	0.976	0.973	0.582	0.0
449449962		898	PREDICTED: uncharacterized protein LOC10	0.984	0.966	0.583	0.0
297735556		824	unnamed protein product [Vitis vinifera]	0.921	0.986	0.575	0.0
449526634		816	PREDICTED: uncharacterized LOC101207419	0.893	0.965	0.570	0.0
79597803		829	NT domain of poly(A) polymerase and term	0.890	0.946	0.539	0.0
297816424		829	hypothetical protein ARALYDRAFT_485514 [	0.886	0.943	0.546	0.0
147817122		1147	hypothetical protein VITISV_017634 [Viti	0.768	0.591	0.537	0.0
359478494		854	PREDICTED: uncharacterized protein LOC10	0.934	0.964	0.488	0.0
30693508		755	NT domain of poly(A) polymerase and term	0.716	0.837	0.501	1e-178
6572083		764	putative protein [Arabidopsis thaliana]	0.716	0.827	0.501	1e-178

>gi\|359481238\|ref\|XP_002266958.2\| PREDICTED: uncharacterized protein LOC100258499 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/903 (58%), Positives = 622/903 (68%), Gaps = 42/903 (4%)

Query: 1   MGDLRDWSPEPNGAVFGERPSSSSSSVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSE 60
           MGDLR  SPEP G    +R     S    N  AIGA  W RAE   Q II +VQPT VSE
Sbjct: 1   MGDLRACSPEPRGLFTDDRLLPLPSLSHPNPPAIGAAQWARAENTVQEIICEVQPTEVSE 60

Query: 61  ERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSV 120
           ERRK V+DYVQ LIR  +GCEVFPFGSVPLKTYLPDGDIDLTAFGG  VE+ LA +V SV
Sbjct: 61  ERRKEVVDYVQGLIRVRVGCEVFPFGSVPLKTYLPDGDIDLTAFGGPAVEDTLAYEVYSV 120

Query: 121 LEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIG 180
           LE EDQN+AAEFVVKD QLI AEVKLVKCLVQNIVVDISFNQLGGL TLCFLEQ+DRLIG
Sbjct: 121 LEAEDQNRAAEFVVKDVQLIHAEVKLVKCLVQNIVVDISFNQLGGLCTLCFLEQIDRLIG 180

Query: 181 KDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKF 240
           KDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIF LFHS LNGPLAVLYKF
Sbjct: 181 KDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFLLFHSLLNGPLAVLYKF 240

Query: 241 LDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRG 300
           LDYFSKFDWD+YC+SLNGPVRISSLPE++ ETPEN G D LL+++ L++C+++FSVPSRG
Sbjct: 241 LDYFSKFDWDNYCVSLNGPVRISSLPEMIAETPENVGADPLLNNDILRDCLDRFSVPSRG 300

Query: 301 FDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLT 360
            +TNSR+F  KH NIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLG IL QPE+ ++
Sbjct: 301 LETNSRTFVQKHFNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGRILLQPEDKIS 360

Query: 361 DELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSS 420
           +EL KFF+NTL+RHG GQRPDV D +P+S  +GFG +S+ S  E   E + +  +  +S 
Sbjct: 361 EELCKFFTNTLERHGRGQRPDV-DLIPVSCSDGFGFASSISDLEFQEEKRILEVNYTDSR 419

Query: 421 GITENCRIDDEAELCGGVGKIKVSGMESSYCR------------TINEPHNSGNGTAVSE 468
            IT    +D E  +C GV  +K+SG E                  ++E  NS N  AVS 
Sbjct: 420 SITGESELDAERSMCDGVNCVKISGTELGMSNPQRGSKQVVPTSMLSEADNSSNAPAVSG 479

Query: 469 TRLSGDAKDLATSKNLNLVISNETSKCSSLSGEES------KARHAPHLYFSSSTMGNGE 522
            R+SGDAKDLA+ +     ISN+TSK S  SGEES      KA  APHLYFS S   NG+
Sbjct: 480 FRISGDAKDLASPRIRGPKISNDTSKSSPPSGEESVSVLSKKAHFAPHLYFSRSAQ-NGK 538

Query: 523 IRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNH 582
            RN N + K   NSG +E            +E+  ++ +G + NQ   NH   +   SN 
Sbjct: 539 ERNENLDKKLAGNSGLSE------------EESSFVVHHGLNGNQSVNNHELLNSFVSND 586

Query: 583 HPSLMSTIPWSTEEFNFSYSGYHASPRT--VGSPRAANSLSDLSGDYESHQISLNHVWWW 640
            P  +S    S+E   + ++G    P +   G+P A NSL+DLSGDY+SH  SL + WW 
Sbjct: 587 VPPGLSPTACSSE---YLHTGNWDRPSSGNSGNPEAPNSLADLSGDYDSHFNSLQYGWWC 643

Query: 641 YEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPP 700
           Y++   +    M   L SQFQS NSWD +Q+S   RRNI PQ++ANG +PRP FYP+ PP
Sbjct: 644 YDYIFGAPALSMPVALPSQFQSNNSWDAIQQSAHIRRNIFPQITANGIIPRPPFYPLNPP 703

Query: 701 MLPGASFGMEEMPKHRGTGTYFPNTNHYRDRPLNLRGRNQAPVRSPRSNGRVMTPPETNI 760
           M+ G  FG+EEMPK RGTGTYFPNT+H+   PL  RGRNQAPVRSPR +GR +TP ETN 
Sbjct: 704 MISGTGFGVEEMPKPRGTGTYFPNTSHHLCNPLTSRGRNQAPVRSPRHSGRAVTPHETNF 763

Query: 761 LEGSSHEPSPAHIHVHQVGVKAGLSEPCHSSSPEKKTQPNANGLVHPVDRVVEFGSVGHL 820
           LE SS E S A   VHQ   K+G  +   S SP  +T  NANG + P ++VVEFG     
Sbjct: 764 LERSSRELSHAQFPVHQGNGKSGSLDSHPSGSPVGRTYSNANGSLLPSEKVVEFGDQASE 823

Query: 821 YYGPPSLDSNRQPNTCSTIGQDSSVGLSSPRTPRSRPGLGTDQDRTDVQ-YHLKDE-DFP 878
              P ++   R+PN  S + Q+SS+ LS     R +  L  + DR  VQ YHLKDE DFP
Sbjct: 824 SPLPENI---REPNHGSFLPQNSSLSLSPGGAQRPKSMLSMNDDRVAVQAYHLKDEDDFP 880

Query: 879 PLS 881
           PLS
Sbjct: 881 PLS 883

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449449962\|ref\|XP_004142733.1\| PREDICTED: uncharacterized protein LOC101207419 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297735556\|emb\|CBI18050.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449526634\|ref\|XP_004170318.1\| PREDICTED: uncharacterized LOC101207419 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|79597803\|ref\|NP_850678.2\| NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Arabidopsis thaliana] gi\|332645293\|gb\|AEE78814.1\| NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297816424\|ref\|XP_002876095.1\| hypothetical protein ARALYDRAFT_485514 [Arabidopsis lyrata subsp. lyrata] gi\|297321933\|gb\|EFH52354.1\| hypothetical protein ARALYDRAFT_485514 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|147817122\|emb\|CAN62161.1\| hypothetical protein VITISV_017634 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359478494\|ref\|XP_002276607.2\| PREDICTED: uncharacterized protein LOC100253523 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|30693508\|ref\|NP_190730.2\| NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Arabidopsis thaliana] gi\|332645292\|gb\|AEE78813.1\| NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|6572083\|emb\|CAB63026.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		882
TAIR\|locus:2081885		829	AT3G51620 "AT3G51620" [Arabido	0.554	0.589	0.675	3.2e-221
TAIR\|locus:2076795		1303	AT3G61690 [Arabidopsis thalian	0.430	0.291	0.570	3.3e-127
TAIR\|locus:2078426		603	AT3G56320 [Arabidopsis thalian	0.396	0.580	0.603	1.5e-124
TAIR\|locus:2061868		502	AT2G40520 "AT2G40520" [Arabido	0.395	0.695	0.507	6.2e-98
TAIR\|locus:2164047		530	AT5G53770 "AT5G53770" [Arabido	0.204	0.339	0.247	3.7e-07
POMBASE\|SPCC663.12		336	cid12 "poly(A) polymerase Cid1	0.229	0.601	0.267	3e-06
TAIR\|locus:2063937		511	HESO1 "HEN1 suppressor 1" [Ara	0.299	0.516	0.261	3.3e-06
POMBASE\|SPAC12G12.13c		684	cid14 "poly(A) polymerase Cid1	0.225	0.290	0.276	8.5e-06

TAIR\|locus:2081885 AT3G51620 "AT3G51620" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1636 (581.0 bits), Expect = 3.2e-221, Sum P(2) = 3.2e-221
 Identities = 339/502 (67%), Positives = 385/502 (76%)

Query:    37 EYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPD 96
             E W R EEAT+ II QV PT+VSE+RR+ VI YVQ+LIR  LGCEV  FGSVPLKTYLPD
Sbjct:    32 ELWMRVEEATREIIEQVHPTLVSEDRRRDVILYVQKLIRMTLGCEVHSFGSVPLKTYLPD 91

Query:    97 GDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVV 156
             GDIDLTAFGGL  EE LA  V +VLERE+ N +++FVVKD QLIRAEVKLVKCLVQNIVV
Sbjct:    92 GDIDLTAFGGLYHEEELAAKVFAVLEREEHNLSSQFVVKDVQLIRAEVKLVKCLVQNIVV 151

Query:   157 DISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALE 216
             DISFNQ+GG+ TLCFLE++D LIGKDHLFKRSIILIKAWCYYESRILGA HGLISTYALE
Sbjct:   152 DISFNQIGGICTLCFLEKIDHLIGKDHLFKRSIILIKAWCYYESRILGAFHGLISTYALE 211

Query:   217 TLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENS 276
             TLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPV +SSLP++VVETPEN 
Sbjct:   212 TLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVCLSSLPDIVVETPENG 271

Query:   277 GGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYR 336
             G DLLL+SEFLKEC+E +SVPSRGF+TN R F  KHLNIVDPLKE NNLGRSVSKGNFYR
Sbjct:   272 GEDLLLTSEFLKECLEMYSVPSRGFETNPRGFQSKHLNIVDPLKETNNLGRSVSKGNFYR 331

Query:   337 IRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGV 396
             IRSAFTYGARKLG +  Q +E+++ ELRKFFSN L RHGSGQRPDV D +P  RYN +  
Sbjct:   332 IRSAFTYGARKLGQLFLQSDEAISSELRKFFSNMLLRHGSGQRPDVHDAIPFLRYNRY-- 389

Query:   397 SSTFSGTELCREDQTIYESEPNSS-GITENCRIDDEAELCGGVGKIKVSGMESSYCRTIN 455
             ++    +   +E Q + ESE +SS G T N R D E  L  GV     +G + S      
Sbjct:   390 NAILPASNHFQEGQVVNESESSSSSGATGNGRHDQEDSLDAGVSIPSTTGPDLS-----G 444

Query:   456 EPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKAR-HAPHLYFS 514
              P  +    +VSE R SGDAKDLAT +   L IS++  K   LS +ES +  +  H  F+
Sbjct:   445 SPGETV--PSVSEERFSGDAKDLATLRIQKLEISDDAMKSPCLSDKESDSPLNGKHHSFN 502

Query:   515 SSTMGNGEIRNGNSEWKQQLNS 536
                M NGE+ NGN   KQQ NS
Sbjct:   503 Q--MRNGEVLNGNGVGKQQENS 522

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2076795 AT3G61690 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2078426 AT3G56320 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2061868 AT2G40520 "AT2G40520" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2164047 AT5G53770 "AT5G53770" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

POMBASE\|SPCC663.12 cid12 "poly(A) polymerase Cid12" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

TAIR\|locus:2063937 HESO1 "HEN1 suppressor 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

POMBASE\|SPAC12G12.13c cid14 "poly(A) polymerase Cid14" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		882
cd05402		114	cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT	7e-14
COG5260		482	COG5260, TRF4, DNA polymerase sigma [DNA replicati	5e-10
pfam01909		92	pfam01909, NTP_transf_2, Nucleotidyltransferase do	0.004

>gnl\|CDD\|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases	Back alignment and domain information

 Score = 68.4 bits (168), Expect = 7e-14
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 11/110 (10%)

Query: 62  RRKAVIDYVQRLIR-NYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALA--NDVC 118
           +R+ V+D +Q LI+  + G +++PFGS      LP  DIDL   G  +  +       + 
Sbjct: 1   KREEVLDRLQELIKEWFPGAKLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLA 60

Query: 119 SVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQ--NIVVDISFNQLGGL 166
            +L++         VV+   +I A V ++K + +   I VDISFN L G+
Sbjct: 61  KLLKKS------GEVVEVEPIINARVPIIKFVDKPTGIEVDISFNNLNGI 104

Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxylate residues are conserved. Length = 114

>gnl\|CDD\|227585 COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|216779 pfam01909, NTP_transf_2, Nucleotidyltransferase domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		882
KOG1906		514	consensus DNA polymerase sigma [Replication, recom	100.0
COG5260		482	TRF4 DNA polymerase sigma [DNA replication, recomb	100.0
PTZ00418		593	Poly(A) polymerase; Provisional	99.96
KOG2245		562	consensus Poly(A) polymerase and related nucleotid	99.92
KOG2277		596	consensus S-M checkpoint control protein CID1 and	99.9
cd05402		114	NT_PAP_TUTase Nucleotidyltransferase (NT) domain o	99.81
COG5186		552	PAP1 Poly(A) polymerase [RNA processing and modifi	99.8
PRK13300		447	tRNA CCA-pyrophosphorylase; Provisional	99.77
TIGR03671		408	cca_archaeal CCA-adding enzyme.	99.77
COG1746		443	CCA1 tRNA nucleotidyltransferase (CCA-adding enzym	99.73
PF04928		254	PAP_central: Poly(A) polymerase central domain; In	99.71
PF03828		60	PAP_assoc: Cid1 family poly A polymerase; InterPro	98.5
PF09249		114	tRNA_NucTransf2: tRNA nucleotidyltransferase, seco	98.26
PF10421		190	OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain	97.91
smart00572		246	DZF domain in DSRM or ZnF_C2H2 domain containing p	97.71
PF01909		93	NTP_transf_2: Nucleotidyltransferase domain A subs	97.57
cd05400		143	NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT	97.52
cd05397		49	NT_Pol-beta-like Nucleotidyltransferase (NT) domai	97.52
cd05403		93	NT_KNTase_like Nucleotidyltransferase (NT) domain	97.24
PF03813		972	Nrap: Nrap protein; InterPro: IPR005554 Members of	96.77
COG1669		97	Predicted nucleotidyltransferases [General functio	96.3
PRK13746		262	aminoglycoside resistance protein; Provisional	95.79
PF07528		248	DZF: DZF domain; InterPro: IPR006561 This domain i	95.43
COG1708		128	Predicted nucleotidyltransferases [General functio	95.34
KOG2054		1121	consensus Nucleolar RNA-associated protein (NRAP)	94.31
KOG3793		362	consensus Transcription factor NFAT, subunit NF45	92.48
PF03813		972	Nrap: Nrap protein; InterPro: IPR005554 Members of	92.23
PF14091		152	DUF4269: Domain of unknown function (DUF4269)	90.26
PRK02098		221	phosphoribosyl-dephospho-CoA transferase; Provisio	90.19
TIGR03135		202	malonate_mdcG holo-ACP synthase, malonate decarbox	89.44
PF14792		112	DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R	81.14

>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=5.2e-41  Score=381.37  Aligned_cols=293  Identities=31%  Similarity=0.512  Sum_probs=234.2

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceEEeeeecCCCCCCCceEEEEEcC-CCCchHHHHHHH
Q 002779           41 RAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGG-LNVEEALANDVC  118 (882)
Q Consensus        41 ~le~~i~efv~~L~PT~eE~~~R~~Vv~~Lq~lI~~-~p~a~V~~FGS~~tGL~LP~SDIDL~V~~~-~~~~~~ll~~L~  118 (882)
                      .++++|..|+++|.||.+|.+.|..++++|+++|+. |+.|.|++|||+.||||||+|||||+|+.. ....+....++.
T Consensus        62 ~l~~eI~~fv~~l~pt~~e~~~R~~~~~~i~~~v~~~~~~a~v~~FGS~~tglyLP~sDIDl~v~~~~~~~~e~~~~~~~  141 (514)
T KOG1906|consen   62 RLRNEILDFVQYLIPTPEEIEVRSELVEKIRDVVKQKWPDASVYVFGSVPTGLYLPDSDIDLVVLSKFLNDKEDRAVKLE  141 (514)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcccceeEEeeeeeccccccccceEEEEecccccCchhhHHHHH
Confidence            367899999999999999999999999999999997 999999999999999999999999999998 444555555555


Q ss_pred             HHHHHHhhccccccceeEEEEE-eeeeeEEEEee--CCeEEEEeeccCCccchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 002779          119 SVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLV--QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAW  195 (882)
Q Consensus       119 ~~L~~~~~n~~~ef~Vk~V~vI-~ARVPIIKf~~--sGI~VDISfnn~~Gi~ns~fLe~v~~~i~~dp~fr~LvlLIK~W  195 (882)
                      .++..+.  ....   ..|.+| +||||||||++  ++|.||||||+.+|++++.|++   .++...|.+++|++++|+|
T Consensus       142 l~~~~e~--~~~~---~~v~~v~karvpiik~~d~~s~i~vDISFn~~~G~~aa~~i~---~~~~~~p~~~~lvlvlk~f  213 (514)
T KOG1906|consen  142 LALELEE--DNSA---FHVKVVQKARVPIIKFKDPVSNIHVDISFNQTNGVKAAKFIK---DFLRDHPFLRSLVLVLKQF  213 (514)
T ss_pred             HHHhhhh--cccc---ceEEEeeeeeeeeEEeecCccceEEEeeecccCchhHHHHHH---HHHhcCccchhHHHHHHHH
Confidence            5554322  1223   345567 99999999998  6999999999999999999874   4467789999999999999


Q ss_pred             HHHhhCccCccCCCCChHHHHHHHHHHHHhcCCCCCCh------HH-HHHHHHHhhc-cccCCcceEEccCCcccCCCCc
Q 002779          196 CYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGP------LA-VLYKFLDYFS-KFDWDSYCISLNGPVRISSLPE  267 (882)
Q Consensus       196 ak~e~rIlda~~GgLSSYAL~LMVI~fLQ~~~~~l~~p------Le-LL~~FFeyYs-~FDw~~~~ISI~gPv~lsslp~  267 (882)
                      +. +++++++++|||+||||++||++|||+++....++      ++ +|++||++|+ +|+|++.+|++..+        
T Consensus       214 l~-~r~ln~v~tGgisSyal~~Lv~~fl~l~~~~~s~~~~~~~~~~vll~~f~e~yG~~f~~~k~~i~~~~~--------  284 (514)
T KOG1906|consen  214 LY-ERRLNGVHTGGISSYALELLVLSFLQLHPRSKSGRLAVLKNLGVLLIKFFELYGRNFGYDKLGISLSLG--------  284 (514)
T ss_pred             HH-hhcccccccccchHHHHHHHHHHHHhhcccccCCccchhcccchHHHHHHHHhccccCchhhceeccCC--------
Confidence            97 79999999999999999999999999986554443      44 6799999997 99999999987522        


Q ss_pred             cccccCCCCCCCcccCHHHHHHHHhhccCCCCCCCCCCCCCCCcceEEcCCCCCCCCcccccCHHHHHHHHHHHHHHHHH
Q 002779          268 VVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARK  347 (882)
Q Consensus       268 l~~e~Pe~gg~~~lL~kE~Lr~~~~~fs~~~rg~e~~~~~f~~k~L~IEDPfd~snNlGRSVs~~n~~rIr~aF~~A~~~  347 (882)
                                +.+ +.++..++.+            + ....+..|+||||.++.||+||+.+  ++..|+.+|.+|+..
T Consensus       285 ----------g~~-~~~~~~~~~~------------~-~~~~~~~LsieDP~~P~ndigr~s~--~~~~v~~~F~~af~~  338 (514)
T KOG1906|consen  285 ----------GEY-VSKELTGFFN------------N-SLERPGSLSIEDPVDPTNDIGRSSF--NFSQVKGAFAYAFKV  338 (514)
T ss_pred             ----------ccc-ccHHhhhhhc------------c-cccCCCccccCCCCCcccccccccc--cHHHHHHHHHHHHHH
Confidence                      122 2233222211            1 0123457999999999999999986  799999999999999


Q ss_pred             HHHhhcCCC---------c-------hhH--HHHHHHHHHHHhhcCC
Q 002779          348 LGHILSQPE---------E-------SLT--DELRKFFSNTLDRHGS  376 (882)
Q Consensus       348 L~~iL~~p~---------~-------~i~--~el~~fF~~tl~r~g~  376 (882)
                      |......-.         .       .+.  .++.+|+.++...|..
T Consensus       339 l~~~~~~~~s~~~~~~~~~s~lg~~i~~~~~~~~r~~~~~~~~~~~~  385 (514)
T KOG1906|consen  339 LTNAVFSHGSSSLPEQANKSILGNIIEVSRKDEVRDYRTERDQGFNG  385 (514)
T ss_pred             HhhhhcccchhcccccccccccCCeeeccchhhhhhhhhhhhhcccc
Confidence            998665322         0       223  7788899988877763

>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair]	Back alignment and domain information

>PTZ00418 Poly(A) polymerase; Provisional	Back alignment and domain information

>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification]	Back alignment and domain information

>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases	Back alignment and domain information

>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]	Back alignment and domain information

>PRK13300 tRNA CCA-pyrophosphorylase; Provisional	Back alignment and domain information

>TIGR03671 cca_archaeal CCA-adding enzyme	Back alignment and domain information

>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs	Back alignment and domain information

>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1	Back alignment and domain information

>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core	Back alignment and domain information

>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat	Back alignment and domain information

>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins	Back alignment and domain information

>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis	Back alignment and domain information

>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme	Back alignment and domain information

>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins	Back alignment and domain information

>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	Back alignment and domain information

>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human	Back alignment and domain information

>COG1669 Predicted nucleotidyltransferases [General function prediction only]	Back alignment and domain information

>PRK13746 aminoglycoside resistance protein; Provisional	Back alignment and domain information

>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO)	Back alignment and domain information

>COG1708 Predicted nucleotidyltransferases [General function prediction only]	Back alignment and domain information

>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]	Back alignment and domain information

>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription]	Back alignment and domain information

>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human	Back alignment and domain information

>PF14091 DUF4269: Domain of unknown function (DUF4269)	Back alignment and domain information

>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional	Back alignment and domain information

>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific	Back alignment and domain information

>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		882
3nyb_A		323	Poly(A) RNA polymerase protein 2; polya RNA polyme	2e-35
2hhp_A		530	Poly(A) polymerase; template-independent RNA polym	6e-32
4ep7_A		340	Poly(A) RNA polymerase protein CID1; poly(U) polym	3e-31
4e8f_A		405	Poly(A) RNA polymerase protein CID1; beta polymera	6e-30
1q79_A		514	Poly(A) polymerase alpha; mRNA processing, nucleot	3e-29
3hj4_A		384	Minor editosome-associated tutase; nucleotidyltran	2e-28
2ikf_A		353	RNA uridylyl transferase; tutase, nucleotidyltrans	1e-23
2b4v_A		468	RNA editing complex protein MP57; tbret2, TBMP57,	3e-21
3pq1_A		464	Poly(A) RNA polymerase; nucleotidyl transferase, R	5e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11

>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323	Back alignment and structure

 Score =  136 bits (344), Expect = 2e-35
 Identities = 51/326 (15%), Positives = 106/326 (32%), Gaps = 49/326 (15%)

Query: 49  IIAQVQPTVVSEERRKAVIDYVQRLIRNYL-GCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107
            +A + P+    E R   I  ++  ++      ++  FGS     YLP  DID      L
Sbjct: 28  FVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSEL 87

Query: 108 NVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLS 167
             +E  + +    L    + K     V+     R  +         I + +SF +  G+ 
Sbjct: 88  GGKE--SRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIE 145

Query: 168 TLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFH 227
               + +    +      +  ++++K + +   R+   H G +  +++  LV    H+  
Sbjct: 146 AAKLIRE---WLDDTPGLRELVLIVKQFLHAR-RLNNVHTGGLGGFSIICLVFSFLHMHP 201

Query: 228 SSL-------NGPLAVLYKFLDYFSK-FDWDSYCISLNGPVRISSLPEVVVETPENSGGD 279
             +       +    +L +F + + K F +D   +  +    +                 
Sbjct: 202 RIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVY---------------- 245

Query: 280 LLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRS 339
                         F   +       ++  P  L I DP  E+NN+ R     N   I+ 
Sbjct: 246 --------------FPKSTWSAIQPIKN--PFSLAIQDPGDESNNISRGSF--NIRDIKK 287

Query: 340 AFTYGARKLGHILSQPEESLTDELRK 365
           AF      L +   +   +   +   
Sbjct: 288 AFAGAFDLLTNRCFELHSATFKDRLG 313

PyMOL of 3nyb

>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530	Back alignment and structure

>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340	Back alignment and structure

>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405	Back alignment and structure

>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353	Back alignment and structure

>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468	Back alignment and structure

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		882
d2b4va1		183	a.160.1.4 (A:289-471) RNA editing terminal uridyl	6e-21
d2q66a2		197	d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter	4e-19
d1q79a2		196	d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te	1e-12

>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183	Back information, alignment and structure


class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

 Score = 89.1 bits (220), Expect = 6e-21
 Identities = 27/180 (15%), Positives = 57/180 (31%), Gaps = 15/180 (8%)

Query: 189 IILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFD 248
            + +KAW    + +      ++++YA+  + +Y   +    L      L          D
Sbjct: 8   AMAVKAWGKA-TNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPD 66

Query: 249 WDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFL---KECVEQFSVPSRGFDTNS 305
           +             + L  ++               E +   +      S     F  N 
Sbjct: 67  FSPL-----YDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNK 121

Query: 306 RSFPPKHLNIVDPLKENN----NLGRSVSKGNFYRIRSAFTYGARKLGHIL--SQPEESL 359
           +     +  I DP ++      NL R +    F  ++  F   A+ +   L  + PE+S+
Sbjct: 122 KGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFLPTNAPEKSI 181

PyMOL of d2b4va1

>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197	Back information, alignment and structure

>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		882
d2b4va1		183	RNA editing terminal uridyl transferase 2, TUTase	99.96
d2q66a2		197	Poly(A) polymerase, PAP, N-terminal domain {Baker'	99.93
d1q79a2		196	Poly(A) polymerase, PAP, N-terminal domain {Cow (B	99.92
d1q79a1		150	Poly(A) polymerase, PAP, middle domain {Cow (Bos t	99.69
d2q66a1		150	Poly(A) polymerase, PAP, middle domain {Baker's ye	99.68
d1r89a2		142	tRNA nucleotidyltransferase, N-terminal domain {Ar	99.18
d2b4va2		259	RNA editing terminal uridyl transferase 2, TUTase	98.58
d1r89a1		115	tRNA nucleotidyltransferase, second domain {Archae	98.57
d1no5a_		100	Hypothetical protein HI0073 {Haemophilus influenza	98.55
d1px5a1		146	2'-5'-oligoadenylate synthetase 1, OAS1, second do	98.38
d1px5a2		200	2'-5'-oligoadenylate synthetase 1, OAS1, N-termina	98.22
d1ylqa1		90	Putative nucleotidyltransferase AF0614 {Archaeon A	98.04
d1wota_		98	Unnamed putative nucleotidyltransferase {Thermus t	97.9
d1knya2		125	Kanamycin nucleotidyltransferase (KNTase), N-termi	97.32
d2pbea2		135	Aminoglycoside 6-adenylyltransferase AadK {Bacillu	92.45
d1jmsa4		208	Terminal deoxynucleotidyl transferase {Mouse (Mus	87.96
d2bcqa3		190	DNA polymerase lambda {Human (Homo sapiens) [TaxId	84.75

>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.96  E-value=4.1e-30  Score=188.41  Aligned_cols=142  Identities=19%  Similarity=0.328  Sum_probs=105.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--------------------------CHH-
Q ss_conf             81347899999999999617248567998869999999999986598998--------------------------839-
Q 002779          182 DHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLN--------------------------GPL-  234 (882)
Q Consensus       182 dp~fk~LvlLIK~Wak~e~rIl~a~~GgLSSYaL~LMVI~fLQ~~~p~l~--------------------------~pL-  234 (882)
                      .|++|+|+++||+||| .++|+++++|+||||||++|||+|||++.+...                          .+| 
T Consensus         1 ~P~~R~l~~~vK~Wak-~~~i~~~~~G~lsSYal~lmvi~fLQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~   79 (183)
T d2b4va1           1 PVAARHTAMAVKAWGK-ATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELG   79 (183)
T ss_dssp             CTTHHHHHHHHHHHHH-TCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHH
T ss_pred             CCCEEEHHHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             9642229999999999-869997567882299999999999984488898987885132023444455554678877799


Q ss_pred             HHHHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE
Q ss_conf             99999997303-66677625871478544789852001678889975448789999975316788898889999899664
Q 002779          235 AVLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHL  313 (882)
Q Consensus       235 elL~~FFeyYs-~FDw~k~~ISI~GPvplssL~~~~~e~pe~~g~~~ll~kEfLk~~~~~fs~~~rg~e~~~~~f~~k~L  313 (882)
                      ++|.+||+||+ +|||.+.+||++...                    .+.++..+.   .+       ...........|
T Consensus        80 ~Ll~~FF~~Y~~~fd~~~~~Isi~~g~--------------------~~~k~~~~~---~~-------~~~~~~~~~~~l  129 (183)
T d2b4va1          80 RLLHGFFIFYAHHFDYEREVVSLNRNR--------------------RSYRSDIGW---NF-------PQNKKGTFSYNF  129 (183)
T ss_dssp             HHHHHHHHHHHHSSCTTTEEBCSSSSS--------------------CEEHHHHTC---CC-------GGGEETTEECSS
T ss_pred             HHHHHHHHHHCCCCCHHHCEEEECCCC--------------------CCCHHHHHC---CC-------CCCCCCCCCCCE
T ss_conf             999999998500258877636410487--------------------432043320---24-------446777777565


Q ss_pred             EECCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             982999999----98133669777999999999999999975509
Q 002779          314 NIVDPLKEN----NNLGRSVSKGNFYRIRSAFTYGARKLGHILSQ  354 (882)
Q Consensus       314 ~IeDPld~~----nNLGRSVs~~n~~rIr~AF~~Aa~~L~~il~~  354 (882)
                      +|||||++.    +|+||+++..++.+|+.+|+.|++.|.+++..
T Consensus       130 ~IeDPfd~~~~~~~Nv~r~v~~~~~~~I~~~f~~a~~~l~~~~~~  174 (183)
T d2b4va1         130 CIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFLPT  174 (183)
T ss_dssp             CBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             EEECCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             786887665544421342157899999999999999999988741

PyMOL of d2b4va1

>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure