Citrus Sinensis ID: 002782

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880--

MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVAKEQIESEGKTASKKRKSHKSRESSHKKERRADQTNAAAISLQA

ccccccccCEEcccEECcCEEEEEEEEcccccEEEEECcccEEEEEccccCEEEEEEcccccEEEEEEcccccEEEEECccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEECccccEEEEEccccCEEEEEEcccccEEEEEECccccccEEEEECccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEECccccEEEEEccccCEEEEECcccEEEEEEEccccccccccccccccccEEcccccccEEEEEEEcccEEEEEEcccccEEEEEccccEEEEccccccccEEEEEEcccccEEEEECccccEEEEEcccccccccccEEEEEEEEccccEEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEEEEEEcccccEEEEECccccEEEEEccccCEEEEEEcccccEEEEEEccccccEEEEECccccEEEEEcccccccccccccccEEEEEccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEEccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccHHHHHHHHccccccEEcccEEEEEEEcccHHHHHHHHHcccccEEEEEEccHHHccccHHHHHHHHHHcccHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHCCccccccccccccHHHHHccccccccccccccccEEcccccccccccccccccHcccccccccccHHHHccccccccccccccc

***LPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHALGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQRHFSRIDRLVRSTFLLDYTLTGMSVIE***************************************************************************

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Transducin beta-like protein 3		probable	Q8C4J7
Transducin beta-like protein 3		probable	Q2KJJ5
U3 small nucleolar RNA-associated protein 13	Involved in nucleolar processing of pre-18S ribosomal RNA.	probable	Q05946

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2YMU, chain A
Confidence level:confident
Coverage over the Query: 25-241,254-256,268-299,314-473,485-648
View the alignment between query and template
View the model in PyMOL

Template: 2CNX, chain A
Confidence level:confident
Coverage over the Query: 340-647
View the alignment between query and template
View the model in PyMOL

Template: 1VYH, chain C
Confidence level:confident
Coverage over the Query: 41-269
View the alignment between query and template
View the model in PyMOL

Template: 1PI6, chain A
Confidence level:probable
Coverage over the Query: 78-263,275-522
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID	Alignment Graph	Confidence Level	View Alignment and Template
Query
3shf, chain A		probable	Alignment \| Template Structure